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source: palm/trunk/SCRIPTS/mrun @ 1096

Last change on this file since 1096 was 1096, checked in by raasch, 12 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1096 2013-02-03 02:49:41Z raasch $
29	#
30	# 1094 2013-02-03 01:52:12Z raasch
31	# explicit ssh/scp port can be set in config file with environment variable
32	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
33	# decalpha parts (yonsei) removed
34	#
35	# 2013-02-02 07:06:13Z raasch
36	# adjustments for Kyushu-University computing center (lckyut)
37	#
38	# 1083 2013-01-04 10:22:09Z maronga
39	# bugfix in parameter file check (read %cpp_options was missing)
40	#
41	# 1069 2012-11-28 16:18:43Z maronga
42	# bugfix: coupling mode was always set to mpi2, typos removed
43	#
44	# 1058 2012-11-21 07:00:35Z raasch
45	# Intel inspector (inspxe) is given the number of PEs instead of the number of
46	# nodes
47	#
48	# 1046 2012-11-09 14:38:45Z maronga
49	# code put under GPL (PALM 3.9)
50	#
51	# 21/03/94 - Siggi - first version finished
52	# 03/03/94 - Siggi - script development started
53	#
54	#--------------------------------------------------------------------------------#
55	# mrun - script for running PALM jobs
56	#--------------------------------------------------------------------------------#
57
58
59
60	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
61
62	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
63	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
64	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
65
66	AddFilenames=""
67	additional_conditions=""
68	add_source_path=""
69	afname=""
70	archive_save=true
71	archive_system=none
72	check_namelist_files=true
73	combine_plot_fields=true
74	compiler_name=""
75	cond1=""
76	cond2=""
77	config_file=.mrun.config
78	coupled_dist=""
79	coupled_mode="mpi1"
80	cpp_opts=""
81	cpp_options=""
82	cpumax=0
83	cpurest=0
84	delete_temporary_catalog=true
85	do_batch=false
86	do_compile=true
87	do_remote=false
88	do_stagein=true
89	do_stageout=true
90	do_trace=false
91	email_notification="none"
92	exclude=""
93	executable=""
94	execution_error=false
95	fimm=false
96	fname=test
97	fromhost=""
98	global_revision=""
99	group_number=none
100	host=""
101	host_file=""
102	hp=""
103	ignore_archive_error=false
104	input_list=""
105	interpreted_config_file=""
106	job_catalog="~/job_queue"
107	job_on_file=""
108	keep_data_from_previous_run=false
109	link_local_input=false
110	link_local_output=false
111	localhost_realname=$(hostname)
112	local_compile=false
113	local_dvrserver_running=.FALSE.
114	locat=normal
115	mainprog=""
116	makefile=""
117	max_par_io_str=""
118	mc=$0
119	while [[ $(echo $mc \| grep -c "/") != 0 ]]
120	do
121	mc=`echo $mc \| cut -f2- -d"/"`
122	done
123	module_calls=""
124	mrun_script_name=$mc
125	netcdf_inc=""
126	netcdf_lib=""
127	netcdf_support=false
128	node_usage=default
129	numprocs=""
130	numprocs_atmos=0
131	numprocs_ocean=0
132	OOPT=""
133	openmp=false
134	output_list=""
135	package_list=""
136	punkte="..........................................................."
137	queue=none
138	read_from_config=""
139	restart_run=false
140	if [[ `hostname` = rte10 ]]
141	then
142	return_addres=133.5.185.60
143	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
144	elif [[ `hostname` = climate0 ]]
145	then
146	return_addres=165.132.26.68
147	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
148	elif [[ `hostname` = urban00 ]]
149	then
150	return_addres=147.46.30.151
151	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
152	else
153	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
154	fi
155	return_password=""
156	return_username=$LOGNAME
157	remotecall=false
158	remote_username=""
159	run_coupled_model=false
160	run_mode=""
161	scirocco=false
162	store_on_archive_system=false
163	striche=" ----------------------------------------------------------------------------"
164	silent=false
165	source_list=""
166	source_path=SOURCE
167	tasks_per_node=""
168	threads_per_task=1
169	tmpcreate=false
170	tmp_data_catalog=""
171	transfer_problems=false
172	usern=$LOGNAME
173	use_openmp=false
174	working_directory=`pwd`
175	TOPT=""
176	XOPT=""
177	zeit=$( date \| cut -c 12-19 )
178
179	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
180	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
181
182	typeset -R30 calltime
183	typeset -L20 spalte1
184	typeset -L40 spalte2
185	typeset -L60 spalte3
186	typeset -L35 string1=`date`
187	typeset -L12 string2=$usern
188	typeset -L12 string3=$localhost_realname
189	typeset -L12 string4
190	typeset -L12 string5
191	typeset -L30 version="MRUN 2.0 Rev$Rev: 1096 $"
192
193
194
195	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
196	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
197
198	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
199	# EXPORTIERT WERDEN
200	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
201	export group_number input_list memory numprocs output_list queue run_mode
202
203
204
205	# FEHLERBEHANDLUNG
206	# BEI EXIT:
207	trap 'rm -rf $working_directory/tmp_mrun
208	if [[ $locat != localhost ]]
209	then
210	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
211	# then
212	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
213	#MRUN-calls on $localhost
214	#
215	#date and time user localhost remotehost termination mrun-command
216	#--------------------------------------------------------------------------------------------------------------------
217	#%STATEND%
218	# chmod 666 ${mrun_path}/statistik/mrun_statistik
219	# fi
220	#
221	# # EINTRAG IN DIE STATISTIK-DATEI
222	# string4=$host
223	# string5=$locat
224	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
225	# then
226	# if [[ $do_batch = true ]]
227	# then
228	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
229	# else
230	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
231	# fi
232	# fi
233	echo " " > /dev/null
234	fi
235
236	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
237	then
238
239	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
240	(( i = 0 ))
241	while (( i < iec ))
242	do
243	(( i = i + 1 ))
244	printf "\n *** Execution of ERROR-command:\n"
245	printf " >>> ${err_command[$i]}\n"
246	eval ${err_command[$i]}
247	done
248	if [[ -n $interpreted_config_file ]] then
249	rm -rf $interpreted_config_file
250	fi
251	if [[ -n .mrun_environment ]] then
252	rm -rf .mrun_environment
253	fi
254	if [[ $tmpcreate = true ]]
255	then
256	printf "\n *** Contents of \"$TEMPDIR\":\n"
257	ls -al; cd
258	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
259	fi
260	if [[ "$dvrserver_id" != "" ]]
261	then
262	echo "+++ killing dvrserver_id=$dvrserver_id"
263	kill $dvrserver_id
264	fi
265	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
266	then
267	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
268	fi
269	printf "\n\n+++ MRUN killed \n\n"
270	elif [[ $locat != control_c ]]
271	then
272	printf "\n\n --> all actions finished\n\n"
273	printf " Bye, bye $usern !!\n\n"
274	fi' exit
275
276
277	# BEI TERMINAL-BREAK:
278	trap 'rm -rf $working_directory/tmp_mrun
279	rm -rf $working_directory/tmp_check_namelist_files
280	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
281	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
282	then
283	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
284	fi
285	if [[ "$dvrserver_id" != "" ]]
286	then
287	echo "+++ killing dvrserver_id=$dvrserver_id"
288	kill $dvrserver_id
289	fi
290	printf "\n+++ MRUN killed by \"^C\" \n\n"
291	locat=control_c
292	exit
293	' 2
294
295
296	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
297	# BEEN SET
298	if [[ "$PALM_BIN" = "" ]]
299	then
300	printf "\n +++ environment variable PALM_BIN has not been set"
301	printf "\n please set it to the directory where the PALM scripts are located"
302	locat=palm_bin; exit
303	fi
304	export PATH=$PALM_BIN:$PATH
305
306
307
308	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
309	# FUER FOLGEJOBS BENOETIGT WIRD
310	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
311	do
312	case $option in
313	(a) afname=$OPTARG;;
314	(A) store_on_archive_system=true; mc="$mc -A";;
315	(b) do_batch=true; mc="$mc -b";;
316	(B) delete_temporary_catalog=false; mc="$mc -B";;
317	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
318	(C) restart_run=true; mc="$mc -C";;
319	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
320	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
321	(F) job_on_file="-D"; mc="$mc -F";;
322	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
323	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
324	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
325	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
326	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
327	(I) ignore_archive_error=true; mc="$mc -I";;
328	(k) keep_data_from_previous_run=true; mc="$mc -k";;
329	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
330	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
331	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
332	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
333	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
334	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
335	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
336	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
337	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
338	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
339	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
340	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
341	(S) read_from_config=false; mc="$mc -S";;
342	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
343	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
344	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
345	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
346	(v) silent=true; mc="$mc -v";;
347	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
348	(x) do_trace=true;set -x; mc="$mc -x";;
349	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
350	(y) ocean_file_appendix=true; mc="$mc -y";;
351	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
352	(z) check_namelist_files=false; mc="$mc -z";;
353	(Z) combine_plot_fields=false; mc="$mc -Z";;
354	(\?) printf "\n +++ unknown option $OPTARG \n"
355	printf "\n --> type \"$0 ?\" for available options \n"
356	locat=parameter;exit;;
357	esac
358	done
359
360
361	# EVTL. POSITIONSPARAMETER EINLESEN
362	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
363	shift OPTIND-1
364
365
366	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
367	if [[ "$1" = "?" ]]
368	then
369	(printf "\n *** mrun can be called as follows:\n"
370	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
371	printf "\n Description of available options:\n"
372	printf "\n Option Description Default-Value"
373	printf "\n -a base name of input files equiv. -d"
374	printf "\n -A archiving when using file-attribute fl"
375	printf "\n -b batch-job on local machine ---"
376	printf "\n -B do not delete temporary directory at end ---"
377	printf "\n -c configuration file .mrun.config"
378	printf "\n -d base name of files attached to program test"
379	printf "\n -D preprocessor(cpp)-directives \"\" "
380	printf "\n -F create remote job file only ---"
381	printf "\n -h execution host $localhost_realname"
382	printf "\n -i INPUT control list \"\" "
383	printf "\n -I archiving errors of previous batch-jobs"
384	printf "\n will be ignored"
385	printf "\n -k keep data from previous run"
386	printf "\n -K additional conditions for controling"
387	printf "\n usage of conditional code and"
388	printf "\n env-variables in configuration file \"\" "
389	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
390	printf "\n -M Makefile name Makefile"
391	printf "\n -n node usage (shared/not_shared) depending on -h"
392	printf "\n -o OUTPUT control list \"\" "
393	printf "\n -O use OpenMP ---"
394	printf "\n -p software package list \"\" "
395	printf "\n -q queue \"$queue\" "
396	printf "\n -r run control list (combines -i -o) \"\" "
397	printf "\n -s filenames of routines to be compiled \"\" "
398	printf "\n must end with .f, .f90, .F, or .c !"
399	printf "\n use \"..\" for more than one file and wildcards"
400	printf "\n -s LM compiles all locally modified files"
401	printf "\n -S config file interpreted by shellscript ---"
402	printf "\n -t allowed cpu-time in seconds (batch) 0"
403	printf "\n -T tasks per node depending on -h"
404	printf "\n -u username on remote machine \"\" "
405	printf "\n -v no prompt for confirmation ---"
406	printf "\n -w maximum parallel io streams as given by -X"
407	printf "\n -x tracing of mrun for debug purposes ---"
408	printf "\n -X # of processors (on parallel machines) 1"
409	printf "\n -y add appendix \"_O\" to all local output"
410	printf "\n files (ocean precursor runs followed by"
411	printf "\n coupled atmosphere-ocean runs) ---"
412	printf "\n -Y run coupled model, \"#1 #2\" with"
413	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
414	printf "\n -z disable a priori parameter file check ---"
415	printf "\n -Z skip combine_plot_fields at the end of "
416	printf "\n the simulation ---"
417	printf "\n "
418	printf "\n Possible values of positional parameter <modus>:"
419	printf "\n \"?\" - this outline \n\n") \| more
420	exit
421	elif [[ "$1" != "" ]]
422	then
423	printf "\n +++ positional parameter $1 unknown \n"
424	locat=parameter; exit
425	fi
426
427
428
429	# KURZE STARTMELDUNG
430	printf "\n*** $version "
431	printf "\n will be executed. Please wait ..."
432
433
434
435	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
436	if [[ ! -f $config_file ]]
437	then
438	printf "\n\n +++ configuration file: "
439	printf "\n $config_file"
440	printf "\n does not exist"
441	locat=connect; exit
442	fi
443
444
445	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
446	line=""
447	grep "%host_identifier" $config_file > tmp_mrun
448	while read line
449	do
450	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
451	then
452	HOSTNAME=`echo $line \| cut -d" " -s -f2`
453	host_identifier=`echo $line \| cut -d" " -s -f3`
454	if [[ $localhost_realname = $HOSTNAME ]]
455	then
456	localhost=$host_identifier
457	break
458	fi
459	fi
460	done < tmp_mrun
461
462	if [[ "$localhost" = "" ]]
463	then
464	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
465	printf "\n for local host \"$localhost_realname\"."
466	printf "\n Please add line"
467	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
468	printf "\n to the configuration file."
469	locat=localhost; exit
470	fi
471
472
473	# HOSTSPEZIFISCHE VARIABLEN SETZEN
474	case $localhost_realname in
475	(r1\|r2\|h01\|b01) archive_system=tivoli;;
476	(cs*) archive_system=ut;;
477	(fimm.bccs.uib.no) fimm=true;;
478	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
479	(scirocco) scirocco=true;;
480	esac
481
482
483
484	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
485	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
486	[[ "$afname" = "" ]] && afname=$fname
487
488
489	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
490	if [[ "$run_mode" != "" ]]
491	then
492	input_list="$input_list $run_mode"
493	output_list="$output_list $run_mode"
494	fi
495
496
497	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
498	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
499	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
500	# STARTET)
501	if [[ "$fromhost" = "" ]]
502	then
503	fromhost=$localhost
504	fi
505
506
507	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
508	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
509	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
510	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
511	if [[ -n $host && "$host" != $localhost ]]
512	then
513	do_batch=true
514	do_remote=true
515	case $host in
516	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
517	(*) printf "\n"
518	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
519	printf "\n is not available"
520	locat=nqs; (( iec = 0 )); exit;;
521	esac
522	else
523	host=$localhost
524	fi
525
526
527	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
528	if [[ -n $additional_conditions ]]
529	then
530	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
531	cond1=`echo $additional_conditions \| cut -d" " -f1`
532	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
533	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
534	if [[ -n $dummy ]]
535	then
536	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
537	locat=options; exit
538	fi
539	block=_$cond1
540	[[ -n $cond2 ]] && block=${block}_$cond2
541	fi
542
543
544	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
545	if [[ $run_coupled_model = true ]]
546	then
547
548	if [[ -n $coupled_dist ]]
549	then
550
551	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
552	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
553
554	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
555	then
556
557	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
558	printf "\n PEs (total) : $numprocs"
559	printf "\n PEs (atmosphere): $numprocs_atmos"
560	printf "\n PEs (ocean) : $numprocs_ocean"
561	locat=coupling; exit
562
563	fi
564
565	else
566
567	(( numprocs_ocean = $numprocs / 2 ))
568	(( numprocs_atmos = $numprocs / 2 ))
569
570	fi
571	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
572
573	# GET coupled_mode FROM THE CONFIG FILE
574	line=""
575	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
576	while read line
577	do
578	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
579	then
580	coupled_mode="mpi2"
581	fi
582	done < tmp_mrun
583
584	fi
585
586
587	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
588	# ARCHIVIERUNG FEHLGESCHLAGEN IST
589	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
590	then
591	if [[ $ignore_archive_error = false ]]
592	then
593	printf "\n +++ data archiving of previous run failed"
594	printf "\n see directory \~/job_queue on remote machine"
595	locat=archive; exit
596	else
597	printf "\n +++ warning: data archiving in a previous run failed"
598	printf "\n MRUN continues, trying to get backup copy"
599	fi
600	fi
601
602
603
604	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
605	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
606	if [[ "$read_from_config" = false ]]
607	then
608
609	[[ $silent = false ]] && printf "\n Reading the configuration file... "
610	while read zeile
611	do
612	[[ $silent = false ]] && printf "."
