source: palm/trunk/SCRIPTS/.mrun.config.forwind @ 1110

Last change on this file since 1110 was 1099, checked in by raasch, 9 years ago

adjustments for Forwind cluster (lcflow) and Kuyshu University computing center (hayaka -lckyuh); further small adjustments for lckyut

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1#$Id: .mrun.config.forwind 1099 2013-02-10 01:47:43Z maronga $
2#column 1          column 2                                   column 3
3#name of variable  value of variable (~ must not be used)     scope
4#----------------------------------------------------------------------------
5%mainprog          palm.f90
6%base_directory    $HOME/palm/current_version
7%base_data         ~/palm/current_version/jobs
8################################################################################
9# Replace <<REPLACE BY YOUR USERNAME> by your username on FLOW. Replace "/fw/"
10# by "/iwes/" if your user directory resides in /iwes/.
11################################################################################
12%output_data       /data/work/fw/<REPLACE BY YOUR USERNAME>/palm/current_version/JOBS
13%source_path       $base_directory/trunk/SOURCE
14%add_source_path   $base_directory/user_code/$fname
15%depository_path   $base_directory/make_depository
16%use_makefile      true
17#
18#
19%host_identifier       flow*            lcflow
20%host_identifier       cfdl*            lcflow
21%host_identifier       cfdh*            lcflow
22%host_identifier       cfdx*            lcflow
23
24################################################################################
25# Replace <YOUR_DESKTOP_HOSTNAME> by the hostname of your desktop
26# an uncomment following line to enable job submission from you local desktop
27################################################################################
28#%host_identifier       <YOUR_DESKTOP_HOSTNAME>           lcfor
29
30################################################################################
31# Configuration for Ubuntu Linux 12.04 LTS with gcc (4.6.3) and OpenMPI (1.4.3)
32#
33# The next block contains all informations for compiling the PALM code
34# and for generating and running the PALM executable using MPI on a Linux machine
35# with gcc and OpenMPI. Replace <LOCAL_USERNAME> with your username on your
36# local machine
37#
38# NOTE: - Other hosts may require different settings.
39#       - following packages are required:
40#         openmpi-common, libopenmpi-dev, libopenmpi, libnetcdf, libnetcdf-dev,
41#         gcc
42#
43################################################################################
44%remote_username   <LOCAL_USERNAME>                                          lcfor parallel
45%tmp_user_catalog  /tmp                                                      lcfor parallel
46%tmp_data_catalog  /tmp                                                      lcfor parallel
47%compiler_name     mpif90                                                    lcfor parallel
48%compiler_name_ser gfortran                                                  lcfor parallel
49%cpp_options       -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel  lcfor parallel
50%netcdf_inc        -I/opt/netcdf/4.2.1.1/include                             lcfor parallel
51%netcdf_lib        -lnetcdff:-lnetcdf                                        lcfor parallel
52%mopts             -j:4                                                      lcfor parallel
53%fopts             -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash:-fconvert=little-endian   lcfor parallel
54%lopts             -Ofast:-IPA:-mtune=native:-march=native:-cpp:-fdefault-real-8:-fbackslash                           lcfor parallel
55
56################################################################################
57# Configuration for FLOW
58#
59# The next block contains all informations for compiling the PALM code
60# and for generating and running the PALM executable using MPI. Replace <USERNAME_FLOW>
61# with your username on FLOW and if necessary "/fw/" by "/iwes/".
62# The following 'lcflow parallel' block assumes PALM compilation and execution
63# on host flow. Please note that other hosts may require different settings.
