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source: palm/trunk/SCRIPTS/mrun @ 1235

Last change on this file since 1235 was 1230, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1230 2013-09-20 06:56:52Z keck $
29	#
30	# 1229 2013-09-20 06:55:19Z raasch
31	# further adjustments for lccrayb
32	#
33	# 1224 2013-09-16 07:27:23Z raasch
34	# first adjustments for lccrayb
35	#
36	# 1210 2013-08-14 10:58:20Z raasch
37	# fftw support added
38	#
39	# 1201 2013-07-10 16:17:59Z witha
40	# adjustments for Forwind cluster (lcflow)
41	#
42	# 1199 2013-07-05 14:52:22Z raasch
43	# adjustments for CSC Helsinki (lccrayf),
44	# executables for batch jobs can be created in advance, in order to avoid calling
45	# the compiler within the batch job (only works if batch jobs are submitted on
46	# local host)
47	#
48	# 1190 2013-06-25 09:39:21Z heinze
49	# enable use of automatic restarts for ibmh
50	# use of cluster/express queue enabled (ibmh)
51	#
52	# 1124 2013-04-09 15:46:52Z raasch
53	# variable "memory" is exported via typeset option -x, because otherwise an unknown
54	# side effect may lead to data loss while getopts is reading the script-option arguments
55	#
56	# 1122 2013-04-09 08:37:16Z heinze
57	# Bugfix: change type of variable last_char
58	#
59	# 1119 2013-04-05 15:11:19Z raasch
60	# Bugfix for setting -T option for subjob
61	#
62	# 1108 2013-03-05 07:03:32Z raasch
63	# bugfix for coupled runs on lckyut/lckyuh
64	#
65	# 1106 2013-03-04 05:31:38Z raasch
66	# --stdin argument for mpiexec on lckyuh
67	# -y and -Y settings output to header
68	#
69	# 1103 2013-02-20 02:15:53Z raasch
70	# default script runs again under ksh, because of unsolved problems with read
71	# from stdin: when bash script is called from a ksh, message "read error: 0:
72	# Resource temporarily unavailable" appears and script does not stop,
73	# further bash compatibility adjustments,
74	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
75	# on lckyuh, but mrun does not terminate and issues a warning instead
76	#
77	# 1101 2013-02-17 10:20:21Z raasch
78	# script now running under bash instead of ksh, which required small adjustments
79	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
80	# read from stdin),
81	# cross compilername on lckyuh compute nodes replaced by real compiler name
82	#
83	# 1099 2013-02-10 01:47:43Z raasch
84	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
85	# and for Forwind cluster (lcflow)
86	# small further adjustments for lckyut
87	#
88	# 1094 2013-02-03 01:52:12Z raasch
89	# explicit ssh/scp port can be set in config file with environment variable
90	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
91	# decalpha parts (yonsei) removed
92	#
93	# 2013-02-02 07:06:13Z raasch
94	# adjustments for Kyushu-University computing center (lckyut - tatara)
95	#
96	# 1083 2013-01-04 10:22:09Z maronga
97	# bugfix in parameter file check (read %cpp_options was missing)
98	#
99	# 1069 2012-11-28 16:18:43Z maronga
100	# bugfix: coupling mode was always set to mpi2, typos removed
101	#
102	# 1058 2012-11-21 07:00:35Z raasch
103	# Intel inspector (inspxe) is given the number of PEs instead of the number of
104	# nodes
105	#
106	# 1046 2012-11-09 14:38:45Z maronga
107	# code put under GPL (PALM 3.9)
108	#
109	# 21/03/94 - Siggi - first version finished
110	# 03/03/94 - Siggi - script development started
111	#
112	#--------------------------------------------------------------------------------#
113	# mrun - script for running PALM jobs
114	#--------------------------------------------------------------------------------#
115
116
117
118	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
119
120	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
121	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
122	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
123
124	AddFilenames=""
125	additional_conditions=""
126	add_source_path=""
127	afname=""
128	archive_save=true
129	archive_system=none
130	check_namelist_files=true
131	combine_plot_fields=true
132	compiler_name=""
133	cond1=""
134	cond2=""
135	config_file=.mrun.config
136	coupled_dist=""
137	coupled_mode="mpi1"
138	cpp_opts=""
139	cpp_options=""
140	cpumax=0
141	cpurest=0
142	create_executable_for_batch=false
143	delete_temporary_catalog=true
144	do_batch=false
145	do_compile=true
146	do_remote=false
147	do_stagein=true
148	do_stageout=true
149	do_trace=false
150	email_notification="none"
151	exclude=""
152	executable=""
153	execution_error=false
154	fftw_inc=""
155	fftw_lib=""
156	fftw_support=false
157	fimm=false
158	fname=test
159	fromhost=""
160	global_revision=""
161	group_number=none
162	host=""
163	host_file=""
164	hp=""
165	ignore_archive_error=false
166	input_list=""
167	interpreted_config_file=""
168	job_catalog="~/job_queue"
169	job_on_file=""
170	keep_data_from_previous_run=false
171	link_local_input=false
172	link_local_output=false
173	localhost_realname=$(hostname)
174	local_compile=false
175	local_dvrserver_running=.FALSE.
176	locat=normal
177	mainprog=""
178	makefile=""
179	max_par_io_str=""
180	mc=$0
181	while [[ $(echo $mc \| grep -c "/") != 0 ]]
182	do
183	mc=`echo $mc \| cut -f2- -d"/"`
184	done
185	module_calls=""
186	mrun_script_name=$mc
187	netcdf_inc=""
188	netcdf_lib=""
189	netcdf_support=false
190	node_usage=default
191	numprocs=""
192	numprocs_atmos=0
193	numprocs_ocean=0
194	OOPT=""
195	openmp=false
196	output_list=""
197	package_list=""
198	punkte="..........................................................."
199	queue=none
200	read_from_config=""
201	restart_run=false
202	if [[ `hostname` = rte10 ]]
203	then
204	return_addres=133.5.185.60
205	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
206	elif [[ `hostname` = climate0 ]]
207	then
208	return_addres=165.132.26.68
209	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
210	elif [[ `hostname` = urban00 ]]
211	then
212	return_addres=147.46.30.151
213	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
214	else
215	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
216	fi
217	return_password=""
218	return_username=$LOGNAME
219	remotecall=false
220	remote_username=""
221	run_coupled_model=false
222	run_mode=""
223	scirocco=false
224	store_on_archive_system=false
225	striche=" ----------------------------------------------------------------------------"
226	silent=false
227	source_list=""
228	source_path=SOURCE
229	tasks_per_node=""
230	threads_per_task=1
231	tmpcreate=false
232	tmp_data_catalog=""
233	transfer_problems=false
234	usern=$LOGNAME
235	use_openmp=false
236	version="MRUN 2.0 Rev$Rev: 1230 $"
237	working_directory=`pwd`
238	TOPT=""
239	XOPT=""
240	zeit=$( date \| cut -c 12-19 )
241
242	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
243	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
244	# effect may cause data loss when getopts is reading the
245	# script-option arguments
246	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
247
248
249
250
251	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
252	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
253
254	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
255	# EXPORTIERT WERDEN
256	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
257	export group_number input_list numprocs output_list queue run_mode
258
259
260
261	# FEHLERBEHANDLUNG
262	# BEI EXIT:
263	trap 'rm -rf $working_directory/tmp_mrun
264	if [[ $locat != localhost ]]
265	then
266	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
267	# then
268	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
269	#MRUN-calls on $localhost
270	#
271	#date and time user localhost remotehost termination mrun-command
272	#--------------------------------------------------------------------------------------------------------------------
273	#%STATEND%
274	# chmod 666 ${mrun_path}/statistik/mrun_statistik
275	# fi
276	#
277	# # EINTRAG IN DIE STATISTIK-DATEI
278	# string1=`date` #-L35
279	# string2=$usern #-L12
280	# string3=$localhost_realname #-L12
281	# string4=$host #-L12
282	# string5=$locat #-L12
283	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
284	# then
285	# if [[ $do_batch = true ]]
286	# then
287	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
288	# else
289	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
290	# fi
291	# fi
292	echo " " > /dev/null
293	fi
294
295	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
296	then
297
298	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
299	(( i = 0 ))
300	while (( i < iec ))
301	do
302	(( i = i + 1 ))
303	printf "\n *** Execution of ERROR-command:\n"
304	printf " >>> ${err_command[$i]}\n"
305	eval ${err_command[$i]}
306	done
307	if [[ -n $interpreted_config_file ]]
308	then
309	rm -rf $interpreted_config_file
310	fi
311	if [[ -n .mrun_environment ]]
312	then
313	rm -rf .mrun_environment
314	fi
315	if [[ $tmpcreate = true ]]
316	then
317	printf "\n *** Contents of \"$TEMPDIR\":\n"
318	ls -al; cd
319	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
320	fi
321	if [[ "$dvrserver_id" != "" ]]
322	then
323	echo "+++ killing dvrserver_id=$dvrserver_id"
324	kill $dvrserver_id
325	fi
326	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
327	then
328	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
329	fi
330	printf "\n\n+++ MRUN killed \n\n"
331	elif [[ $locat != control_c ]]
332	then
333	printf "\n\n --> all actions finished\n\n"
334	printf " Bye, bye $usern !!\n\n"
335	fi' exit
336
337
338	# BEI TERMINAL-BREAK:
339	trap 'rm -rf $working_directory/tmp_mrun
340	rm -rf $working_directory/tmp_check_namelist_files
341	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
342	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
343	then
344	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
345	fi
346	if [[ "$dvrserver_id" != "" ]]
347	then
348	echo "+++ killing dvrserver_id=$dvrserver_id"
349	kill $dvrserver_id
350	fi
351	printf "\n+++ MRUN killed by \"^C\" \n\n"
352	locat=control_c
353	exit
354	' 2
355
356
357	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
358	# BEEN SET
359	if [[ "$PALM_BIN" = "" ]]
360	then
361	printf "\n +++ environment variable PALM_BIN has not been set"
362	printf "\n please set it to the directory where the PALM scripts are located"
363	locat=palm_bin; exit
364	fi
365	export PATH=$PALM_BIN:$PATH
366
367
368
369	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
370	# FUER FOLGEJOBS BENOETIGT WIRD
371	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
372	do
373	case $option in
374	(a) afname=$OPTARG;;
375	(A) store_on_archive_system=true; mc="$mc -A";;
376	(b) do_batch=true; mc="$mc -b";;
377	(B) delete_temporary_catalog=false; mc="$mc -B";;
378	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
379	(C) restart_run=true; mc="$mc -C";;
380	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
381	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
382	(F) job_on_file="-D"; mc="$mc -F";;
383	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
384	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
385	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
386	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
387	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
388	(I) ignore_archive_error=true; mc="$mc -I";;
389	(k) keep_data_from_previous_run=true; mc="$mc -k";;
390	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
391	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
392	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
393	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
394	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
395	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
396	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
397	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
398	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
399	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
400	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
401	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
402	(S) read_from_config=false; mc="$mc -S";;
403	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
404	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
405	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
406	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
407	(v) silent=true; mc="$mc -v";;
408	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
409	(x) do_trace=true;set -x; mc="$mc -x";;
410	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
411	(y) ocean_file_appendix=true; mc="$mc -y";;
412	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
413	(z) check_namelist_files=false; mc="$mc -z";;
414	(Z) combine_plot_fields=false; mc="$mc -Z";;
415	(\?) printf "\n +++ unknown option $OPTARG \n"
416	printf "\n --> type \"$0 ?\" for available options \n"
417	locat=parameter;exit;;
418	esac
419	done
420
421
422	# EVTL. POSITIONSPARAMETER EINLESEN
423	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
424	(( to_shift = $OPTIND - 1 ))
425	shift $to_shift
426
427	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
428	if [[ "$1" = "?" ]]
429	then
430	(printf "\n *** mrun can be called as follows:\n"
431	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
432	printf "\n Description of available options:\n"
433	printf "\n Option Description Default-Value"
434	printf "\n -a base name of input files equiv. -d"
435	printf "\n -A archiving when using file-attribute fl"
436	printf "\n -b batch-job on local machine ---"
437	printf "\n -B do not delete temporary directory at end ---"
438	printf "\n -c configuration file .mrun.config"
439	printf "\n -d base name of files attached to program test"
440	printf "\n -D preprocessor(cpp)-directives \"\" "
441	printf "\n -F create remote job file only ---"
442	printf "\n -h execution host $localhost_realname"
443	printf "\n -i INPUT control list \"\" "
444	printf "\n -I archiving errors of previous batch-jobs"
445	printf "\n will be ignored"
446	printf "\n -k keep data from previous run"
447	printf "\n -K additional conditions for controling"
448	printf "\n usage of conditional code and"
449	printf "\n env-variables in configuration file \"\" "
450	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
451	printf "\n -M Makefile name Makefile"
452	printf "\n -n node usage (shared/not_shared) depending on -h"
453	printf "\n -o OUTPUT control list \"\" "
454	printf "\n -O use OpenMP ---"
455	printf "\n -p software package list \"\" "
456	printf "\n -q queue \"$queue\" "
457	printf "\n -r run control list (combines -i -o) \"\" "
458	printf "\n -s filenames of routines to be compiled \"\" "
459	printf "\n must end with .f, .f90, .F, or .c !"
460	printf "\n use \"..\" for more than one file and wildcards"
461	printf "\n -s LM compiles all locally modified files"
462	printf "\n -S config file interpreted by shellscript ---"
463	printf "\n -t allowed cpu-time in seconds (batch) 0"
464	printf "\n -T tasks per node depending on -h"
465	printf "\n -u username on remote machine \"\" "
466	printf "\n -v no prompt for confirmation ---"
467	printf "\n -w maximum parallel io streams as given by -X"
468	printf "\n -x tracing of mrun for debug purposes ---"
469	printf "\n -X # of processors (on parallel machines) 1"
470	printf "\n -y add appendix \"_O\" to all local output"
471	printf "\n files (ocean precursor runs followed by"
472	printf "\n coupled atmosphere-ocean runs) ---"
473	printf "\n -Y run coupled model, \"#1 #2\" with"
474	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
475	printf "\n -z disable a priori parameter file check ---"
476	printf "\n -Z skip combine_plot_fields at the end of "
477	printf "\n the simulation ---"
478	printf "\n "
479	printf "\n Possible values of positional parameter <modus>:"
480	printf "\n \"?\" - this outline \n\n") \| more
481	exit
482	elif [[ "$1" != "" ]]
483	then
484	printf "\n +++ positional parameter $1 unknown \n"
485	locat=parameter; exit
486	fi
487
488
489
490	# KURZE STARTMELDUNG
491	printf "\n*** $version "
492	printf "\n will be executed. Please wait ..."
493
494
495
496	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
497	if [[ ! -f $config_file ]]
498	then
499	printf "\n\n +++ configuration file: "
500	printf "\n $config_file"
501	printf "\n does not exist"
502	locat=connect; exit
503	fi
504
505
506	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
507	line=""
508	grep "%host_identifier" $config_file > tmp_mrun
509	while read line
510	do
511	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
512	then
513	HOSTNAME=`echo $line \| cut -d" " -s -f2`
514	host_identifier=`echo $line \| cut -d" " -s -f3`
515	if [[ $localhost_realname = $HOSTNAME ]]
516	then
517	localhost=$host_identifier
518	break
519	fi
520	fi
521	done < tmp_mrun
522
523	if [[ "$localhost" = "" ]]
524	then
525	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
526	printf "\n for local host \"$localhost_realname\"."
527	printf "\n Please add line"
528	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
529	printf "\n to the configuration file."