613
614
615	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
616	# ERSETZEN
617	eval zeile=\"$zeile\"
618
619
620	# INTERPRETATION DER ZEILE
621	if [[ "$(echo $zeile)" = "" ]]
622	then
623	# LEERZEILE, KEINE AKTION
624	continue
625
626	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
627	then
628
629	# ZEILE IST KOMMENTARZEILE
630	true
631
632	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
633	then
634
635	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
636	zeile=$(echo $zeile \| cut -c2-)
637	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
638	var=`echo $zeile \| cut -d" " -f1`
639	value=`echo $zeile \| cut -d" " -s -f2`
640	for_host=`echo $zeile \| cut -d" " -s -f3`
641	for_cond1=`echo $zeile \| cut -d" " -s -f4`
642	for_cond2=`echo $zeile \| cut -d" " -s -f5`
643
644	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
645	then
646
647	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
648	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
649	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
650
651
652	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
653	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
654	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
655	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
656	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
657	# KONFIGURATIONSDATEI
658	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
659	then
660	eval $var=\$value
661
662	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
663	if [[ $do_trace = true ]]
664	then
665	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
666	fi
667	fi
668
669	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
670	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
671	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
672	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
673	if [[ $var = host ]]
674	then
675	if [[ -n $host && "$host" != $localhost ]]
676	then
677	do_batch=true
678	do_remote=true
679	case $host in
680	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
681	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
682	printf "\n is not available"
683	locat=nqs; exit;;
684	esac
685	else
686	host=$localhost
687	fi
688	fi
689
690	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
691	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
692	# DEN PROGRAMMEN BENOETIGT WERDEN
693	export $var
694	fi
695
696
697
698
699	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
700	then
701
702	# ZEILE DEFINIERT ERROR-KOMMANDO
703	(( iec = iec + 1 ))
704	zeile=$(echo $zeile \| cut -c4-)
705	err_command[$iec]="$zeile"
706
707	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
708	then
709
710	# ZEILE DEFINIERT INPUT-KOMMANDO
711	(( iic = iic + 1 ))
712	zeile=$(echo $zeile \| cut -c4-)
713	in_command[$iic]="$zeile"
714
715	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
716	then
717
718	# ZEILE DEFINIERT OUTPUT-KOMMANDO
719	(( ioc = ioc + 1 ))
720	zeile=$(echo $zeile \| cut -c4-)
721	out_command[$ioc]="$zeile"
722
723	else
724
725	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
726	# s2a: in/out - Feld
727	# s2b: loc - Feld (optional)
728	# s2c: tr/ar - Feld (optional)
729	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
730	s1=`echo $zeile \| cut -d" " -f1`
731	s2=`echo $zeile \| cut -d" " -s -f2`
732	s2a=$(echo $s2 \| cut -d":" -f1)
733	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
734	then
735	s2b=""
736	s2c=""
737	else
738	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
739	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
740	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
741	fi
742	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
743	s3=`echo $zeile \| cut -d" " -f3`
744	s4=`echo $zeile \| cut -d" " -s -f4`
745	s5=`echo $zeile \| cut -d" " -s -f5`
746	s6=`echo $zeile \| cut -d" " -s -f6`
747
748
749	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
750	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
751	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
752	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
753	# HANDEN SEIN MUSS (D.H. s2b = loc)
754	IFSALT="$IFS"; IFS="$IFS:"
755	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
756	then
757	found=false
758	for actual in $input_list
759	do
760	for formal in $s3
761	do
762	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
763	done
764	done
765	if [[ $found = true ]]
766	then
767	(( iin = iin + 1 ))
768	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
769	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
770	extin[$iin]=$s6
771	fi
772	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
773	then
774	found=false
775	for actual in $output_list
776	do
777	for formal in $s3
778	do
779	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
780	done
781	done
782	if [[ $found = true ]]
783	then
784	(( iout = iout + 1 ))
785	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
786	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
787	fi
788	elif [[ "$s2a" != in && "$s2a" != out ]]
789	then
790	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
791	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
792	locat=connect; exit
793	fi
794	IFS="$IFSALT"
795	fi
796	done < $config_file
797
798	else
799
800
801	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
802	[[ $silent = false ]] && printf "..."
803	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
804	export interpreted_config_file=.icf.$RANDOM
805
806
807
808	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
809	# VERFUEGUNG STELLEN
810	cat > .mrun_environment << %%END%%
811	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
812	config_file = '$config_file', do_remote = '$do_remote',
813	do_trace = '$do_trace', host = '$host',
814	input_list = '$input_list', icf = '$interpreted_config_file',
815	localhost = '$localhost', output_list = '$output_list' /
816
817	%%END%%
818
819	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
820	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
821	mrun_memory=$memory
822	mrun_group_number=$group_number
823	mrun_cpumax=$cpumax
824	mrun_numprocs=$numprocs
825
826	if [[ $localhost_realname = "sx-fep" ]]
827	then
828	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
829	else
830
831	if [[ "$host" != $localhost ]]
832	then
833
834	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
835	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
836	if [[ $? != 0 ]]
837	then
838	printf "\n\n +++ no interpret_config found"
839	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
840	locat=interpret_config; exit
841	fi
842	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
843	$interpret_config_executable
844
845	else
846
847	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
848	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
849	then
850	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
851	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
852	locat=interpret_config; exit
853	else
854	interpret_config${block}.x
855	fi
856
857	fi
858	fi
859	rm .mrun_environment
860
861
862	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
863	chmod u+x $interpreted_config_file
864	export PATH=$PATH:.
865	. $interpreted_config_file
866	rm $interpreted_config_file
867
868
869	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
870	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
871	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
872	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
873	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
874	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
875	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
876
877	fi
878
879
880	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
881	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
882	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
883	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
884	if [[ "$SOURCES_COMPLETE" = "" ]]
885	then
886
887	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
888	# VEREINBART WURDE
889	source_path=""
890	line=""
891	grep "%source_path" $config_file > tmp_mrun
892	while read line
893	do
894	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
895	then
896	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
897	then
898	global_source_path=`echo $line \| cut -d" " -f2`
899	fi
900	fi
901	done < tmp_mrun
902
903	line=""
904	found=false
905	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
906	while read line
907	do
908	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
909	then
910	if [[ $found = true ]]
911	then
912	printf "\n\n +++ more than one source path found in configuration file"
913	printf "\n for local host \"$localhost\" "
914	locat=source_path; exit
915	fi
916	source_path=`echo $line \| cut -d" " -f2`
917	found=true
918	fi
919	done < tmp_mrun
920	rm tmp_mrun
921
922	if [[ "$source_path" = "" ]]
923	then
924	if [[ "$global_source_path" != "" ]]
925	then
926	source_path=$global_source_path
927	else
928	printf "\n\n +++ no source path found in configuration file"
929	printf "\n for local host \"$localhost\" "
930	locat=source_path; exit
931	fi
932	fi
933	eval source_path=$source_path
934
935	if [[ ! -d $source_path ]]
936	then
937	printf "\n\n +++ source path \"$source_path\" on local host"
938	printf "\n \"$localhost\" does not exist"
939	locat=source_path; exit
940	fi
941
942	fi
943
944
945	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
946	# DURCH OPTION -G MITGETEILT)
947	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
948	then
949	global_revision=`svnversion $source_path 2>/dev/null`
950	global_revision="Rev: $global_revision"
951	fi
952
953
954	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
955	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
956	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
957	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
958	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
959	if [[ -n $host && "$host" != $localhost ]]
960	then
961	do_batch=true
962	do_remote=true
963	case $host in
964	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
965	(*) printf "\n"
966	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
967	printf "\n is not available"
968	locat=nqs; (( iec = 0 )); exit;;
969	esac
970	else
971	host=$localhost
972	fi
973
974
975	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
976	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
977	then
978
979	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
980	if [[ ! -n $numprocs ]]
981	then
982	printf "\n"
983	printf "\n +++ option \"-K parallel\" requires additional specification"
984	printf "\n of the number of processors to be used by"
985	printf "\n mrun-option \"-X\" or by environment-variable"
986	printf "\n \"numprocs\" in the configuration file"
987	locat=numprocs; (( iec = 0 )); exit
988	fi
989
990	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
991	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
992	# GESAMTPROZESSORANZAHL IST
993	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
994	then
995	printf "\n"
996	printf "\n +++ option \"-T\" (tasks per node) is missing"
997	printf "\n set -T option or define tasks_per_node in the config file"
998	locat=tasks_per_node; (( iec = 0 )); exit
999	fi
1000	if [[ $host != lcflow && $host != lcxt5m ]]
1001	then
1002	(( ival = $tasks_per_node ))
1003	(( pes = numprocs ))
1004	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1005	# then
1006	# (( pes = pes - 1 ))
1007	# fi
1008	(( ii = pes / ival ))
1009	if (( pes - ii * ival > 0 ))
1010	then
1011	printf "\n"
1012	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1013	printf "\n divisor of the total number of processors (option \"-X\")"
1014	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1015	locat=tasks_per_node; (( iec = 0 )); exit
1016	fi
1017	fi
1018
1019
1020	# IBMY HAT NUR EINEN KNOTEN
1021	if [[ $host = ibmy ]]
1022	then
1023	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1024	then
1025	printf "\n"
1026	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1027	printf "\n total number of processors (option \"-X\")"
1028	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1029	locat=tasks_per_node; (( iec = 0 )); exit
1030	fi
1031	fi
1032
1033
1034	# SETTINGS FOR SUBJOB-COMMAND
1035	TOPT="-T $tasks_per_node"
1036	OOPT="-O $threads_per_task"
1037
1038	# GESAMTZAHL DER KNOTEN BESTIMMEN
1039	if [[ "$tasks_per_node" != "" ]]
1040	then
1041	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1042	fi
1043
1044	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1045	# SETZEN
1046	if [[ $node_usage = default ]]
1047	then
1048	if [[ $host = ibms ]]
1049	then
1050	node_usage=shared
1051	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1052	then
1053	node_usage=singlejob
1054	else
1055	node_usage=not_shared
1056	fi
1057	fi
1058
1059	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1060	then
1061	printf "\n"
1062	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1063	printf "\n \"shared\" or \"not_shared\""
1064	locat=tasks_per_node; (( iec = 0 )); exit
1065	fi
1066
1067	fi
1068
1069	# PRUEFEN, OB HOSTFILE EXISTIERT
1070	if [[ -n $hostfile ]]
1071	then
1072	if [[ ! -f $hostfile ]]
1073	then
1074	printf "\n"
1075	printf "\n +++ hostfile \"$hostfile\" does not exist"
1076	locat=hostfile; exit
1077	fi
1078	fi
1079
1080	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1081	if [[ $host = ibmy && $do_remote = false ]]
1082	then
1083	if [[ ! -f $HOME/.rhosts ]]
1084	then
1085	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1086	printf "\n\n *** file:"
1087	printf "\n $HOME/.rhosts"
1088	printf "\n was created\n"
1089	fi
1090	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1091	then
1092	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1093	printf "\n\n *** file:"
1094	printf "\n $HOME/.rhosts"
1095	printf "\n was extended by the name of the current host\n"
1096	fi
1097	fi
1098
1099
1100	# Set default value for the maximum number of parallel io streams
1101	if [[ "$maximum_parallel_io_streams" = "" ]]
1102	then
1103	maximum_parallel_io_streams=$numprocs
1104	fi
1105
1106
1107	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1108	if [[ "$scp_port" != "" ]]
1109	then
1110	PORTOPT="-P $scp_port"
1111	SSH_PORTOPT="-p $scp_port"
1112	fi
1113
1114
1115	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1116	if [[ $queue = none ]]
1117	then
1118	case $host in
1119	(ibmh) queue=no_class;;
1120	(ibmkisti) queue=class.32plus;;
1121	(ibmy) queue=parallel;;
1122	(lckiaps) queue=normal;;
1123	(lckyoto) queue=ph;;
1124	(lckyut) queue=cx-dbg;;
1125	(lcsgib) queue=testq;;
1126	(lcsgih) queue=testq;;
1127	(lctit) queue=S;;
1128	(nech) queue=none;;
1129	(necriam) queue=SP;;
1130	(unics) queue=unics;;
1131	esac
1132	fi
1133
1134
1135	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1136	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1137	# ERMITTELN
1138	(( i = 0 ))
1139	while (( i < iin ))
1140	do
1141	(( i = i + 1 ))
1142	(( maxcycle = 0 ))
1143
1144	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1145	if [[ "${actionin[$i]}" = di ]]
1146	then
1147	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1148	# REM-MASCHINE AUSWERTEN
1149	eval filename=${pathin[$i]}/${endin[$i]}
1150	else
1151	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1152	# REM-MASCHINE AUSWERTEN
1153	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1154	fi
1155	eval pathname=${pathin[$i]}
1156
1157	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1158	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1159	then
1160	filename_input=$filename
1161	fi
1162
1163	# PRUEFEN AUF VORHANDENSEIN
1164	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1165	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1166	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1167	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1168	then
1169	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1170	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1171	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1172	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1173	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1174	if [[ "${transin[$i]}" != "locopt" ]]
1175	then
1176	printf "\n\n +++ INPUT-file: "
1177	if [[ "${extin[$i]}" = "" ]]
1178	then
1179	printf "\n $filename"
1180	else
1181	printf "\n $filename.${extin[$i]}"
1182	fi
1183	printf "\n does not exist\n"
1184	locat=input; exit
1185	else
1186	transin[$i]="unavailable"
1187	fi
1188	else
1189
1190	# ZYKLUSNUMMER FESTSTELLEN
1191	ls -1 -d $filename > filelist 2>/dev/null
1192	ls -1 -d $filename.* >> filelist 2>/dev/null
1193	while read zeile
1194	do
1195	cycle=$(print $zeile \| cut -f2 -d".")
