[553] | 1 | <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> |
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[557] | 2 | <HTML> |
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| 3 | <HEAD> |
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| 4 | <META HTTP-EQUIV="CONTENT-TYPE" CONTENT="text/html; charset=utf-8"> |
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| 5 | <TITLE>PALM technical/numerical documentation</TITLE> |
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| 6 | <META NAME="GENERATOR" CONTENT="OpenOffice.org 3.0 (Unix)"> |
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| 7 | <META NAME="AUTHOR" CONTENT="Siegfried Raasch"> |
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| 8 | <META NAME="CREATED" CONTENT="0;0"> |
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| 9 | <META NAME="CHANGED" CONTENT="20100907;16492700"> |
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| 10 | <META NAME="KEYWORDS" CONTENT="parallel LES model"> |
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| 11 | </HEAD> |
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| 12 | <BODY LANG="en-US" DIR="LTR"> |
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| 13 | <P STYLE="margin-bottom: 0in"><FONT SIZE=7>PALM </FONT>a |
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| 14 | <B>pa</B>rallelized <B>L</B>ES <B>m</B>odel |
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| 15 | </P> |
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| 16 | <HR> |
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| 17 | <P STYLE="margin-bottom: 0in"><BR><FONT SIZE=5>technical/numerical |
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| 18 | documentation</FONT> <BR> <BR> |
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| 19 | </P> |
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| 20 | <P ALIGN=CENTER STYLE="margin-bottom: 0in"> |
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| 21 | </P> |
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| 22 | <TABLE CELLPADDING=0 CELLSPACING=0> |
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| 23 | <TR> |
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| 24 | <TD> |
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| 25 | <P><B>Current fixed release:</B></P> |
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| 26 | </TD> |
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| 27 | <TD> |
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| 28 | <P><B>3.7a</B></P> |
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| 29 | </TD> |
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| 30 | </TR> |
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| 31 | <TR> |
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| 32 | <TD> |
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| 33 | <P><B>Last change of this document</B>: </P> |
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| 34 | </TD> |
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| 35 | <TD> |
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| 36 | <P><B>$Id: technical_documentation.html 544 2010-08-17 10:44:58Z |
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| 37 | maronga $</B></P> |
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| 38 | </TD> |
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| 39 | </TR> |
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| 40 | </TABLE> |
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| 41 | <HR> |
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| 42 | <P><FONT SIZE=5>Table of contents</FONT> <BR> <BR> |
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| 43 | </P> |
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| 44 | <UL> |
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| 45 | <P><A HREF="#Kapitel1.0">1.0</A> History of changes |
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| 46 | </P> |
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| 47 | <P><A HREF="#Kapitel2.0">2.0</A> How to change the source code |
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| 48 | and how to document modifications</P> |
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| 49 | <P><A HREF="#Kapitel3.0">3.0</A> Description of selected model |
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| 50 | numerics<BR> </P> |
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| 51 | </UL> |
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| 52 | <P><BR><BR> |
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| 53 | </P> |
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| 54 | <H2><A NAME="Kapitel1.0"></A>1.0 History of changes</H2> |
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| 55 | <P STYLE="margin-bottom: 0in">The following table documents all |
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[553] | 56 | changes to the PALM repository since 2009. Older changes can be found |
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[557] | 57 | <A HREF="tec_doc_1998-2008.html">here</A>.<BR><BR>Entries in the |
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[553] | 58 | fifth column specify the type of the change: change of existing |
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| 59 | code (C), new code (N) or bugfix (B). More detailed information about |
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| 60 | the changes may sometimes be found in the header comment lines of the |
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[557] | 61 | respective routines. <BR> |
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| 62 | </P> |
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| 63 | <TABLE WIDTH=1223 BORDER=1 CELLPADDING=2 CELLSPACING=3> |
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| 64 | <COL WIDTH=37> |
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| 65 | <COL WIDTH=56> |
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| 66 | <COL WIDTH=68> |
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| 67 | <COL WIDTH=62> |
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| 68 | <COL WIDTH=36> |
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| 69 | <COL WIDTH=517> |
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| 70 | <COL WIDTH=393> |
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| 71 | <TR> |
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| 72 | <TD WIDTH=37> |
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| 73 | <P><FONT SIZE=4><B>date</B></FONT></P> |
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| 74 | </TD> |
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| 75 | <TD WIDTH=56> |
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| 76 | <P><FONT SIZE=4><B>author</B></FONT></P> |
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| 77 | </TD> |
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| 78 | <TD WIDTH=68> |
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| 79 | <P><FONT SIZE=4><B>svn revision</B></FONT></P> |
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| 80 | </TD> |
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| 81 | <TD WIDTH=62> |
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| 82 | <P><FONT SIZE=4><B>last release</B></FONT></P> |
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| 83 | </TD> |
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| 84 | <TD WIDTH=36> |
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| 85 | <P><FONT SIZE=4><B>type</B></FONT></P> |
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| 86 | </TD> |
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| 87 | <TD WIDTH=517> |
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| 88 | <P><FONT SIZE=4><B>description</B></FONT></P> |
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| 89 | </TD> |
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| 90 | <TD WIDTH=393> |