530	locat=localhost; exit
531	fi
532
533
534	# HOSTSPEZIFISCHE VARIABLEN SETZEN
535	case $localhost_realname in
536	(r1\|r2\|h01\|b01) archive_system=tivoli;;
537	(cs*) archive_system=ut;;
538	(fimm.bccs.uib.no) fimm=true;;
539	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
540	(scirocco) scirocco=true;;
541	esac
542
543
544
545	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
546	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
547	[[ "$afname" = "" ]] && afname=$fname
548
549
550	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
551	if [[ "$run_mode" != "" ]]
552	then
553	input_list="$input_list $run_mode"
554	output_list="$output_list $run_mode"
555	fi
556
557
558	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
559	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
560	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
561	# STARTET)
562	if [[ "$fromhost" = "" ]]
563	then
564	fromhost=$localhost
565	fi
566
567
568	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
569	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
570	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
571	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
572	if [[ -n $host && "$host" != $localhost ]]
573	then
574	do_batch=true
575	do_remote=true
576	case $host in
577	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
578	(*) printf "\n"
579	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
580	printf "\n is not available"
581	locat=nqs; (( iec = 0 )); exit;;
582	esac
583	else
584	host=$localhost
585	fi
586
587
588	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
589	if [[ -n $additional_conditions ]]
590	then
591	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
592	cond1=`echo $additional_conditions \| cut -d" " -f1`
593	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
594	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
595	if [[ -n $dummy ]]
596	then
597	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
598	locat=options; exit
599	fi
600	block=_$cond1
601	[[ -n $cond2 ]] && block=${block}_$cond2
602	fi
603
604
605	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
606	if [[ $run_coupled_model = true ]]
607	then
608
609	if [[ -n $coupled_dist ]]
610	then
611
612	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
613	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
614
615	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
616	then
617
618	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
619	printf "\n PEs (total) : $numprocs"
620	printf "\n PEs (atmosphere): $numprocs_atmos"
621	printf "\n PEs (ocean) : $numprocs_ocean"
622	locat=coupling; exit
623
624	fi
625
626	else
627
628	(( numprocs_ocean = $numprocs / 2 ))
629	(( numprocs_atmos = $numprocs / 2 ))
630
631	fi
632	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
633
634	# GET coupled_mode FROM THE CONFIG FILE
635	line=""
636	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
637	while read line
638	do
639	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
640	then
641	coupled_mode="mpi2"
642	fi
643	done < tmp_mrun
644
645	fi
646
647
648	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
649	# ARCHIVIERUNG FEHLGESCHLAGEN IST
650	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
651	then
652	if [[ $ignore_archive_error = false ]]
653	then
654	printf "\n +++ data archiving of previous run failed"
655	printf "\n see directory \~/job_queue on remote machine"
656	locat=archive; exit
657	else
658	printf "\n +++ warning: data archiving in a previous run failed"
659	printf "\n MRUN continues, trying to get backup copy"
660	fi
661	fi
662
663
664	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
665	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
666	mrun_memory=$memory
667	mrun_group_number=$group_number
668	mrun_cpumax=$cpumax
669	mrun_numprocs=$numprocs
670
671
672	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
673	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
674	if [[ "$read_from_config" = false ]]
675	then
676
677	[[ $silent = false ]] && printf "\n Reading the configuration file... "
678	while read zeile
679	do
680	[[ $silent = false ]] && printf "."
681
682
683	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
684	# ERSETZEN
685	eval zeile=\"$zeile\"
686
687
688	# INTERPRETATION DER ZEILE
689	if [[ "$(echo $zeile)" = "" ]]
690	then
691	# LEERZEILE, KEINE AKTION
692	continue
693
694	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
695	then
696
697	# ZEILE IST KOMMENTARZEILE
698	true
699
700	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
701	then
702
703	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
704	zeile=$(echo $zeile \| cut -c2-)
705	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
706	var=`echo $zeile \| cut -d" " -f1`
707	value=`echo $zeile \| cut -d" " -s -f2`
708	for_host=`echo $zeile \| cut -d" " -s -f3`
709	for_cond1=`echo $zeile \| cut -d" " -s -f4`
710	for_cond2=`echo $zeile \| cut -d" " -s -f5`
711
712	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
713	then
714
715	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
716	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
717	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
718
719
720	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
721	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
722	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
723	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
724	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
725	# KONFIGURATIONSDATEI
726	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
727	then
728	eval $var=\$value
729
730	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
731	if [[ $do_trace = true ]]
732	then
733	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
734	fi
735	fi
736
737	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
738	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
739	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
740	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
741	if [[ $var = host ]]
742	then
743	if [[ -n $host && "$host" != $localhost ]]
744	then
745	do_batch=true
746	do_remote=true
747	case $host in
748	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
749	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
750	printf "\n is not available"
751	locat=nqs; exit;;
752	esac
753	else
754	host=$localhost
755	fi
756	fi
757
758	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
759	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
760	# DEN PROGRAMMEN BENOETIGT WERDEN
761	export $var
762	fi
763
764
765
766
767	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
768	then
769
770	# ZEILE DEFINIERT ERROR-KOMMANDO
771	(( iec = iec + 1 ))
772	zeile=$(echo $zeile \| cut -c4-)
773	err_command[$iec]="$zeile"
774
775	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
776	then
777
778	# ZEILE DEFINIERT INPUT-KOMMANDO
779	(( iic = iic + 1 ))
780	zeile=$(echo $zeile \| cut -c4-)
781	in_command[$iic]="$zeile"
782
783	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
784	then
785
786	# ZEILE DEFINIERT OUTPUT-KOMMANDO
787	(( ioc = ioc + 1 ))
788	zeile=$(echo $zeile \| cut -c4-)
789	out_command[$ioc]="$zeile"
790
791	else
792
793	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
794	# s2a: in/out - Feld
795	# s2b: loc - Feld (optional)
796	# s2c: tr/ar - Feld (optional)
797	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
798	s1=`echo $zeile \| cut -d" " -f1`
799	s2=`echo $zeile \| cut -d" " -s -f2`
800	s2a=$(echo $s2 \| cut -d":" -f1)
801	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
802	then
803	s2b=""
804	s2c=""
805	else
806	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
807	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
808	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
809	fi
810	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
811	s3=`echo $zeile \| cut -d" " -f3`
812	s4=`echo $zeile \| cut -d" " -s -f4`
813	s5=`echo $zeile \| cut -d" " -s -f5`
814	s6=`echo $zeile \| cut -d" " -s -f6`
815
816
817	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
818	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
819	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
820	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
821	# HANDEN SEIN MUSS (D.H. s2b = loc)
822	IFSALT="$IFS"; IFS="$IFS:"
823	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
824	then
825	found=false
826	for actual in $input_list
827	do
828	for formal in $s3
829	do
830	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
831	done
832	done
833	if [[ $found = true ]]
834	then
835	(( iin = iin + 1 ))
836	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
837	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
838	extin[$iin]=$s6
839	fi
840	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
841	then
842	found=false
843	for actual in $output_list
844	do
845	for formal in $s3
846	do
847	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
848	done
849	done
850	if [[ $found = true ]]
851	then
852	(( iout = iout + 1 ))
853	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
854	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
855	fi
856	elif [[ "$s2a" != in && "$s2a" != out ]]
857	then
858	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
859	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
860	locat=connect; exit
861	fi
862	IFS="$IFSALT"
863	fi
864	done < $config_file
865
866	else
867
868
869	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
870	[[ $silent = false ]] && printf "..."
871	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
872	export interpreted_config_file=.icf.$RANDOM
873
874
875
876	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
877	# VERFUEGUNG STELLEN
878	cat > .mrun_environment << %%END%%
879	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
880	config_file = '$config_file', do_remote = '$do_remote',
881	do_trace = '$do_trace', host = '$host',
882	input_list = '$input_list', icf = '$interpreted_config_file',
883	localhost = '$localhost', output_list = '$output_list' /
884
885	%%END%%
886
887	if [[ $localhost_realname = "sx-fep" ]]
888	then
889	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
890	else
891
892	if [[ "$host" != $localhost ]]
893	then
894
895	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
896	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
897	if [[ $? != 0 ]]
898	then
899	printf "\n\n +++ no interpret_config found"
900	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
901	locat=interpret_config; exit
902	fi
903	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
904	$interpret_config_executable
905
906	else
907
908	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
909	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
910	then
911	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
912	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
913	locat=interpret_config; exit
914	else
915	interpret_config${block}.x
916	fi
917
918	fi
919	fi
920	rm .mrun_environment
921
922
923	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
924	chmod u+x $interpreted_config_file
925	export PATH=$PATH:.
926	. $interpreted_config_file
927	rm $interpreted_config_file
928
929	fi
930
931
932	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
933	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
934	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
935	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
936	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
937	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
938	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
939
940
941	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
942	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
943	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
944	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
945	if [[ "$SOURCES_COMPLETE" = "" ]]
946	then
947
948	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
949	# VEREINBART WURDE
950	source_path=""
951	line=""
952	grep "%source_path" $config_file > tmp_mrun
953	while read line
954	do
955	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
956	then
957	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
958	then
959	global_source_path=`echo $line \| cut -d" " -f2`
960	fi
961	fi
962	done < tmp_mrun
963
964	line=""
965	found=false
966	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
967	while read line
968	do
969	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
970	then
971	if [[ $found = true ]]
972	then
973	printf "\n\n +++ more than one source path found in configuration file"
974	printf "\n for local host \"$localhost\" "
975	locat=source_path; exit
976	fi
977	source_path=`echo $line \| cut -d" " -f2`
978	found=true
979	fi
980	done < tmp_mrun
981	rm tmp_mrun
982
983	if [[ "$source_path" = "" ]]
984	then
985	if [[ "$global_source_path" != "" ]]
986	then
987	source_path=$global_source_path
988	else
989	printf "\n\n +++ no source path found in configuration file"
990	printf "\n for local host \"$localhost\" "
991	locat=source_path; exit
992	fi
993	fi
994	eval source_path=$source_path
995
996	if [[ ! -d $source_path ]]
997	then
998	printf "\n\n +++ source path \"$source_path\" on local host"
999	printf "\n \"$localhost\" does not exist"
1000	locat=source_path; exit
1001	fi
1002
1003	fi
1004
1005
1006	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1007	# DURCH OPTION -G MITGETEILT)
1008	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1009	then
1010	global_revision=`svnversion $source_path 2>/dev/null`
1011	global_revision="Rev: $global_revision"
1012	fi
1013
1014
1015	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1016	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1017	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1018	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1019	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1020	if [[ -n $host && "$host" != $localhost ]]
1021	then
1022	do_batch=true
1023	do_remote=true
1024	case $host in
1025	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1026	(*) printf "\n"
1027	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1028	printf "\n is not available"
1029	locat=nqs; (( iec = 0 )); exit;;
1030	esac
1031	else
1032	host=$localhost
1033	fi
1034
1035
1036	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1037	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1038	then
1039
1040	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1041	if [[ ! -n $numprocs ]]
1042	then
1043	printf "\n"
1044	printf "\n +++ option \"-K parallel\" requires additional specification"
1045	printf "\n of the number of processors to be used by"
1046	printf "\n mrun-option \"-X\" or by environment-variable"
1047	printf "\n \"numprocs\" in the configuration file"
1048	locat=numprocs; (( iec = 0 )); exit
1049	fi
1050
1051	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1052	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1053	# GESAMTPROZESSORANZAHL IST
1054	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1055	then
1056	printf "\n"
1057	printf "\n +++ option \"-T\" (tasks per node) is missing"
1058	printf "\n set -T option or define tasks_per_node in the config file"
1059	locat=tasks_per_node; (( iec = 0 )); exit
1060	fi
1061	if [[ $host != lcflow && $host != lcxt5m ]]
1062	then
1063	(( ival = $tasks_per_node ))
1064	(( pes = numprocs ))
1065	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1066	# then
1067	# (( pes = pes - 1 ))
1068	# fi
1069	(( ii = pes / ival ))
1070	if (( pes - ii * ival > 0 ))
1071	then
1072	printf "\n"
1073	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1074	printf "\n divisor of the total number of processors (option \"-X\")"
1075	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1076	locat=tasks_per_node; (( iec = 0 )); exit
1077	fi
1078	fi
1079
1080
1081	# IBMY HAT NUR EINEN KNOTEN
1082	if [[ $host = ibmy ]]
1083	then
1084	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1085	then
1086	printf "\n"
1087	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1088	printf "\n total number of processors (option \"-X\")"
1089	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1090	locat=tasks_per_node; (( iec = 0 )); exit
1091	fi
1092	fi
1093
1094
1095	# SETTINGS FOR SUBJOB-COMMAND
1096	OOPT="-O $threads_per_task"
1097
1098	# GESAMTZAHL DER KNOTEN BESTIMMEN
1099	if [[ "$tasks_per_node" != "" ]]
1100	then
1101	TOPT="-T $tasks_per_node"
1102	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1103	fi
1104
1105	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1106	# SETZEN
1107	if [[ $node_usage = default ]]
1108	then
1109	if [[ $host = ibms ]]
1110	then
1111	node_usage=shared
1112	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1113	then
1114	node_usage=singlejob
1115	else
1116	node_usage=not_shared
1117	fi
1118	fi
1119
1120	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1121	then
1122	printf "\n"
1123	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1124	printf "\n \"shared\" or \"not_shared\""
1125	locat=tasks_per_node; (( iec = 0 )); exit
1126	fi
1127
1128	fi
1129
1130	# PRUEFEN, OB HOSTFILE EXISTIERT
1131	if [[ -n $hostfile ]]
1132	then
1133	if [[ ! -f $hostfile ]]
1134	then
1135	printf "\n"
1136	printf "\n +++ hostfile \"$hostfile\" does not exist"
1137	locat=hostfile; exit
1138	fi
1139	fi
1140
1141	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1142	if [[ $host = ibmy && $do_remote = false ]]
1143	then
1144	if [[ ! -f $HOME/.rhosts ]]
1145	then
1146	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1147	printf "\n\n *** file:"
1148	printf "\n $HOME/.rhosts"
1149	printf "\n was created\n"
1150	fi
1151	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1152	then
1153	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1154	printf "\n\n *** file:"
1155	printf "\n $HOME/.rhosts"
1156	printf "\n was extended by the name of the current host\n"
1157	fi
1158	fi
1159
1160
1161	# Set default value for the maximum number of parallel io streams
1162	if [[ "$maximum_parallel_io_streams" = "" ]]
1163	then
1164	maximum_parallel_io_streams=$numprocs
1165	fi
1166
1167
1168	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1169	if [[ "$scp_port" != "" ]]
1170	then
1171	PORTOPT="-P $scp_port"
1172	SSH_PORTOPT="-p $scp_port"
1173	fi
1174
1175
1176	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1177	if [[ $queue = none ]]
1178	then
1179	case $host in
1180	(ibmh) queue=cluster;;
1181	(ibmkisti) queue=class.32plus;;
1182	(ibmy) queue=parallel;;
1183	(lckiaps) queue=normal;;
1184	(lckyoto) queue=ph;;
1185	(lckyuh) queue=fx-single;;
1186	(lckyut) queue=cx-single;;
1187	(lcsgib) queue=testq;;
1188	(lcsgih) queue=testq;;
1189	(lctit) queue=S;;
1190	(nech) queue=none;;
1191	(necriam) queue=SP;;
1192	(unics) queue=unics;;
1193	esac
1194	fi
1195
1196
1197	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1198	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1199	# ERMITTELN
1200	(( i = 0 ))
1201	while (( i < iin ))
1202	do
1203	(( i = i + 1 ))
1204	(( maxcycle = 0 ))
1205
1206	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1207	if [[ "${actionin[$i]}" = di ]]
1208	then
1209	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1210	# REM-MASCHINE AUSWERTEN
1211	eval filename=${pathin[$i]}/${endin[$i]}
1212	else
1213	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1214	# REM-MASCHINE AUSWERTEN
1215	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1216	fi
1217	eval pathname=${pathin[$i]}
1218
1219	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1220	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1221	then
1222	filename_input=$filename
1223	fi
1224
1225	# PRUEFEN AUF VORHANDENSEIN
1226	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1227	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1228	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1229	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1230	then
1231	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1232	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1233	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1234	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1235	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1236	if [[ "${transin[$i]}" != "locopt" ]]
1237	then
1238	printf "\n\n +++ INPUT-file: "
1239	if [[ "${extin[$i]}" = "" ]]
1240	then
1241	printf "\n $filename"
1242	else
1243	printf "\n $filename.${extin[$i]}"
1244	fi
1245	printf "\n does not exist\n"
1246	locat=input; exit
1247	else
1248	transin[$i]="unavailable"
1249	fi
1250	else
1251
1252	# ZYKLUSNUMMER FESTSTELLEN
1253	ls -1 -d $filename > filelist 2>/dev/null
1254	ls -1 -d $filename.* >> filelist 2>/dev/null
1255	while read zeile
1256	do
1257	cycle=$(echo $zeile \| cut -f2 -d".")