1196	if [[ "$cycle" = "$zeile" ]]
1197	then
1198	(( icycle = 0 ))
1199	elif [[ "$cycle" = "${extin[$i]}" ]]
1200	then
1201	(( icycle = 0 ))
1202	else
1203	(( icycle = $cycle ))
1204	fi
1205	if (( icycle > maxcycle ))
1206	then
1207	(( maxcycle = icycle ))
1208	file_to_be_used=$zeile
1209	fi
1210	done <filelist
1211	rm filelist
1212
1213	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1214	if (( maxcycle > 0 ))
1215	then
1216	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1217	then
1218	filename=${filename}.$maxcycle.${extin[$i]}
1219	else
1220	filename=${filename}.$maxcycle
1221	fi
1222	else
1223	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1224	then
1225	filename=${filename}.${extin[$i]}
1226	fi
1227	fi
1228
1229	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1230	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1231	absnamein[$i]=$filename
1232	if (( maxcycle > 0 ))
1233	then
1234	if [[ "${actionin[$i]}" = di ]]
1235	then
1236	frelin[$i]=${endin[$i]}.$maxcycle
1237	else
1238	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1239	fi
1240	else
1241	if [[ "${actionin[$i]}" = di ]]
1242	then
1243	frelin[$i]=${endin[$i]}
1244	else
1245	frelin[$i]=${afname}${endin[$i]}
1246	fi
1247	fi
1248
1249	fi
1250	done
1251
1252	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1253	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1254	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1255	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1256	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1257	(( i = 0 ))
1258	while (( i < iout ))
1259	do
1260	(( i = i + 1 ))
1261	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1262	then
1263	if [[ "${actionout[$i]}" = tr ]]
1264	then
1265	actionout[$i]=""
1266	elif [[ "${actionout[$i]}" = trpe ]]
1267	then
1268	actionout[$i]=pe
1269	elif [[ "${actionout[$i]}" = tra ]]
1270	then
1271	actionout[$i]=a
1272	fi
1273	(( maxcycle = 0 ))
1274	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1275	eval catalogname=${pathout[$i]}
1276	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1277	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1278	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1279	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1280	then
1281
1282	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1283	if cat /dev/null > $filename
1284	then
1285	rm $filename
1286	else
1287
1288	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1289	if [[ ! -d $catalogname ]]
1290	then
1291	if mkdir -p $catalogname
1292	then
1293	printf "\n\n *** directory:"
1294	printf "\n $catalogname"
1295	printf "\n was created\n"
1296	else
1297	printf "\n\n +++ OUTPUT-file:"
1298	printf "\n $filename"
1299	printf "\n cannot be created, because directory does not exist"
1300	printf "\n and cannot be created either"
1301	printf "\n"
1302	locat=output ; exit
1303	fi 2>/dev/null
1304	else
1305	printf "\n\n +++ OUTPUT-file:"
1306	printf "\n $filename"
1307	printf "\n cannot be created, although directory exists"
1308	printf "\n"
1309	locat=output ; exit
1310	fi
1311	fi 2>/dev/null
1312	else
1313
1314	# ZYKLUSNUMMER FESTSTELLEN
1315	ls -1 -d $filename > filelist 2>/dev/null
1316	ls -1 -d $filename.* >> filelist 2>/dev/null
1317	while read zeile
1318	do
1319	cycle=$(print $zeile \| cut -f2 -d".")
1320	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1321	then
1322	(( icycle = 1 ))
1323	else
1324	(( icycle = $cycle + 1 ))
1325	fi
1326	if (( icycle > maxcycle ))
1327	then
1328	(( maxcycle = icycle ))
1329	fi
1330	done <filelist
1331	rm filelist
1332	fi
1333
1334	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1335	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1336	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1337	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1338	if [[ "${actionout[$i]}" != a ]]
1339	then
1340	if (( maxcycle > 0 ))
1341	then
1342	filename=${filename}.$maxcycle
1343	if cat /dev/null > $filename
1344	then
1345	rm $filename
1346	else
1347	printf "\n +++ OUTPUT-file:"
1348	printf "\n $filename"
1349	printf "\n cannot be created"
1350	locat=output ; exit
1351	fi
1352	fi
1353	else
1354	(( maxcycle = maxcycle - 1 ))
1355	if (( maxcycle > 0 ))
1356	then
1357	filename=${filename}.$maxcycle
1358	fi
1359	fi
1360
1361	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1362	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1363	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1364	pathout[$i]=$filename
1365	if (( maxcycle > 0 ))
1366	then
1367	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1368	else
1369	frelout[$i]=${fname}${endout[$i]}
1370	fi
1371
1372	fi
1373	done
1374
1375
1376	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1377	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1378	then
1379	if [[ "$dvr_inc" = "" ]]
1380	then
1381	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1382	printf "\n This is required for the dvrp_graphics package.\n"
1383	locat=dvr; exit
1384	fi
1385	if [[ "$dvr_lib" = "" ]]
1386	then
1387	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1388	printf "\n This is required for the dvrp_graphics package.\n"
1389	locat=dvr; exit
1390	fi
1391	fi
1392
1393
1394	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1395	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1396	# UEBERSETZT ZU WERDEN)
1397	if [[ "$mainprog" = "" && "$executable" = "" ]]
1398	then
1399	printf "\n +++ neither main program nor executable defined"
1400	locat=source; exit
1401	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1402	then
1403	printf "\n +++ main program as well as executable defined"
1404	locat=source; exit
1405	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1406	then
1407	do_compile=false
1408	fi
1409
1410
1411	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1412	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1413	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1414	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1415	then
1416	rm -rf SOURCES_FOR_RUN_$fname
1417	mkdir SOURCES_FOR_RUN_$fname
1418	fi
1419
1420
1421	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1422	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1423	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1424	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1425	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1426	then
1427
1428	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1429
1430	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1431	then
1432
1433	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1434	source_list=""
1435	cd $source_path
1436
1437
1438	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1439	if [[ ! -d .svn ]]
1440	then
1441	printf "\n\n +++ source directory"
1442	printf "\n \"$source_path\" "
1443	printf "\n is not under control of \"subversion\"."
1444	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1445	fi
1446
1447
1448	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1449	Filenames=""
1450	svn status > tmp_mrun
1451	while read line
1452	do
1453	firstc=`echo $line \| cut -c1`
1454	if [[ $firstc = M \|\| $firstc = "?" ]]
1455	then
1456	Name=`echo "$line" \| cut -c8-`
1457	extension=`echo $Name \| cut -d. -f2`
1458	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1459	then
1460	Filenames="$Filenames "$Name
1461	fi
1462	fi
1463	done < tmp_mrun
1464
1465
1466	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1467	for dateiname in $Filenames
1468	do
1469	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1470	source_list=$source_list"$dateiname "
1471	done
1472
1473	cd - > /dev/null
1474
1475
1476	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1477	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1478	# VORHANDEN
1479	elif [[ "$source_list" != "" && $restart_run != true ]]
1480	then
1481
1482	cd $source_path
1483
1484	for filename in $source_list
1485	do
1486
1487	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1488	if [[ $(print $filename \| grep -c "/") != 0 ]]
1489	then
1490	printf "\n +++ source code file: $filename"
1491	printf "\n must not contain (\"/\") "
1492	locat=source; exit
1493	fi
1494
1495	if [[ ! -f $filename ]]
1496	then
1497	printf "\n +++ source code file: $filename"
1498	printf "\n does not exist"
1499	locat=source; exit
1500	else
1501	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1502	fi
1503
1504	done
1505
1506	cd - > /dev/null
1507
1508	fi
1509
1510
1511	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1512	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1513	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1514	if [[ $restart_run != true ]]
1515	then
1516
1517	if [[ ! -f "$source_path/$mainprog" ]]
1518	then
1519	printf "\n\n +++ main program: $mainprog"
1520	printf "\n does not exist in source directory"
1521	printf "\n \"$source_path\"\n"
1522	locat=source; exit
1523	else
1524	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1525	then
1526	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1527	source_list=${mainprog}" $source_list"
1528	fi
1529	fi
1530	fi
1531
1532
1533	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1534	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1535	if [[ "$restart_run" != true ]]
1536	then
1537	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1538	if [[ ! -f $makefile ]]
1539	then
1540	printf "\n +++ file \"$makefile\" does not exist"
1541	locat=make; exit
1542	else
1543	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1544	fi
1545	fi
1546
1547
1548	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1549	if [[ $restart_run != true && "$add_source_path" != "" ]]
1550	then
1551
1552	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1553	if [[ ! -d $add_source_path ]]
1554	then
1555	printf "\n\n +++ WARNING: additional source code directory"
1556	printf "\n \"$add_source_path\" "
1557	printf "\n does not exist or is not a directory."
1558	printf "\n No source code will be used from this directory!\n"
1559	add_source_path=""
1560	if [[ $silent == false ]]
1561	then
1562	sleep 3
1563	fi
1564	else
1565
1566	cd $add_source_path
1567	found=false
1568
1569	Names=$(ls -1 *.f90 2>&1)
1570	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1571	Names=$(ls -1 *.F90 2>&1)
1572	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1573	Names=$(ls -1 *.F 2>&1)
1574	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1575	Names=$(ls -1 *.f 2>&1)
1576	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1577	Names=$(ls -1 *.c 2>&1)
1578	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1579
1580	cd - > /dev/null
1581	cd SOURCES_FOR_RUN_$fname
1582
1583	# COPY MAKEFILE IF EXISTING
1584	if [[ -f $add_source_path/Makefile ]]
1585	then
1586	printf "\n\n *** user Makefile from directory"
1587	printf "\n \"$add_source_path\" is used \n"
1588	if [[ $silent == false ]]
1589	then
1590	sleep 1
1591	fi
1592	cp $add_source_path/Makefile .
1593	fi
1594
1595	for dateiname in $AddFilenames
1596	do
1597	if [[ -f $dateiname ]]
1598	then
1599	printf "\n +++ source code file \"$dateiname\" found in additional"
1600	printf "\n source code directory \"$add_source_path\" "
1601	printf "\n but was also given with option \"-s\" which means that it should be taken"
1602	printf "\n from directory \"$source_path\"."
1603	locat=source; exit
1604	fi
1605
1606	cp $add_source_path/$dateiname .
1607	source_list="$source_list $dateiname"
1608
1609	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1610	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1611	then
1612	printf "\n\n +++ user file \"$dateiname\" "
1613	printf "\n is not listed in Makefile \n"
1614	locat=source; exit
1615	else
1616
1617	# Default User-Interface von der Liste entfernen, falls Datei
1618	# ein User-Interface enthaelt
1619	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1620	# then
1621	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1622	# then
1623	# rm -rf user_interface.f90
1624	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1625	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1626	# printf "\n since a user-interface is found in file"
1627	# printf "\n \"$add_source_path/$dateiname\" \n"
1628	# sleep 3
1629	# else
1630	if [[ $found = false ]]
1631	then
1632	found=true
1633	printf "\n\n *** following user file(s) added to the"
1634	printf " files to be translated:\n "
1635	fi
1636	printf "$dateiname "
1637	if [[ $silent == false ]]
1638	then
1639	sleep 0.5
1640	fi
1641
1642	fi
1643	done
1644	[[ $found = true ]] && printf "\n"
1645	cd - > /dev/null
1646	fi
1647	fi
1648
1649
1650	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1651	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1652	if [[ $restart_run != true && -n $package_list ]]
1653	then
1654
1655	cd $source_path
1656
1657	for package in $package_list
1658	do
1659
1660	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1661
1662	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1663	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1664	# LIEFERT
1665	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1666
1667
1668	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1669	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1670	for source_list_name in $package_source_list
1671	do
1672	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1673	then
1674
1675	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1676	ending=`echo $source_list_name \| cut -f2 -d.`
1677	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1678	then
1679	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1680	source_list="$source_list $source_list_name"
1681	fi
1682	fi
1683	done
1684	done
1685
1686	cd - > /dev/null
1687	fi
1688
1689
1690	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1691	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1692	# if [[ "$restart_run" != true ]]
1693	# then
1694	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1695	# if [[ ! -f $makefile ]]
1696	# then
1697	# printf "\n +++ file \"$makefile\" does not exist"
1698	# locat=make; exit
1699	# else
1700	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1701	# fi
1702	# fi
1703
1704	fi # do_compile=true
1705
1706
1707	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1708	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1709	if [[ $do_compile = true ]]
1710	then
1711
1712	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1713	# ZUSAMMENSETZEN
1714	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1715	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1716	then
1717	cpp_options="${cpp_options},-D__ibm=__ibm"
1718	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1719	then
1720	cpp_options="$cpp_options -D__nec"
1721	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1722	then
1723	cpp_options="$cpp_options -D__lc"
1724	else
1725	cpp_options="$cpp_options -D__$localhost"
1726	fi
1727
1728	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1729	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1730	then
1731	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1732	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1733	else
1734	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1735	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1736	fi
1737
1738	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1739	if [[ -n $package_list ]]
1740	then
1741	for package in $package_list
1742	do
1743	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1744	then
1745	if [[ $package != "dvrp_graphics+1PE" ]]
1746	then
1747	cpp_options="${cpp_options},-D__$package=__$package"
1748	else
1749	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1750	export use_seperate_pe_for_dvrp_output=true
1751	fi
1752	else
1753	if [[ $package != "dvrp_graphics+1PE" ]]
1754	then
1755	cpp_options="$cpp_options -D__$package"
1756	else
1757	cpp_options="$cpp_options -D__dvrp_graphics"
1758	export use_seperate_pe_for_dvrp_output=true
1759	fi
1760	fi
1761	done
1762	fi
1763
1764	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1765	if [[ -n $cpp_opts ]]
1766	then
1767	for popts in $cpp_opts
1768	do
1769	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1770	then
1771	cpp_options="${cpp_options},-D__$popts=__$popts"
1772	else
1773	cpp_options="$cpp_options -D__$popts"
1774	fi
1775	done
1776	fi
1777
1778	else
1779
1780
1781	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1782	if [[ $do_remote = false ]]