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| 91 | <P><FONT SIZE=4><B>affected routines</B></FONT></P> |
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| 92 | </TD> |
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| 93 | </TR> |
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| 94 | <TR> |
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| 95 | <TD WIDTH=37 SDVAL="40368" SDNUM="1033;0;MM/DD/YY"> |
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| 96 | <P STYLE="font-weight: normal"><FONT SIZE=3>07/09/10</FONT></P> |
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| 97 | </TD> |
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| 98 | <TD WIDTH=56> |
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| 99 | <P STYLE="font-weight: normal"><FONT SIZE=3>CH</FONT></P> |
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| 100 | </TD> |
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| 101 | <TD WIDTH=68 SDVAL="557" SDNUM="1033;"> |
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| 102 | <P STYLE="font-weight: normal"><FONT SIZE=3>557</FONT></P> |
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| 103 | </TD> |
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| 104 | <TD WIDTH=62> |
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| 105 | <P STYLE="font-weight: normal"><FONT SIZE=3>3.7a</FONT></P> |
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| 106 | </TD> |
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| 107 | <TD WIDTH=36> |
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| 108 | <P STYLE="font-weight: normal"><FONT SIZE=3>B</FONT></P> |
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| 109 | </TD> |
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| 110 | <TD WIDTH=517> |
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| 111 | <P STYLE="font-weight: normal"><FONT SIZE=3>Bugfix of message |
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| 112 | string in if statement (dz_stretch_level) of subroutine |
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| 113 | set_mask_locations.</FONT></P> |
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| 114 | <P STYLE="font-weight: normal"><FONT SIZE=3>The changes concern |
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| 115 | the masked data output, which is still not documented.</FONT></P> |
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| 116 | </TD> |
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| 117 | <TD WIDTH=393> |
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| 118 | <P STYLE="font-weight: normal"><FONT SIZE=3>init_masks</FONT></P> |
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| 119 | </TD> |
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| 120 | </TR> |
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| 121 | <TR> |
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| 122 | <TD WIDTH=37> |
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| 123 | <P>07/09/10</P> |
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| 124 | </TD> |
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| 125 | <TD WIDTH=56> |
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| 126 | <P>SR</P> |
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| 127 | </TD> |
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| 128 | <TD WIDTH=68> |
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| 129 | <P>556</P> |
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| 130 | </TD> |
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| 131 | <TD WIDTH=62> |
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| 132 | <P>3.7a</P> |
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| 133 | </TD> |
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| 134 | <TD WIDTH=36> |
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| 135 | <P>C</P> |
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| 136 | </TD> |
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| 137 | <TD WIDTH=517> |
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| 138 | <P>Documentation for <FONT FACE="Courier New, Courier, monospace">surface_heatflux |
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| 139 | </FONT>in case of <FONT FACE="Courier New, Courier, monospace">prandtl_layer |
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| 140 | </FONT>= <I>.F.</I> improved.<BR><BR>bugfix for wrong netcdf/3.6.3 |
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| 141 | module on lcsgi (mbuild, mrun)</P> |
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| 142 | </TD> |
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| 143 | <TD WIDTH=393> |
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| 144 | <P>mbuild, mrun</P> |
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| 145 | </TD> |
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| 146 | </TR> |
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| 147 | <TR> |
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| 148 | <TD WIDTH=37> |
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| 149 | <P><BR> |
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| 150 | </P> |
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| 151 | </TD> |
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| 152 | <TD WIDTH=56> |
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| 153 | <P><BR> |
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| 154 | </P> |
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| 155 | </TD> |
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| 156 | <TD WIDTH=68> |
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| 157 | <P><BR> |
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| 158 | </P> |
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| 159 | </TD> |
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| 160 | <TD WIDTH=62> |
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| 161 | <P><BR> |
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| 162 | </P> |
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| 163 | </TD> |
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| 164 | <TD WIDTH=36> |
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| 165 | <P>B</P> |
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| 166 | </TD> |
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| 167 | <TD WIDTH=517> |
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| 168 | <P>Bugfix in if statement (disturb_heatflux)<BR><BR>Bugfix: in |
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| 169 | 2201 statement: closing " was missing |
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| 170 | (interpret_config)<BR><BR>Bugfix: default setting of nzb_local for |
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| 171 | flat topography (init_grid)<BR><BR>Bugfix: wrong dimension used |
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| 172 | for ts_value_l (user_statistics)</P> |
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| 173 | </TD> |
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| 174 | <TD WIDTH=393> |
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| 175 | <P>disturb_heatflux, init_grid, user_statistics<BR><BR>interpret_config</P> |
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| 176 | </TD> |
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| 177 | </TR> |
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| 178 | <TR> |
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| 179 | <TD WIDTH=37 SDVAL="40187" SDNUM="1033;0;MM/DD/YY"> |
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| 180 | <P STYLE="font-weight: normal"><FONT SIZE=3>01/09/10</FONT></P> |
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| 181 | </TD> |
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| 182 | <TD WIDTH=56> |
