| 1 | #$Id: .mrun.config.forwind 1202 2013-07-10 16:22:07Z witha $ |
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| 2 | #column 1 column 2 column 3 |
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| 3 | #name of variable value of variable (~ must not be used) scope |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %mainprog palm.f90 |
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| 6 | %base_directory $HOME/palm/current_version |
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| 7 | %base_data ~/palm/current_version/JOBS |
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| 8 | ################################################################################ |
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| 9 | # Replace <<REPLACE BY YOUR USERNAME> by your username on FLOW. Replace "/fw/" |
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| 10 | # by "/iwes/" if your user directory resides in /iwes/. |
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| 11 | ################################################################################ |
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| 12 | %output_data /data/work/gpfs/fw/<REPLACE BY YOUR USERNAME>/palm/current_version/JOBS |
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| 13 | %source_path $base_directory/trunk/SOURCE |
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| 14 | %add_source_path $base_directory/USER_CODE/$fname |
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| 15 | %depository_path $base_directory/MAKE_DEPOSITORY |
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| 16 | %use_makefile true |
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| 17 | # |
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| 18 | # |
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| 19 | %host_identifier flow* lcflow |
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| 20 | %host_identifier cfdl* lcflow |
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| 21 | %host_identifier cfdh* lcflow |
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| 22 | %host_identifier cfdx* lcflow |
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| 23 | |
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| 24 | ################################################################################ |
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| 25 | # Replace <YOUR_DESKTOP_HOSTNAME> by the hostname of your desktop |
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| 26 | # an uncomment following line to enable job submission from you local desktop |
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| 27 | ################################################################################ |
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| 28 | #%host_identifier <YOUR_DESKTOP_HOSTNAME> lcfor |
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| 29 | |
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| 30 | ################################################################################ |
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| 31 | # Configuration for Ubuntu Linux 12.04 LTS with gcc (4.6.3) and OpenMPI (1.4.3) |
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| 32 | # |
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| 33 | # The next block contains all informations for compiling the PALM code |
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| 34 | # and for generating and running the PALM executable using MPI on a Linux machine |
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| 35 | # with gcc and OpenMPI. Replace <LOCAL_USERNAME> with your username on your |
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| 36 | # local machine |
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| 37 | # |
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| 38 | # NOTE: - Other hosts may require different settings. |
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| 39 | # - following packages are required: |
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| 40 | # openmpi-common, libopenmpi-dev, libopenmpi, libnetcdf, libnetcdf-dev, |
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| 41 | # gcc |
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| 42 | # - depending on where you installed netcdf, you may have to adjust the paths |
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| 43 | # given in %netcdf_inc and %netcdf_lib |
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| 44 | # |
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| 45 | ################################################################################ |
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| 46 | %remote_username <LOCAL_USERNAME> lcfor parallel |
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| 47 | %tmp_user_catalog /tmp lcfor parallel |
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| 48 | %tmp_data_catalog /tmp lcfor parallel |
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| 49 | %compiler_name mpif90 lcfor parallel |
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| 50 | %compiler_name_ser gfortran lcfor parallel |
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| 51 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel lcfor parallel |
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| 52 | %netcdf_inc -I/usr/include lcfor parallel |
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| 53 | %netcdf_lib -L/usr/lib:-lnetcdff:-lnetcdf lcfor parallel |
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| 54 | %mopts -j:4 lcfor parallel |
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| 55 | %fopts -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash:-fconvert=little-endian lcfor parallel |
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| 56 | %lopts -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash lcfor parallel |
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| 57 | |
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| 58 | ################################################################################ |
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| 59 | # Configuration for FLOW |
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| 60 | # |
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| 61 | # The next block contains all informations for compiling the PALM code |
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| 62 | # and for generating and running the PALM executable using MPI. Replace <USERNAME_FLOW> |
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| 63 | # with your username on FLOW and if necessary "/fw/" by "/iwes/". |
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| 64 | # The following 'lcflow parallel' block assumes PALM compilation and execution |
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| 65 | # on host flow. Please note that other hosts may require different settings. |
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| 66 | ################################################################################ |
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| 67 | %remote_username <USERNAME_FLOW> lcflow parallel |
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| 68 | %tmp_user_catalog /data/work/gpfs/fw/$remote_username/tmp lcflow parallel |
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| 69 | %tmp_data_catalog /data/work/gpfs/fw/$remote_username/palm_restart_data lcflow parallel |
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| 70 | %compiler_name mpiifort lcflow parallel |
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| 71 | %compiler_name_ser ifort lcflow parallel |
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| 72 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel lcflow parallel |
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| 73 | %netcdf_inc -I/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/include lcflow parallel |