1783	then
1784	if [[ ! -f $executable ]]
1785	then
1786	printf "\n +++ executable file: $executable"
1787	printf "\n does not exist"
1788	locat=executable; exit
1789	fi
1790	fi
1791	fi
1792
1793
1794	# JOBMODUS FESTSTELLEN
1795	if [[ "$ENVIRONMENT" = BATCH ]]
1796	then
1797	jobmo=BATCH
1798	else
1799	jobmo=INTERACTIVE
1800	fi
1801
1802
1803	# no interactive runs on lctit
1804	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1805	then
1806	printf "\n +++ no interactive runs allowed on host \"$host\" "
1807	printf "\n please submit batch job using mrun option \"-b\" \n"
1808	locat=normal; exit
1809	fi
1810
1811
1812	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1813	# DURCH BENUTZER ANDERWEITIG VEREINBART
1814	if [[ "$compiler_name" = "" ]]
1815	then
1816
1817	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1818	locat=compiler_name; exit
1819
1820	fi
1821
1822
1823	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1824	[[ $localhost = necriam ]] && compiler_name=mpif90
1825
1826
1827
1828	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1829	kennung=$RANDOM
1830	if [[ "$tmp_user_catalog" = "" ]]
1831	then
1832	if [[ $localhost = ibmh ]]
1833	then
1834	tmp_user_catalog=$SCRATCH
1835	elif [[ $localhost = nech ]]
1836	then
1837	tmp_user_catalog=$WRKSHR
1838	else
1839	tmp_user_catalog=/tmp
1840	fi
1841	fi
1842	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1843
1844
1845	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1846	# BESTIMMEN
1847	if [[ "$tmp_data_catalog" = "" ]]
1848	then
1849	if [[ $localhost = nech ]]
1850	then
1851	tmp_data_catalog=$WRKSHR/mrun_restart_data
1852	else
1853	tmp_data_catalog=/tmp/mrun_restart_data
1854	fi
1855	fi
1856
1857
1858	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1859	# ERSETZEN
1860	if [[ $do_remote = false && $do_compile = true ]]
1861	then
1862	eval fopts=\"$fopts\"
1863	eval lopts=\"$lopts\"
1864	fi
1865
1866
1867
1868	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1869	fopts="$fopts $netcdf_inc $dvr_inc"
1870	lopts="$lopts $netcdf_lib $dvr_lib"
1871	ROPTS="$ropts"
1872	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1873	# then
1874	XOPT="-X $numprocs"
1875	# fi
1876
1877
1878
1879	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1880	# GRAMM BENOETIGT
1881	done=false
1882	while [[ $done = false ]]
1883	do
1884	cputime=$cpumax
1885	if (( $cputime == 0 ))
1886	then
1887	if [[ $do_batch = true ]]
1888	then
1889	printf "\n +++ cpu-time is undefined"
1890	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1891	printf "\n >>> "
1892	read cputime 1>/dev/null 2>&1
1893	else
1894	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1895	fi
1896	else
1897	done=true
1898	fi
1899	cpumax=$cputime
1900	done
1901
1902	(( minuten = cputime / 60 ))
1903	(( sekunden = cputime - minuten * 60 ))
1904
1905
1906	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1907	if [[ $do_batch = true ]]
1908	then
1909	done=false
1910	while [[ $done = false ]]
1911	do
1912	if (( memory == 0 ))
1913	then
1914	printf "\n +++ memory demand is undefined"
1915	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1916	printf "\n >>> "
1917	read memory 1>/dev/null 2>&1
1918	else
1919	done=true
1920	fi
1921	done
1922	fi
1923
1924
1925	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1926	if [[ $do_remote = true && -z $remote_username ]]
1927	then
1928	while [[ -z $remote_username ]]
1929	do
1930	printf "\n +++ username on remote host \"$host\" is undefined"
1931	printf "\n >>> Please type username:"
1932	printf "\n >>> "
1933	read remote_username
1934	done
1935	mc="$mc -u$remote_username"
1936	fi
1937
1938	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1939	if [[ "$login_init_cmd" != "" ]]
1940	then
1941	export init_cmds="${login_init_cmd};"
1942	fi
1943
1944
1945	# set module load command and export for subjob
1946	if [[ "$modules" != "" ]]
1947	then
1948	if [[ $host = lctit ]]
1949	then
1950	export module_calls=". $modules"
1951	else
1952	export module_calls="module load ${modules};"
1953	fi
1954	fi
1955
1956	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1957	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1958	then
1959	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1960	then
1961	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1962	fi
1963	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1964	# then
1965	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1966	# echo "*** module_calls = $module_calls"
1967	# fi
1968	fi
1969
1970
1971	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1972	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1973	then
1974	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1975	then
1976	mpilib=mpt
1977	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1978	then
1979	mpilib=mvapich
1980	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1981	then
1982	mpilib=impi
1983	fi
1984	fi
1985
1986
1987
1988	###########################################################################
1989	# HEADER-AUSGABE
1990	###########################################################################
1991
1992
1993	calltime=$(date)
1994	printf "\n"
1995	# [[ $silent = false ]] && clear
1996	printf "#--------------------------------------------------------------# \n"
1997	printf "\| $version$calltime \| \n"
1998	printf "\| \| \n"
1999	spalte1="called on:"; spalte2=$localhost_realname
2000	printf "\| $spalte1$spalte2 \| \n"
2001	if [[ $local_compile = false ]]
2002	then
2003	if [[ $do_remote = true ]]
2004	then
2005	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2006	else
2007	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2008	fi
2009	else
2010	spalte1="compiling test only!"; spalte2=""
2011	fi
2012	printf "\| $spalte1$spalte2 \| \n"
2013	if [[ -n $numprocs ]]
2014	then
2015	spalte1="number of PEs:"; spalte2=$numprocs
2016	printf "\| $spalte1$spalte2 \| \n"
2017	fi
2018	if [[ -n $tasks_per_node ]]
2019	then
2020	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2021	printf "\| $spalte1$spalte2 \| \n"
2022	fi
2023	if [[ $maximum_parallel_io_streams != $numprocs ]]
2024	then
2025	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2026	printf "\| $spalte1$spalte2 \| \n"
2027	fi
2028	if [[ $use_openmp = true ]]
2029	then
2030	spalte1="threads per task:"; spalte2="$threads_per_task"
2031	printf "\| $spalte1$spalte2 \| \n"
2032	fi
2033	printf "\| \| \n"
2034	if [[ $do_compile = true ]]
2035	then
2036	if [[ "$mopts" != "" ]]
2037	then
2038	spalte1="make options:"; spalte2=$mopts
2039	printf "\| $spalte1$spalte2 \| \n"
2040	zeile=$(echo "$mopts" \| cut -c41-)
2041	while [[ "$zeile" != "" ]]
2042	do
2043	spalte1=""
2044	spalte2=$zeile
2045	printf "\| $spalte1$spalte2 \| \n"
2046	zeile=$(echo "$zeile" \| cut -c41-)
2047	done
2048	fi
2049
2050	spalte1="cpp directives:"; spalte2=$cpp_options
2051	printf "\| $spalte1$spalte2 \| \n"
2052	zeile=$(echo "$cpp_options" \| cut -c41-)
2053	while [[ "$zeile" != "" ]]
2054	do
2055	spalte1=""
2056	spalte2=$zeile
2057	printf "\| $spalte1$spalte2 \| \n"
2058	zeile=$(echo "$zeile" \| cut -c41-)
2059	done
2060
2061	spalte1="compiler options:"; spalte2="$fopts"
2062	printf "\| $spalte1$spalte2 \| \n"
2063	zeile=$(echo "$fopts" \| cut -c41-)
2064	while [[ "$zeile" != "" ]]
2065	do
2066	spalte1=""
2067	spalte2=$zeile
2068	printf "\| $spalte1$spalte2 \| \n"
2069	zeile=$(echo "$zeile" \| cut -c41-)
2070	done
2071
2072	spalte1="linker options:"; spalte2=$lopts
2073	printf "\| $spalte1$spalte2 \| \n"
2074	zeile=$(echo "$lopts" \| cut -c41-)
2075	while [[ "$zeile" != "" ]]
2076	do
2077	spalte1=""
2078	spalte2=$zeile
2079	printf "\| $spalte1$spalte2 \| \n"
2080	zeile=$(echo "$zeile" \| cut -c41-)
2081	done
2082
2083	spalte1="modules to be load:"; spalte2=$modules
2084	printf "\| $spalte1$spalte2 \| \n"
2085	zeile=$(echo "$modules" \| cut -c41-)
2086	while [[ "$zeile" != "" ]]
2087	do
2088	spalte1=""
2089	spalte2=$zeile
2090	printf "\| $spalte1$spalte2 \| \n"
2091	zeile=$(echo "$zeile" \| cut -c41-)
2092	done
2093
2094	spalte1="main program":; spalte2=$mainprog
2095	printf "\| $spalte1$spalte2 \| \n"
2096	else
2097	spalte1=executable:; spalte2=$executable
2098	printf "\| $spalte1$spalte2 \| \n"
2099	fi
2100	printf "\| \| \n"
2101	spalte1="base name of files":; spalte2=$fname
2102	printf "\| $spalte1$spalte2 \| \n"
2103	if [[ $fname != $afname ]]
2104	then
2105	spalte1="base name of input files":; spalte2=$afname
2106	printf "\| $spalte1$spalte2 \| \n"
2107	fi
2108	spalte1="INPUT control list":; spalte2=$input_list
2109	printf "\| $spalte1$spalte2 \| \n"
2110	spalte1="OUTPUT control list":; spalte2=$output_list
2111	printf "\| $spalte1$spalte2 \| \n"
2112
2113	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2114	then
2115	spalte1="memory demand / PE":; spalte2="$memory MB"
2116	printf "\| $spalte1$spalte2 \| \n"
2117	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2118	printf "\| $spalte1$spalte2 \| \n"
2119	fi
2120
2121	if [[ $do_compile = true ]]
2122	then
2123	printf "\| \| \n"
2124	printf "\| Files to be compiled: \| \n"
2125	zeile=$source_list
2126	while [[ "$zeile" != "" ]]
2127	do
2128	spalte3=$zeile
2129	printf "\| $spalte3 \| \n"
2130	zeile=$(echo "$zeile" \| cut -c61-)
2131	done
2132	fi
2133	printf "#--------------------------------------------------------------#"
2134
2135
2136
2137	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2138	if [[ $do_trace = true ]]
2139	then
2140	(( i = 0 ))
2141	while (( i < iin ))
2142	do
2143	(( i = i + 1 ))
2144	if (( i == 1 ))
2145	then
2146	printf "\n\n >>> INPUT-file assignments:\n"
2147	fi
2148	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2149	done
2150	(( i = 0 ))
2151	while (( i < iout ))
2152	do
2153	(( i = i + 1 ))
2154	if (( i == 1 ))
2155	then
2156	printf "\n\n >>> OUTPUT-file assignments:\n"
2157	fi
2158	printf "\n ${localout[$i]} : ${pathout[$i]}"
2159	done
2160	(( i = 0 ))
2161	while (( i < iic ))
2162	do
2163	(( i = i + 1 ))
2164	if (( i == 1 ))
2165	then
2166	printf "\n\n >>> INPUT-commands:\n"
2167	fi
2168	printf "\n ${in_command[$i]}"
2169	done
2170	(( i = 0 ))
2171	while (( i < ioc ))
2172	do
2173	(( i = i + 1 ))
2174	if (( i == 1 ))
2175	then
2176	printf "\n\n >>> OUTPUT-commands:\n"
2177	fi
2178	printf "\n ${out_command[$i]}"
2179	done
2180	fi
2181
2182
2183	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2184	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2185	then
2186	antwort=dummy
2187	printf "\n\n"
2188	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2189	do
2190	printf " >>> everything o.k. (y/n) ? "
2191	read antwort
2192	done
2193	if [[ $antwort = n \|\| $antwort = N ]]
2194	then
2195	locat=user_abort; (( iec = 0 )); exit
2196	fi
2197	if [[ $do_batch = true ]]
2198	then
2199	printf " >>> batch-job will be created and submitted"
2200	else
2201	if [[ $local_compile = false ]]
2202	then
2203	printf " >>> MRUN will now continue to execute on this machine"
2204	else
2205	printf " >>> a test compilation will now be carried out on this machine"
2206	fi
2207	fi
2208	fi
2209
2210	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2211
2212	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2213	check_depository="${working_directory}/trunk/UTIL"
2214	check_sources="${working_directory}/tmp_check_namelist_files"
2215	skip_check=false
2216
2217	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2218	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2219	then
2220	skip_check=true
2221	reason="run on remote host or parameter file check has not been compiled."
2222	fi
2223	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2224	then
2225	skip_check=true
2226	reason="parameter file check has not been compiled."
2227	fi
2228
2229	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2230	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2231	then
2232	skip_check=true
2233	reason="serial run."
2234	fi
2235
2236	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2237	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2238	if [[ $check_namelist_files == false ]]
2239	then
2240	skip_check=true
2241	reason="-z option set."
2242	fi
2243
2244	if [[ $fromhost != $localhost ]]
2245	then
2246	skip_check=true
2247	reason="submitting host is local host."
2248	fi
2249
2250	if [[ $run_coupled_model == true ]]
2251	then
2252	skip_check=true
2253	reason="coupled run."
2254	fi
2255
2256	if [[ $restart_run == true ]]
2257	then
2258	skip_check=true
2259	reason="restart run."
2260
2261	fi
2262
2263	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2264	((last_char = `echo $filename_input \| wc -c` - 1))
2265	last_char=`echo $filename_input \|cut -c$last_char`
2266	if [[ "$last_char" == "f" ]]
2267	then
2268	skip_check=true
2269	reason="restart run."
2270	fi
2271
2272	if [[ $skip_check == false ]]
2273	then
2274
2275	tmp_check=${working_directory}/tmp_check
2276
2277	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2278	# NOT NECESSARILY REQUIRED
2279	line=""
2280	found=false
2281	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2282	while read line1
2283	do
2284	line="$line1"
2285	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2286	then
2287	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2288	found=true
2289	fi
2290	done < $tmp_check
2291
2292	if [[ $found = false ]]
2293	then
2294	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2295	fi
2296
2297	rm -rf ${working_directory}/tmp_check
2298
2299	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2300	for item in $input_list
2301	do
2302	if [[ "$item" == "restart" ]]
2303	then
2304	check_restart=1
2305	else
2306	check_restart=0
2307	fi
2308	done
2309
2310	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2311	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2312	then
2313	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2314	locat=check_namelist; exit
2315	fi
2316
2317	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2318	if [[ $check_restart == 1 ]]
2319	then
2320
2321
2322
2323	filenamef="${filename_input}f"
2324	if [[ ! -f $filenamef ]]
2325	then
2326	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2327	check_restart=0
2328	answer=dummy
2329	printf "\n\n"
2330
2331	if [[ $silent == false ]]
2332	then
2333	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2334	do
2335	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2336	read answer
2337	done
2338	if [[ $answer = a \|\| $answer = A ]]
2339	then
2340	printf "\n +++ Aborting...."
2341	locat=normal; exit
2342	fi
2343	fi
2344	else
2345	check_restart=1
2346	fi
2347	fi
2348
2349	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2350	mkdir $check_sources
2351	cd $check_sources
2352
2353
2354	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2355	if [[ -d $add_source_path ]]
2356	then
2357	printf "\n\n *** copying files from $check_depository"
2358	cp $check_depository/check_namelist_files.tar ./
2359
2360	printf "\n\n *** untar of makefile and source files in $check_sources"
2361	tar -xf check_namelist_files.tar > /dev/null 2>&1
2362
2363	printf "\n\n *** adding user code."
2364	cp $add_source_path/* ./
2365	touch check_namelist_files.f90
2366
2367	# GET COMPILER OPTIONS AND PERFORM MAKE
2368	printf "\n\n *** compiling code if necessary...\n"
2369
2370	# workaround for batch jobs on local machine (lcxe6)
2371	if [[ $do_batch == true && $do_remote == false ]]
2372	then
2373	eval $init_cmds
2374	fi
2375
2376	# GET CHECK OPTIONS
2377	line=""
2378	found=false
2379
2380	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2381
2382	while read line1
2383	do
2384
2385	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2386	then
2387	line="$line1"
2388	fi
2389
2390	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2391	then
2392	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2393	line="$line "
2394	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2395	found=true
2396	fi
2397
2398	done < $tmp_check
2399	copts_check="$copts_check -D__check -D__parallel"
2400
2401	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2402
2403	# GET MAKE OUTPUT
2404	if [[ $? != 0 ]]
2405	then
2406	printf "\n +++ error during make."
2407	answer=dummy
2408	printf "\n\n"
2409	if [[ $silent == false ]]
2410	then
2411	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2412	do
2413	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2414	read answer
2415	done
2416	if [[ $answer = a \|\| $answer = A ]]
2417	then
2418	printf "\n +++ Aborting..."