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| 183 | <P STYLE="font-weight: normal"><FONT SIZE=3>CH</FONT></P> |
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| 184 | </TD> |
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| 185 | <TD WIDTH=68 SDVAL="553" SDNUM="1033;"> |
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| 186 | <P STYLE="font-weight: normal"><FONT SIZE=3>553</FONT></P> |
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| 187 | </TD> |
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| 188 | <TD WIDTH=62> |
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| 189 | <P STYLE="font-weight: normal"><FONT SIZE=3>3.7a</FONT></P> |
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| 190 | </TD> |
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| 191 | <TD WIDTH=36> |
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| 192 | <P STYLE="font-weight: normal"><FONT SIZE=3>C</FONT></P> |
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| 193 | </TD> |
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| 194 | <TD WIDTH=517> |
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| 195 | <P STYLE="font-weight: normal"><FONT SIZE=3>d3dpar-parameters for |
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| 196 | masked output <FONT FACE="Courier New, monospace">data_output_mask_*, |
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[553] | 197 | data_output_mask_user_*, mask_*_x, mask_*_y, mask_*_z, |
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[557] | 198 | mask_*_x_loop, mask_*_y_loop </FONT><FONT FACE="Times New Roman, serif">and |
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| 199 | </FONT><FONT FACE="Courier New, monospace">mask_*_z_loop </FONT>have |
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| 200 | been replaced by corresponding arrays <FONT FACE="Courier New, monospace">data_output_masks, |
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[553] | 201 | data_output_masks_user, mask_x, mask_y, mask_z, mask_x_loop, |
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[557] | 202 | mask_y_loop </FONT><FONT FACE="Times New Roman, serif">and</FONT> |
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| 203 | <FONT FACE="Courier New, monospace">mask_z_loop</FONT></FONT></P> |
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| 204 | <P STYLE="font-weight: normal"><FONT SIZE=3>inipar-parameter <FONT FACE="Courier New, monospace">masks</FONT> |
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| 205 | has been removed. </FONT> |
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| 206 | </P> |
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| 207 | <P STYLE="font-weight: normal"><FONT SIZE=3>The changes concern |
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| 208 | the masked data output, which is still not documented.</FONT></P> |
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| 209 | </TD> |
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| 210 | <TD WIDTH=393> |
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| 211 | <P STYLE="font-weight: normal"><FONT SIZE=3>check_parameters, |
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| 212 | init_masks, modules, parin, user_parin</FONT></P> |
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| 213 | </TD> |
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| 214 | </TR> |
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| 215 | <TR> |
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| 216 | <TD WIDTH=37> |
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| 217 | <P>17/08/10</P> |
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| 218 | </TD> |
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| 219 | <TD WIDTH=56> |
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| 220 | <P>BM</P> |
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| 221 | </TD> |
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| 222 | <TD WIDTH=68> |
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| 223 | <P>544</P> |
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| 224 | </TD> |
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| 225 | <TD WIDTH=62> |
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| 226 | <P>3.7a</P> |
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| 227 | </TD> |
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| 228 | <TD WIDTH=36> |
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| 229 | <P>B/C/N</P> |
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| 230 | </TD> |
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| 231 | <TD WIDTH=517> |
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| 232 | <P>adjustments for lcxt4; bugfix (mbuild): loading of user-defined |
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| 233 | modules; new .mrun.config.lcxt4 for Cray XT4 in Bergen/Norway</P> |
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| 234 | </TD> |
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| 235 | <TD WIDTH=393> |
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| 236 | <P>mrun, mbuild, subjob</P> |
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| 237 | </TD> |
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| 238 | </TR> |
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| 239 | <TR> |
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| 240 | <TD WIDTH=37> |
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| 241 | <P>15/06/10</P> |
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| 242 | </TD> |
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| 243 | <TD WIDTH=56> |
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| 244 | <P>RH</P> |
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| 245 | </TD> |
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| 246 | <TD WIDTH=68> |
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| 247 | <P>540</P> |
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| 248 | </TD> |
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| 249 | <TD WIDTH=62> |
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| 250 | <P>3.7a</P> |
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| 251 | </TD> |
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| 252 | <TD WIDTH=36> |
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| 253 | <P>C</P> |
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| 254 | </TD> |
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| 255 | <TD WIDTH=517> |
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| 256 | <P>ssh from compute nodes to login nodes on hosts lcsgih/lcsgib is |
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[553] | 257 | done using the names hicegate0/bicegate0 instead of the IP |
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[557] | 258 | addresses</P> |
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| 259 | </TD> |
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| 260 | <TD WIDTH=393> |
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| 261 | <P>mrun</P> |
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| 262 | </TD> |
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| 263 | </TR> |
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| 264 | <TR> |
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| 265 | <TD WIDTH=37> |
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| 266 | <P>21/04/10</P> |
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| 267 | </TD> |
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| 268 | <TD WIDTH=56> |
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| 269 | <P>RH</P> |
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| 270 | </TD> |
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| 271 | <TD WIDTH=68> |
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| 272 | <P>532</P> |