1258	if [[ "$cycle" = "$zeile" ]]
1259	then
1260	(( icycle = 0 ))
1261	elif [[ "$cycle" = "${extin[$i]}" ]]
1262	then
1263	(( icycle = 0 ))
1264	else
1265	(( icycle = $cycle ))
1266	fi
1267	if (( icycle > maxcycle ))
1268	then
1269	(( maxcycle = icycle ))
1270	file_to_be_used=$zeile
1271	fi
1272	done <filelist
1273	rm filelist
1274
1275	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1276	if (( maxcycle > 0 ))
1277	then
1278	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1279	then
1280	filename=${filename}.$maxcycle.${extin[$i]}
1281	else
1282	filename=${filename}.$maxcycle
1283	fi
1284	else
1285	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1286	then
1287	filename=${filename}.${extin[$i]}
1288	fi
1289	fi
1290
1291	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1292	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1293	absnamein[$i]=$filename
1294	if (( maxcycle > 0 ))
1295	then
1296	if [[ "${actionin[$i]}" = di ]]
1297	then
1298	frelin[$i]=${endin[$i]}.$maxcycle
1299	else
1300	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1301	fi
1302	else
1303	if [[ "${actionin[$i]}" = di ]]
1304	then
1305	frelin[$i]=${endin[$i]}
1306	else
1307	frelin[$i]=${afname}${endin[$i]}
1308	fi
1309	fi
1310
1311	fi
1312	done
1313
1314	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1315	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1316	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1317	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1318	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1319	(( i = 0 ))
1320	while (( i < iout ))
1321	do
1322	(( i = i + 1 ))
1323	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1324	then
1325	if [[ "${actionout[$i]}" = tr ]]
1326	then
1327	actionout[$i]=""
1328	elif [[ "${actionout[$i]}" = trpe ]]
1329	then
1330	actionout[$i]=pe
1331	elif [[ "${actionout[$i]}" = tra ]]
1332	then
1333	actionout[$i]=a
1334	fi
1335	(( maxcycle = 0 ))
1336	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1337	eval catalogname=${pathout[$i]}
1338	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1339	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1340	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1341	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1342	then
1343
1344	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1345	if cat /dev/null > $filename
1346	then
1347	rm $filename
1348	else
1349
1350	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1351	if [[ ! -d $catalogname ]]
1352	then
1353	if mkdir -p $catalogname
1354	then
1355	printf "\n\n *** directory:"
1356	printf "\n $catalogname"
1357	printf "\n was created\n"
1358	else
1359	printf "\n\n +++ OUTPUT-file:"
1360	printf "\n $filename"
1361	printf "\n cannot be created, because directory does not exist"
1362	printf "\n and cannot be created either"
1363	printf "\n"
1364	locat=output ; exit
1365	fi 2>/dev/null
1366	else
1367	printf "\n\n +++ OUTPUT-file:"
1368	printf "\n $filename"
1369	printf "\n cannot be created, although directory exists"
1370	printf "\n"
1371	locat=output ; exit
1372	fi
1373	fi 2>/dev/null
1374	else
1375
1376	# ZYKLUSNUMMER FESTSTELLEN
1377	ls -1 -d $filename > filelist 2>/dev/null
1378	ls -1 -d $filename.* >> filelist 2>/dev/null
1379	while read zeile
1380	do
1381	cycle=$(echo $zeile \| cut -f2 -d".")
1382	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1383	then
1384	(( icycle = 1 ))
1385	else
1386	(( icycle = $cycle + 1 ))
1387	fi
1388	if (( icycle > maxcycle ))
1389	then
1390	(( maxcycle = icycle ))
1391	fi
1392	done <filelist
1393	rm filelist
1394	fi
1395
1396	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1397	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1398	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1399	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1400	if [[ "${actionout[$i]}" != a ]]
1401	then
1402	if (( maxcycle > 0 ))
1403	then
1404	filename=${filename}.$maxcycle
1405	if cat /dev/null > $filename
1406	then
1407	rm $filename
1408	else
1409	printf "\n +++ OUTPUT-file:"
1410	printf "\n $filename"
1411	printf "\n cannot be created"
1412	locat=output ; exit
1413	fi
1414	fi
1415	else
1416	(( maxcycle = maxcycle - 1 ))
1417	if (( maxcycle > 0 ))
1418	then
1419	filename=${filename}.$maxcycle
1420	fi
1421	fi
1422
1423	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1424	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1425	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1426	pathout[$i]=$filename
1427	if (( maxcycle > 0 ))
1428	then
1429	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1430	else
1431	frelout[$i]=${fname}${endout[$i]}
1432	fi
1433
1434	fi
1435	done
1436
1437
1438	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1439	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1440	then
1441	if [[ "$dvr_inc" = "" ]]
1442	then
1443	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1444	printf "\n This is required for the dvrp_graphics package.\n"
1445	locat=dvr; exit
1446	fi
1447	if [[ "$dvr_lib" = "" ]]
1448	then
1449	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1450	printf "\n This is required for the dvrp_graphics package.\n"
1451	locat=dvr; exit
1452	fi
1453	fi
1454
1455
1456	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1457	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1458	# UEBERSETZT ZU WERDEN)
1459	if [[ "$mainprog" = "" && "$executable" = "" ]]
1460	then
1461	printf "\n +++ neither main program nor executable defined"
1462	locat=source; exit
1463	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1464	then
1465	printf "\n +++ main program as well as executable defined"
1466	locat=source; exit
1467	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1468	then
1469	do_compile=false
1470	fi
1471
1472
1473	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1474	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1475	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1476	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1477	then
1478	rm -rf SOURCES_FOR_RUN_$fname
1479	mkdir SOURCES_FOR_RUN_$fname
1480	fi
1481
1482
1483	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1484	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1485	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1486	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1487	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1488	then
1489
1490	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1491
1492	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1493	then
1494
1495	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1496	source_list=""
1497	cd $source_path
1498
1499
1500	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1501	if [[ ! -d .svn ]]
1502	then
1503	printf "\n\n +++ source directory"
1504	printf "\n \"$source_path\" "
1505	printf "\n is not under control of \"subversion\"."
1506	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1507	fi
1508
1509
1510	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1511	Filenames=""
1512	svn status > tmp_mrun
1513	while read line
1514	do
1515	firstc=`echo $line \| cut -c1`
1516	if [[ $firstc = M \|\| $firstc = "?" ]]
1517	then
1518	Name=`echo "$line" \| cut -c8-`
1519	extension=`echo $Name \| cut -d. -f2`
1520	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1521	then
1522	Filenames="$Filenames "$Name
1523	fi
1524	fi
1525	done < tmp_mrun
1526
1527
1528	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1529	for dateiname in $Filenames
1530	do
1531	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1532	source_list=$source_list"$dateiname "
1533	done
1534
1535	cd - > /dev/null
1536
1537
1538	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1539	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1540	# VORHANDEN
1541	elif [[ "$source_list" != "" && $restart_run != true ]]
1542	then
1543
1544	cd $source_path
1545
1546	for filename in $source_list
1547	do
1548
1549	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1550	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1551	then
1552	printf "\n +++ source code file: $filename"
1553	printf "\n must not contain (\"/\") "
1554	locat=source; exit
1555	fi
1556
1557	if [[ ! -f $filename ]]
1558	then
1559	printf "\n +++ source code file: $filename"
1560	printf "\n does not exist"
1561	locat=source; exit
1562	else
1563	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1564	fi
1565
1566	done
1567
1568	cd - > /dev/null
1569
1570	fi
1571
1572
1573	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1574	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1575	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1576	if [[ $restart_run != true ]]
1577	then
1578
1579	if [[ ! -f "$source_path/$mainprog" ]]
1580	then
1581	printf "\n\n +++ main program: $mainprog"
1582	printf "\n does not exist in source directory"
1583	printf "\n \"$source_path\"\n"
1584	locat=source; exit
1585	else
1586	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1587	then
1588	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1589	source_list=${mainprog}" $source_list"
1590	fi
1591	fi
1592	fi
1593
1594
1595	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1596	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1597	if [[ "$restart_run" != true ]]
1598	then
1599	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1600	if [[ ! -f $makefile ]]
1601	then
1602	printf "\n +++ file \"$makefile\" does not exist"
1603	locat=make; exit
1604	else
1605	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1606	fi
1607	fi
1608
1609
1610	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1611	if [[ $restart_run != true && "$add_source_path" != "" ]]
1612	then
1613
1614	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1615	if [[ ! -d $add_source_path ]]
1616	then
1617	printf "\n\n +++ WARNING: additional source code directory"
1618	printf "\n \"$add_source_path\" "
1619	printf "\n does not exist or is not a directory."
1620	printf "\n No source code will be used from this directory!\n"
1621	add_source_path=""
1622	if [[ $silent == false ]]
1623	then
1624	sleep 3
1625	fi
1626	else
1627
1628	cd $add_source_path
1629	found=false
1630
1631	Names=$(ls -1 *.f90 2>&1)
1632	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1633	Names=$(ls -1 *.F90 2>&1)
1634	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1635	Names=$(ls -1 *.F 2>&1)
1636	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1637	Names=$(ls -1 *.f 2>&1)
1638	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1639	Names=$(ls -1 *.c 2>&1)
1640	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1641
1642	cd - > /dev/null
1643	cd SOURCES_FOR_RUN_$fname
1644
1645	# COPY MAKEFILE IF EXISTING
1646	if [[ -f $add_source_path/Makefile ]]
1647	then
1648	printf "\n\n *** user Makefile from directory"
1649	printf "\n \"$add_source_path\" is used \n"
1650	if [[ $silent == false ]]
1651	then
1652	sleep 1
1653	fi
1654	cp $add_source_path/Makefile .
1655	fi
1656
1657	for dateiname in $AddFilenames
1658	do
1659	if [[ -f $dateiname ]]
1660	then
1661	printf "\n +++ source code file \"$dateiname\" found in additional"
1662	printf "\n source code directory \"$add_source_path\" "
1663	printf "\n but was also given with option \"-s\" which means that it should be taken"
1664	printf "\n from directory \"$source_path\"."
1665	locat=source; exit
1666	fi
1667
1668	cp $add_source_path/$dateiname .