2419	rm -rf $check_sources
2420	locat=normal; exit
2421	else
2422	skip_check=true
2423	fi
2424	else
2425	skip_check=true
2426	fi
2427	fi
2428	else
2429	cp $PALM_BIN/check_namelist_files.x ./
2430	fi
2431
2432	cp $filename_input ./PARIN
2433	if [[ $check_restart == 1 ]]
2434	then
2435	cp $filenamef ./PARINF
2436	fi
2437
2438	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2439	then
2440	printf "\n *** adding topography data"
2441	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2442
2443	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2444	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2445	# WHICH REQUIRE SUFFICIENT MEMORY
2446	ulimit -s unlimited
2447	fi
2448
2449	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2450	cat > ENVPAR << %%END%%
2451	&envpar run_identifier = '$fname', host = '$host',
2452	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2453	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2454	maximum_cpu_time_allowed = ${cpumax}.,
2455	revision = '$global_revision',
2456	local_dvrserver_running = $local_dvrserver_running /
2457
2458	%%END%%
2459
2460	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2461	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2462	printf "\n +++ WARNING: check_namelist_files.x not found."
2463	answer=dummy
2464	printf "\n\n"
2465
2466	if [[ $silent == false ]]
2467	then
2468	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2469	do
2470	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2471	read answer
2472	done
2473	if [[ $answer = a \|\| $answer = A ]]
2474	then
2475	printf "\n +++ Aborting..."
2476	rm -rf $check_sources
2477	locat=normal; exit
2478	else
2479	printf "\n *** skipping parameter file check."
2480
2481	fi
2482	fi
2483
2484	elif [[ $skip_check == false ]]
2485	then
2486	# STARTING THE PARAMETER FILE CHECK
2487	printf "\n\n *** starting parameter file check..."
2488
2489	# CHECKING THE P3D FILE
2490	printf "\n\n (1) checking $filename_input"
2491	echo "$numprocs 0 0" > VARIN
2492	errors=`./check_namelist_files.x < VARIN 2>&1`
2493
2494	check_error=false
2495	if [[ "$errors" == "" ]]
2496	then
2497	printf " --> o.k."
2498	else
2499	printf " --> failed."
2500	check_error=true
2501	printf "\n\n $errors"
2502	fi
2503
2504	# CHECKING THE PD3F FILE IF NECESSARY
2505	if [[ $check_restart == 1 && $check_error == false ]]
2506	then
2507	printf "\n\n (2) checking $filenamef"
2508
2509	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2510	found=false
2511	cat PARINF\|while read line
2512	do
2513	line=$(echo $line\|sed 's/ //g')
2514	if [[ $line == "&inipar" ]]
2515	then
2516	start_search=true
2517	fi
2518
2519	if [[ $start_search == true ]]
2520	then
2521	if [[ $line == "initializing_actions='read_restart_data'" ]]
2522	then
2523	found=true
2524	break
2525	fi
2526	fi
2527
2528	if [[ $line == "/" ]]
2529	then
2530	start_search=false
2531	fi
2532
2533	done
2534
2535	if [[ $found = false ]]
2536	then
2537	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2538	printf "\n in &inipar list in $fname$p3df_suffix."
2539	rm -rf $check_sources
2540	locat=check_namelist; exit
2541	fi
2542
2543	# READ max_user_pr FROM FILES
2544	if [[ -f parin_for_check ]]
2545	then
2546	read max_pr_user < parin_for_check
2547	else
2548	max_user_pr=0
2549	fi
2550
2551	echo "$numprocs 1 $max_pr_user" > VARIN
2552	errors=`./check_namelist_files.x < VARIN 2>&1`
2553
2554	if [[ "$errors" == "" ]]
2555	then
2556	printf " --> o.k."
2557	else
2558	printf " --> failed."
2559	check_error=true
2560	printf "\n\n $errors"
2561	fi
2562	fi
2563
2564	# REPORT ERRORS AND CONTINUE/EXIT
2565	if [[ $check_error == true ]]
2566	then
2567	printf "\n +++ errors found in the parameter file!\n"
2568	answer=dummy
2569	printf "\n\n"
2570
2571	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2572	do
2573	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2574	read answer
2575	done
2576
2577	if [[ $answer = a \|\| $answer = A ]]
2578	then
2579	printf "\n +++ Aborting..."
2580	rm -rf $check_sources
2581	locat=normal; exit
2582	fi
2583	else
2584	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2585	fi
2586	rm -rf $check_sources
2587	fi
2588	else
2589	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2590	fi
2591
2592	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2593	rm -rf $check_sources
2594	cd $working_directory
2595
2596
2597	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2598	# CHENDE AKTIONEN DURCHGEFUEHRT
2599	if [[ $do_batch = false ]]
2600	then
2601
2602
2603	# TEMPORAEREN KATALOG ERZEUGEN
2604	mkdir -p $TEMPDIR
2605	chmod go+rx $TEMPDIR
2606	tmpcreate=true
2607
2608	# set striping on lustre file system
2609	# if [[ $localhost = lcsgih ]]
2610	# then
2611	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2612	# lfs getstripe $TEMPDIR
2613	# fi
2614
2615
2616	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2617	# TEMPORAERES VERZEICHNIS KOPIEREN
2618	if [[ $do_compile = true ]]
2619	then
2620
2621	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2622	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2623	if [[ $localhost = nech ]]
2624	then
2625	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2626	if mkdir -p $TEMPDIR_COMPILE
2627	then
2628	printf "\n *** \"$TEMPDIR_COMPILE\" "
2629	printf "\n is generated as temporary directory for cross compiling\n"
2630	else
2631	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2632	printf "\n needed for cross compilation failed"
2633	locat=compile
2634	exit
2635	fi
2636	else
2637	TEMPDIR_COMPILE=$TEMPDIR
2638	fi
2639
2640
2641	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2642	line=""
2643	grep "%depository_path" $config_file > tmp_mrun
2644	while read line
2645	do
2646	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2647	then
2648	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2649	then
2650	global_depository_path=`echo $line \| cut -d" " -s -f2`
2651	fi
2652	fi
2653	done < tmp_mrun
2654
2655	line=""
2656	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2657	while read line
2658	do
2659	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2660	then
2661	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2662	then
2663	local_depository_path=`echo $line \| cut -d" " -s -f2`
2664	fi
2665	fi
2666	done < tmp_mrun
2667
2668	if [[ "$local_depository_path" = "" ]]
2669	then
2670	if [[ "$global_depository_path" != "" ]]
2671	then
2672	local_depository_path=$global_depository_path
2673	else
2674	printf "\n\n +++ no depository path found in configuration file"
2675	printf "\n for local host \"$localhost\" "
2676	printf "\n please set \"\%depository_path\" in configuration file\n"
2677	locat=config_file; exit
2678	fi
2679	fi
2680	eval local_depository_path=$local_depository_path
2681	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2682	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2683
2684
2685	basename=`print $mainprog \| cut -f1 -d"."`
2686	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2687	if [[ ! -f $make_depository ]]
2688	then
2689	printf "\n"
2690	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2691	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2692	else
2693	cp $make_depository $TEMPDIR_COMPILE
2694	cd $TEMPDIR_COMPILE
2695	tar -xf $make_depository > /dev/null 2>&1
2696	cd - > /dev/null
2697	fi
2698
2699	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2700
2701	else
2702
2703	cp $executable ${TEMPDIR}/a.out
2704
2705	fi
2706
2707
2708	# WECHSEL IN TEMPORAEREN KATALOG
2709	cd $TEMPDIR
2710	printf "\n *** changed to temporary directory: $TEMPDIR"
2711
2712
2713	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2714	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2715	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2716	# ERMITTELN
2717	(( i = 0 ))
2718	while (( i < iout ))
2719	do
2720	(( i = i + 1 ))
2721	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2722	then
2723	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2724	else
2725	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2726	fi
2727	done
2728
2729
2730	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2731	if [[ $do_compile = true ]]
2732	then
2733
2734
2735	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2736	printf "\n\n\n *** compilation starts \n$striche\n"
2737	printf " *** compilation with make using following options:\n"
2738	printf " make depository: $make_depository"
2739	if [[ "$mopts" != "" ]]
2740	then
2741	printf " make options: $mopts\n"
2742	fi
2743	printf " compilername: $compiler_name\n"
2744	printf " compiler options: $fopts\n"
2745	printf " preprocessor directives: $cpp_options \n"
2746	printf " linker options: $lopts \n"
2747	if [[ "$modules" != "" ]]
2748	then
2749	printf " modules to be load: $modules \n"
2750	fi
2751	printf " source code files: $source_list \n"
2752
2753	if [[ $localhost = nech ]]
2754	then
2755	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2756	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2757	cp $TEMPDIR_COMPILE/a.out .
2758	[[ $? != 0 ]] && compile_error=true
2759	rm -rf $TEMPDIR_COMPILE
2760	elif [[ $localhost = ibmh ]]
2761	then
2762	printf " compiler is called via ssh on \"plogin1\" \n"
2763	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2764	[[ ! -f a.out ]] && compile_error=true
2765	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2766	elif [[ $localhost = lcsgib ]]
2767	then
2768	printf " compiler is called via ssh on \"bicegate0\" \n"
2769	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2770	[[ ! -f a.out ]] && compile_error=true
2771	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2772	elif [[ $localhost = lcsgih ]]
2773	then
2774	printf " compiler is called via ssh on \"hicegate0\" \n"
2775	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2776	[[ ! -f a.out ]] && compile_error=true
2777	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2778	elif [[ $localhost = lcflow ]]
2779	then
2780	printf " compiler is called via ssh on \"flow\" \n"
2781	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2782	[[ ! -f a.out ]] && compile_error=true
2783	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2784	else
2785	[[ "$init_cmds" != "" ]] && eval $init_cmds
2786	[[ "$module_calls" != "" ]] && eval $module_calls
2787	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2788
2789	fi
2790
2791	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2792	then
2793	printf "\n +++ error occured while compiling or linking"
2794	locat=compile
2795
2796	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2797	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2798	# then
2799	exit
2800	# else
2801	# locat=normal
2802	# fi
2803	else
2804	printf "$striche\n *** compilation finished \n"
2805	fi
2806	fi
2807
2808
2809	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2810	if [[ $local_compile = true ]]
2811	then
2812	cd $HOME
2813	rm -rf $TEMPDIR
2814	locat=local_compile; exit
2815	fi
2816
2817
2818	# BEREITSTELLEN DER INPUT-DATEIEN
2819	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2820	(( i = 0 ))
2821	while (( i < iin ))
2822	do
2823	(( i = i + 1 ))
2824	if (( i == 1 ))
2825	then
2826	printf "\n\n *** providing INPUT-files:\n$striche"
2827	fi
2828
2829
2830	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2831	if [[ "${transin[$i]}" = unavailable ]]
2832	then
2833	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2834	then
2835	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2836	printf "\n is not available!"
2837	else
2838	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2839	printf "\n is not available!"
2840	fi
2841	continue
2842	fi
2843
2844	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2845	files_for_pes=false; datentyp=file
2846	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2847	then
2848	files_for_pes=true; datentyp=directory
2849	actionin[$i]=""
2850	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2851	then
2852	actionin[$i]=""
2853	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2854	then
2855	files_for_pes=true; datentyp=directory
2856	actionin[$i]="ar"
2857	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2858	then
2859	actionin[$i]="ar"
2860	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2861	then
2862	files_for_pes=true; datentyp=directory
2863	actionin[$i]="fl"
2864	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2865	then
2866	actionin[$i]="fl"
2867	fi
2868
2869	if [[ $files_for_pes = true ]]
2870	then
2871	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2872	else
2873	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2874	fi
2875
2876	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2877	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2878	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2879	# SERVER ZU HOLEN
2880	if [[ "${actionin[$i]}" = fl ]]
2881	then
2882	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2883	if [[ $files_for_pes = false ]]
2884	then
2885	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2886	then
2887	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2888	got_tmp[$i]=true
2889	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2890	then
2891	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2892	printf "\n *** trying to use backup copy in \"$WORK\" "
2893	cp $WORK/${frelin[$i]} ${localin[$i]}
2894	else
2895	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2896	printf "\n or \"$tmp_data_catalog\" does not exist!"
2897	printf "\n *** trying to get copy from archive"
2898	actionin[$i]=ar
2899	fi
2900	else
2901	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2902	then
2903	mkdir ${localin[$i]}
2904	cd $tmp_data_catalog/${frelin[$i]}
2905	for file in $(ls *)
2906	do
2907	ln $file $TEMPDIR/${localin[$i]}
2908	done
2909	cd $TEMPDIR
2910	got_tmp[$i]=true
2911	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2912	then
2913	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2914	printf "\n *** trying to use backup copy in \"$WORK\" "
2915	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2916	else
2917	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2918	printf "\n or \"$tmp_data_catalog\" does not exist!"
2919	printf "\n *** trying to get copy from archive"
2920	actionin[$i]=ar
2921	fi
2922	fi
2923	fi
2924
2925
2926	# DATEI LIEGT AUF ARCHIV-SERVER
2927	if [[ "${actionin[$i]}" = ar ]]
2928	then
2929
2930	if [[ $files_for_pes = false ]]
2931	then
2932	printf "\n file will be restored from archive-system ($archive_system)!"
2933	else
2934	printf "\n directory will be restored from archive-system ($archive_system)!"
2935	fi
2936
2937	file_restored=false
2938
2939	if [[ $archive_system = asterix ]]
2940	then
2941	do_stagein=true
2942	(( stagein_anz = 0 ))
2943	while [[ $do_stagein = true ]]
2944	do
2945	if [[ $files_for_pes = false ]]
2946	then
2947	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2948	else
2949	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2950	fi
2951	cat STAGEIN_OUTPUT
2952	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2953	then
2954	file_restored=true
2955	do_stagein=false
2956	else
2957	(( stagein_anz = stagein_anz + 1 ))
2958	if (( stagein_anz == 10 ))
2959	then
2960	printf "\n +++ stagein stoped after 10 tries"
2961	locat=stage
2962	exit
2963	fi
2964	printf "\n +++ restoring from archive failed, trying again:"
2965	sleep 900
2966	fi
2967	done
2968	elif [[ $archive_system = DMF ]]
2969	then
2970	if [[ $files_for_pes = false ]]
2971	then
2972	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2973	locat=DMF
2974	exit
2975	else
2976	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2977	cp -r $ARCHIVE/${frelin[$i]} $PWD
2978	file_restored=true
2979	fi
2980	elif [[ $archive_system = tivoli ]]
2981	then
2982	if [[ $files_for_pes = false ]]
2983	then
2984	if [[ $localhost = lcsgih ]]
2985	then
2986	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2987	else
2988	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2989	fi
2990	else
2991	(( inode = 0 ))
2992	while (( inode < nodes ))
2993	do
2994	if [[ $localhost = lcsgih ]]
2995	then
2996	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2997	else
2998	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2999	fi
3000	(( inode = inode + 1 ))
3001	done
3002	fi
3003	file_restored=true
3004	elif [[ $archive_system = ut ]]
3005	then
3006	if [[ $files_for_pes = false ]]
3007	then
3008	cp $UT/${frelin[$i]} .