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| 74 | %netcdf_lib -L/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib:-lnetcdff:-L/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-lnetcdf:-L/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib lcflow parallel |
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| 75 | %mopts -j:8 lcflow parallel |
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| 76 | %fopts -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-static-intel lcflow parallel |
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| 77 | %lopts -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-static-intel:-Wl,-rpath:/cm/shared/apps/intel/ics-2011.0.013/composerxe-2011.0.084/compiler/lib/intel64 lcflow parallel |
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| 78 | %login_init_cmd .:/etc/bashrc lcflow parallel |
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| 79 | %modules sge/6.2u5p2:netcdf/4.2.1.1/intel/64/2011.0.013:netcdf-fortran/4.2/intel/64/2011.0.013:intel/ics/64/2011.0.013:intel/impi/64/4.1.0.024:hdf5/1.8.9/intel/64/2011.0.013:qt4 lcflow parallel |
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| 80 | %disc_space 50 lcflow parallel |
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| 81 | # |
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| 82 | # |
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| 83 | %write_binary true restart |
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| 84 | # |
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| 85 | #---------------------------------------------------------------------------- |
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| 86 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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| 87 | #---------------------------------------------------------------------------- |
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| 88 | #IC: |
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| 89 | # |
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| 90 | #---------------------------------------------------------------------------- |
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| 91 | # ERROR-commands - executed when program terminates abnormally |
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| 92 | #---------------------------------------------------------------------------- |
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| 93 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 94 | EC:pwd; ls -al |
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| 95 | # |
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| 96 | #---------------------------------------------------------------------------- |
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| 97 | # OUTPUT-commands - executed when program terminates normally |
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| 98 | #---------------------------------------------------------------------------- |
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| 99 | # |
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| 100 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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| 101 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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| 102 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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| 103 | # |
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| 104 | # Combine all particle information files |
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| 105 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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| 106 | # |
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| 107 | #---------------------------------------------------------------------------- |
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| 108 | # List of input-files |
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| 109 | #---------------------------------------------------------------------------- |
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| 110 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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| 111 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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| 112 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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| 113 | BININ in:loc:flpe d3f:rec $base_data/$fname/RESTART _d3d |
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| 114 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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| 115 | DATA_1D_PR_NETCDF in:locopt prf $output_data/$fname/OUTPUT _pr nc |
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| 116 | DATA_1D_SP_NETCDF in:locopt spf $output_data/$fname/OUTPUT _sp nc |
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| 117 | DATA_1D_TS_NETCDF in:locopt tsf $output_data/$fname/OUTPUT _ts nc |
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| 118 | DATA_1D_PTS_NETCDF in:locopt ptsf $output_data/$fname/OUTPUT _pts nc |
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| 119 | DATA_2D_XY_NETCDF in:locopt xyf $output_data/$fname/OUTPUT _xy nc |
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| 120 | DATA_2D_XY_AV_NETCDF in:locopt xyf $output_data/$fname/OUTPUT _xy_av nc |
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| 121 | DATA_2D_XZ_NETCDF in:locopt xzf $output_data/$fname/OUTPUT _xz nc |
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| 122 | DATA_2D_XZ_AV_NETCDF in:locopt xzf $output_data/$fname/OUTPUT _xz_av nc |
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| 123 | DATA_2D_YZ_NETCDF in:locopt yzf $output_data/$fname/OUTPUT _yz nc |
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| 124 | DATA_2D_YZ_AV_NETCDF in:locopt yzf $output_data/$fname/OUTPUT _yz_av nc |
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| 125 | DATA_3D_NETCDF in:locopt 3df $output_data/$fname/OUTPUT _3d nc |
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| 126 | DATA_3D_AV_NETCDF in:locopt 3df $output_data/$fname/OUTPUT _3d_av nc |
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| 127 | DATA_PRT_NETCDF in:locopt:pe prtf $output_data/$fname/OUTPUT _prt nc |
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| 128 | # |
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| 129 | #---------------------------------------------------------------------------- |
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| 130 | # List of output-files |
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| 131 | #---------------------------------------------------------------------------- |
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| 132 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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| 133 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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| 134 | # |
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| 135 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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| 136 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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| 137 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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| 138 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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| 139 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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| 140 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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| 141 | # |
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| 142 | DATA_1D_PR_NETCDF out:loc pr# $output_data/$fname/OUTPUT _pr nc |
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| 143 | DATA_1D_PR_NETCDF out:loc prf $output_data/$fname/OUTPUT _pr nc |
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| 144 | DATA_1D_SP_NETCDF out:loc sp# $output_data/$fname/OUTPUT _sp nc |