1669	source_list="$source_list $dateiname"
1670
1671	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1672	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1673	then
1674	printf "\n\n +++ user file \"$dateiname\" "
1675	printf "\n is not listed in Makefile \n"
1676	locat=source; exit
1677	else
1678
1679	# Default User-Interface von der Liste entfernen, falls Datei
1680	# ein User-Interface enthaelt
1681	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1682	# then
1683	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1684	# then
1685	# rm -rf user_interface.f90
1686	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1687	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1688	# printf "\n since a user-interface is found in file"
1689	# printf "\n \"$add_source_path/$dateiname\" \n"
1690	# sleep 3
1691	# else
1692	if [[ $found = false ]]
1693	then
1694	found=true
1695	printf "\n\n *** following user file(s) added to the"
1696	printf " files to be translated:\n "
1697	fi
1698	printf "$dateiname "
1699	if [[ $silent == false ]]
1700	then
1701	sleep 0.5
1702	fi
1703
1704	fi
1705	done
1706	[[ $found = true ]] && printf "\n"
1707	cd - > /dev/null
1708	fi
1709	fi
1710
1711
1712	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1713	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1714	if [[ $restart_run != true && -n $package_list ]]
1715	then
1716
1717	cd $source_path
1718
1719	for package in $package_list
1720	do
1721
1722	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1723
1724	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1725	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1726	# LIEFERT
1727	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1728
1729
1730	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1731	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1732	for source_list_name in $package_source_list
1733	do
1734	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1735	then
1736
1737	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1738	ending=`echo $source_list_name \| cut -f2 -d.`
1739	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1740	then
1741	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1742	source_list="$source_list $source_list_name"
1743	fi
1744	fi
1745	done
1746	done
1747
1748	cd - > /dev/null
1749	fi
1750
1751
1752	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1753	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1754	# if [[ "$restart_run" != true ]]
1755	# then
1756	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1757	# if [[ ! -f $makefile ]]
1758	# then
1759	# printf "\n +++ file \"$makefile\" does not exist"
1760	# locat=make; exit
1761	# else
1762	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1763	# fi
1764	# fi
1765
1766	fi # do_compile=true
1767
1768
1769	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1770	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1771	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1772	then
1773
1774	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1775	# ZUSAMMENSETZEN
1776	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1777	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1778	then
1779	cpp_options="${cpp_options},-D__ibm=__ibm"
1780	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1781	then
1782	cpp_options="$cpp_options -D__nec"
1783	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1784	then
1785	cpp_options="$cpp_options -D__lc"
1786	else
1787	cpp_options="$cpp_options -D__$localhost"
1788	fi
1789
1790	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1791	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1792	then
1793	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1794	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1795	else
1796	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1797	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1798	fi
1799
1800	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1801	if [[ -n $package_list ]]
1802	then
1803	for package in $package_list
1804	do
1805	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1806	then
1807	if [[ $package != "dvrp_graphics+1PE" ]]
1808	then
1809	cpp_options="${cpp_options},-D__$package=__$package"
1810	else
1811	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1812	export use_seperate_pe_for_dvrp_output=true
1813	fi
1814	else
1815	if [[ $package != "dvrp_graphics+1PE" ]]
1816	then
1817	cpp_options="$cpp_options -D__$package"
1818	else
1819	cpp_options="$cpp_options -D__dvrp_graphics"
1820	export use_seperate_pe_for_dvrp_output=true
1821	fi
1822	fi
1823	done
1824	fi
1825
1826	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1827	if [[ -n $cpp_opts ]]
1828	then
1829	for popts in $cpp_opts
1830	do
1831	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1832	then
1833	cpp_options="${cpp_options},-D__$popts=__$popts"
1834	else
1835	cpp_options="$cpp_options -D__$popts"
1836	fi
1837	done
1838	fi
1839
1840	else
1841
1842
1843	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1844	if [[ $do_remote = false ]]
1845	then
1846	if [[ ! -f $executable ]]
1847	then
1848	printf "\n +++ executable file: $executable"
1849	printf "\n does not exist"
1850	locat=executable; exit
1851	fi
1852	fi
1853	fi
1854
1855
1856	# JOBMODUS FESTSTELLEN
1857	if [[ "$ENVIRONMENT" = BATCH ]]
1858	then
1859	jobmo=BATCH
1860	else
1861	jobmo=INTERACTIVE
1862	fi
1863
1864
1865	# no interactive runs on lctit
1866	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1867	then
1868	printf "\n +++ no interactive runs allowed on host \"$host\" "
1869	printf "\n please submit batch job using mrun option \"-b\" \n"
1870	locat=normal; exit
1871	fi
1872
1873
1874	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1875	# DURCH BENUTZER ANDERWEITIG VEREINBART
1876	if [[ "$compiler_name" = "" ]]
1877	then
1878
1879	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1880	locat=compiler_name; exit
1881
1882	fi
1883
1884
1885	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1886	[[ $localhost = necriam ]] && compiler_name=mpif90
1887
1888
1889
1890	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1891	kennung=$RANDOM
1892	if [[ "$tmp_user_catalog" = "" ]]
1893	then
1894	if [[ $localhost = ibmh ]]
1895	then
1896	tmp_user_catalog=$SCRATCH
1897	elif [[ $localhost = nech ]]
1898	then
1899	tmp_user_catalog=$WRKSHR
1900	else
1901	tmp_user_catalog=/tmp
1902	fi
1903	fi
1904	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1905
1906
1907	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1908	# BESTIMMEN
1909	if [[ "$tmp_data_catalog" = "" ]]
1910	then
1911	if [[ $localhost = nech ]]
1912	then
1913	tmp_data_catalog=$WRKSHR/mrun_restart_data
1914	else
1915	tmp_data_catalog=/tmp/mrun_restart_data
1916	fi
1917	fi
1918
1919
1920	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1921	# ERSETZEN
1922	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1923	then
1924	eval fopts=\"$fopts\"
1925	eval lopts=\"$lopts\"
1926	fi
1927
1928
1929
1930	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1931	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1932	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1933	ROPTS="$ropts"
1934	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1935	# then
1936	XOPT="-X $numprocs"
1937	# fi
1938
1939
1940
1941	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1942	# GRAMM BENOETIGT
1943	done=false
1944	while [[ $done = false ]]
1945	do
1946	cputime=$cpumax
1947	if (( $cputime == 0 ))
1948	then
1949	if [[ $do_batch = true ]]
1950	then
1951	printf "\n +++ cpu-time is undefined"
1952	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1953	printf "\n >>> "
1954	read cputime 1>/dev/null 2>&1
1955	else
1956	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1957	fi
1958	else
1959	done=true
1960	fi
1961	cpumax=$cputime
1962	done
1963
1964	(( minuten = cputime / 60 ))
1965	(( sekunden = cputime - minuten * 60 ))
1966
1967
1968	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1969	if [[ $do_batch = true ]]
1970	then
1971	done=false
1972	while [[ $done = false ]]
1973	do
1974	if (( memory == 0 ))
1975	then
1976	printf "\n +++ memory demand is undefined"
1977	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1978	printf "\n >>> "
1979	read memory 1>/dev/null 2>&1
1980	else
1981	done=true
1982	fi
1983	done
1984	fi
1985
1986
1987	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1988	if [[ $do_remote = true && -z $remote_username ]]
1989	then
1990	while [[ -z $remote_username ]]
1991	do
1992	printf "\n +++ username on remote host \"$host\" is undefined"
1993	printf "\n >>> Please type username:"
1994	printf "\n >>> "
1995	read remote_username
1996	done
1997	mc="$mc -u$remote_username"
1998	fi
1999
2000	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2001	if [[ "$login_init_cmd" != "" ]]
2002	then
2003	export init_cmds="${login_init_cmd};"
2004	fi
2005
2006
2007	# set module load command and export for subjob
2008	if [[ "$modules" != "" ]]
2009	then
2010	if [[ $host = lctit ]]
2011	then
2012	export module_calls=". $modules"
2013	else
2014	export module_calls="module load ${modules};"
2015	fi
2016	fi
2017
2018	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2019	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2020	then
2021	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2022	then
2023	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2024	fi
2025	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2026	# then
2027	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2028	# echo "*** module_calls = $module_calls"
2029	# fi
2030	fi
2031
2032
2033	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2034	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2035	then
2036	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2037	then
2038	mpilib=mpt
2039	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2040	then
2041	mpilib=mvapich
2042	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2043	then
2044	mpilib=impi
2045	fi
2046	fi
2047
2048
2049
2050	###########################################################################
2051	# HEADER-AUSGABE
2052	###########################################################################
2053
2054
2055	calltime=$(date)
2056	printf "\n"
2057	# [[ $silent = false ]] && clear
2058	printf "#------------------------------------------------------------------------# \n"
2059	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2060	printf "\| \| \n"
2061	spalte1="called on:"; spalte2=$localhost_realname
2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2063	if [[ $local_compile = false ]]
2064	then
2065	if [[ $do_remote = true ]]
2066	then
2067	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2068	else
2069	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2070	fi
2071	else
2072	spalte1="compiling test only!"; spalte2=""
2073	fi
2074	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2075	if [[ -n $numprocs ]]
2076	then
2077	if [[ $run_coupled_model = false ]]
2078	then
2079	spalte1="number of PEs:"; spalte2=$numprocs
2080	else
2081	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2082	fi
2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2084	fi
2085	if [[ -n $tasks_per_node ]]
2086	then
2087	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2088	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2089	fi
2090	if [[ $maximum_parallel_io_streams != $numprocs ]]
2091	then
2092	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	fi
2095	if [[ $use_openmp = true ]]
2096	then
2097	spalte1="threads per task:"; spalte2="$threads_per_task"
2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2099	fi
2100	printf "\| \| \n"
2101	if [[ $do_compile = true ]]
2102	then
2103	if [[ "$mopts" != "" ]]
2104	then
2105	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$mopts" \| cut -c46-)
2108	while [[ "$zeile" != "" ]]
2109	do
2110	spalte1=""
2111	spalte2=$(echo "$zeile" \| cut -c-45)
2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2113	zeile=$(echo "$zeile" \| cut -c46-)
2114	done
2115	fi
2116
2117	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	zeile=$(echo "$cpp_options" \| cut -c46-)
2120	while [[ "$zeile" != "" ]]
2121	do
2122	spalte1=""
2123	spalte2=$(echo "$zeile" \| cut -c-45)
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125	zeile=$(echo "$zeile" \| cut -c46-)
2126	done
2127
2128	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	zeile=$(echo "$fopts" \| cut -c46-)
2131	while [[ "$zeile" != "" ]]
2132	do
2133	spalte1=""
2134	spalte2=$(echo "$zeile" \| cut -c-45)
2135	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2136	zeile=$(echo "$zeile" \| cut -c46-)
2137	done
2138
2139	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	zeile=$(echo "$lopts" \| cut -c46-)
2142	while [[ "$zeile" != "" ]]
2143	do
2144	spalte1=""
2145	spalte2=$(echo "$zeile" \| cut -c-45)
2146	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2147	zeile=$(echo "$zeile" \| cut -c46-)
2148	done
2149
2150	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	zeile=$(echo "$modules" \| cut -c46-)
2153	while [[ "$zeile" != "" ]]
2154	do
2155	spalte1=""
2156	spalte2=$(echo "$zeile" \| cut -c-45)
2157	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2158	zeile=$(echo "$zeile" \| cut -c46-)
2159	done
2160
2161	spalte1="main program:"; spalte2=$mainprog
2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2163	else
2164	spalte1=executable:; spalte2=$executable
2165	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2166	fi
2167	printf "\| \| \n"
2168	spalte1="base name of files:"; spalte2=$fname
2169	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2170	if [[ $fname != $afname ]]
2171	then
2172	spalte1="base name of input files:"; spalte2=$afname
2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2174	fi
2175	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2176	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2177	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2179
2180	if [[ "$ocean_file_appendix" = true ]]
2181	then
2182	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2183	fi
2184
2185	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2186	then
2187	spalte1="memory demand / PE":; spalte2="$memory MB"
2188	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2189	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2190	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2191	fi
2192
2193	if [[ $do_compile = true ]]
2194	then
2195	printf "\| \| \n"
2196	printf "\| Files to be compiled: \| \n"
2197	zeile=$source_list
2198	while [[ "$zeile" != "" ]]
2199	do
2200	linestart=$(echo $zeile \| cut -c-70)
2201	printf "\| %-70s \| \n" "$linestart"
2202	zeile=$(echo "$zeile" \| cut -c71-)
2203	done
2204	fi
2205	printf "#------------------------------------------------------------------------#"
2206
2207
2208
2209	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2210	if [[ $do_trace = true ]]
2211	then
2212	(( i = 0 ))
2213	while (( i < iin ))
2214	do
2215	(( i = i + 1 ))
2216	if (( i == 1 ))
2217	then
2218	printf "\n\n >>> INPUT-file assignments:\n"
2219	fi
2220	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2221	done
2222	(( i = 0 ))
2223	while (( i < iout ))
2224	do
2225	(( i = i + 1 ))
2226	if (( i == 1 ))
2227	then
2228	printf "\n\n >>> OUTPUT-file assignments:\n"
2229	fi
2230	printf "\n ${localout[$i]} : ${pathout[$i]}"
2231	done
2232	(( i = 0 ))
2233	while (( i < iic ))
2234	do
2235	(( i = i + 1 ))
2236	if (( i == 1 ))
2237	then
2238	printf "\n\n >>> INPUT-commands:\n"
2239	fi
2240	printf "\n ${in_command[$i]}"
2241	done
2242	(( i = 0 ))
2243	while (( i < ioc ))
2244	do
2245	(( i = i + 1 ))
2246	if (( i == 1 ))
2247	then
2248	printf "\n\n >>> OUTPUT-commands:\n"
2249	fi
2250	printf "\n ${out_command[$i]}"
2251	done
2252	fi
2253
2254
2255	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2256	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2257	then
2258	antwort=dummy
2259	printf "\n\n"
2260	printf " >>> everything o.k. (y/n) ? "
2261	while read antwort
2262	do
2263	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2264	then
2265	printf " >>> everything o.k. (y/n) ? "
2266	else
2267	break
2268	fi
2269	done
2270	if [[ $antwort = n \|\| $antwort = N ]]
2271	then
2272	locat=user_abort; (( iec = 0 )); exit
2273	fi
2274	if [[ $do_batch = true ]]
2275	then
2276	printf " >>> batch-job will be created and submitted"
2277	else
2278	if [[ $local_compile = false ]]
2279	then
2280	printf " >>> MRUN will now continue to execute on this machine"
2281	else
2282	printf " >>> a test compilation will now be carried out on this machine"
2283	fi
2284	fi
2285	fi
2286
2287
2288	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2289	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2290	check_depository="${working_directory}/trunk/UTIL"
2291	check_sources="${working_directory}/tmp_check_namelist_files"
2292	skip_check=false
2293
2294	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2295	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2296	then
2297	skip_check=true
2298	reason="run on remote host or parameter file check has not been compiled."
2299	fi
2300	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2301	then
2302	skip_check=true
2303	reason="parameter file check has not been compiled."
2304	fi
2305
2306	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2307	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2308	then
2309	skip_check=true
2310	reason="serial run."
2311	fi
2312
2313	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2314	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2315	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2316	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2317	if [[ $check_namelist_files == false ]]
2318	then
2319	skip_check=true
2320	reason="-z option set."
2321	fi
2322
2323	if [[ $fromhost != $localhost ]]
2324	then
2325	skip_check=true
2326	reason="submitting host is local host."
2327	fi
2328
2329	if [[ $run_coupled_model == true ]]
2330	then
2331	skip_check=true
2332	reason="coupled run."
2333	fi
2334
2335	if [[ $restart_run == true ]]
2336	then
2337	skip_check=true
2338	reason="restart run."
2339	fi
2340
2341	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2342	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2343	last_char=`echo $filename_input \| cut -c $last_char_int`
2344	if [[ "$last_char" == "f" ]]
2345	then
2346	skip_check=true
2347	reason="restart run."
2348	fi
2349
2350	if [[ $skip_check == false ]]
2351	then
2352	tmp_check=${working_directory}/tmp_check
2353
2354	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2355	# NOT NECESSARILY REQUIRED
2356	line=""
2357	found=false
2358	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2359	while read line1
2360	do
2361	line="$line1"
2362	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2363	then
2364	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2365	found=true
2366	fi
2367	done < $tmp_check
2368
2369	if [[ $found = false ]]
2370	then
2371	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2372	fi
2373
2374	rm -rf ${working_directory}/tmp_check
2375
2376	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2377	for item in $input_list
2378	do
2379	if [[ "$item" == "restart" ]]
2380	then
2381	check_restart=1
2382	else
2383	check_restart=0
2384	fi
2385	done
2386
2387	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2388	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2389	then
2390	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2391	locat=check_namelist; exit
2392	fi
2393
2394	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2395	if [[ $check_restart == 1 ]]
2396	then
2397
2398	filenamef="${filename_input}f"
2399	if [[ ! -f $filenamef ]]
2400	then
2401	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2402	check_restart=0
2403	answer=dummy
2404	printf "\n\n"
2405
2406	if [[ $silent == false ]]
2407	then
2408	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2409	do
2410	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2411	read answer
2412	done
2413	if [[ $answer = a \|\| $answer = A ]]
2414	then
2415	printf "\n +++ Aborting...."
2416	locat=normal; exit
2417	fi
2418	fi
2419	else
2420	check_restart=1
2421	fi
2422	fi
2423
2424	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2425	mkdir $check_sources
2426	cd $check_sources
2427
2428
2429	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2430	if [[ -d $add_source_path ]]
2431	then
2432	printf "\n\n *** copying files from $check_depository"
2433	cp $check_depository/check_namelist_files.tar ./
2434
2435	printf "\n\n *** untar of makefile and source files in $check_sources"
2436	tar -xf check_namelist_files.tar > /dev/null 2>&1
2437
2438	printf "\n\n *** adding user code."
2439	cp $add_source_path/* ./
2440	touch check_namelist_files.f90
2441
2442	# GET COMPILER OPTIONS AND PERFORM MAKE
2443	printf "\n\n *** compiling code if necessary...\n"
2444
2445	# workaround for batch jobs on local machine (lcxe6)
2446	if [[ $do_batch == true && $do_remote == false ]]
2447	then
2448	eval $init_cmds
2449	fi
2450
2451	# GET CHECK OPTIONS
2452	line=""
2453	found=false
2454
2455	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2456
2457	while read line1
2458	do
2459
2460	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2461	then
2462	line="$line1"
2463	fi
2464
2465	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2466	then
2467	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2468	line="$line "
2469	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2470	found=true
2471	fi
2472
2473	done < $tmp_check
2474	copts_check="$copts_check -D__check -D__parallel"
2475
2476	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2477
2478	# GET MAKE OUTPUT
2479	if [[ $? != 0 ]]
2480	then
2481	printf "\n +++ error during make."
2482	answer=dummy
2483	printf "\n\n"
2484	if [[ $silent == false ]]
2485	then
2486	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2487	do
2488	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2489	read answer
2490	done
2491	if [[ $answer = a \|\| $answer = A ]]
2492	then
2493	printf "\n +++ Aborting..."