3009	else
3010	(( inode = 0 ))
3011	while (( inode < nodes ))
3012	do
3013	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3014	(( inode = inode + 1 ))
3015	done
3016	fi
3017	file_restored=true
3018	else
3019	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3020	locat=rearchive
3021	exit
3022	fi
3023
3024	if [[ $file_restored = true ]]
3025	then
3026
3027	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3028	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3029	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3030	if [[ $files_for_pes = false ]]
3031	then
3032	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3033	else
3034	mkdir $tmp_data_catalog/${frelin[$i]}
3035	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3036	fi
3037	got_tmp[$i]=true
3038
3039	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3040	mv ${frelin[$i]} ${localin[$i]}
3041
3042	fi
3043	fi
3044
3045
3046	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3047	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3048	then
3049
3050	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3051	then
3052
3053	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3054	printf "\n file will be provided for $numprocs processors"
3055	mkdir ${localin[$i]}
3056	ival=$numprocs
3057	(( ii = 0 ))
3058	while (( ii <= ival-1 ))
3059	do
3060	if (( ii < 10 ))
3061	then
3062	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3063	elif (( ii < 100 ))
3064	then
3065	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3066	elif (( ii < 1000 ))
3067	then
3068	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3069	else
3070	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3071	fi
3072	(( ii = ii + 1 ))
3073	done
3074
3075	else
3076
3077	if [[ $files_for_pes = true ]]
3078	then
3079
3080	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3081	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3082	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3083	# PER MOVE UMBENANNT WERDEN
3084	printf "\n providing $numprocs files for the respective processors"
3085	mkdir ${localin[$i]}
3086	if [[ $link_local_input = true ]]
3087	then
3088	printf " using ln -f\n"
3089	cd ${absnamein[$i]}
3090	for file in $(ls *)
3091	do
3092	ln -f $file ${localin[$i]}
3093	done
3094	cd $TEMPDIR
3095	fi
3096	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3097	if [[ ! -f "${localin[$i]}/_0000" ]]
3098	then
3099	if [[ $link_local_input = true ]]
3100	then
3101	printf " ln failed for .../_0000, using cp...\n"
3102	fi
3103	cp -r ${absnamein[$i]}/* ${localin[$i]}
3104	fi
3105
3106	else
3107	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3108	if [[ $link_local_input = true ]]
3109	then
3110	printf " using ln -f\n"
3111	ln -f ${absnamein[$i]} ${localin[$i]}
3112	fi
3113	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3114	if [[ ! -f "${localin[$i]}" ]]
3115	then
3116	if [[ $link_local_input = true ]]
3117	then
3118	printf " ln failed, using cp...\n"
3119	fi
3120	cp ${absnamein[$i]} ${localin[$i]}
3121	fi
3122	fi
3123	fi
3124	fi
3125
3126	done
3127	if (( i != 0 ))
3128	then
3129	printf "\n$striche\n *** all INPUT-files provided \n"
3130	fi
3131
3132
3133	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3134	(( i = 0 ))
3135	while (( i < iic ))
3136	do
3137	(( i = i + 1 ))
3138	if (( i == 1 ))
3139	then
3140	printf "\n\n *** execution of INPUT-commands:\n$striche"
3141	fi
3142	printf "\n >>> ${in_command[$i]}"
3143	eval ${in_command[$i]}
3144	if (( i == iic ))
3145	then
3146	printf "\n$striche\n"
3147	fi
3148	done
3149
3150
3151	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3152	cpurest=${cpumax}.
3153
3154
3155	# START DVR STREAMING SERVER
3156	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3157	then
3158	if [[ "$dvr_server" != "" ]]
3159	then
3160
3161	printf "\n\n *** preparing the dvr streaming server configuration file"
3162
3163	# Check, if a dvr server is already running
3164	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3165	if [[ "$running_dvrserver_id" != "" ]]
3166	then
3167
3168	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3169	printf "\n This server is used instead starting a new one!"
3170	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3171
3172	else
3173
3174	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3175	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3176	then
3177	cp ${PALM_BIN}/.dvrserver.config .
3178
3179	# Entering the BASEDIR, UID and GID into this file
3180	user_id=`id -u`
3181	group_id=`id -g`
3182	# & is needed as seperator, because TEMPDIR contains /
3183	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3184	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3185	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3186	mv .dvrserver.3 .dvrserver.config
3187	rm .dvrserver.1 .dvrserver.2
3188
3189	# Start dvr server in background, get his id and print on terminal
3190	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3191	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3192	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3193	local_dvrserver_running=.TRUE.
3194	else
3195	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3196	printf "\n \"$PALM_BIN\" "
3197	locat=dvr
3198	exit
3199	fi
3200
3201	fi
3202
3203	else
3204	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3205	fi
3206	fi
3207
3208
3209	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3210	# LESEN VON PALM)
3211	cat > ENVPAR << %%END%%
3212	&envpar run_identifier = '$fname', host = '$localhost',
3213	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3214	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3215	maximum_cpu_time_allowed = ${cpumax}.,
3216	revision = '$global_revision',
3217	local_dvrserver_running = $local_dvrserver_running /
3218
3219	%%END%%
3220
3221
3222	# PROGRAMMSTART
3223	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3224	PATH=$PATH:$TEMPDIR
3225
3226	# MPI debug option (argument checking, slows down execution due to increased latency)
3227	if [[ "$mpi_debug" = true ]]
3228	then
3229	export MPI_CHECK_ARGS=1
3230	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3231	fi
3232
3233	if [[ "$totalview" = true ]]
3234	then
3235	printf "\n *** totalview debugger will be used"
3236	tv_opt="-tv"
3237	else
3238	tv_opt=""
3239	fi
3240
3241	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3242	then
3243	if [[ "$ENVIRONMENT" = BATCH ]]
3244	then
3245	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3246	then
3247	printf "\n +++ debug is allowed in interactive mode only"
3248	locat=debug
3249	exit
3250	fi
3251	fi
3252	if [[ $localhost = ibmh ]]
3253	then
3254
3255	# SETUP THE IBM MPI ENVIRONMENT
3256	export MP_SHARED_MEMORY=yes
3257	export AIXTHREADS_SCOPE=S
3258	export OMP_NUM_THREADS=$threads_per_task
3259	export AUTHSTATE=files
3260	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3261
3262	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3263	export MP_ADAPTER_USE=shared
3264	export MP_CPU_USE=multiple
3265	export MP_TIMEOUT=1200
3266
3267	unset MP_TASK_AFFINITY
3268
3269	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3270	#(( ii = 1 ))
3271	#while (( ii <= $numprocs ))
3272	#do
3273	# echo $localhost_realname >> hostfile
3274	# (( ii = ii + 1 ))
3275	#done
3276	#export MP_HOSTFILE=hostfile
3277
3278	if [[ "$LOADLBATCH" = yes ]]
3279	then
3280	totalview poe a.out $ROPTS
3281	else
3282	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3283	export TVDSVRLAUNCHCMD=ssh
3284	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3285	fi
3286	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3287	then
3288	# CURRENTLY NO DEBUGGER ON LCSGI
3289	if [[ $run_coupled_model = true ]]
3290	then
3291	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3292	locat=debug
3293	exit
3294	else
3295	echo "no_coupling" > runfile_atmos
3296	fi
3297	(( ii = $numprocs / $threads_per_task ))
3298	export OMP_NUM_THREADS=$threads_per_task
3299	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3300	if [[ $threads_per_task != 1 ]]
3301	then
3302	printf "\n threads per task: $threads_per_task"
3303	fi
3304	printf "\n\n"
3305	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3306	then
3307	# export MPI_LAUNCH_TIMEOUT=360
3308	if [[ "$totalview" = true ]]
3309	then
3310	printf "\n running totalview debugger"
3311	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3312	else
3313	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3314	fi
3315	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3316	then
3317	# ulimit -s 300000 # A too large stack size causes problems
3318	# export MV2_NUM_PORTS=2
3319	# export MV2_CPU_MAPPING=0:1:2:3
3320	if [[ "$totalview" = true ]]
3321	then
3322	printf "\n running totalview debugger"
3323	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3324	else
3325	mpiexec ./a.out $ROPTS < runfile_atmos
3326	fi
3327	fi
3328	else
3329	printf "\n +++ no debug available on \"$localhost\" "
3330	printf "\n or not implemented in mrun so far"
3331	locat=debug
3332	exit
3333	fi
3334
3335	# end debug mode
3336	else
3337
3338	# normal execution
3339	if [[ -n $numprocs ]]
3340	then
3341	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3342	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3343	then
3344	# SETUP THE IBM MPI ENVIRONMENT
3345	if [[ $host != ibmh && $host != ibmkisti ]]
3346	then
3347	export MP_SHARED_MEMORY=yes
3348	export AIXTHREAD_SCOPE=S
3349	export OMP_NUM_THREADS=$threads_per_task
3350	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3351	export AUTHSTATE=files
3352	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3353	# export MP_PRINTENV=yes
3354
3355	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3356	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3357	export MP_WAIT_MODE=poll
3358	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3359	fi
3360
3361	if [[ $host = ibmkisti ]]
3362	then
3363	export LANG=en_US
3364	export MP_SHARED_MEMORY=yes
3365	if [[ $threads_per_task = 1 ]]
3366	then
3367	export MP_SINGLE_THREAD=yes
3368	export MEMORY_AFFINITY=MCM
3369	else
3370	export OMP_NUM_THREADS=$threads_per_task
3371	fi
3372	fi
3373
3374	if [[ "$LOADLBATCH" = yes ]]
3375	then
3376	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3377	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3378	then
3379	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3380	else
3381	if [[ $run_coupled_model = false ]]
3382	then
3383	if [[ "$ocean_file_appendix" = true ]]
3384	then
3385	echo "precursor_ocean" > runfile_atmos
3386	else
3387	echo "precursor_atmos" > runfile_atmos
3388	fi
3389	else
3390	(( iia = $numprocs_atmos / $threads_per_task ))
3391	(( iio = $numprocs_ocean / $threads_per_task ))
3392	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3393	printf "\n using $coupled_mode coupling"
3394	printf "\n\n"
3395	echo "coupled_run $iia $iio" > runfile_atmos
3396	fi
3397	poe ./a.out $ROPTS < runfile_atmos
3398	fi
3399	else
3400	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3401	then
3402	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3403	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3404	then
3405	if [[ -f $hostfile ]]
3406	then
3407	cp $hostfile hostfile
3408	else
3409	(( ii = 1 ))
3410	while (( ii <= $numprocs ))
3411	do
3412	echo $localhost_realname >> hostfile
3413	(( ii = ii + 1 ))
3414	done
3415	fi
3416	export MP_HOSTFILE=hostfile
3417	if [[ $run_coupled_model = false ]]
3418	then
3419	if [[ "$ocean_file_appendix" = true ]]
3420	then
3421	echo "precursor_ocean" > runfile_atmos
3422	else
3423	echo "precursor_atmos" > runfile_atmos
3424	fi
3425	else
3426	(( iia = $numprocs_atmos / $threads_per_task ))
3427	(( iio = $numprocs_ocean / $threads_per_task ))
3428	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3429	printf "\n using $coupled_mode coupling"
3430	printf "\n\n"
3431	echo "coupled_run $iia $iio" > runfile_atmos
3432	fi
3433	if [[ $localhost = ibmy ]]
3434	then
3435	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3436	else
3437	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3438	fi
3439
3440	else
3441	if [[ "$host_file" = "" ]]
3442	then
3443	printf "\n +++ no hostfile given in configuration file"
3444	locat=config_file
3445	exit
3446	else
3447	eval host_file=$host_file
3448	fi
3449	export MP_HOSTFILE=$host_file
3450	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3451	fi
3452	fi
3453	elif [[ $host = nech \|\| $host = necriam ]]
3454	then
3455	(( ii = nodes ))
3456	if [[ $ii = 1 ]]
3457	then
3458	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3459	export MPIPROGINF=YES
3460	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3461	echo "*** execution on single node with mpirun"
3462	mpirun -np $numprocs ./a.out $ROPTS
3463	else
3464	(( i = 0 ))
3465	while (( i < ii ))
3466	do
3467	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3468	(( i = i + 1 ))
3469	done
3470
3471	echo "#!/bin/sh" > mpi_exec_shell
3472	echo " " >> mpi_exec_shell
3473	echo "set -u" >> mpi_exec_shell
3474	echo "F_ERRCNT=0" >> mpi_exec_shell
3475	echo "MPIPROGINV=YES" >> mpi_exec_shell
3476	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3477	echo "cpurest=$cpurest" >> mpi_exec_shell
3478	echo "fname=$fname" >> mpi_exec_shell
3479	echo "localhost=$localhost" >> mpi_exec_shell
3480	echo "return_addres=$return_addres" >> mpi_exec_shell
3481	echo "return_username=$return_username" >> mpi_exec_shell
3482	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3483	echo "write_binary=$write_binary" >> mpi_exec_shell
3484	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3485	echo " " >> mpi_exec_shell
3486	echo "export F_ERRCNT" >> mpi_exec_shell
3487	echo "export MPIPROGINV" >> mpi_exec_shell
3488	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3489	echo "export cpurest" >> mpi_exec_shell
3490	echo "export fname" >> mpi_exec_shell
3491	echo "export localhost" >> mpi_exec_shell
3492	echo "export return_addres" >> mpi_exec_shell
3493	echo "export return_username" >> mpi_exec_shell
3494	echo "export tasks_per_node" >> mpi_exec_shell
3495	echo "export write_binary" >> mpi_exec_shell
3496	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3497	echo " " >> mpi_exec_shell
3498	echo "exec ./a.out" >> mpi_exec_shell
3499
3500	chmod u+x mpi_exec_shell
3501	export MPIPROGINF=YES
3502	mpirun -f multinode_config &
3503	wait
3504
3505	fi
3506	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3507	then
3508
3509	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3510	# DOES NOT EXIST
3511	if [[ $host != lcsgih && $host != lcsgib ]]
3512	then
3513	if [[ -f $hostfile ]]
3514	then
3515	cp $hostfile hostfile
3516	(( ii = $numprocs / $threads_per_task ))
3517	else
3518	(( ii = 1 ))
3519	while (( ii <= $numprocs / $threads_per_task ))
3520	do
3521	echo $localhost_realname >> hostfile
3522	(( ii = ii + 1 ))
3523	done
3524	fi
3525	eval zeile=\"`head -n $ii hostfile`\"
3526	printf "\n *** running on: $zeile"
3527	fi
3528
3529	(( ii = $numprocs / $threads_per_task ))
3530	export OMP_NUM_THREADS=$threads_per_task
3531	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3532	if [[ $threads_per_task != 1 ]]
3533	then
3534	# increase stack size to unlimited, because large runs
3535	# may abort otherwise
3536	ulimit -Ss unlimited
3537	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3538	fi
3539	if [[ $run_coupled_model = false ]]
3540	then
3541	if [[ "$ocean_file_appendix" = true ]]
3542	then
3543	echo "precursor_ocean" > runfile_atmos
3544	else
3545	echo "precursor_atmos" > runfile_atmos
3546	fi
3547	printf "\n\n"
3548	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3549	then
3550	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3551	then
3552	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3553	# export MPI_DSM_DISTRIBUTE=1
3554	# MPI_DSM_CPULIST: pin MPI processes to cores
3555	if [[ $use_openmp = false ]]
3556	then
3557	if [[ "$sgi_feature" = ice2 ]]
3558	then
3559	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3560	else
3561	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3562	fi
3563	else
3564	unset MPI_DSM_CPULIST
3565	fi
3566	# MPI_IB_RAILS: use both IB rails on ICE2
3567	export MPI_BUFS_PER_HOST=512
3568	export MPI_IB_RAILS=2
3569	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3570	export MPI_CONNECTIONS_THRESHOLD=8192
3571	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3572	export MPI_TYPE_DEPTH=20
3573	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3574	export MPI_GROUP_MAX=64
3575	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3576	if [[ $use_openmp = true ]]
3577	then
3578	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3579	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3580	else
3581	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3582	fi
3583
3584	# next is test for openmp usage
3585	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3586	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3587	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3588	then
3589	export MV2_NUM_PORTS=2
3590	# The default setting of MV2_CPU_MAPPING gives best results
3591	# export MV2_ENABLE_AFFINITY=1
3592	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3593	# if [[ "$sgi_feature" = ice2 ]]
3594	# then
3595	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3596	# else
3597	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3598	# fi
3599	if [[ $use_openmp = true ]]
3600	then
3601	unset MV2_CPU_MAPPING
3602	export MV2_ENABLE_AFFINITY=0
3603	fi
3604	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3605	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3606	if [[ $use_openmp = true ]]
3607	then
3608	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3609	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3610	else
3611	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3612	fi
3613	elif [[ "$mpilib" = impi ]]
3614	then
3615	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3616	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3617	fi
3618	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3619	then
3620	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3621	elif [[ $host = lcflow ]]
3622	then
3623	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3624	elif [[ $host = lcsb ]]
3625	then
3626	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3627	elif [[ $host = lckiaps ]]
3628	then
3629	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3630	elif [[ $host = lckyu* ]]
3631	then
3632	mpiexec -n $ii a.out < runfile_atmos $ROPTS
3633	else
3634	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3635	fi
3636	else
3637
3638	# currently there is no full MPI-2 support on ICE and XT4
3639	(( iia = $numprocs_atmos / $threads_per_task ))
3640	(( iio = $numprocs_ocean / $threads_per_task ))
3641	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3642	printf "\n using $coupled_mode coupling"
3643	printf "\n\n"
3644
3645	if [[ $coupled_mode = "mpi2" ]]
3646	then
3647	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3648	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3649	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3650	then
3651
3652	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3653	then
3654	# export MPI_LAUNCH_TIMEOUT=360
3655	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3656	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3657	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3658	then
3659	# ulimit -s 300000 # A too large stack size causes problems
3660	# export MV2_NUM_PORTS=2
3661	# export MV2_CPU_MAPPING=0:1:2:3
3662	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3663	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3664	fi