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| 273 | </TD> |
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| 274 | <TD WIDTH=62> |
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| 275 | <P>3.7a</P> |
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| 276 | </TD> |
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| 277 | <TD WIDTH=36> |
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| 278 | <P>C</P> |
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| 279 | </TD> |
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| 280 | <TD WIDTH=517> |
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| 281 | <P>Large scale vertical motion (subsidence/ascent) can be added as |
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[553] | 282 | additional source to the prognostic equation for humidity/passive |
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[557] | 283 | scalar<BR> <BR>character length for dopr_unit |
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| 284 | enlarged<BR><BR>Adjustment of the NCL scripts to allow for output |
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[553] | 285 | of png files |
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[557] | 286 | </P> |
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| 287 | </TD> |
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| 288 | <TD WIDTH=393> |
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| 289 | <P>modules, prognostic_equations<BR><BR>.ncl.config.default, |
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| 290 | cross_sections.ncl, profiles.ncl, timeseries.ncl, spectra.ncl</P> |
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| 291 | </TD> |
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| 292 | </TR> |
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| 293 | <TR> |
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| 294 | <TD WIDTH=37> |
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| 295 | <P><BR> |
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| 296 | </P> |
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| 297 | </TD> |
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| 298 | <TD WIDTH=56> |
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| 299 | <P><BR> |
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| 300 | </P> |
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| 301 | </TD> |
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| 302 | <TD WIDTH=68> |
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| 303 | <P><BR> |
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| 304 | </P> |
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| 305 | </TD> |
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| 306 | <TD WIDTH=62> |
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| 307 | <P><BR> |
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| 308 | </P> |
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| 309 | </TD> |
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| 310 | <TD WIDTH=36> |
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| 311 | <P>B</P> |
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| 312 | </TD> |
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| 313 | <TD WIDTH=517> |
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| 314 | <P>Bugfix: unit of hyp changed to dbar</P> |
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| 315 | </TD> |
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| 316 | <TD WIDTH=393> |
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| 317 | <P>check_parameters</P> |
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| 318 | </TD> |
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| 319 | </TR> |
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| 320 | <TR> |
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| 321 | <TD WIDTH=37> |
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| 322 | <P>01/04/10</P> |
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| 323 | </TD> |
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| 324 | <TD WIDTH=56> |
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| 325 | <P>RH</P> |
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| 326 | </TD> |
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| 327 | <TD WIDTH=68> |
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| 328 | <P>530</P> |
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| 329 | </TD> |
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| 330 | <TD WIDTH=62> |
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| 331 | <P>3.7a</P> |
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| 332 | </TD> |
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| 333 | <TD WIDTH=36> |
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| 334 | <P>B</P> |
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| 335 | </TD> |
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| 336 | <TD WIDTH=517> |
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| 337 | <P>Bugfix: treatment of special character * in NCL variables |
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| 338 | containing lists corrected</P> |
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| 339 | </TD> |
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| 340 | <TD WIDTH=393> |
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| 341 | <P>palmplot</P> |
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| 342 | </TD> |
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| 343 | </TR> |
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| 344 | <TR> |
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| 345 | <TD WIDTH=37> |
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| 346 | <P>31/03/10</P> |
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| 347 | </TD> |
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| 348 | <TD WIDTH=56> |
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| 349 | <P>RH</P> |
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| 350 | </TD> |
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| 351 | <TD WIDTH=68> |
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| 352 | <P>529</P> |
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| 353 | </TD> |
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| 354 | <TD WIDTH=62> |
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| 355 | <P>3.7a</P> |
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| 356 | </TD> |
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| 357 | <TD WIDTH=36> |
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| 358 | <P>C</P> |
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| 359 | </TD> |
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| 360 | <TD WIDTH=517> |
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| 361 | <P>List of variable names have to specified using blank separated |
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| 362 | lists and single quotes</P> |
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| 363 | </TD> |
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| 364 | <TD WIDTH=393> |
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| 365 | <P>palmplot</P> |
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| 366 | </TD> |
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| 367 | </TR> |
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| 368 | <TR> |
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| 369 | <TD WIDTH=37> |
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| 370 | <P>30/03/10</P> |
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| 371 | </TD> |
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| 372 | <TD WIDTH=56> |
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| 373 | <P>RH</P> |
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| 374 | </TD> |