2494	rm -rf $check_sources
2495	locat=normal; exit
2496	else
2497	skip_check=true
2498	fi
2499	else
2500	skip_check=true
2501	fi
2502	fi
2503	else
2504	cp $PALM_BIN/check_namelist_files.x ./
2505	fi
2506
2507	cp $filename_input ./PARIN
2508	if [[ $check_restart == 1 ]]
2509	then
2510	cp $filenamef ./PARINF
2511	fi
2512
2513	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2514	then
2515	printf "\n *** adding topography data"
2516	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2517
2518	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2519	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2520	# WHICH REQUIRE SUFFICIENT MEMORY
2521	ulimit -s unlimited
2522	fi
2523
2524	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2525	cat > ENVPAR << %%END%%
2526	&envpar run_identifier = '$fname', host = '$host',
2527	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2528	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2529	maximum_cpu_time_allowed = ${cpumax}.,
2530	revision = '$global_revision',
2531	local_dvrserver_running = $local_dvrserver_running /
2532
2533	%%END%%
2534
2535	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2536	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2537	then
2538	printf "\n +++ WARNING: check_namelist_files.x not found."
2539	answer=dummy
2540	printf "\n\n"
2541
2542	if [[ $silent == false ]]
2543	then
2544	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2545	do
2546	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2547	read answer
2548	done
2549	if [[ $answer = a \|\| $answer = A ]]
2550	then
2551	printf "\n +++ Aborting..."
2552	rm -rf $check_sources
2553	locat=normal; exit
2554	else
2555	printf "\n *** skipping parameter file check."
2556	fi
2557	fi
2558
2559	elif [[ $skip_check == false ]]
2560	then
2561	# STARTING THE PARAMETER FILE CHECK
2562	printf "\n\n *** starting parameter file check..."
2563
2564	# CHECKING THE P3D FILE
2565	printf "\n\n (1) checking $filename_input"
2566	echo "$numprocs 0 0" > VARIN
2567	errors=`./check_namelist_files.x < VARIN 2>&1`
2568
2569	check_error=false
2570	if [[ "$errors" == "" ]]
2571	then
2572	printf " --> o.k."
2573	else
2574	printf " --> failed."
2575	check_error=true
2576	printf "\n\n $errors"
2577	fi
2578
2579	# CHECKING THE PD3F FILE IF NECESSARY
2580	if [[ $check_restart == 1 && $check_error == false ]]
2581	then
2582	printf "\n\n (2) checking $filenamef"
2583
2584	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2585	# IN &INIPAR LIST
2586	found=false
2587	cat PARINF \| while read line
2588	do
2589	line=$(echo $line\|sed 's/ //g')
2590	if [[ $line == "&inipar" ]]
2591	then
2592	start_search=true
2593	fi
2594
2595	if [[ $start_search == true ]]
2596	then
2597	if [[ $line == "initializing_actions='read_restart_data'" ]]
2598	then
2599	found=true
2600	break
2601	fi
2602	fi
2603
2604	if [[ $line == "/" ]]
2605	then
2606	start_search=false
2607	fi
2608
2609	done
2610
2611	if [[ $found = false ]]
2612	then
2613	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2614	printf "\n in &inipar list in $fname$p3df_suffix."
2615	rm -rf $check_sources
2616	locat=check_namelist; exit
2617	fi
2618
2619	# READ max_user_pr FROM FILES
2620	if [[ -f parin_for_check ]]
2621	then
2622	read max_pr_user < parin_for_check
2623	else
2624	max_user_pr=0
2625	fi
2626
2627	echo "$numprocs 1 $max_pr_user" > VARIN
2628	errors=`./check_namelist_files.x < VARIN 2>&1`
2629
2630	if [[ "$errors" == "" ]]
2631	then
2632	printf " --> o.k."
2633	else
2634	printf " --> failed."
2635	check_error=true
2636	printf "\n\n $errors"
2637	fi
2638	fi
2639
2640	# REPORT ERRORS AND CONTINUE/EXIT
2641	if [[ $check_error == true ]]
2642	then
2643	printf "\n +++ errors found in the parameter file!\n"
2644	answer=dummy
2645	printf "\n\n"
2646
2647	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2648	do
2649	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2650	read answer
2651	done
2652
2653	if [[ $answer = a \|\| $answer = A ]]
2654	then
2655	printf "\n +++ Aborting..."
2656	rm -rf $check_sources
2657	locat=normal; exit
2658	fi
2659	else
2660	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2661	fi
2662	rm -rf $check_sources
2663	fi
2664	else
2665	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2666	fi
2667
2668	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2669	rm -rf $check_sources
2670	cd $working_directory
2671
2672
2673	# DETERMINE PATH FOR MAKE DEPOSITORY
2674	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2675	then
2676
2677	line=""
2678	grep "%depository_path" $config_file > tmp_mrun
2679	while read line
2680	do
2681	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2682	then
2683	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2684	then
2685	global_depository_path=`echo $line \| cut -d" " -s -f2`
2686	fi
2687	fi
2688	done < tmp_mrun
2689
2690	line=""
2691	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2692	while read line
2693	do
2694	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2695	then
2696	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2697	then
2698	local_depository_path=`echo $line \| cut -d" " -s -f2`
2699	fi
2700	fi
2701	done < tmp_mrun
2702
2703	if [[ "$local_depository_path" = "" ]]
2704	then
2705	if [[ "$global_depository_path" != "" ]]
2706	then
2707	local_depository_path=$global_depository_path
2708	else
2709	printf "\n\n +++ no depository path found in configuration file"
2710	printf "\n for local host \"$localhost\" "
2711	printf "\n please set \"\%depository_path\" in configuration file\n"
2712	locat=config_file; exit
2713	fi
2714	fi
2715	eval local_depository_path=$local_depository_path
2716	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2717	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2718
2719
2720	basename=`echo $mainprog \| cut -f1 -d"."`
2721	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2722	if [[ ! -f $make_depository ]]
2723	then
2724	printf "\n"
2725	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2726	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2727	fi
2728
2729	fi
2730
2731
2732	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2733	# CHENDE AKTIONEN DURCHGEFUEHRT
2734	if [[ $do_batch = false ]]
2735	then
2736
2737
2738	# TEMPORAEREN KATALOG ERZEUGEN
2739	mkdir -p $TEMPDIR
2740	chmod go+rx $TEMPDIR
2741	tmpcreate=true
2742
2743
2744	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2745	# TEMPORAERES VERZEICHNIS KOPIEREN
2746	if [[ $do_compile = true ]]
2747	then
2748
2749	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2750	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2751	if [[ $localhost = nech ]]
2752	then
2753	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2754	if mkdir -p $TEMPDIR_COMPILE
2755	then
2756	printf "\n *** \"$TEMPDIR_COMPILE\" "
2757	printf "\n is generated as temporary directory for cross compiling\n"
2758	else
2759	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2760	printf "\n needed for cross compilation failed"
2761	locat=compile
2762	exit
2763	fi
2764	else
2765	TEMPDIR_COMPILE=$TEMPDIR
2766	fi
2767
2768	cp $make_depository $TEMPDIR_COMPILE
2769	cd $TEMPDIR_COMPILE
2770	tar -xf $make_depository > /dev/null 2>&1
2771	cd - > /dev/null
2772
2773	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2774
2775	else
2776
2777	cp $executable ${TEMPDIR}/a.out
2778
2779	fi
2780
2781
2782	# WECHSEL IN TEMPORAEREN KATALOG
2783	cd $TEMPDIR
2784	printf "\n *** changed to temporary directory: $TEMPDIR"
2785
2786
2787	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2788	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2789	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2790	# ERMITTELN
2791	(( i = 0 ))
2792	while (( i < iout ))
2793	do
2794	(( i = i + 1 ))
2795	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2796	then
2797	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2798	else
2799	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2800	fi
2801	done
2802
2803
2804	# IF REQUIRED, START WITH COMPILING ACTIONS
2805	if [[ $do_compile = true ]]
2806	then
2807
2808
2809	if [[ -f a.out ]]
2810	then
2811
2812	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2813	printf "\n\n\n *** executable a.out found"
2814	printf "\n no compilation required \n"
2815
2816	else
2817
2818	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2819	printf "\n\n\n *** compilation starts \n$striche\n"
2820	printf " *** compilation with make using following options:\n"
2821	printf " make depository: $make_depository"
2822	if [[ "$mopts" != "" ]]
2823	then
2824	printf " make options: $mopts\n"
2825	fi
2826	printf " compilername: $compiler_name\n"
2827	printf " compiler options: $fopts\n"
2828	printf " preprocessor directives: $cpp_options \n"
2829	printf " linker options: $lopts \n"
2830	if [[ "$modules" != "" ]]
2831	then
2832	printf " modules to be load: $modules \n"
2833	fi
2834	printf " source code files: $source_list \n"
2835
2836	if [[ $localhost = nech ]]
2837	then
2838	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2839	cp $TEMPDIR_COMPILE/a.out .
2840	[[ $? != 0 ]] && compile_error=true
2841	rm -rf $TEMPDIR_COMPILE
2842	elif [[ $localhost = ibmh ]]
2843	then
2844	printf " compiler is called via ssh on \"plogin1\" \n"
2845	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2846	[[ ! -f a.out ]] && compile_error=true
2847	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2848	elif [[ $localhost = lcsgib ]]
2849	then
2850	printf " compiler is called via ssh on \"bicegate0\" \n"
2851	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2852	[[ ! -f a.out ]] && compile_error=true
2853	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2854	elif [[ $localhost = lcsgih ]]
2855	then
2856	printf " compiler is called via ssh on \"hicegate0\" \n"
2857	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2858	[[ ! -f a.out ]] && compile_error=true
2859	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2860	elif [[ $localhost = lcflow ]]
2861	then
2862	printf " compiler is called via ssh on \"flow\" \n"
2863	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2864	[[ ! -f a.out ]] && compile_error=true
2865	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2866	elif [[ $localhost = lccrayf ]]
2867	then
2868	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2869	else
2870	[[ "$init_cmds" != "" ]] && eval $init_cmds
2871	[[ "$module_calls" != "" ]] && eval $module_calls
2872	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2873	fi
2874
2875	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2876	then
2877	printf "\n +++ error occured while compiling or linking"
2878	locat=compile
2879
2880	exit
2881	else
2882	printf "$striche\n *** compilation finished \n"
2883	fi
2884
2885	fi
2886
2887	fi
2888
2889
2890	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2891	if [[ $local_compile = true ]]
2892	then
2893	cd $HOME
2894	rm -rf $TEMPDIR
2895	locat=local_compile; exit
2896	fi
2897
2898
2899	# BEREITSTELLEN DER INPUT-DATEIEN
2900	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2901	(( i = 0 ))
2902	while (( i < iin ))
2903	do
2904	(( i = i + 1 ))
2905	if (( i == 1 ))
2906	then
2907	printf "\n\n *** providing INPUT-files:\n$striche"
2908	fi
2909
2910
2911	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2912	if [[ "${transin[$i]}" = unavailable ]]
2913	then
2914	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2915	then
2916	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2917	printf "\n is not available!"
2918	else
2919	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2920	printf "\n is not available!"
2921	fi
2922	continue
2923	fi
2924
2925	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2926	files_for_pes=false; datentyp=file
2927	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2928	then
2929	files_for_pes=true; datentyp=directory
2930	actionin[$i]=""
2931	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2932	then
2933	actionin[$i]=""
2934	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2935	then
2936	files_for_pes=true; datentyp=directory
2937	actionin[$i]="ar"
2938	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2939	then
2940	actionin[$i]="ar"
2941	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2942	then
2943	files_for_pes=true; datentyp=directory
2944	actionin[$i]="fl"
2945	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2946	then
2947	actionin[$i]="fl"
2948	fi
2949
2950	if [[ $files_for_pes = true ]]
2951	then
2952	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2953	else
2954	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2955	fi
2956
2957	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2958	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2959	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2960	# SERVER ZU HOLEN
2961	if [[ "${actionin[$i]}" = fl ]]
2962	then
2963	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2964	if [[ $files_for_pes = false ]]
2965	then
2966	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2967	then
2968	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2969	got_tmp[$i]=true
2970	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2971	then
2972	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2973	printf "\n *** trying to use backup copy in \"$WORK\" "
2974	cp $WORK/${frelin[$i]} ${localin[$i]}
2975	else
2976	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2977	printf "\n or \"$tmp_data_catalog\" does not exist!"
2978	printf "\n *** trying to get copy from archive"
2979	actionin[$i]=ar
2980	fi
2981	else
2982	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2983	then
2984	mkdir ${localin[$i]}
2985	cd $tmp_data_catalog/${frelin[$i]}
2986	for file in $(ls *)
2987	do
2988	ln $file $TEMPDIR/${localin[$i]}
2989	done
2990	cd $TEMPDIR
2991	got_tmp[$i]=true
2992	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2993	then
2994	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2995	printf "\n *** trying to use backup copy in \"$WORK\" "
2996	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2997	else
2998	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2999	printf "\n or \"$tmp_data_catalog\" does not exist!"
3000	printf "\n *** trying to get copy from archive"
3001	actionin[$i]=ar
3002	fi
3003	fi
3004	fi
3005
3006
3007	# DATEI LIEGT AUF ARCHIV-SERVER
3008	if [[ "${actionin[$i]}" = ar ]]
3009	then
3010
3011	if [[ $files_for_pes = false ]]
3012	then
3013	printf "\n file will be restored from archive-system ($archive_system)!"
3014	else
3015	printf "\n directory will be restored from archive-system ($archive_system)!"
3016	fi
3017
3018	file_restored=false
3019
3020	if [[ $archive_system = asterix ]]
3021	then
3022	do_stagein=true
3023	(( stagein_anz = 0 ))
3024	while [[ $do_stagein = true ]]
3025	do
3026	if [[ $files_for_pes = false ]]
3027	then
3028	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3029	else
3030	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3031	fi
3032	cat STAGEIN_OUTPUT
3033	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3034	then
3035	file_restored=true
3036	do_stagein=false
3037	else
3038	(( stagein_anz = stagein_anz + 1 ))
3039	if (( stagein_anz == 10 ))
3040	then
3041	printf "\n +++ stagein stoped after 10 tries"
3042	locat=stage
3043	exit
3044	fi
3045	printf "\n +++ restoring from archive failed, trying again:"
3046	sleep 900
3047	fi
3048	done
3049	elif [[ $archive_system = DMF ]]
3050	then
3051	if [[ $files_for_pes = false ]]
3052	then
3053	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3054	locat=DMF
3055	exit
3056	else
3057	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3058	cp -r $ARCHIVE/${frelin[$i]} $PWD
3059	file_restored=true
3060	fi
3061	elif [[ $archive_system = tivoli ]]
3062	then
3063	if [[ $files_for_pes = false ]]
3064	then
3065	if [[ $localhost = lcsgih ]]
3066	then
3067	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3068	else
3069	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3070	fi
3071	else
3072	(( inode = 0 ))
3073	while (( inode < nodes ))
3074	do
3075	if [[ $localhost = lcsgih ]]
3076	then
3077	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3078	else
3079	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3080	fi
3081	(( inode = inode + 1 ))
3082	done
3083	fi
3084	file_restored=true
3085	elif [[ $archive_system = ut ]]
3086	then
3087	if [[ $files_for_pes = false ]]
3088	then
3089	cp $UT/${frelin[$i]} .