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| 145 | DATA_1D_SP_NETCDF out:loc spf $output_data/$fname/OUTPUT _sp nc |
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| 146 | DATA_1D_TS_NETCDF out:loc ts# $output_data/$fname/OUTPUT _ts nc |
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| 147 | DATA_1D_TS_NETCDF out:loc tsf $output_data/$fname/OUTPUT _ts nc |
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| 148 | DATA_1D_PTS_NETCDF out:loc pts# $output_data/$fname/OUTPUT _pts nc |
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| 149 | DATA_1D_PTS_NETCDF out:loc ptsf $output_data/$fname/OUTPUT _pts nc |
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| 150 | DATA_2D_XY_NETCDF out:loc xy#:xyf $output_data/$fname/OUTPUT _xy nc |
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| 151 | DATA_2D_XY_AV_NETCDF out:loc xy#:xyf $output_data/$fname/OUTPUT _xy_av nc |
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| 152 | DATA_2D_XZ_NETCDF out:loc xz#:xzf $output_data/$fname/OUTPUT _xz nc |
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| 153 | DATA_2D_XZ_AV_NETCDF out:loc xz#:xzf $output_data/$fname/OUTPUT _xz_av nc |
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| 154 | DATA_2D_YZ_NETCDF out:loc yz#:yzf $output_data/$fname/OUTPUT _yz nc |
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| 155 | DATA_2D_YZ_AV_NETCDF out:loc yz#:yzf $output_data/$fname/OUTPUT _yz_av nc |
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| 156 | DATA_3D_NETCDF out:loc 3d#:3df $output_data/$fname/OUTPUT _3d nc |
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| 157 | DATA_3D_AV_NETCDF out:loc 3d#:3df $output_data/$fname/OUTPUT _3d_av nc |
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| 158 | DATA_MASK_01_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m01 nc |
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| 159 | DATA_MASK_01_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m01_av nc |
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| 160 | DATA_MASK_02_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m02 nc |
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| 161 | DATA_MASK_02_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m02_av nc |
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| 162 | DATA_MASK_03_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m03 nc |
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| 163 | DATA_MASK_03_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m03_av nc |
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| 164 | DATA_MASK_04_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m04 nc |
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| 165 | DATA_MASK_04_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m04_av nc |
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| 166 | DATA_MASK_05_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m05 nc |
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| 167 | DATA_MASK_05_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m05_av nc |
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| 168 | DATA_MASK_06_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m06 nc |
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| 169 | DATA_MASK_06_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m06_av nc |
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| 170 | DATA_MASK_07_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m07 nc |
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| 171 | DATA_MASK_07_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m07_av nc |
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| 172 | DATA_MASK_08_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m08 nc |
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| 173 | DATA_MASK_08_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m08_av nc |
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| 174 | DATA_MASK_09_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m09 nc |
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| 175 | DATA_MASK_09_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m09_av nc |
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| 176 | DATA_MASK_10_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m10 nc |
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| 177 | DATA_MASK_10_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m10_av nc |
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| 178 | DATA_MASK_11_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m11 nc |
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| 179 | DATA_MASK_11_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m11_av nc |
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| 180 | DATA_MASK_12_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m12 nc |
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| 181 | DATA_MASK_12_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m12_av nc |
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| 182 | DATA_MASK_13_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m13 nc |
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| 183 | DATA_MASK_13_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m13_av nc |
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| 184 | DATA_MASK_14_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m14 nc |
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| 185 | DATA_MASK_14_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m14_av nc |
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| 186 | DATA_MASK_15_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m15 nc |
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| 187 | DATA_MASK_15_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m15_av nc |
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| 188 | DATA_MASK_16_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m16 nc |
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| 189 | DATA_MASK_16_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m16_av nc |
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| 190 | DATA_MASK_17_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m17 nc |
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| 191 | DATA_MASK_17_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m17_av nc |
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| 192 | DATA_MASK_18_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m18 nc |
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| 193 | DATA_MASK_18_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m18_av nc |
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| 194 | DATA_MASK_19_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m19 nc |
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| 195 | DATA_MASK_19_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m19_av nc |
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| 196 | DATA_MASK_20_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m20 nc |
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| 197 | DATA_MASK_20_AV_NETCDF out:loc ma#:maf $output_data/$fname/OUTPUT _m20_av nc |
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| 198 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $output_data/$fname/OUTPUT _prt nc |
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| 199 | DATA_DVR out:loc:pe dvr $output_data/$fname/OUTPUT _dvr |
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| 200 | # |
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| 201 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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| 202 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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| 203 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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| 204 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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| 205 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
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| 206 | # A BLANK LINE MUST FOLLOW |
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