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| 375 | <TD WIDTH=68> |
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| 376 | <P>526</P> |
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| 377 | </TD> |
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| 378 | <TD WIDTH=62> |
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| 379 | <P>3.7a</P> |
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| 380 | </TD> |
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| 381 | <TD WIDTH=36> |
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| 382 | <P>C</P> |
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| 383 | </TD> |
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| 384 | <TD WIDTH=517> |
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| 385 | <P>Adjustment of the NCL scripts and <FONT FACE="Courier New, Courier, monospace">palmplot |
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| 386 | </FONT>to allow for special characters in NetCDF variable names |
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| 387 | </P> |
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| 388 | </TD> |
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| 389 | <TD WIDTH=393> |
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| 390 | <P>palmplot, .ncl.config.default, cross_sections.ncl, |
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| 391 | profiles.ncl, timeseries.ncl, spectra.ncl</P> |
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| 392 | </TD> |
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| 393 | </TR> |
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| 394 | <TR> |
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| 395 | <TD WIDTH=37> |
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| 396 | <P>30/03/10</P> |
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| 397 | </TD> |
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| 398 | <TD WIDTH=56> |
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| 399 | <P>SR</P> |
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| 400 | </TD> |
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| 401 | <TD WIDTH=68> |
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| 402 | <P>525</P> |
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| 403 | </TD> |
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| 404 | <TD WIDTH=62> |
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| 405 | <P>3.7a</P> |
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| 406 | </TD> |
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| 407 | <TD WIDTH=36> |
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| 408 | <P>B</P> |
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| 409 | </TD> |
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| 410 | <TD WIDTH=517> |
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| 411 | <P>Bugfix: "/" in netcdf profile variable names replaced |
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| 412 | by ":"</P> |
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| 413 | </TD> |
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| 414 | <TD WIDTH=393> |
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| 415 | <P>check_parameters</P> |
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| 416 | </TD> |
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| 417 | </TR> |
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| 418 | <TR> |
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| 419 | <TD WIDTH=37> |
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| 420 | <P>19/03/10</P> |
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| 421 | </TD> |
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| 422 | <TD WIDTH=56> |
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| 423 | <P>SR</P> |
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| 424 | </TD> |
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| 425 | <TD WIDTH=68> |
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| 426 | <P>520</P> |
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| 427 | </TD> |
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| 428 | <TD WIDTH=62> |
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| 429 | <P>3.7a</P> |
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| 430 | </TD> |
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| 431 | <TD WIDTH=36> |
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| 432 | <P>N</P> |
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| 433 | </TD> |
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| 434 | <TD WIDTH=517> |
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| 435 | <P>NetCDF4 support for particle data. Total number of particles is |
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| 436 | allowed to increase during the run, when netcdf_data_format > <I>2</I> |
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| 437 | is used.</P> |
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| 438 | </TD> |
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| 439 | <TD WIDTH=393> |
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| 440 | <P>advec_particles, check_open, netcdf</P> |
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| 441 | </TD> |
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| 442 | </TR> |
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| 443 | <TR> |
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| 444 | <TD WIDTH=37> |
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| 445 | <P><BR> |
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| 446 | </P> |
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| 447 | </TD> |
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| 448 | <TD WIDTH=56> |
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| 449 | <P><BR> |
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| 450 | </P> |
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| 451 | </TD> |
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| 452 | <TD WIDTH=68> |
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| 453 | <P><BR> |
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| 454 | </P> |
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| 455 | </TD> |
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| 456 | <TD WIDTH=62> |
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| 457 | <P><BR> |
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| 458 | </P> |
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| 459 | </TD> |
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| 460 | <TD WIDTH=36> |
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| 461 | <P>C</P> |
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| 462 | </TD> |
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| 463 | <TD WIDTH=517> |
---|
| 464 | <P>Special characters like * and " are now allowed for NetCDF |
---|
[553] | 465 | variable names. Replacement of these characters has been removed |
---|
[557] | 466 | (routine clean_netcdf_varname removed)</P> |
---|
| 467 | </TD> |
---|
| 468 | <TD WIDTH=393> |
---|
| 469 | <P><BR> |
---|
| 470 | </P> |
---|
| 471 | </TD> |
---|
| 472 | </TR> |
---|
| 473 | <TR> |
---|
| 474 | <TD WIDTH=37> |
---|
| 475 | <P>18/03/10</P> |
---|
| 476 | </TD> |
---|
| 477 | <TD WIDTH=56> |
---|
| 478 | <P>SR</P> |
---|
| 479 | </TD> |
---|
| 480 | <TD WIDTH=68> |
---|
| 481 | <P>516</P> |
---|
| 482 | </TD> |
---|
| 483 | <TD WIDTH=62> |
---|
| 484 | <P>3.7a</P> |
---|
| 485 | </TD> |
---|
| 486 | <TD WIDTH=36> |
---|
| 487 | <P>N</P> |
---|
| 488 | </TD> |
---|
| 489 | <TD WIDTH=517> |
---|
| 490 | <P>Simple installation method has been documented (see chapter |
---|
[553] | 491 | 5.0). Respective scripts and configuration files have been |
---|
[557] | 492 | updated.</P> |
---|
| 493 | </TD> |
---|
| 494 | <TD WIDTH=393> |