3090	else
3091	(( inode = 0 ))
3092	while (( inode < nodes ))
3093	do
3094	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3095	(( inode = inode + 1 ))
3096	done
3097	fi
3098	file_restored=true
3099	else
3100	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3101	locat=rearchive
3102	exit
3103	fi
3104
3105	if [[ $file_restored = true ]]
3106	then
3107
3108	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3109	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3110	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3111	if [[ $files_for_pes = false ]]
3112	then
3113	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3114	else
3115	mkdir $tmp_data_catalog/${frelin[$i]}
3116	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3117	fi
3118	got_tmp[$i]=true
3119
3120	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3121	mv ${frelin[$i]} ${localin[$i]}
3122
3123	fi
3124	fi
3125
3126
3127	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3128	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3129	then
3130
3131	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3132	then
3133
3134	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3135	printf "\n file will be provided for $numprocs processors"
3136	mkdir ${localin[$i]}
3137	ival=$numprocs
3138	(( ii = 0 ))
3139	while (( ii <= ival-1 ))
3140	do
3141	if (( ii < 10 ))
3142	then
3143	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3144	elif (( ii < 100 ))
3145	then
3146	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3147	elif (( ii < 1000 ))
3148	then
3149	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3150	else
3151	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3152	fi
3153	(( ii = ii + 1 ))
3154	done
3155
3156	else
3157
3158	if [[ $files_for_pes = true ]]
3159	then
3160
3161	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3162	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3163	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3164	# PER MOVE UMBENANNT WERDEN
3165	printf "\n providing $numprocs files for the respective processors"
3166	mkdir ${localin[$i]}
3167	if [[ $link_local_input = true ]]
3168	then
3169	printf " using ln -f\n"
3170	cd ${absnamein[$i]}
3171	for file in $(ls *)
3172	do
3173	ln -f $file ${localin[$i]}
3174	done
3175	cd $TEMPDIR
3176	fi
3177	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3178	if [[ ! -f "${localin[$i]}/_0000" ]]
3179	then
3180	if [[ $link_local_input = true ]]
3181	then
3182	printf " ln failed for .../_0000, using cp...\n"
3183	fi
3184	cp -r ${absnamein[$i]}/* ${localin[$i]}
3185	fi
3186
3187	else
3188	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3189	if [[ $link_local_input = true ]]
3190	then
3191	printf " using ln -f\n"
3192	ln -f ${absnamein[$i]} ${localin[$i]}
3193	fi
3194	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3195	if [[ ! -f "${localin[$i]}" ]]
3196	then
3197	if [[ $link_local_input = true ]]
3198	then
3199	printf " ln failed, using cp...\n"
3200	fi
3201	cp ${absnamein[$i]} ${localin[$i]}
3202	fi
3203	fi
3204	fi
3205	fi
3206
3207	done
3208	if (( i != 0 ))
3209	then
3210	printf "\n$striche\n *** all INPUT-files provided \n"
3211	fi
3212
3213
3214	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3215	(( i = 0 ))
3216	while (( i < iic ))
3217	do
3218	(( i = i + 1 ))
3219	if (( i == 1 ))
3220	then
3221	printf "\n\n *** execution of INPUT-commands:\n$striche"
3222	fi
3223	printf "\n >>> ${in_command[$i]}"
3224	eval ${in_command[$i]}
3225	if (( i == iic ))
3226	then
3227	printf "\n$striche\n"
3228	fi
3229	done
3230
3231
3232	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3233	cpurest=${cpumax}.
3234
3235
3236	# START DVR STREAMING SERVER
3237	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3238	then
3239	if [[ "$dvr_server" != "" ]]
3240	then
3241
3242	printf "\n\n *** preparing the dvr streaming server configuration file"
3243
3244	# Check, if a dvr server is already running
3245	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3246	if [[ "$running_dvrserver_id" != "" ]]
3247	then
3248
3249	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3250	printf "\n This server is used instead starting a new one!"
3251	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3252
3253	else
3254
3255	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3256	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3257	then
3258	cp ${PALM_BIN}/.dvrserver.config .
3259
3260	# Entering the BASEDIR, UID and GID into this file
3261	user_id=`id -u`
3262	group_id=`id -g`
3263	# & is needed as seperator, because TEMPDIR contains /
3264	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3265	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3266	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3267	mv .dvrserver.3 .dvrserver.config
3268	rm .dvrserver.1 .dvrserver.2
3269
3270	# Start dvr server in background, get his id and print on terminal
3271	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3272	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3273	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3274	local_dvrserver_running=.TRUE.
3275	else
3276	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3277	printf "\n \"$PALM_BIN\" "
3278	locat=dvr
3279	exit
3280	fi
3281
3282	fi
3283
3284	else
3285	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3286	fi
3287	fi
3288
3289
3290	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3291	# LESEN VON PALM)
3292	cat > ENVPAR << %%END%%
3293	&envpar run_identifier = '$fname', host = '$localhost',
3294	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3295	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3296	maximum_cpu_time_allowed = ${cpumax}.,
3297	revision = '$global_revision',
3298	local_dvrserver_running = $local_dvrserver_running /
3299
3300	%%END%%
3301
3302
3303	# PROGRAMMSTART
3304	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3305	PATH=$PATH:$TEMPDIR
3306
3307	# MPI debug option (argument checking, slows down execution due to increased latency)
3308	if [[ "$mpi_debug" = true ]]
3309	then
3310	export MPI_CHECK_ARGS=1
3311	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3312	fi
3313
3314	if [[ "$totalview" = true ]]
3315	then
3316	printf "\n *** totalview debugger will be used"
3317	tv_opt="-tv"
3318	else
3319	tv_opt=""
3320	fi
3321
3322	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3323	then
3324	if [[ "$ENVIRONMENT" = BATCH ]]
3325	then
3326	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3327	then
3328	printf "\n +++ debug is allowed in interactive mode only"
3329	locat=debug
3330	exit
3331	fi
3332	fi
3333	if [[ $localhost = ibmh ]]
3334	then
3335
3336	# SETUP THE IBM MPI ENVIRONMENT
3337	export MP_SHARED_MEMORY=yes
3338	export AIXTHREADS_SCOPE=S
3339	export OMP_NUM_THREADS=$threads_per_task
3340	export AUTHSTATE=files
3341	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3342
3343	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3344	export MP_ADAPTER_USE=shared
3345	export MP_CPU_USE=multiple
3346	export MP_TIMEOUT=1200
3347
3348	unset MP_TASK_AFFINITY
3349
3350	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3351	#(( ii = 1 ))
3352	#while (( ii <= $numprocs ))
3353	#do
3354	# echo $localhost_realname >> hostfile
3355	# (( ii = ii + 1 ))
3356	#done
3357	#export MP_HOSTFILE=hostfile
3358
3359	if [[ "$LOADLBATCH" = yes ]]
3360	then
3361	totalview poe a.out $ROPTS
3362	else
3363	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3364	export TVDSVRLAUNCHCMD=ssh
3365	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3366	fi
3367	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3368	then
3369	# CURRENTLY NO DEBUGGER ON LCSGI
3370	if [[ $run_coupled_model = true ]]
3371	then
3372	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3373	locat=debug
3374	exit
3375	else
3376	echo "no_coupling" > runfile_atmos
3377	fi
3378	(( ii = $numprocs / $threads_per_task ))
3379	export OMP_NUM_THREADS=$threads_per_task
3380	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3381	if [[ $threads_per_task != 1 ]]
3382	then
3383	printf "\n threads per task: $threads_per_task"
3384	fi
3385	printf "\n\n"
3386	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3387	then
3388	# export MPI_LAUNCH_TIMEOUT=360
3389	if [[ "$totalview" = true ]]
3390	then
3391	printf "\n running totalview debugger"
3392	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3393	else
3394	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3395	fi
3396	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3397	then
3398	# ulimit -s 300000 # A too large stack size causes problems
3399	# export MV2_NUM_PORTS=2
3400	# export MV2_CPU_MAPPING=0:1:2:3
3401	if [[ "$totalview" = true ]]
3402	then
3403	printf "\n running totalview debugger"
3404	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3405	else
3406	mpiexec ./a.out $ROPTS < runfile_atmos
3407	fi
3408	fi
3409	else
3410	printf "\n +++ no debug available on \"$localhost\" "
3411	printf "\n or not implemented in mrun so far"
3412	locat=debug
3413	exit
3414	fi
3415
3416	# end debug mode
3417	else
3418
3419	# normal execution
3420	if [[ -n $numprocs ]]
3421	then
3422	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3423	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3424	then
3425	# SETUP THE IBM MPI ENVIRONMENT
3426	if [[ $host != ibmh && $host != ibmkisti ]]
3427	then
3428	export MP_SHARED_MEMORY=yes
3429	export AIXTHREAD_SCOPE=S
3430	export OMP_NUM_THREADS=$threads_per_task
3431	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3432	export AUTHSTATE=files
3433	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3434	# export MP_PRINTENV=yes
3435
3436	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3437	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3438	export MP_WAIT_MODE=poll
3439	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3440	fi
3441
3442	if [[ $host = ibmkisti ]]
3443	then
3444	export LANG=en_US
3445	export MP_SHARED_MEMORY=yes
3446	if [[ $threads_per_task = 1 ]]
3447	then
3448	export MP_SINGLE_THREAD=yes
3449	export MEMORY_AFFINITY=MCM
3450	else
3451	export OMP_NUM_THREADS=$threads_per_task
3452	fi
3453	fi
3454
3455	if [[ "$LOADLBATCH" = yes ]]
3456	then
3457	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3458	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3459	then
3460	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3461	else
3462	if [[ $run_coupled_model = false ]]
3463	then
3464	if [[ "$ocean_file_appendix" = true ]]
3465	then
3466	echo "precursor_ocean" > runfile_atmos
3467	else
3468	echo "precursor_atmos" > runfile_atmos
3469	fi
3470	else
3471	(( iia = $numprocs_atmos / $threads_per_task ))
3472	(( iio = $numprocs_ocean / $threads_per_task ))
3473	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3474	printf "\n using $coupled_mode coupling"
3475	printf "\n\n"
3476	echo "coupled_run $iia $iio" > runfile_atmos
3477	fi
3478	poe ./a.out $ROPTS < runfile_atmos
3479	fi
3480	else
3481	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3482	then
3483	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3484	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3485	then
3486	if [[ -f $hostfile ]]
3487	then
3488	cp $hostfile hostfile
3489	else
3490	(( ii = 1 ))
3491	while (( ii <= $numprocs ))
3492	do
3493	echo $localhost_realname >> hostfile
3494	(( ii = ii + 1 ))
3495	done
3496	fi
3497	export MP_HOSTFILE=hostfile
3498	if [[ $run_coupled_model = false ]]
3499	then
3500	if [[ "$ocean_file_appendix" = true ]]
3501	then
3502	echo "precursor_ocean" > runfile_atmos
3503	else
3504	echo "precursor_atmos" > runfile_atmos
3505	fi
3506	else
3507	(( iia = $numprocs_atmos / $threads_per_task ))
3508	(( iio = $numprocs_ocean / $threads_per_task ))
3509	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3510	printf "\n using $coupled_mode coupling"
3511	printf "\n\n"
3512	echo "coupled_run $iia $iio" > runfile_atmos
3513	fi
3514	if [[ $localhost = ibmy ]]
3515	then
3516	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3517	else
3518	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3519	fi
3520
3521	else
3522	if [[ "$host_file" = "" ]]
3523	then
3524	printf "\n +++ no hostfile given in configuration file"
3525	locat=config_file
3526	exit
3527	else
3528	eval host_file=$host_file
3529	fi
3530	export MP_HOSTFILE=$host_file
3531	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3532	fi
3533	fi
3534	elif [[ $host = nech \|\| $host = necriam ]]
3535	then
3536	(( ii = nodes ))
3537	if [[ $ii = 1 ]]
3538	then
3539	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3540	export MPIPROGINF=YES
3541	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3542	echo "*** execution on single node with mpirun"
3543	mpirun -np $numprocs ./a.out $ROPTS
3544	else
3545	(( i = 0 ))
3546	while (( i < ii ))
3547	do
3548	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3549	(( i = i + 1 ))
3550	done
3551
3552	echo "#!/bin/sh" > mpi_exec_shell
3553	echo " " >> mpi_exec_shell
3554	echo "set -u" >> mpi_exec_shell
3555	echo "F_ERRCNT=0" >> mpi_exec_shell
3556	echo "MPIPROGINV=YES" >> mpi_exec_shell
3557	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3558	echo "cpurest=$cpurest" >> mpi_exec_shell
3559	echo "fname=$fname" >> mpi_exec_shell
3560	echo "localhost=$localhost" >> mpi_exec_shell
3561	echo "return_addres=$return_addres" >> mpi_exec_shell
3562	echo "return_username=$return_username" >> mpi_exec_shell
3563	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3564	echo "write_binary=$write_binary" >> mpi_exec_shell
3565	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3566	echo " " >> mpi_exec_shell
3567	echo "export F_ERRCNT" >> mpi_exec_shell
3568	echo "export MPIPROGINV" >> mpi_exec_shell
3569	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3570	echo "export cpurest" >> mpi_exec_shell
3571	echo "export fname" >> mpi_exec_shell
3572	echo "export localhost" >> mpi_exec_shell
3573	echo "export return_addres" >> mpi_exec_shell
3574	echo "export return_username" >> mpi_exec_shell
3575	echo "export tasks_per_node" >> mpi_exec_shell
3576	echo "export write_binary" >> mpi_exec_shell
3577	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3578	echo " " >> mpi_exec_shell
3579	echo "exec ./a.out" >> mpi_exec_shell
3580
3581	chmod u+x mpi_exec_shell
3582	export MPIPROGINF=YES
3583	mpirun -f multinode_config &
3584	wait
3585
3586	fi
3587	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3588	then
3589
3590	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3591	# DOES NOT EXIST
3592	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3593	then
3594	if [[ -f $hostfile ]]
3595	then
3596	cp $hostfile hostfile
3597	(( ii = $numprocs / $threads_per_task ))
3598	else
3599	(( ii = 1 ))
3600	while (( ii <= $numprocs / $threads_per_task ))
3601	do
3602	echo $localhost_realname >> hostfile
3603	(( ii = ii + 1 ))
3604	done
3605	fi
3606	eval zeile=\"`head -n $ii hostfile`\"
3607	printf "\n *** running on: $zeile"
3608	fi
3609
3610	(( ii = $numprocs / $threads_per_task ))
3611	export OMP_NUM_THREADS=$threads_per_task
3612	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3613	if [[ $threads_per_task != 1 ]]
3614	then
3615	# increase stack size to unlimited, because large runs
3616	# may abort otherwise
3617	ulimit -Ss unlimited
3618	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3619	fi
3620	if [[ $run_coupled_model = false ]]
3621	then
3622	if [[ "$ocean_file_appendix" = true ]]
3623	then
3624	echo "precursor_ocean" > runfile_atmos
3625	else
3626	echo "precursor_atmos" > runfile_atmos
3627	fi
3628	printf "\n\n"
3629	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3630	then
3631	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3632	then
3633	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3634	# export MPI_DSM_DISTRIBUTE=1
3635	# MPI_DSM_CPULIST: pin MPI processes to cores
3636	if [[ $use_openmp = false ]]
3637	then
3638	if [[ "$sgi_feature" = ice2 ]]
3639	then
3640	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3641	else
3642	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3643	fi
3644	else
3645	unset MPI_DSM_CPULIST
3646	fi
3647	# MPI_IB_RAILS: use both IB rails on ICE2
3648	export MPI_BUFS_PER_HOST=512
3649	export MPI_IB_RAILS=2
3650	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3651	export MPI_CONNECTIONS_THRESHOLD=8192
3652	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3653	export MPI_TYPE_DEPTH=20
3654	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3655	export MPI_GROUP_MAX=64
3656	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3657	if [[ $use_openmp = true ]]
3658	then
3659	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3660	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3661	else
3662	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3663	fi
3664
3665	# next is test for openmp usage
3666	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3667	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3668	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3669	then
3670	export MV2_NUM_PORTS=2
3671	# The default setting of MV2_CPU_MAPPING gives best results
3672	# export MV2_ENABLE_AFFINITY=1
3673	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3674	# if [[ "$sgi_feature" = ice2 ]]
3675	# then
3676	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3677	# else
3678	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3679	# fi
3680	if [[ $use_openmp = true ]]
3681	then
3682	unset MV2_CPU_MAPPING
3683	export MV2_ENABLE_AFFINITY=0
3684	fi
3685	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3686	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3687	if [[ $use_openmp = true ]]
3688	then
3689	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3690	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3691	else
3692	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3693	fi
3694	elif [[ "$mpilib" = impi ]]
3695	then
3696	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3697	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3698	fi
3699	elif [[ $host = lccrayb ]]
3700	then
3701	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3702	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3703	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3704	elif [[ $host = lccrayf ]]
3705	then
3706	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3707	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3708	then
3709	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3710	elif [[ $host = lcflow ]]
3711	then
3712	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3713	elif [[ $host = lcsb ]]
3714	then
3715	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3716	elif [[ $host = lckiaps ]]
3717	then
3718	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3719	elif [[ $host = lckyu* ]]
3720	then
3721	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3722	else
3723	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3724	fi
3725	else
3726
3727	# currently there is no full MPI-2 support on ICE and XT4
3728	(( iia = $numprocs_atmos / $threads_per_task ))
3729	(( iio = $numprocs_ocean / $threads_per_task ))
3730	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3731	printf "\n using $coupled_mode coupling"
3732	printf "\n\n"
3733
3734	if [[ $coupled_mode = "mpi2" ]]
3735	then
3736	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3737	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3738	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3739	then
3740
3741	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3742	then
3743	# export MPI_LAUNCH_TIMEOUT=360
3744	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3745	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3746	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3747	then
3748	# ulimit -s 300000 # A too large stack size causes problems
3749	# export MV2_NUM_PORTS=2
3750	# export MV2_CPU_MAPPING=0:1:2:3