3665
3666	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3667	then
3668
3669	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3670	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3671
3672	else
3673	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3674	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3675	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3676	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3677	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3678	fi
3679	wait
3680
3681	else
3682
3683	echo "coupled_run $iia $iio" > runfile_atmos
3684	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3685	then
3686
3687	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3688	then
3689	# export MPI_LAUNCH_TIMEOUT=360
3690	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3691	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3692	then
3693	# ulimit -s 300000 # A too large stack size causes problems
3694	# export MV2_NUM_PORTS=2
3695	# export MV2_CPU_MAPPING=0:1:2:3
3696	mpiexec ./a.out $ROPTS < runfile_atmos
3697	fi
3698
3699	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3700	then
3701
3702	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3703
3704	elif [[ $host = lck \|\| $host = lckordi ]]
3705	then
3706	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3707	fi
3708	wait
3709	fi
3710
3711	fi
3712	elif [[ $host = lckyoto ]]
3713	then
3714	set -xv
3715	export P4_RSHCOMMAND=plesh
3716	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3717	if [[ "$ENVIRONMENT" = BATCH ]]
3718	then
3719	if [[ "$cond2" = fujitsu ]]
3720	then
3721	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3722	elif [[ "cond2" = pgi ]]
3723	then
3724	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3725	else
3726	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3727	fi
3728	else
3729	if [[ "$cond2" = "" ]]
3730	then
3731	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3732	else
3733	mpirun -np $numprocs ./a.out $ROPTS
3734	fi
3735	fi
3736	set +xv
3737	elif [[ $host = lctit ]]
3738	then
3739	export OMP_NUM_THREADS=$threads_per_task
3740	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3741	if [[ "$threads_per_task" != 1 ]]
3742	then
3743	export MV2_ENABLE_AFFINITY=0
3744	fi
3745	echo "----- PBS_NODEFILE content:"
3746	cat $PBS_NODEFILE
3747	echo "-----"
3748	(( ii = $numprocs / $threads_per_task ))
3749	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3750	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3751	else
3752	mpprun -n $numprocs a.out $ROPTS
3753	fi
3754	[[ $? != 0 ]] && execution_error=true
3755
3756
3757	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3758	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3759	then
3760	apprentice
3761	fi
3762	else
3763	a.out $ROPTS
3764	fi
3765	fi
3766	if [[ $? != 0 \|\| $execution_error = true ]]
3767	then
3768
3769	# ABBRUCH BEI LAUFZEITFEHLER
3770	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3771	printf "\n +++ runtime error occured"
3772	locat=execution
3773	exit
3774	else
3775	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3776	printf "\n$striche\n *** execution finished \n"
3777
3778	# Stop the dvr streaming server and process the dvr output in order
3779	# to create dvrs- and html-files containing all streams
3780	if [[ "$dvrserver_id" != "" ]]
3781	then
3782	kill $dvrserver_id
3783	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3784
3785	# If there is a directory, data have been output by the
3786	# streaming server. Otherwise, user has chosen dvrp_output=local
3787	if [[ -d DATA_DVR ]]
3788	then
3789
3790	# Add the current dvr configuration file to the dvr output
3791	# directory
3792	cp .dvrserver.config DATA_DVR
3793
3794	# Process the dvr output (option -s for also generating
3795	# sequence mode data)
3796	process_dvr_output -d DATA_DVR -f $fname -s
3797
3798	else
3799
3800	# Process the local output
3801	process_dvr_output -l -d DATA_DVR -f $fname
3802
3803	fi
3804
3805	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3806	then
3807
3808	# Process dvr output generated in local mode (dvrp_output=local)
3809	process_dvr_output -l -d DATA_DVR -f $fname
3810
3811	fi
3812	fi
3813
3814
3815
3816	# Call of combine_plot_fields in order to merge single files written
3817	# by each PE into one file.
3818	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3819	then
3820	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3821	printf "\n 2d- and/or 3d-data may be incomplete!"
3822	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3823	elif [[ "$combine_plot_fields" == true ]]
3824	then
3825	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3826	combine_plot_fields${block}.x
3827	else
3828	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3829	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3830	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3831	fi
3832
3833
3834
3835	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3836	(( i = 0 ))
3837	while (( i < ioc ))
3838	do
3839	(( i = i + 1 ))
3840	if (( i == 1 ))
3841	then
3842	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3843	fi
3844	printf "\n >>> ${out_command[$i]}"
3845	eval ${out_command[$i]}
3846	if (( i == ioc ))
3847	then
3848	printf "\n$striche\n"
3849	fi
3850	done
3851
3852
3853	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3854	if [[ $do_trace = true ]]
3855	then
3856	printf "\n\n"
3857	ls -al
3858	fi
3859
3860
3861
3862	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3863	(( i = 0 ))
3864	while (( i < iout ))
3865	do
3866	(( i = i + 1 ))
3867	if (( i == 1 ))
3868	then
3869	printf "\n\n *** saving OUTPUT-files:\n$striche"
3870	fi
3871
3872	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3873	files_for_pes=false; filetyp=file
3874	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3875	then
3876	files_for_pes=true; filetyp=directory
3877	actionout[$i]=""
3878	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3879	then
3880	actionout[$i]=""
3881	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3882	then
3883	files_for_pes=true; filetyp=directory
3884	actionout[$i]="ar"
3885	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3886	then
3887	actionout[$i]="ar"
3888	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3889	then
3890	files_for_pes=true; filetyp=directory
3891	actionout[$i]="fl"
3892	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3893	then
3894	actionout[$i]="fl"
3895	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3896	then
3897	files_for_pes=true; filetyp=directory
3898	actionout[$i]="tr"
3899	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3900	then
3901	actionout[$i]="tr"
3902	fi
3903
3904	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3905	then
3906	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3907	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3908	then
3909	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3910	else
3911
3912
3913	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3914	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3915	# REMOTE-RECHNUNGEN
3916	if [[ "${actionout[$i]}" = tr ]]
3917	then
3918	if [[ $localhost != $fromhost ]]
3919	then
3920	if [[ $files_for_pes = false ]]
3921	then
3922	cps=""
3923	cst=""
3924	else
3925	cps=-c
3926	cst="/"
3927	fi
3928	if [[ $localhost = nech ]]
3929	then
3930
3931	# TRANSFER IN EIGENSTAENDIGEM JOB
3932	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3933	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3934	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3935	if [[ $files_for_pes = false ]]
3936	then
3937	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3938	else
3939	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3940	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3941	fi
3942
3943	echo "set -x" > transfer_${localout[$i]}
3944	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3945
3946	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3947	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3948	printf "\n or higher cycle\n"
3949	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3950
3951	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3952
3953	if [[ $localhost = nech ]]
3954	then
3955	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3956	else
3957	if [[ "$LOGNAME" = b323013 ]]
3958	then
3959	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3960	else
3961	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3962	fi
3963	fi
3964
3965	else
3966
3967	# TRANSFER INNERHALB DIESES JOBS
3968	transfer_failed=false
3969	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3970	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3971	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3972	[[ $? != 0 ]] && transfer_failed=true
3973
3974	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3975	# LOKALER MASCHINE ANLEGEN
3976	if [[ $transfer_failed = true ]]
3977	then
3978	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3979	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3980
3981	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3982	# ANLEGEN.
3983	eval local_catalog=${pathout[$i]}
3984	if [[ ! -d $local_catalog ]]
3985	then
3986	printf " *** local directory does not exist. Trying to create:\n"
3987	printf " $local_catalog \n"
3988	mkdir -p $local_catalog
3989	fi
3990	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3991	transfer_problems=true
3992	fi
3993	fi
3994	else
3995
3996	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3997	actionout[$i]=""
3998	fi
3999	fi
4000
4001
4002	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4003	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4004	# REMOTE-RECHNUNGEN
4005	if [[ "${actionout[$i]}" = tra ]]
4006	then
4007	if [[ $localhost != $fromhost ]]
4008	then
4009	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4010	then
4011
4012	# TRANSFER IN EIGENSTAENDIGEM JOB
4013	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4014	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4015	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4016	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4017
4018	echo "set -x" > transfer_${localout[$i]}
4019	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4020
4021	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4022	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4023	printf "\n or higher cycle\n"
4024	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4025
4026	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4027
4028	if [[ $localhost = nech ]]
4029	then
4030	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4031	else
4032	if [[ $LOGNAME = b323013 ]]
4033	then
4034	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4035	else
4036	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4037	fi
4038	fi
4039
4040	else
4041
4042	# TRANSFER INNERHALB DIESES JOBS
4043	transfer_failed=false
4044	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4045	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4046	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4047	[[ $? != 0 ]] && transfer_failed=true
4048
4049	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4050	# LOKALER MASCHINE ANLEGEN
4051	if [[ $transfer_failed = true ]]
4052	then
4053	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4054	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4055
4056	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4057	# ANLEGEN
4058	eval local_catalog=${pathout[$i]}
4059	if [[ ! -d $local_catalog ]]
4060	then
4061	printf " *** local directory does not exist. Trying to create:\n"
4062	printf " $local_catalog \n"
4063	mkdir -p $local_catalog
4064	fi
4065
4066	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4067	transfer_problems=true
4068	fi
4069	fi
4070	else
4071
4072	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4073	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4074	actionout[$i]=a
4075	fi
4076	fi
4077
4078
4079	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4080	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4081	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4082	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4083	if [[ "${actionout[$i]}" = fl ]]
4084	then
4085	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4086	chmod g+rx $tmp_data_catalog
4087	if [[ $files_for_pes = false ]]
4088	then
4089	printf "\n >>> OUTPUT: ${localout[$i]} to"
4090	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4091	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4092	else
4093	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4094	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4095	mkdir $tmp_data_catalog/${frelout[$i]}
4096	cd ${localout[$i]}
4097	for file in $(ls *)
4098	do
4099	ln -f $file $tmp_data_catalog/${frelout[$i]}
4100	done
4101	cd $TEMPDIR
4102	fi
4103
4104
4105	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4106	if [[ $store_on_archive_system = true ]]
4107	then
4108
4109	if [[ $archive_system = asterix ]]
4110	then
4111	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4112	if [[ $files_for_pes = false ]]
4113	then
4114	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4115	else
4116	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4117	fi
4118	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4119	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4120	echo "then" >> archive_${frelout[$i]}
4121	echo " do_stageout=false" >> archive_${frelout[$i]}
4122	echo "else" >> archive_${frelout[$i]}
4123	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4124	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4125	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4126	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4127	if [[ $files_for_pes = false ]]
4128	then
4129	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4130	else
4131	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4132	fi
4133	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4134	echo "fi" >> archive_${frelout[$i]}
4135	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4136	elif [[ $archive_system = DMF ]]
4137	then
4138	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4139	if [[ $files_for_pes = false ]]
4140	then
4141	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4142	locat=DMF
4143	exit
4144	else
4145	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4146	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4147	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4148	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4149	fi
4150	elif [[ $archive_system = tivoli ]]
4151	then
4152	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4153	if [[ $files_for_pes = false ]]
4154	then
4155	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4156	echo "set -x" >> archive_${frelout[$i]}
4157	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4158	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4159	else
4160
4161	echo "set -x" >> archive_${frelout[$i]}
4162	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4163	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4164	cd $tmp_data_catalog
4165	all_files=`ls -1 ${frelout[$i]}/*`
4166	cd - > /dev/null
4167	(( inode = 0 ))
4168	(( tp1 = tasks_per_node + 1 ))
4169	while (( inode < nodes ))
4170	do
4171	# echo "*** all_files = \"$all_files\" "
4172	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4173	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4174	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4175	# echo "*** files = \"$files\" "
4176	# echo "*** all_files = \"$all_files\" "
4177	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4178	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4179	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4180	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4181	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4182	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4183	(( inode = inode + 1 ))
4184	done
4185	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4186	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4187	fi
4188	elif [[ $archive_system = ut ]]
4189	then
4190	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4191	if [[ $files_for_pes = false ]]
4192	then
4193	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4194	echo "set -x" >> archive_${frelout[$i]}
4195	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4196	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4197	else
4198
4199	echo "set -x" >> archive_${frelout[$i]}
4200	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4201	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4202	cd $tmp_data_catalog
4203	all_files=`ls -1 ${frelout[$i]}/*`
4204	cd - > /dev/null
4205	(( inode = 0 ))
4206	(( tp1 = tasks_per_node + 1 ))
4207	while (( inode < nodes ))
4208	do
4209	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4210	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4211	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4212	(( inode = inode + 1 ))
4213	done
4214	fi
4215	elif [[ $archive_system = none ]]
4216	then
4217	printf " +++ archiving on $localhost not available!\n"
4218	fi
4219
4220	if [[ $archive_system != none ]]
4221	then
4222	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4223	then
4224	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4225	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4226	elif [[ $localhost = nech ]]
4227	then
4228	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4229	fi
4230	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4231	fi
4232	else
4233	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4234	fi
4235
4236
4237	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4238	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4239	if [[ $files_for_pes = false ]]
4240	then
4241	cat /dev/null > ${pathout[$i]}
4242	else
4243	mkdir -p ${pathout[$i]}
4244	fi
4245
4246	fi
4247
4248
4249	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4250	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4251	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4252	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4253	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4254	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4255	if [[ "${actionout[$i]}" = ar ]]
4256	then
4257	if [[ $files_for_pes = false ]]
4258	then
4259	printf "\n >>> OUTPUT: ${localout[$i]} to"
4260	printf "\n ${pathout[$i]}"
4261	printf "\n File will be copied to archive-system ($archive_system) !\n"
4262	else
4263	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4264	printf "\n ${pathout[$i]}"
4265	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4266	fi
4267	mv ${localout[$i]} ${frelout[$i]}
4268
4269	file_saved=false
4270
4271	if [[ $archive_system = asterix ]]
4272	then
4273	do_stageout=true
4274	(( stageout_anz = 0 ))
4275	while [[ $do_stageout = true ]]
4276	do
4277	if [[ $files_for_pes = false ]]
4278	then
4279	stageout ${frelout[$i]} > STAGE_OUTPUT
4280	else
4281	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4282	fi
4283	cat STAGE_OUTPUT
4284	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4285	then
4286	file_saved=true
4287	do_stageout=false
4288	else
4289	if [[ $files_for_pes = false ]]
4290	then
4291	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4292	else
4293	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4294	fi
4295	(( stageout_anz = stageout_anz + 1 ))
4296	if (( stageout_anz == 10 ))
4297	then
4298	printf "\n +++ stoped after 10 unsuccessful tries!"