---|
| 495 | <P>palm_simple_install, palm_simple_run</P> |
---|
| 496 | </TD> |
---|
| 497 | </TR> |
---|
| 498 | <TR> |
---|
| 499 | <TD WIDTH=37> |
---|
| 500 | <P><BR> |
---|
| 501 | </P> |
---|
| 502 | </TD> |
---|
| 503 | <TD WIDTH=56> |
---|
| 504 | <P><BR> |
---|
| 505 | </P> |
---|
| 506 | </TD> |
---|
| 507 | <TD WIDTH=68> |
---|
| 508 | <P><BR> |
---|
| 509 | </P> |
---|
| 510 | </TD> |
---|
| 511 | <TD WIDTH=62> |
---|
| 512 | <P><BR> |
---|
| 513 | </P> |
---|
| 514 | </TD> |
---|
| 515 | <TD WIDTH=36> |
---|
| 516 | <P>B</P> |
---|
| 517 | </TD> |
---|
| 518 | <TD WIDTH=517> |
---|
| 519 | <P>opt=1 is forced for PGI-compiler in routine <FONT FACE="Courier New, Courier, monospace">buoyancy |
---|
| 520 | </FONT>by compiler-directive. Otherwise, program aborts with |
---|
| 521 | SIGFPE.</P> |
---|
| 522 | </TD> |
---|
| 523 | <TD WIDTH=393> |
---|
| 524 | <P>buoyancy</P> |
---|
| 525 | </TD> |
---|
| 526 | </TR> |
---|
| 527 | <TR> |
---|
| 528 | <TD WIDTH=37> |
---|
| 529 | <P>16/03/10</P> |
---|
| 530 | </TD> |
---|
| 531 | <TD WIDTH=56> |
---|
| 532 | <P>RH</P> |
---|
| 533 | </TD> |
---|
| 534 | <TD WIDTH=68> |
---|
| 535 | <P>513</P> |
---|
| 536 | </TD> |
---|
| 537 | <TD WIDTH=62> |
---|
| 538 | <P>3.7a</P> |
---|
| 539 | </TD> |
---|
| 540 | <TD WIDTH=36> |
---|
| 541 | <P>N</P> |
---|
| 542 | </TD> |
---|
| 543 | <TD WIDTH=517> |
---|
| 544 | <P>NCL scripts can be run with the shell script <FONT FACE="Courier New, Courier, monospace">palmplot.</FONT></P> |
---|
| 545 | </TD> |
---|
| 546 | <TD WIDTH=393> |
---|
| 547 | <P>palmplot, .ncl.config.default, cross_sections.ncl, profiles.ncl</P> |
---|
| 548 | </TD> |
---|
| 549 | </TR> |
---|
| 550 | <TR> |
---|
| 551 | <TD WIDTH=37> |
---|
| 552 | <P>12/03/10</P> |
---|
| 553 | </TD> |
---|
| 554 | <TD WIDTH=56> |
---|
| 555 | <P>SR</P> |
---|
| 556 | </TD> |
---|
| 557 | <TD WIDTH=68> |
---|
| 558 | <P>509</P> |
---|
| 559 | </TD> |
---|
| 560 | <TD WIDTH=62> |
---|
| 561 | <P>3.7a</P> |
---|
| 562 | </TD> |
---|
| 563 | <TD WIDTH=36> |
---|
| 564 | <P>B</P> |
---|
| 565 | </TD> |
---|
| 566 | <TD WIDTH=517> |
---|
| 567 | <P>bugfix for rev 504: remode_md was given a wrong value</P> |
---|
| 568 | </TD> |
---|
| 569 | <TD WIDTH=393> |
---|
| 570 | <P>mbuild</P> |
---|
| 571 | </TD> |
---|
| 572 | </TR> |
---|
| 573 | <TR> |
---|
| 574 | <TD WIDTH=37> |
---|
| 575 | <P>08/03/10</P> |
---|
| 576 | </TD> |
---|
| 577 | <TD WIDTH=56> |
---|
| 578 | <P>SR</P> |
---|
| 579 | </TD> |
---|
| 580 | <TD WIDTH=68> |
---|
| 581 | <P>506</P> |
---|
| 582 | </TD> |
---|
| 583 | <TD WIDTH=62> |
---|
| 584 | <P>3.7a</P> |
---|
| 585 | </TD> |
---|
| 586 | <TD WIDTH=36> |
---|
| 587 | <P>C</P> |
---|
| 588 | </TD> |
---|
| 589 | <TD WIDTH=517> |
---|
| 590 | <P>hack for better usage of <B>mrun</B> on Kyoto computing center |
---|
| 591 | machine (<FONT FACE="Courier New, Courier, monospace">lckyoto</FONT>)</P> |
---|
| 592 | </TD> |
---|
| 593 | <TD WIDTH=393> |
---|
| 594 | <P>mrun</P> |
---|
| 595 | </TD> |
---|
| 596 | </TR> |
---|
| 597 | <TR> |
---|
| 598 | <TD WIDTH=37> |
---|
| 599 | <P>03/03/10</P> |
---|
| 600 | </TD> |
---|
| 601 | <TD WIDTH=56> |
---|
| 602 | <P>SR</P> |
---|
| 603 | </TD> |
---|
| 604 | <TD WIDTH=68> |
---|
| 605 | <P>504</P> |
---|
| 606 | </TD> |
---|
| 607 | <TD WIDTH=62> |
---|
| 608 | <P>3.7a</P> |
---|
| 609 | </TD> |
---|
| 610 | <TD WIDTH=36> |
---|
| 611 | <P>C</P> |
---|
| 612 | </TD> |
---|
| 613 | <TD WIDTH=517> |
---|
| 614 | <P><FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> |
---|
| 615 | is now directly called within <B>mrun</B> and must not be given by |
---|
[553] | 616 | an output command in the configuration file any more. Please |
---|
[557] | 617 | remove the respective output command (<FONT FACE="Courier New, Courier, monospace">OC:combine_plot_fields.x</FONT>) |
---|
| 618 | from your configuration file!<BR><BR>Utility programs |
---|
| 619 | (<FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT>, |
---|
| 620 | <FONT FACE="Courier New, Courier, monospace">interpret_config</FONT>) |
---|
| 621 | are created by <B>mbuild</B> separately for each block in the |
---|
| 622 | configuration file. Depending on option <FONT FACE="Courier New, Courier, monospace">-K</FONT>, |
---|
| 623 | <B>mrun</B> is using the utility programs for the respective |
---|
| 624 | block.<BR><BR>Utility programs are also compiled in parallel, |
---|
| 625 | depending on variable <FONT FACE="Courier New, Courier, monospace">%mopts</FONT> |
---|
| 626 | in the configuration file..<BR><BR>Default configuration files |
---|
| 627 | updated.</P> |
---|
| 628 | </TD> |
---|
| 629 | <TD WIDTH=393> |
---|
| 630 | <P>mbuild, mrun, UTIL/Makefile, SCRIPTS/.mrun.config.*</P> |
---|
| 631 | </TD> |
---|
| 632 | </TR> |
---|
| 633 | <TR> |
---|
| 634 | <TD WIDTH=37> |
---|
| 635 | <P>02/03/10</P> |
---|
| 636 | </TD> |
---|
| 637 | <TD WIDTH=56> |
---|
| 638 | <P>SR</P> |
---|
| 639 | </TD> |
---|
| 640 | <TD WIDTH=68> |
---|
| 641 | <P>496</P> |
---|
| 642 | </TD> |
---|
| 643 | <TD WIDTH=62> |
---|
| 644 | <P>3.7a</P> |
---|
| 645 | </TD> |
---|
| 646 | <TD WIDTH=36> |
---|
| 647 | <P>C</P> |
---|
| 648 | </TD> |
---|
| 649 | <TD WIDTH=517> |
---|
| 650 | <P>Particle data for restart runs are only written if environment |
---|
| 651 | variable <FONT FACE="Courier New, Courier, monospace">write_binary</FONT> |
---|
| 652 | = <I>.T.</I>, i.e. particle data are now handled in the same way |
---|
| 653 | as the other restart data.</P> |
---|
| 654 | </TD> |
---|
| 655 | <TD WIDTH=393> |
---|
| 656 | <P>palm</P> |
---|
| 657 | </TD> |
---|
| 658 | </TR> |
---|
| 659 | <TR> |
---|
| 660 | <TD WIDTH=37> |
---|
| 661 | <P>01/03/10</P> |
---|
| 662 | </TD> |
---|
| 663 | <TD WIDTH=56> |
---|
| 664 | <P>SR</P> |
---|
| 665 | </TD> |
---|
| 666 | <TD WIDTH=68> |
---|
| 667 | <P>494</P> |
---|
| 668 | </TD> |
---|
| 669 | <TD WIDTH=62> |
---|
| 670 | <P>3.7a</P> |
---|
| 671 | </TD> |
---|
| 672 | <TD WIDTH=36> |
---|
| 673 | <P>N</P> |
---|
| 674 | </TD> |
---|
| 675 | <TD WIDTH=517> |
---|
| 676 | <P>Output in NetCDF4-format.<BR><BR>NetCDF4 allows for parallel |
---|
[553] | 677 | I/O. Also, variables are not limited in size any more (i.e. arrays |
---|
| 678 | can be larger than 2GB). The new d3par-parameter |
---|
[557] | 679 | <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT>.can |
---|
| 680 | be used to select among the different NetCDF file formats (<I>1</I>: |
---|
| 681 | classic format, <I>2</I>: 64-bit-offset format (this is now the |
---|
| 682 | default), <I>3</I>: NetCDF4/HDF5 format, <I>4</I>: NetCDF4 format |
---|
| 683 | with NF90_CLASSIC_MODEL bit set). Setting <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT> |
---|
| 684 | > <I>2</I> only affects 2d- and 3d-output, i.e. there is no |
---|
[553] | 685 | parallel output for profiles, time series, spectra, and particles. |
---|
[557] | 686 | Parallel output of particle data may realized in the future.<BR><BR>In |
---|
[553] | 687 | case of parallel output, all PEs write into one file, which means |
---|
[557] | 688 | that postprocessing the data with <FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> |
---|
[553] | 689 | (merging data from single files - one per PE - into one file) is |
---|
| 690 | not neccessary. In this case, flag files are automatically set, |
---|
[557] | 691 | telling <FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> |
---|
| 692 | that nothing is to be done.<BR><BR>Using NetCDF4 format requires a |
---|
[553] | 693 | NetCDF4/HDF library. Respective settings for -I, -L, and -l |
---|
| 694 | compiler/loader options for the SGI-ICE at HLRN can be found in |
---|
| 695 | the new example configuration file |
---|
[557] | 696 | <FONT FACE="Courier New, Courier, monospace">..../trunk/SCRIPTS/.mrun.config.imuk_ice2_netcdf4</FONT><BR><BR><B>Attention:</B><BR>So |
---|