64################################################################################
65%remote_username   <USERNAME_FLOW>                                                                                               lcflow parallel
66%tmp_user_catalog  /data/work/fw/$remote_username/tmp                                                                            lcflow parallel
67%tmp_data_catalog  /data/work/fw/$remote_username/palm_restart_data                                                              lcflow parallel
68%compiler_name     mpiifort                                                                                                      lcflow parallel
69%compiler_name_ser ifort                                                                                                         lcflow parallel
70%cpp_options       -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__lc:-D__netcdf:-D__netcdf4:-D__parallel  lcflow parallel
71%netcdf_inc        -I/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/include                                              lcflow parallel
72%netcdf_lib        -L/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib:-lnetcdff:-L/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-lnetcdf:-L/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/hdf5/1.8.9/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf/4.2.1.1/intel/64/2011.0.013/lib:-Wl,-rpath:/cm/shared/apps/netcdf-fortran/4.2/intel/64/2011.0.013/lib       lcflow parallel
73%mopts             -j:8                                                                                                          lcflow parallel
74%fopts             -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-convert:little_endian:-static-intel   lcflow parallel
75%lopts             -xhost:-O3:-fpp:-r8:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-sqrt:-ip:-nbs:-static-intel:-Wl,-rpath:/cm/shared/apps/intel/ics-2011.0.013/composerxe-2011.0.084/compiler/lib/intel64          lcflow parallel
76%login_init_cmd    .:/cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash\;:MODULEPATH=/cm/shared/modulefiles/                     lcflow parallel
77%modules           sge/6.2u5p2:netcdf/4.2.1.1/intel/64/2011.0.013:netcdf-fortran/4.2/intel/64/2011.0.013:intel/ics/64/2011.0.013:intel/impi/64/4.0.1.007:hdf5/1.8.9/intel/64/2011.0.013:qt4     lcflow parallel
78%disc_space        50                                                                                                            lcflow parallel
79#
80#
81%write_binary                true                             restart
82#
83#----------------------------------------------------------------------------
84# INPUT-commands, executed before running PALM - lines must start with "IC:"
85#----------------------------------------------------------------------------
86#IC:
87#
88#----------------------------------------------------------------------------
89# ERROR-commands - executed when program terminates abnormally
90#----------------------------------------------------------------------------
91EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
92EC:pwd; ls -al
93#
94#----------------------------------------------------------------------------
95# OUTPUT-commands - executed when program terminates normally
96#----------------------------------------------------------------------------
97#
98# Combine 1D- and 3D-profile output (these files are not usable for plotting)
99OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
100OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
101#
102# Combine all particle information files
103OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
104#
105#----------------------------------------------------------------------------
106# List of input-files
107#----------------------------------------------------------------------------
108PARIN                    in:job        d3#      $base_data/$fname/INPUT    _p3d
109PARIN                    in:job        d3f      $base_data/$fname/INPUT    _p3df
110TOPOGRAPHY_DATA          in:locopt     d3#:d3f  $base_data/$fname/INPUT    _topo
111BININ                    in:loc:flpe   d3f:rec  $base_data/$fname/RESTART  _d3d
112PARTICLE_RESTART_DATA_IN in:loc:flpe   prtf     $base_data/$fname/RESTART  _rprt
113DATA_1D_PR_NETCDF        in:locopt     prf      $output_data/$fname/OUTPUT   _pr     nc
114DATA_1D_SP_NETCDF        in:locopt     spf      $output_data/$fname/OUTPUT   _sp     nc
115DATA_1D_TS_NETCDF        in:locopt     tsf      $output_data/$fname/OUTPUT   _ts     nc
116DATA_1D_PTS_NETCDF       in:locopt     ptsf     $output_data/$fname/OUTPUT   _pts    nc
117DATA_2D_XY_NETCDF        in:locopt     xyf      $output_data/$fname/OUTPUT   _xy     nc
118DATA_2D_XY_AV_NETCDF     in:locopt     xyf      $output_data/$fname/OUTPUT   _xy_av  nc
119DATA_2D_XZ_NETCDF        in:locopt     xzf      $output_data/$fname/OUTPUT   _xz     nc
120DATA_2D_XZ_AV_NETCDF     in:locopt     xzf      $output_data/$fname/OUTPUT   _xz_av  nc
121DATA_2D_YZ_NETCDF        in:locopt     yzf      $output_data/$fname/OUTPUT   _yz     nc
122DATA_3D_NETCDF           in:locopt     3df      $output_data/$fname/OUTPUT   _3d     nc
123DATA_3D_AV_NETCDF        in:locopt     3df      $output_data/$fname/OUTPUT   _3d_av  nc
124DATA_PRT_NETCDF          in:locopt:pe  prtf     $output_data/$fname/OUTPUT   _prt
125#
126#----------------------------------------------------------------------------
127# List of output-files
128#----------------------------------------------------------------------------
129BINOUT                    out:loc:flpe restart   $base_data/$fname/RESTART  _d3d
130PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART  _rprt
131#
132RUN_CONTROL       out:loc:   d3#     $base_data/$fname/MONITORING  _rc