4299	archive_save=false
4300	do_stageout=false
4301	else
4302	printf "\n *** new try to store on archive after 15 min:"
4303	sleep 900
4304	fi
4305	fi
4306	done
4307	elif [[ $archive_system = DMF ]]
4308	then
4309	if [[ $files_for_pes = false ]]
4310	then
4311	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4312	locat=DMF
4313	exit
4314	else
4315	rm -rf $ARCHIVE/${frelout[$i]}
4316	cp -r ${frelout[$i]} $ARCHIVE
4317	fi
4318	file_saved=true
4319	elif [[ $archive_system = tivoli ]]
4320	then
4321	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4322	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4323	# GELEGT WERDEN
4324	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4325	chmod g+rx $tmp_data_catalog
4326	if [[ $files_for_pes = false ]]
4327	then
4328	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4329	else
4330	mkdir $tmp_data_catalog/${frelout[$i]}
4331	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4332	fi
4333
4334	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4335	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4336	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4337	if [[ $files_for_pes = false ]]
4338	then
4339	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4340	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4341	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4342	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4343	else
4344	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4345	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4346	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4347	fi
4348
4349	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4350	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4351	file_saved=true
4352
4353	elif [[ $archive_system = ut ]]
4354	then
4355	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4356	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4357	# GELEGT WERDEN
4358	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4359	chmod g+rx $tmp_data_catalog
4360	if [[ $files_for_pes = false ]]
4361	then
4362	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4363	else
4364	mkdir $tmp_data_catalog/${frelout[$i]}
4365	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4366	fi
4367
4368	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4369	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4370	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4371	if [[ $files_for_pes = false ]]
4372	then
4373	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4374	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4375	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4376	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4377	else
4378	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4379	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4380	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4381	fi
4382
4383	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4384	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4385	file_saved=true
4386
4387	else
4388	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4389	archive_save=false
4390	fi
4391	if [[ $file_saved = true ]]
4392	then
4393	if [[ $files_for_pes = false ]]
4394	then
4395	cat /dev/null > ${pathout[$i]}
4396	else
4397	mkdir -p ${pathout[$i]}
4398	fi
4399	fi
4400	fi
4401
4402	# APPEND AUF LOKALER MASCHINE
4403	if [[ "${actionout[$i]}" = "a" ]]
4404	then
4405	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4406	then
4407	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4408	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4409	else
4410	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4411	cat ${localout[$i]} >> ${pathout[$i]}
4412	fi
4413	fi
4414
4415	# KOPIEREN AUF LOKALER MASCHINE
4416	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4417	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4418	then
4419
4420	# KOPIEREN AUF EINPROZESSORMASCHINE
4421	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4422	then
4423	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4424	if [[ $link_local_output = true ]]
4425	then
4426	printf " using ln -f\n"
4427	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4428	fi
4429	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4430	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4431	then
4432	if [[ $link_local_output = true ]]
4433	then
4434	printf " ln failed, using cp...\n"
4435	fi
4436	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4437	fi
4438	else
4439	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4440	if [[ $link_local_output = true ]]
4441	then
4442	printf " using ln -f\n"
4443	ln -f ${localout[$i]} ${pathout[$i]}
4444	fi
4445	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4446	if [[ ! -f "${pathout[$i]}" ]]
4447	then
4448	if [[ $link_local_output = true ]]
4449	then
4450	printf " ln failed, using cp...\n"
4451	fi
4452	cp ${localout[$i]} ${pathout[$i]}
4453	fi
4454	fi
4455
4456	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4457	then
4458
4459	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4460	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4461	# WIRD DANN KOPIERT
4462	# PER MOVE UMBENANNT WERDEN
4463	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4464	if [[ $link_local_output = true ]]
4465	then
4466	printf " using ln -f\n"
4467	mkdir ${pathout[$i]}
4468	cd ${localout[$i]}
4469	for file in $(ls *)
4470	do
4471	ln -f $file ${pathout[$i]}
4472	done
4473	cd $TEMPDIR
4474	fi
4475	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4476	if [[ ! -f "${pathout[$i]}/_0000" ]]
4477	then
4478	if [[ $link_local_output = true ]]
4479	then
4480	printf " ln failed for .../_0000, using cp...\n"
4481	fi
4482	cp -r ${localout[$i]} ${pathout[$i]}
4483	fi
4484
4485	fi
4486	fi
4487	done
4488	if (( i != 0 ))
4489	then
4490	if [[ $transfer_problems = true ]]
4491	then
4492	printf "\n$striche\n *** OUTPUT-files saved"
4493	printf "\n +++ WARNING: some data transfers failed! \n"
4494	else
4495	printf "\n$striche\n *** all OUTPUT-files saved \n"
4496	fi
4497	fi
4498
4499
4500	# EVENTUELL FOLGEJOB STARTEN
4501	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4502	if [[ -f CONTINUE_RUN ]]
4503	then
4504
4505	if [[ $archive_save = true ]]
4506	then
4507
4508	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4509	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4510	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4511	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4512	# HANDEN
4513	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4514	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4515	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4516	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4517	then
4518	mc=`echo $mc \| sed 's/#/f/g'`
4519	fi
4520
4521
4522	# JOB STARTEN
4523	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4524	echo " $mc"
4525	printf "\n$striche\n"
4526	if [[ $localhost != $fromhost ]]
4527	then
4528
4529	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4530	then
4531	echo "*** ssh will be used to initiate restart-runs!"
4532	echo " return_addres=\"$return_addres\" "
4533	echo " return_username=\"$return_username\" "
4534	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4535	then
4536	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4537	else
4538	if [[ $localhost = ibmkisti ]]
4539	then
4540	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4541	else
4542	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4543	fi
4544	fi
4545	else
4546	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4547	locat=restart; exit
4548	fi
4549
4550	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4551	# DER AKTUELLE JOB ENDET
4552	if [[ $queue = special1q ]]
4553	then
4554	sleep 120
4555	else
4556	sleep 30
4557	fi
4558
4559	else
4560
4561	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4562	# RUFEN WERDEN, AUSSER AUF lcfimm
4563	cd $LOCAL_PWD
4564	if [[ $localhost = lcfimm ]]
4565	then
4566	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4567	else
4568	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4569	fi
4570	cd - > /dev/null
4571	fi
4572	printf "\n$striche\n *** restart-run initiated \n"
4573
4574
4575	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4576	# GEHOLT WORDEN SIND, LOESCHEN
4577	(( i = 0 ))
4578	while (( i < iin ))
4579	do
4580	(( i = i + 1 ))
4581	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4582	then
4583	rm -r $tmp_data_catalog/${frelin[$i]}
4584	fi
4585	done
4586
4587	else
4588
4589	printf "\n +++ no restart-run possible, since errors occured"
4590	printf "\n during the archive process"
4591	fi
4592
4593	fi
4594
4595
4596
4597	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4598	if [[ "$email_notification" != "none" ]]
4599	then
4600
4601	if [[ $localhost != $fromhost ]]
4602	then
4603	if [[ -f CONTINUE_RUN ]]
4604	then
4605	echo "PALM restart run necessary" > email_text
4606	echo "description header of actual run:" >> email_text
4607	cat CONTINUE_RUN >> email_text
4608	echo "mrun-command to restart:" >> email_text
4609	echo "$mc" >> email_text
4610	else
4611	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4612	fi
4613	mail $email_notification < email_text
4614	printf "\n *** email notification sent to \"$email_notification\" "
4615	fi
4616	fi
4617
4618
4619
4620	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4621	cd $HOME
4622	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4623
4624	else
4625
4626
4627	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4628	# CHENDE AKTIONEN DURCHGEFUEHRT
4629
4630	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4631	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4632	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4633	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4634	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4635	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4636	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4637	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4638	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4639	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4640	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4641	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4642	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4643	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4644	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4645	if [[ $use_openmp = true ]]
4646	then
4647	mrun_com=${mrun_com}" -O $threads_per_task"
4648	fi
4649	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4650	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4651	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4652	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4653	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4654	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4655	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4656	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4657	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4658	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4659	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4660	if [[ $do_remote = true ]]
4661	then
4662	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4663	fi
4664
4665
4666	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4667	jobfile=jobfile.$RANDOM
4668
4669
4670	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4671	echo "mkdir $TEMPDIR" >> $jobfile
4672	echo "cd $TEMPDIR" >> $jobfile
4673
4674
4675	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4676	if [[ $do_trace = true ]]
4677	then
4678	echo "set -x" >> $jobfile
4679	else
4680	echo "set +vx" >> $jobfile
4681	fi
4682
4683
4684	# initialize the environment and load modules
4685	if [[ "$init_cmds" != "" ]]
4686	then
4687	echo "$init_cmds" >> $jobfile
4688	fi
4689	if [[ "$module_calls" != "" ]]
4690	then
4691	echo "$module_calls" >> $jobfile
4692	fi
4693
4694
4695	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4696	# DATEI FUER DEN JOB
4697	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4698	then
4699
4700	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4701	# KOPIEREN
4702	if [[ $restart_run != true ]]
4703	then
4704	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4705	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4706	fi
4707
4708	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4709	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4710	echo "set -x" >> $jobfile
4711	if [[ $host = $localhost ]]
4712	then
4713	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4714	else
4715	if [[ $host != ibmkisti ]]
4716	then
4717	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4718	else
4719	# on KISTI's IBM firewall is only opened on interactive node
4720	echo "localdir=\`pwd\`" >> $jobfile
4721	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4722	fi
4723	fi
4724	echo "export SOURCES_COMPLETE=true" >> $jobfile
4725
4726	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4727	# ARBEITSVERZEICHNIS VERSCHIEBEN
4728	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4729	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4730	echo "execute_mrun=true" >> $jobfile
4731	echo " " >> $jobfile
4732
4733	else
4734
4735	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4736	# SOWIE GEGEBENENFALLS DES MAKEFILES
4737	if [[ $do_compile = true ]]
4738	then
4739
4740	source_catalog=SOURCES_FOR_RUN_$fname
4741
4742	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4743	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4744	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4745	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4746	echo "export SOURCES_COMPLETE=true" >> $jobfile
4747	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4748
4749	for filename in $source_list
4750	do
4751	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4752	echo "cat > $filename << \"%END%\"" >> $jobfile
4753	cat $source_catalog/$filename >> $jobfile
4754	echo " " >> $jobfile
4755	echo "%END%" >> $jobfile
4756	echo " " >> $jobfile
4757	done
4758
4759	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4760	echo "cat > Makefile << \"%END%\"" >> $jobfile
4761	cat $source_catalog/Makefile >> $jobfile
4762	echo " " >> $jobfile
4763	echo "%END%" >> $jobfile
4764	echo " " >> $jobfile
4765
4766	echo "cd - > /dev/null" >> $jobfile
4767
4768	fi
4769
4770
4771	# ABSPEICHERN DER KONFIGURATIONSDATEI
4772	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4773	echo "cat > $config_file << \"%END%\"" >> $jobfile
4774	cat $config_file >> $jobfile
4775	echo "%END%" >> $jobfile
4776	echo " " >> $jobfile
4777
4778
4779	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4780	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4781	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4782	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4783	echo "%END%" >> $jobfile
4784	echo "chmod u+x $mrun_script_name" >> $jobfile
4785	echo "execute_mrun=true" >> $jobfile
4786	echo " " >> $jobfile
4787
4788	fi
4789
4790
4791	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4792	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4793	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4794	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4795	if [[ $do_remote = true ]]
4796	then
4797	(( i = 0 ))
4798	while (( i < iin ))
4799	do
4800	(( i = i + 1 ))
4801	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4802	if [[ "${transin[$i]}" = job ]]
4803	then
4804	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4805	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4806	echo " " >> $jobfile
4807	echo "%END%" >> $jobfile
4808	else
4809	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4810	fi
4811
4812	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4813	echo "if [[ \$? = 1 ]]" >> $jobfile
4814	echo "then" >> $jobfile
4815	echo " echo \" \" " >> $jobfile
4816	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4817	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4818	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4819	echo " execute_mrun=false" >> $jobfile
4820	echo "fi" >> $jobfile
4821	done
4822	fi
4823
4824	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4825	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4826	echo "LOCAL_PWD=$working_directory" >> $jobfile
4827	echo "export LOCAL_PWD" >> $jobfile
4828
4829	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4830	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4831	echo "export LOCAL_MRUN_PATH" >> $jobfile
4832
4833	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4834	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4835	then
4836	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4837	fi
4838
4839	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4840	echo "set -x" >> $jobfile
4841	echo "queue=$queue" >> $jobfile
4842	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4843
4844	echo 'ls -al; echo `pwd`' >> $jobfile
4845	echo "cd \$HOME" >> $jobfile
4846	echo "rm -rf $TEMPDIR" >> $jobfile
4847
4848
4849
4850
4851	# JOB PER SUBJOB STARTEN
4852	if [[ $silent = false ]]
4853	then
4854	printf "\n "
4855	else
4856	printf "\n\n"
4857	fi
4858
4859	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4860	rm -rf $jobfile
4861
4862
4863	fi # ENDE REMOTE-TEIL
4864
4865
4866
4867	# ENDE DER PROZEDUR

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