[553] | 697 | far, NetCDF parallel I/O has only been tested a little. Further |
---|
| 698 | performance optimizations may be required, especially in case of |
---|
| 699 | large data sets (e.g. data chunking, or lustre file system |
---|
[557] | 700 | settings with <FONT FACE="Courier New, Courier, monospace">lfs |
---|
| 701 | setstripe</FONT>). <B>Please report bugs and performance problems |
---|
| 702 | immediately!</B><BR><BR><FONT FACE="Courier New, Courier, monospace">combine_plot_fields</FONT> |
---|
| 703 | outputs cpu-time needed for file merging.<BR><BR>Modules to be |
---|
[553] | 704 | loaded for compilation (mbuild) or job execution (mrun) can/should |
---|
[557] | 705 | now be given in the configuration file (<FONT FACE="Courier New, Courier, monospace">.mrun.config</FONT>) |
---|
| 706 | using variable <FONT FACE="Courier New, Courier, monospace">modules</FONT>. |
---|
| 707 | Example:<BR><BR> <FONT FACE="Courier New, Courier, monospace">%modules |
---|
[553] | 708 | ifort/11.0.069:netcdf lcsgih |
---|
[557] | 709 | parallel</FONT><BR><BR>This method replaces the (undocumented) |
---|
| 710 | <FONT FACE="Courier New, Courier, monospace">mpilib</FONT>-variable.<BR><BR><B>WARNING:</B><BR><B>All |
---|
[553] | 711 | fixed settings of modules in the scripts mbuild, mrun, and subjob |
---|
[557] | 712 | have been removed! Please set the </B><FONT FACE="Courier New, Courier, monospace"><B>modules</B></FONT> |
---|
| 713 | <B>variable appropriately and remove the mpilib variable in your |
---|
| 714 | configuration file.<BR><BR></B>Compilation time can be reduced be |
---|
[553] | 715 | using parallel make. The number of allowed simultaneous compiler |
---|
| 716 | calls (threads) is set in the configuration file using variable |
---|
[557] | 717 | <FONT FACE="Courier New, Courier, monospace">mopt</FONT>, e.g.<BR><BR> |
---|
| 718 | <FONT FACE="Courier New, Courier, monospace">%mopts -j:4 |
---|
| 719 | lcsgih parallel</FONT><BR><BR>allows a maximum of 4 routines to be |
---|
[553] | 720 | compiled simultaneously (provided that the makefile does not show |
---|
[557] | 721 | any dependencies between these routines).</P> |
---|
| 722 | </TD> |
---|
| 723 | <TD WIDTH=393> |
---|
| 724 | <P>check_open, check_parameters, close_file, data_output_2d, |
---|
[553] | 725 | data_output_3d, header, modules, netcdf, |
---|
[557] | 726 | parin<BR><BR>combine_plot_fields<BR><BR>mbuild, mrun, subjob</P> |
---|
| 727 | </TD> |
---|
| 728 | </TR> |
---|
| 729 | <TR> |
---|
| 730 | <TD WIDTH=37> |
---|
| 731 | <P><BR> |
---|
| 732 | </P> |
---|
| 733 | </TD> |
---|
| 734 | <TD WIDTH=56> |
---|
| 735 | <P><BR> |
---|
| 736 | </P> |
---|
| 737 | </TD> |
---|
| 738 | <TD WIDTH=68> |
---|
| 739 | <P><BR> |
---|
| 740 | </P> |
---|
| 741 | </TD> |
---|
| 742 | <TD WIDTH=62> |
---|
| 743 | <P><BR> |
---|
| 744 | </P> |
---|
| 745 | </TD> |
---|
| 746 | <TD WIDTH=36> |
---|
| 747 | <P>C</P> |
---|
| 748 | </TD> |
---|
| 749 | <TD WIDTH=517> |
---|
| 750 | <P>d3par-parameters <FONT FACE="Courier New, Courier, monospace">netcdf_64bit</FONT> |
---|
| 751 | and <FONT FACE="Courier New, Courier, monospace">netcdf_64bit_3d</FONT> |
---|
| 752 | have been removed. Use the new d3par-variable <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT> |
---|
| 753 | = <I>2</I> for choosing the NetCDF 64bit-offset format (this is |
---|
[553] | 754 | the default from now on). The offset-format can not be set |
---|
[557] | 755 | independently for the 3d-output-data any more.<BR><BR>d3par-parameters |
---|
| 756 | <FONT FACE="Courier New, Courier, monospace">netcdf_format_mask</FONT>, |
---|
| 757 | <FONT FACE="Courier New, Courier, monospace">netcdf_format_mask_av</FONT>, |
---|
| 758 | and variables <FONT FACE="Courier New, Courier, monospace">nc_format_mask</FONT>, |
---|
| 759 | <FONT FACE="Courier New, Courier, monospace">format_parallel_io</FONT> |
---|
[553] | 760 | removed. They are replaced by the new parameter |
---|
[557] | 761 | <FONT FACE="Courier New, Courier, monospace">netcdf_data_format</FONT>. |
---|
[553] | 762 | This change concerns the masked data output, which is still not |
---|
[557] | 763 | documented.</P> |
---|
| 764 | </TD> |
---|
| 765 | <TD WIDTH=393> |
---|
| 766 | <P>check_open, close_file,<BR>data_output_mask, header, |
---|
| 767 | init_masks, modules, parin</P> |
---|
| 768 | </TD> |
---|
| 769 | </TR> |
---|
| 770 | <TR> |
---|
| 771 | <TD WIDTH=37> |
---|
| 772 | <P><BR> |
---|
| 773 | </P> |
---|
| 774 | </TD> |
---|
| 775 | <TD WIDTH=56> |
---|
| 776 | <P><BR> |
---|
| 777 | </P> |
---|
| 778 | </TD> |
---|
| 779 | <TD WIDTH=68> |
---|
| 780 | <P><BR> |
---|
| 781 | </P> |
---|
| 782 | </TD> |
---|
| 783 | <TD WIDTH=62> |
---|
| 784 | <P><BR> |
---|
| 785 | </P> |
---|
| 786 | </TD> |
---|
| 787 | <TD WIDTH=36> |
---|
| 788 | <P>B</P> |
---|
| 789 | </TD> |
---|
| 790 | <TD WIDTH=517> |
---|
| 791 | <P>Bugfix in trunk/UTIL/Makefile: forgot to compile for |
---|
| 792 | interpret_config.<BR><BR>Bugfix: timeseries data have to be |
---|
| 793 | collected by PE0 (user_statistics).</P> |
---|
| 794 | </TD> |
---|
| 795 | <TD WIDTH=393> |
---|
| 796 | <P>user_statistics<BR><BR>trunk/UTIL/Makefile</P> |
---|
| 797 | </TD> |
---|
| 798 | </TR> |
---|
| 799 | <TR> |
---|
| 800 | <TD WIDTH=37> |
---|
| 801 | <P>05/02/10</P> |
---|
| 802 | </TD> |
---|
| 803 | <TD WIDTH=56> |
---|
| 804 | <P>SR</P> |
---|
| 805 | </TD> |
---|
| 806 | <TD WIDTH=68> |
---|
| 807 | <P>485</P> |
---|
| 808 | </TD> |
---|
| 809 | <TD WIDTH=62> |
---|
| 810 | <P>3.7a</P> |
---|
| 811 | </TD> |
---|
| 812 | <TD WIDTH=36> |
---|
| 813 | <P>B</P> |
---|
| 814 | </TD> |
---|
| 815 | <TD WIDTH=517> |
---|
| 816 | <P><FONT FACE="Courier New, Courier, monospace">ngp_3d</FONT>, |
---|
| 817 | <FONT FACE="Courier New, Courier, monospace">ngp_3d_inner</FONT> |
---|
[553] | 818 | changed to 64 bit. Otherwise, on large grids > 2*10**9 grid |
---|
| 819 | points some global statistics (e.g. total kinetic energy) have |
---|
[557] | 820 | wrong values.</P> |
---|
| 821 | </TD> |
---|
| 822 | <TD WIDTH=393> |
---|
| 823 | <P>init_3d_model, modules</P> |
---|
| 824 | </TD> |
---|
| 825 | </TR> |
---|
| 826 | <TR> |
---|
| 827 | <TD WIDTH=37> |
---|
| 828 | <P>05/02/10</P> |
---|
| 829 | </TD> |
---|
| 830 | <TD WIDTH=56> |
---|
| 831 | <P>SR</P> |
---|
| 832 | </TD> |
---|
| 833 | <TD WIDTH=68> |
---|
| 834 | <P>484</P> |
---|
| 835 | </TD> |
---|
| 836 | <TD WIDTH=62> |
---|
| 837 | <P>3.7a</P> |
---|
| 838 | </TD> |
---|
| 839 | <TD WIDTH=36> |
---|
| 840 | <P>B</P> |
---|
| 841 | </TD> |
---|
| 842 | <TD WIDTH=517> |
---|
| 843 | <P>Typo in file headers removed ("current" instead of |
---|
| 844 | "actual").</P> |
---|
| 845 | </TD> |
---|
| 846 | <TD WIDTH=393> |
---|
| 847 | <P>many</P> |
---|
| 848 | </TD> |
---|
| 849 | </TR> |
---|
| 850 | <TR> |
---|
| 851 | <TD WIDTH=37> |
---|
| 852 | <P>05/02/10</P> |
---|
| 853 | </TD> |
---|
| 854 | <TD WIDTH=56> |
---|
| 855 | <P>SR</P> |
---|
| 856 | </TD> |
---|
| 857 | <TD WIDTH=68> |
---|
| 858 | <P>483</P> |
---|
| 859 | </TD> |
---|
| 860 | <TD WIDTH=62> |
---|
| 861 | <P>3.7a</P> |
---|
| 862 | </TD> |
---|
| 863 | <TD WIDTH=36> |
---|
| 864 | <P>N</P> |
---|
| 865 | </TD> |
---|
| 866 | <TD WIDTH=517> |
---|
| 867 | <P><FONT FACE="Courier New, Courier, monospace">compare_palm_logs |
---|
| 868 | </FONT>is additionally compiled with <B>mbuild</B> <FONT FACE="Courier New, Courier, monospace">-u</FONT> |
---|
| 869 | . (<FONT FACE="Courier New, Courier, monospace">Makefile</FONT> in |
---|
| 870 | <FONT FACE="Courier New, Courier, monospace">trunk/UTIL</FONT>)<BR><BR>make |
---|
| 871 | options (<FONT FACE="Courier New, Courier, monospace">mopts</FONT>) |
---|
| 872 | to be set by configuration file implemented. (<B>mrun</B>, |
---|
| 873 | <B>mbuild</B>)<BR><BR><FONT FACE="Courier New, Courier, monospace">humidity</FONT> |
---|
| 874 | = <I>.T.</I> can be used for runs with topography. |
---|