3751	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3752	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3753	fi
3754
3755	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3756	then
3757
3758	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3759	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3760
3761	else
3762	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3763	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3764	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3765	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3766	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3767	fi
3768	wait
3769
3770	else
3771
3772	echo "coupled_run $iia $iio" > runfile_atmos
3773	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3774	then
3775
3776	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3777	then
3778	# export MPI_LAUNCH_TIMEOUT=360
3779	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3780	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3781	then
3782	# ulimit -s 300000 # A too large stack size causes problems
3783	# export MV2_NUM_PORTS=2
3784	# export MV2_CPU_MAPPING=0:1:2:3
3785	mpiexec ./a.out $ROPTS < runfile_atmos
3786	fi
3787
3788	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3789	then
3790
3791	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3792
3793	elif [[ $host = lck \|\| $host = lckordi ]]
3794	then
3795
3796	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3797
3798	elif [[ $host = lckyu* ]]
3799	then
3800
3801	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3802
3803	fi
3804	wait
3805	fi
3806
3807	fi
3808	elif [[ $host = lckyoto ]]
3809	then
3810	set -xv
3811	export P4_RSHCOMMAND=plesh
3812	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3813	if [[ "$ENVIRONMENT" = BATCH ]]
3814	then
3815	if [[ "$cond2" = fujitsu ]]
3816	then
3817	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3818	elif [[ "cond2" = pgi ]]
3819	then
3820	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3821	else
3822	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3823	fi
3824	else
3825	if [[ "$cond2" = "" ]]
3826	then
3827	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3828	else
3829	mpirun -np $numprocs ./a.out $ROPTS
3830	fi
3831	fi
3832	set +xv
3833	elif [[ $host = lctit ]]
3834	then
3835	export OMP_NUM_THREADS=$threads_per_task
3836	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3837	if [[ "$threads_per_task" != 1 ]]
3838	then
3839	export MV2_ENABLE_AFFINITY=0
3840	fi
3841	echo "----- PBS_NODEFILE content:"
3842	cat $PBS_NODEFILE
3843	echo "-----"
3844	(( ii = $numprocs / $threads_per_task ))
3845	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3846	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3847	else
3848	mpprun -n $numprocs a.out $ROPTS
3849	fi
3850	[[ $? != 0 ]] && execution_error=true
3851
3852
3853	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3854	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3855	then
3856	apprentice
3857	fi
3858	else
3859	a.out $ROPTS
3860	fi
3861	fi
3862	if [[ $? != 0 \|\| $execution_error = true ]]
3863	then
3864
3865	# ABBRUCH BEI LAUFZEITFEHLER
3866	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3867	printf "\n +++ runtime error occured"
3868	locat=execution
3869	exit
3870	else
3871	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3872	printf "\n$striche\n *** execution finished \n"
3873
3874	# Stop the dvr streaming server and process the dvr output in order
3875	# to create dvrs- and html-files containing all streams
3876	if [[ "$dvrserver_id" != "" ]]
3877	then
3878	kill $dvrserver_id
3879	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3880
3881	# If there is a directory, data have been output by the
3882	# streaming server. Otherwise, user has chosen dvrp_output=local
3883	if [[ -d DATA_DVR ]]
3884	then
3885
3886	# Add the current dvr configuration file to the dvr output
3887	# directory
3888	cp .dvrserver.config DATA_DVR
3889
3890	# Process the dvr output (option -s for also generating
3891	# sequence mode data)
3892	process_dvr_output -d DATA_DVR -f $fname -s
3893
3894	else
3895
3896	# Process the local output
3897	process_dvr_output -l -d DATA_DVR -f $fname
3898
3899	fi
3900
3901	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3902	then
3903
3904	# Process dvr output generated in local mode (dvrp_output=local)
3905	process_dvr_output -l -d DATA_DVR -f $fname
3906
3907	fi
3908	fi
3909
3910
3911
3912	# Call of combine_plot_fields in order to merge single files written
3913	# by each PE into one file.
3914	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3915	then
3916	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3917	printf "\n 2d- and/or 3d-data may be incomplete!"
3918	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3919	elif [[ "$combine_plot_fields" == true ]]
3920	then
3921	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3922	combine_plot_fields${block}.x
3923	else
3924	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3925	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3926	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3927	fi
3928
3929
3930
3931	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3932	(( i = 0 ))
3933	while (( i < ioc ))
3934	do
3935	(( i = i + 1 ))
3936	if (( i == 1 ))
3937	then
3938	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3939	fi
3940	printf "\n >>> ${out_command[$i]}"
3941	eval ${out_command[$i]}
3942	if (( i == ioc ))
3943	then
3944	printf "\n$striche\n"
3945	fi
3946	done
3947
3948
3949	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3950	if [[ $do_trace = true ]]
3951	then
3952	printf "\n\n"
3953	ls -al
3954	fi
3955
3956
3957
3958	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3959	(( i = 0 ))
3960	while (( i < iout ))
3961	do
3962	(( i = i + 1 ))
3963	if (( i == 1 ))
3964	then
3965	printf "\n\n *** saving OUTPUT-files:\n$striche"
3966	fi
3967
3968	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3969	files_for_pes=false; filetyp=file
3970	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3971	then
3972	files_for_pes=true; filetyp=directory
3973	actionout[$i]=""
3974	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3975	then
3976	actionout[$i]=""
3977	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3978	then
3979	files_for_pes=true; filetyp=directory
3980	actionout[$i]="ar"
3981	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3982	then
3983	actionout[$i]="ar"
3984	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3985	then
3986	files_for_pes=true; filetyp=directory
3987	actionout[$i]="fl"
3988	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3989	then
3990	actionout[$i]="fl"
3991	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3992	then
3993	files_for_pes=true; filetyp=directory
3994	actionout[$i]="tr"
3995	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3996	then
3997	actionout[$i]="tr"
3998	fi
3999
4000	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4001	then
4002	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4003	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4004	then
4005	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4006	else
4007
4008
4009	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4010	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4011	# REMOTE-RECHNUNGEN
4012	if [[ "${actionout[$i]}" = tr ]]
4013	then
4014	if [[ $localhost != $fromhost ]]
4015	then
4016	if [[ $files_for_pes = false ]]
4017	then
4018	cps=""
4019	cst=""
4020	else
4021	cps=-c
4022	cst="/"
4023	fi
4024	if [[ $localhost = nech ]]
4025	then
4026
4027	# TRANSFER IN EIGENSTAENDIGEM JOB
4028	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4029	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4030	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4031	if [[ $files_for_pes = false ]]
4032	then
4033	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4034	else
4035	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4036	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4037	fi
4038
4039	echo "set -x" > transfer_${localout[$i]}
4040	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4041
4042	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4043	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4044	printf "\n or higher cycle\n"
4045	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4046
4047	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4048
4049	if [[ $localhost = nech ]]
4050	then
4051	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4052	else
4053	if [[ "$LOGNAME" = b323013 ]]
4054	then
4055	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4056	else
4057	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4058	fi
4059	fi
4060
4061	else
4062
4063	# TRANSFER INNERHALB DIESES JOBS
4064	transfer_failed=false
4065	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4066	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4067	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4068	[[ $? != 0 ]] && transfer_failed=true
4069
4070	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4071	# LOKALER MASCHINE ANLEGEN
4072	if [[ $transfer_failed = true ]]
4073	then
4074	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4075	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4076
4077	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4078	# ANLEGEN.
4079	eval local_catalog=${pathout[$i]}
4080	if [[ ! -d $local_catalog ]]
4081	then
4082	printf " *** local directory does not exist. Trying to create:\n"
4083	printf " $local_catalog \n"
4084	mkdir -p $local_catalog
4085	fi
4086	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4087	transfer_problems=true
4088	fi
4089	fi
4090	else
4091
4092	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4093	actionout[$i]=""
4094	fi
4095	fi
4096
4097
4098	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4099	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4100	# REMOTE-RECHNUNGEN
4101	if [[ "${actionout[$i]}" = tra ]]
4102	then
4103	if [[ $localhost != $fromhost ]]
4104	then
4105	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4106	then
4107
4108	# TRANSFER IN EIGENSTAENDIGEM JOB
4109	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4110	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4111	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4112	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4113
4114	echo "set -x" > transfer_${localout[$i]}
4115	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4116
4117	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4118	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4119	printf "\n or higher cycle\n"
4120	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4121
4122	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4123
4124	if [[ $localhost = nech ]]
4125	then
4126	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4127	else
4128	if [[ $LOGNAME = b323013 ]]
4129	then
4130	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4131	else
4132	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4133	fi
4134	fi
4135
4136	else
4137
4138	# TRANSFER INNERHALB DIESES JOBS
4139	transfer_failed=false
4140	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4141	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4142	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4143	[[ $? != 0 ]] && transfer_failed=true
4144
4145	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4146	# LOKALER MASCHINE ANLEGEN
4147	if [[ $transfer_failed = true ]]
4148	then
4149	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4150	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4151
4152	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4153	# ANLEGEN
4154	eval local_catalog=${pathout[$i]}
4155	if [[ ! -d $local_catalog ]]
4156	then
4157	printf " *** local directory does not exist. Trying to create:\n"
4158	printf " $local_catalog \n"
4159	mkdir -p $local_catalog
4160	fi
4161
4162	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4163	transfer_problems=true
4164	fi
4165	fi
4166	else
4167
4168	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4169	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4170	actionout[$i]=a
4171	fi
4172	fi
4173
4174
4175	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4176	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4177	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4178	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4179	if [[ "${actionout[$i]}" = fl ]]
4180	then
4181	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4182	chmod g+rx $tmp_data_catalog
4183	if [[ $files_for_pes = false ]]
4184	then
4185	printf "\n >>> OUTPUT: ${localout[$i]} to"
4186	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4187	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4188	else
4189	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4190	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4191	mkdir $tmp_data_catalog/${frelout[$i]}
4192	cd ${localout[$i]}
4193	for file in $(ls *)
4194	do
4195	ln -f $file $tmp_data_catalog/${frelout[$i]}
4196	done
4197	cd $TEMPDIR
4198	fi
4199
4200
4201	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4202	if [[ $store_on_archive_system = true ]]
4203	then
4204
4205	if [[ $archive_system = asterix ]]
4206	then
4207	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4208	if [[ $files_for_pes = false ]]
4209	then
4210	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4211	else
4212	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4213	fi
4214	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4215	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4216	echo "then" >> archive_${frelout[$i]}
4217	echo " do_stageout=false" >> archive_${frelout[$i]}
4218	echo "else" >> archive_${frelout[$i]}
4219	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4220	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4221	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4222	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4223	if [[ $files_for_pes = false ]]
4224	then
4225	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4226	else
4227	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4228	fi
4229	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4230	echo "fi" >> archive_${frelout[$i]}
4231	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4232	elif [[ $archive_system = DMF ]]
4233	then
4234	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4235	if [[ $files_for_pes = false ]]
4236	then
4237	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4238	locat=DMF
4239	exit
4240	else
4241	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4242	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4243	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4244	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4245	fi
4246	elif [[ $archive_system = tivoli ]]
4247	then
4248	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4249	if [[ $files_for_pes = false ]]
4250	then
4251	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4252	echo "set -x" >> archive_${frelout[$i]}
4253	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4254	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4255	else
4256
4257	echo "set -x" >> archive_${frelout[$i]}
4258	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4259	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4260	cd $tmp_data_catalog
4261	all_files=`ls -1 ${frelout[$i]}/*`
4262	cd - > /dev/null
4263	(( inode = 0 ))
4264	(( tp1 = tasks_per_node + 1 ))
4265	while (( inode < nodes ))
4266	do
4267	# echo "*** all_files = \"$all_files\" "
4268	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4269	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4270	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4271	# echo "*** files = \"$files\" "
4272	# echo "*** all_files = \"$all_files\" "
4273	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4274	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4275	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4276	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4277	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4278	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4279	(( inode = inode + 1 ))
4280	done
4281	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4282	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4283	fi
4284	elif [[ $archive_system = ut ]]
4285	then
4286	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4287	if [[ $files_for_pes = false ]]
4288	then
4289	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4290	echo "set -x" >> archive_${frelout[$i]}
4291	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4292	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4293	else
4294
4295	echo "set -x" >> archive_${frelout[$i]}
4296	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4297	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4298	cd $tmp_data_catalog
4299	all_files=`ls -1 ${frelout[$i]}/*`
4300	cd - > /dev/null
4301	(( inode = 0 ))
4302	(( tp1 = tasks_per_node + 1 ))
4303	while (( inode < nodes ))
4304	do
4305	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4306	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4307	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4308	(( inode = inode + 1 ))
4309	done
4310	fi
4311	elif [[ $archive_system = none ]]
4312	then
4313	printf " +++ archiving on $localhost not available!\n"
4314	fi
4315
4316	if [[ $archive_system != none ]]
4317	then
4318	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4319	then
4320	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4321	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4322	elif [[ $localhost = nech ]]
4323	then
4324	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4325	fi
4326	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4327	fi
4328	else
4329	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4330	fi
4331
4332
4333	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4334	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4335	if [[ $files_for_pes = false ]]
4336	then
4337	cat /dev/null > ${pathout[$i]}
4338	else
4339	mkdir -p ${pathout[$i]}
4340	fi
4341
4342	fi
4343
4344
4345	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4346	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4347	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4348	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4349	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4350	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4351	if [[ "${actionout[$i]}" = ar ]]
4352	then
4353	if [[ $files_for_pes = false ]]
4354	then
4355	printf "\n >>> OUTPUT: ${localout[$i]} to"
4356	printf "\n ${pathout[$i]}"
4357	printf "\n File will be copied to archive-system ($archive_system) !\n"
4358	else
4359	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4360	printf "\n ${pathout[$i]}"
4361	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4362	fi
4363	mv ${localout[$i]} ${frelout[$i]}
4364
4365	file_saved=false
4366
4367	if [[ $archive_system = asterix ]]
4368	then
4369	do_stageout=true
4370	(( stageout_anz = 0 ))
4371	while [[ $do_stageout = true ]]
4372	do
4373	if [[ $files_for_pes = false ]]
4374	then
4375	stageout ${frelout[$i]} > STAGE_OUTPUT
4376	else
4377	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4378	fi
4379	cat STAGE_OUTPUT
4380	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4381	then
4382	file_saved=true
4383	do_stageout=false
4384	else
4385	if [[ $files_for_pes = false ]]
4386	then
4387	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4388	else
4389	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4390	fi
4391	(( stageout_anz = stageout_anz + 1 ))
4392	if (( stageout_anz == 10 ))
4393	then
4394	printf "\n +++ stoped after 10 unsuccessful tries!"