133RUN_CONTROL       out:loc:a  d3f     $base_data/$fname/MONITORING  _rc
134HEADER            out:loc:   d3#     $base_data/$fname/MONITORING  _header
135HEADER            out:loc:a  d3f     $base_data/$fname/MONITORING  _header
136CPU_MEASURES      out:loc:   d3#     $base_data/$fname/MONITORING  _cpu
137CPU_MEASURES      out:loc:a  d3f     $base_data/$fname/MONITORING  _cpu
138#
139DATA_1D_PR_NETCDF      out:loc    pr#       $output_data/$fname/OUTPUT  _pr     nc
140DATA_1D_PR_NETCDF      out:loc    prf       $output_data/$fname/OUTPUT  _pr     nc
141DATA_1D_SP_NETCDF      out:loc    sp#       $output_data/$fname/OUTPUT  _sp     nc
142DATA_1D_SP_NETCDF      out:loc    spf       $output_data/$fname/OUTPUT  _sp     nc
143DATA_1D_TS_NETCDF      out:loc    ts#       $output_data/$fname/OUTPUT  _ts     nc
144DATA_1D_TS_NETCDF      out:loc    tsf       $output_data/$fname/OUTPUT  _ts     nc
145DATA_1D_PTS_NETCDF     out:loc    pts#      $output_data/$fname/OUTPUT  _pts    nc
146DATA_1D_PTS_NETCDF     out:loc    ptsf      $output_data/$fname/OUTPUT  _pts    nc
147DATA_2D_XY_NETCDF      out:loc    xy#:xyf   $output_data/$fname/OUTPUT  _xy     nc
148DATA_2D_XY_AV_NETCDF   out:loc    xy#:xyf   $output_data/$fname/OUTPUT  _xy_av  nc
149DATA_2D_XZ_NETCDF      out:loc    xz#:xzf   $output_data/$fname/OUTPUT  _xz     nc
150DATA_2D_XZ_AV_NETCDF   out:loc    xz#:xzf   $output_data/$fname/OUTPUT  _xz_av  nc
151DATA_2D_YZ_NETCDF      out:loc    yz#:yzf   $output_data/$fname/OUTPUT  _yz     nc
152DATA_2D_YZ_AV_NETCDF   out:loc    yz#:yzf   $output_data/$fname/OUTPUT  _yz_av  nc
153DATA_3D_NETCDF         out:loc    3d#:3df   $output_data/$fname/OUTPUT  _3d     nc
154DATA_3D_AV_NETCDF      out:loc    3d#:3df   $output_data/$fname/OUTPUT  _3d_av  nc
155DATA_MASK_01_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m01     nc
156DATA_MASK_01_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m01_av  nc
157DATA_MASK_02_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m02     nc
158DATA_MASK_02_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m02_av  nc
159DATA_MASK_03_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m03     nc
160DATA_MASK_03_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m03_av  nc
161DATA_MASK_04_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m04     nc
162DATA_MASK_04_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m04_av  nc
163DATA_MASK_05_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m05     nc
164DATA_MASK_05_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m05_av  nc
165DATA_MASK_06_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m06     nc
166DATA_MASK_06_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m06_av  nc
167DATA_MASK_07_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m07     nc
168DATA_MASK_07_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m07_av  nc
169DATA_MASK_08_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m08     nc
170DATA_MASK_08_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m08_av  nc
171DATA_MASK_09_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m09     nc
172DATA_MASK_09_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m09_av  nc
173DATA_MASK_10_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m10     nc
174DATA_MASK_10_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m10_av  nc
175DATA_MASK_11_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m11     nc
176DATA_MASK_11_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m11_av  nc
177DATA_MASK_12_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m12     nc
178DATA_MASK_12_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m12_av  nc
179DATA_MASK_13_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m13     nc
180DATA_MASK_13_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m13_av  nc
181DATA_MASK_14_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m14     nc
182DATA_MASK_14_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m14_av  nc
183DATA_MASK_15_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m15     nc
184DATA_MASK_15_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m15_av  nc
185DATA_MASK_16_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m16     nc
186DATA_MASK_16_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m16_av  nc
187DATA_MASK_17_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m17     nc
188DATA_MASK_17_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m17_av  nc
189DATA_MASK_18_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m18     nc
190DATA_MASK_18_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m18_av  nc
191DATA_MASK_19_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m19     nc
192DATA_MASK_19_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m19_av  nc
193DATA_MASK_20_NETCDF    out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m20     nc
194DATA_MASK_20_AV_NETCDF out:loc    ma#:maf   $output_data/$fname/OUTPUT  _m20_av  nc
195DATA_PRT_NETCDF        out:loc:pe prt#:prtf $output_data/$fname/OUTPUT  _prt    nc
196DATA_PRT_NETCDF        out:loc:pe prt#:prtf $output_data/$fname/OUTPUT  _prt    nc
197DATA_DVR               out:loc:pe dvr       $output_data/$fname/OUTPUT  _dvr
198#
199DVRP_LOG          out:loc:tr   dv#       $base_data/$fname/MONITORING  _dvrp_log
200DVRP_LOG          out:loc:tra  dvf       $base_data/$fname/MONITORING  _dvrp_log
201PARTICLE_INFO     out:loc:tr   pt#       $base_data/$fname/MONITORING  _prt_info
202PARTICLE_INFO     out:loc:tra  ptf       $base_data/$fname/MONITORING  _prt_info
203PARTICLE_DATA     out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT      _prt_dat
204# A BLANK LINE MUST FOLLOW
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