4395	archive_save=false
4396	do_stageout=false
4397	else
4398	printf "\n *** new try to store on archive after 15 min:"
4399	sleep 900
4400	fi
4401	fi
4402	done
4403	elif [[ $archive_system = DMF ]]
4404	then
4405	if [[ $files_for_pes = false ]]
4406	then
4407	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4408	locat=DMF
4409	exit
4410	else
4411	rm -rf $ARCHIVE/${frelout[$i]}
4412	cp -r ${frelout[$i]} $ARCHIVE
4413	fi
4414	file_saved=true
4415	elif [[ $archive_system = tivoli ]]
4416	then
4417	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4418	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4419	# GELEGT WERDEN
4420	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4421	chmod g+rx $tmp_data_catalog
4422	if [[ $files_for_pes = false ]]
4423	then
4424	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4425	else
4426	mkdir $tmp_data_catalog/${frelout[$i]}
4427	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4428	fi
4429
4430	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4431	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4432	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4433	if [[ $files_for_pes = false ]]
4434	then
4435	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4436	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4437	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4438	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4439	else
4440	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4441	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4442	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4443	fi
4444
4445	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4446	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4447	file_saved=true
4448
4449	elif [[ $archive_system = ut ]]
4450	then
4451	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4452	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4453	# GELEGT WERDEN
4454	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4455	chmod g+rx $tmp_data_catalog
4456	if [[ $files_for_pes = false ]]
4457	then
4458	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4459	else
4460	mkdir $tmp_data_catalog/${frelout[$i]}
4461	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4462	fi
4463
4464	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4465	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4466	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4467	if [[ $files_for_pes = false ]]
4468	then
4469	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4470	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4471	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4472	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4473	else
4474	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4475	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4476	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4477	fi
4478
4479	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4480	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4481	file_saved=true
4482
4483	else
4484	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4485	archive_save=false
4486	fi
4487	if [[ $file_saved = true ]]
4488	then
4489	if [[ $files_for_pes = false ]]
4490	then
4491	cat /dev/null > ${pathout[$i]}
4492	else
4493	mkdir -p ${pathout[$i]}
4494	fi
4495	fi
4496	fi
4497
4498	# APPEND AUF LOKALER MASCHINE
4499	if [[ "${actionout[$i]}" = "a" ]]
4500	then
4501	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4502	then
4503	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4504	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4505	else
4506	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4507	cat ${localout[$i]} >> ${pathout[$i]}
4508	fi
4509	fi
4510
4511	# KOPIEREN AUF LOKALER MASCHINE
4512	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4513	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4514	then
4515
4516	# KOPIEREN AUF EINPROZESSORMASCHINE
4517	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4518	then
4519	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4520	if [[ $link_local_output = true ]]
4521	then
4522	printf " using ln -f\n"
4523	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4524	fi
4525	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4526	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4527	then
4528	if [[ $link_local_output = true ]]
4529	then
4530	printf " ln failed, using cp...\n"
4531	fi
4532	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4533	fi
4534	else
4535	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4536	if [[ $link_local_output = true ]]
4537	then
4538	printf " using ln -f\n"
4539	ln -f ${localout[$i]} ${pathout[$i]}
4540	fi
4541	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4542	if [[ ! -f "${pathout[$i]}" ]]
4543	then
4544	if [[ $link_local_output = true ]]
4545	then
4546	printf " ln failed, using cp...\n"
4547	fi
4548	cp ${localout[$i]} ${pathout[$i]}
4549	fi
4550	fi
4551
4552	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4553	then
4554
4555	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4556	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4557	# WIRD DANN KOPIERT
4558	# PER MOVE UMBENANNT WERDEN
4559	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4560	if [[ $link_local_output = true ]]
4561	then
4562	printf " using ln -f\n"
4563	mkdir ${pathout[$i]}
4564	cd ${localout[$i]}
4565	for file in $(ls *)
4566	do
4567	ln -f $file ${pathout[$i]}
4568	done
4569	cd $TEMPDIR
4570	fi
4571	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4572	if [[ ! -f "${pathout[$i]}/_0000" ]]
4573	then
4574	if [[ $link_local_output = true ]]
4575	then
4576	printf " ln failed for .../_0000, using cp...\n"
4577	fi
4578	cp -r ${localout[$i]} ${pathout[$i]}
4579	fi
4580
4581	fi
4582	fi
4583	done
4584	if (( i != 0 ))
4585	then
4586	if [[ $transfer_problems = true ]]
4587	then
4588	printf "\n$striche\n *** OUTPUT-files saved"
4589	printf "\n +++ WARNING: some data transfers failed! \n"
4590	else
4591	printf "\n$striche\n *** all OUTPUT-files saved \n"
4592	fi
4593	fi
4594
4595
4596	# EVENTUELL FOLGEJOB STARTEN
4597	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4598	if [[ -f CONTINUE_RUN ]]
4599	then
4600
4601	if [[ $archive_save = true ]]
4602	then
4603
4604	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4605	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4606	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4607	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4608	# HANDEN
4609	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4610	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4611	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4612	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4613	then
4614	mc=`echo $mc \| sed 's/#/f/g'`
4615	fi
4616
4617
4618	# JOB STARTEN
4619	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4620	echo " $mc"
4621	printf "\n$striche\n"
4622	if [[ $localhost != $fromhost ]]
4623	then
4624
4625	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4626	then
4627	echo "*** ssh will be used to initiate restart-runs!"
4628	echo " return_addres=\"$return_addres\" "
4629	echo " return_username=\"$return_username\" "
4630	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4631	then
4632	if [[ $localhost = ibmh ]]
4633	then
4634	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4635	else
4636	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4637	fi
4638	else
4639	if [[ $localhost = ibmkisti ]]
4640	then
4641	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4642	else
4643	if [[ $localhost = lcflow ]]
4644	then
4645	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4646	else
4647	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4648	fi
4649	fi
4650	fi
4651	else
4652	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4653	locat=restart; exit
4654	fi
4655
4656	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4657	# DER AKTUELLE JOB ENDET
4658	if [[ $queue = special1q ]]
4659	then
4660	sleep 120
4661	else
4662	sleep 30
4663	fi
4664
4665	else
4666
4667	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4668	# RUFEN WERDEN, AUSSER AUF lcfimm
4669	cd $LOCAL_PWD
4670	if [[ $localhost = lcfimm ]]
4671	then
4672	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4673	elif [[ $localhost = lckyuh ]]
4674	then
4675	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4676	printf "\n please restart job manually using command:\n"
4677	printf "\n \"$mc\" "
4678	else
4679	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4680	fi
4681	cd - > /dev/null
4682	fi
4683	if [[ $localhost = lckyuh ]]
4684	then
4685	printf "\n$striche\n *** restart-run to be initiated manually\n"
4686	else
4687	printf "\n$striche\n *** restart-run initiated \n"
4688	fi
4689
4690
4691	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4692	# GEHOLT WORDEN SIND, LOESCHEN
4693	(( i = 0 ))
4694	while (( i < iin ))
4695	do
4696	(( i = i + 1 ))
4697	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4698	then
4699	rm -r $tmp_data_catalog/${frelin[$i]}
4700	fi
4701	done
4702
4703	else
4704
4705	printf "\n +++ no restart-run possible, since errors occured"
4706	printf "\n during the archive process"
4707	fi
4708
4709	fi
4710
4711
4712
4713	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4714	if [[ "$email_notification" != "none" ]]
4715	then
4716
4717	if [[ $localhost != $fromhost ]]
4718	then
4719	if [[ -f CONTINUE_RUN ]]
4720	then
4721	echo "PALM restart run necessary" > email_text
4722	echo "description header of actual run:" >> email_text
4723	cat CONTINUE_RUN >> email_text
4724	echo "mrun-command to restart:" >> email_text
4725	echo "$mc" >> email_text
4726	else
4727	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4728	fi
4729	mail $email_notification < email_text
4730	printf "\n *** email notification sent to \"$email_notification\" "
4731	fi
4732	fi
4733
4734
4735
4736	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4737	cd $HOME
4738	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4739
4740	else
4741
4742
4743	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4744	# CHENDE AKTIONEN DURCHGEFUEHRT
4745
4746	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4747	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4748	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4749	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4750	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4751	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4752	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4753	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4754	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4755	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4756	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4757	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4758	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4759	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4760	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4761	if [[ $use_openmp = true ]]
4762	then
4763	mrun_com=${mrun_com}" -O $threads_per_task"
4764	fi
4765	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4766	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4767	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4768	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4769	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4770	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4771	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4772	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4773	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4774	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4775	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4776	if [[ $do_remote = true ]]
4777	then
4778	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4779	fi
4780
4781
4782	# create executable for batch job
4783	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4784	then
4785
4786	printf "\n *** creating the executable for batch job\n"
4787
4788	# method only works for batch jobs on local hosts
4789	if [[ $host != $localhost ]]
4790	then
4791	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4792	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4793	locat=create_executable; exit
4794	fi
4795
4796	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4797	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4798
4799	cp $make_depository .
4800	tar -xf $make_depository > /dev/null 2>&1
4801	cp ../* . > /dev/null 2>&1
4802
4803	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4804
4805	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4806	then
4807	printf "\n +++ error occured while compiling or linking"
4808	locat=compile
4809	exit
4810	fi
4811
4812	mv a.out ..
4813	cd - > /dev/null 2>&1
4814	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4815
4816	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4817
4818	fi
4819
4820
4821	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4822	jobfile=jobfile.$RANDOM
4823
4824
4825	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4826	echo "mkdir $TEMPDIR" >> $jobfile
4827	echo "cd $TEMPDIR" >> $jobfile
4828
4829
4830	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4831	if [[ $do_trace = true ]]
4832	then
4833	echo "set -x" >> $jobfile
4834	else
4835	echo "set +vx" >> $jobfile
4836	fi
4837
4838
4839	# initialize the environment and load modules
4840	if [[ "$init_cmds" != "" ]]
4841	then
4842	echo "$init_cmds" >> $jobfile
4843	fi
4844	if [[ "$module_calls" != "" ]]
4845	then
4846	echo "$module_calls" >> $jobfile
4847	fi
4848
4849
4850	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4851	# DATEI FUER DEN JOB
4852	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4853	then
4854
4855	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4856	# KOPIEREN
4857	if [[ $restart_run != true ]]
4858	then
4859	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4860	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4861	fi
4862
4863	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4864	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4865	echo "set -x" >> $jobfile
4866	if [[ $host = $localhost ]]
4867	then
4868
4869	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4870	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4871	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4872
4873	else
4874	if [[ $host != ibmkisti ]]
4875	then
4876	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4877	else
4878	# on KISTI's IBM firewall is only opened on interactive node
4879	echo "localdir=\`pwd\`" >> $jobfile
4880	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4881	fi
4882	fi
4883	echo "export SOURCES_COMPLETE=true" >> $jobfile
4884
4885	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4886	# ARBEITSVERZEICHNIS VERSCHIEBEN
4887	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4888	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4889	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4890	echo "execute_mrun=true" >> $jobfile
4891	echo " " >> $jobfile
4892
4893	else
4894
4895	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4896	# SOWIE GEGEBENENFALLS DES MAKEFILES
4897	if [[ $do_compile = true ]]
4898	then
4899
4900	source_catalog=SOURCES_FOR_RUN_$fname
4901
4902	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4903	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4904	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4905	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4906	echo "export SOURCES_COMPLETE=true" >> $jobfile
4907	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4908
4909	for filename in $source_list
4910	do
4911	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4912	echo "cat > $filename << \"%END%\"" >> $jobfile
4913	cat $source_catalog/$filename >> $jobfile
4914	echo " " >> $jobfile
4915	echo "%END%" >> $jobfile
4916	echo " " >> $jobfile
4917	done
4918
4919	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4920	echo "cat > Makefile << \"%END%\"" >> $jobfile
4921	cat $source_catalog/Makefile >> $jobfile
4922	echo " " >> $jobfile
4923	echo "%END%" >> $jobfile
4924	echo " " >> $jobfile
4925
4926	echo "cd - > /dev/null" >> $jobfile
4927
4928	fi
4929
4930
4931	# ABSPEICHERN DER KONFIGURATIONSDATEI
4932	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4933	# Lines with #$ coming from the svn keyword substitution are
4934	# removed from the config file in order to avoid problems
4935	# with the SGE batch system
4936	echo "cat > $config_file << \"%END%\"" >> $jobfile
4937	if [[ $host = lckyuh ]]
4938	then
4939	# no cross compiler on compute node
4940	sed 's/frtpx/frt/g' $config_file >> $jobfile
4941	else
4942	sed 's/#$.*//g' $config_file >> $jobfile
4943	fi
4944	echo "%END%" >> $jobfile
4945	echo " " >> $jobfile
4946
4947
4948	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4949	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4950	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4951	if [[ $host = lckyuh ]]
4952	then
4953	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4954	else
4955	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4956	fi
4957	echo "%END%" >> $jobfile
4958	echo "chmod u+x $mrun_script_name" >> $jobfile
4959	echo "execute_mrun=true" >> $jobfile
4960	echo " " >> $jobfile
4961
4962	fi
4963
4964
4965	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4966	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4967	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4968	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4969	if [[ $do_remote = true ]]
4970	then
4971	(( i = 0 ))
4972	while (( i < iin ))
4973	do
4974	(( i = i + 1 ))
4975	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4976	if [[ "${transin[$i]}" = job ]]
4977	then
4978	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4979	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4980	echo " " >> $jobfile
4981	echo "%END%" >> $jobfile
4982	else
4983	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4984	fi
4985
4986	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4987	echo "if [[ \$? = 1 ]]" >> $jobfile
4988	echo "then" >> $jobfile
4989	echo " echo \" \" " >> $jobfile
4990	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4991	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4992	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4993	echo " execute_mrun=false" >> $jobfile
4994	echo "fi" >> $jobfile
4995	done
4996	fi
4997
4998	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4999	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5000	echo "LOCAL_PWD=$working_directory" >> $jobfile
5001	echo "export LOCAL_PWD" >> $jobfile
5002
5003	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5004	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5005	echo "export LOCAL_MRUN_PATH" >> $jobfile
5006
5007	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5008	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5009	then
5010	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5011	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5012	then
5013	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5014	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5015	fi
5016
5017	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5018	echo "set -x" >> $jobfile
5019	echo "queue=$queue" >> $jobfile
5020	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5021	echo 'ls -al; echo `pwd`' >> $jobfile
5022	echo "cd \$HOME" >> $jobfile
5023	echo "rm -rf $TEMPDIR" >> $jobfile
5024
5025
5026
5027
5028	# JOB PER SUBJOB STARTEN
5029	if [[ $silent = false ]]
5030	then
5031	printf "\n "
5032	else
5033	printf "\n\n"
5034	fi
5035
5036	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5037	rm -rf $jobfile
5038
5039
5040	fi # ENDE REMOTE-TEIL
5041
5042
5043
5044	# ENDE DER PROZEDUR

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