| 875 | <FONT FACE="Courier New, Courier, monospace">wall_humidityflux</FONT> |
---|
| 876 | and<BR><FONT FACE="Courier New, Courier, monospace">wall_scalarflux</FONT> |
---|
| 877 | are the corresponding new inipar parameters.<BR>(<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 878 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, |
---|
| 879 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>)<BR><BR>Large |
---|
[553] | 880 | scale vertical motion (subsidence/ascent) can be added as |
---|
| 881 | additional source to the prognostic equation for potential |
---|
[557] | 882 | temperature. See new parameters <FONT FACE="Courier New, Courier, monospace">large_scale_subsidence</FONT>, |
---|
| 883 | <FONT FACE="Courier New, Courier, monospace">ws_vertical_gradient</FONT>, |
---|
| 884 | and <FONT FACE="Courier New, Courier, monospace">ws_vertical_gradient_level</FONT>. |
---|
| 885 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 886 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 887 | <FONT FACE="Courier New, Courier, monospace">Makefile</FONT>, |
---|
| 888 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 889 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 890 | <FONT FACE="Courier New, Courier, monospace">prognostic_equations</FONT>, |
---|
| 891 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 892 | <FONT FACE="Courier New, Courier, monospace">subsidence</FONT>, |
---|
| 893 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Scripts |
---|
[553] | 894 | have been updated for Cray-XT5 machine (lcxt5m) and |
---|
[557] | 895 | Hitachi-machine (lckyoto).<BR><BR>A simple method for installing |
---|
[553] | 896 | and running palm (with limited features) has been added. |
---|
[557] | 897 | (<FONT FACE="Courier New, Courier, monospace">Makefile</FONT>, new |
---|
| 898 | scripts <B>palm_simple_install</B>, <B>palm_simple_run</B>)<BR><BR>Masked |
---|
[553] | 899 | data output has been implemented but it is not documented in the |
---|
| 900 | user manual so far. This feature can already use NetCDF4 file |
---|
| 901 | format. (check_open, check_parameters, close_file, modules, |
---|
| 902 | netcdf, parin, time_integration, user_parin, new: |
---|
[557] | 903 | data_output_mask, init_masks, user_data_output_mask)</P> |
---|
| 904 | </TD> |
---|
| 905 | <TD WIDTH=393> |
---|
| 906 | <P>check_open, check parameters, close_file, header, |
---|
[553] | 907 | init_3d_model, Makefile, mbuild, modules, mrun, netcdf, parin, |
---|
| 908 | prognostic_equations, read_var_list, time_integration, user_parin, |
---|
[557] | 909 | write_var_list<BR><BR><B>new:</B> data_output_mask, |
---|
[553] | 910 | init_masks, palm_simple_install, palm_simple_run, subsidence, |
---|
[557] | 911 | user_data_output_mask</P> |
---|
| 912 | </TD> |
---|
| 913 | </TR> |
---|
| 914 | <TR> |
---|
| 915 | <TD WIDTH=37> |
---|
| 916 | <P><BR> |
---|
| 917 | </P> |
---|
| 918 | </TD> |
---|
| 919 | <TD WIDTH=56> |
---|
| 920 | <P><BR> |
---|
| 921 | </P> |
---|
| 922 | </TD> |
---|
| 923 | <TD WIDTH=68> |
---|
| 924 | <P><BR> |
---|
| 925 | </P> |
---|
| 926 | </TD> |
---|
| 927 | <TD WIDTH=62> |
---|
| 928 | <P><BR> |
---|
| 929 | </P> |
---|
| 930 | </TD> |
---|
| 931 | <TD WIDTH=36> |
---|
| 932 | <P>C</P> |
---|
| 933 | </TD> |
---|
| 934 | <TD WIDTH=517> |
---|
| 935 | <P>2d-decomposition is default for Cray-XT machines. |
---|
| 936 | (<FONT FACE="Courier New, Courier, monospace">init_pegrid</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">var_ts</FONT> |
---|
| 937 | is replaced by <FONT FACE="Courier New, Courier, monospace">dots_max</FONT>. |
---|
| 938 | (<FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 939 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Every |
---|
[553] | 940 | cloud droplet has now an own weighting factor and can be deleted |
---|
| 941 | due to collisions. Condensation and collision of cloud droplets |
---|
[557] | 942 | are adjusted accordingly. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Collision |
---|
[553] | 943 | efficiency for large cloud droplets has changed according to table |
---|
[557] | 944 | of Rogers and Yau. (<FONT FACE="Courier New, Courier, monospace">collision_efficiency</FONT>)</P> |
---|
| 945 | </TD> |
---|
| 946 | <TD WIDTH=393> |
---|
| 947 | <P>advec_particles, collision_efficiency, init_3d_model, |
---|
| 948 | init_pegrid, modules</P> |
---|
| 949 | </TD> |
---|
| 950 | </TR> |
---|
| 951 | <TR> |
---|
| 952 | <TD WIDTH=37> |
---|
| 953 | <P><BR> |
---|
| 954 | </P> |
---|
| 955 | </TD> |
---|
| 956 | <TD WIDTH=56> |
---|
| 957 | <P><BR> |
---|
| 958 | </P> |
---|
| 959 | </TD> |
---|
| 960 | <TD WIDTH=68> |
---|
| 961 | <P><BR> |
---|
| 962 | </P> |
---|
| 963 | </TD> |
---|
| 964 | <TD WIDTH=62> |
---|
| 965 | <P><BR> |
---|
| 966 | </P> |
---|
| 967 | </TD> |
---|
| 968 | <TD WIDTH=36> |
---|
| 969 | <P>B</P> |
---|
| 970 | </TD> |
---|
| 971 | <TD WIDTH=517> |
---|
| 972 | <P>Bugfix for generating serial jobs. (<B>subjob</B>)<BR><BR>Bugfix: |
---|
[553] | 973 | index problem concerning gradient_level indices removed. |
---|
[557] | 974 | (<FONT FACE="Courier New, Courier, monospace">header</FONT>)<BR><BR>Dimension |
---|
| 975 | of array <FONT FACE="Courier New, Courier, monospace">stat</FONT> |
---|
[553] | 976 | in cascade change to prevent type problems with mpi2 libraries. |
---|
[557] | 977 | (<FONT FACE="Courier New, Courier, monospace">poisfft_hybrid</FONT>)<BR><BR>Loop |
---|
[553] | 978 | was split to make runs reproducible when using ifort compiler. |
---|
[557] | 979 | (<FONT FACE="Courier New, Courier, monospace">disturb_field</FONT>)<BR><BR>Bugfix: |
---|
| 980 | exchange of ghost points for <FONT FACE="Courier New, Courier, monospace">prho</FONT> |
---|
| 981 | included. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)<BR><BR>Bugfix |
---|
[553] | 982 | in calculation of time-averaged surface heatfluxes. |
---|
[557] | 983 | (<FONT FACE="Courier New, Courier, monospace">sum_up_3d_data</FONT>)<BR><BR>Bugfix |
---|
[553] | 984 | in calculation of precipitation_rate. |
---|
[557] | 985 | (<FONT FACE="Courier New, Courier, monospace">calc_precipitation</FONT>)<BR><BR>Bugfix: |
---|
[553] | 986 | initial data assignments to some dvrp arrays changed due to error |
---|
[557] | 987 | messages from gfortran compiler. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Bugfix |
---|
[553] | 988 | in calculation of cloud droplet velocity. |
---|
[557] | 989 | (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix |
---|
[553] | 990 | in transfer of particles at south/left edge. |
---|
[557] | 991 | (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix |
---|
| 992 | in calculation of collision efficiency. (<FONT FACE="Courier New, Courier, monospace">collision_efficiency</FONT>)</P> |
---|
| 993 | </TD> |
---|
| 994 | <TD WIDTH=393> |
---|
| 995 | <P>advec_particles, calc_precipitation, collision_efficiency, |
---|
[553] | 996 | disturb_field, header, modules, poisfft_hybrid, subjob, |
---|
[557] | 997 | sum_up_3d_data, time_integration</P> |
---|
| 998 | </TD> |
---|
| 999 | </TR> |
---|
| 1000 | <TR> |
---|
| 1001 | <TD WIDTH=37> |
---|
| 1002 | <P>23/09/09</P> |
---|
| 1003 | </TD> |
---|
| 1004 | <TD WIDTH=56> |
---|
| 1005 | <P>SR</P> |
---|
| 1006 | </TD> |
---|
| 1007 | <TD WIDTH=68> |
---|
| 1008 | <P>392</P> |
---|
| 1009 | </TD> |
---|
| 1010 | <TD WIDTH=62> |
---|
| 1011 | <P>3.7</P> |
---|
| 1012 | </TD> |
---|
| 1013 | <TD WIDTH=36> |
---|
| 1014 | <P>N</P> |
---|
| 1015 | </TD> |
---|
| 1016 | <TD WIDTH=517> |
---|
| 1017 | <P><B>Most important changes:</B> atmosphere-ocean coupling has |
---|
[553] | 1018 | been improved and steering of dvr-software is more user-friendly |
---|
| 1019 | now. Beside that, the release contains a lot of optimizations, |
---|
| 1020 | changes, and bugfixes which have accumulated over the last |
---|
[557] | 1021 | months.<BR><BR>The atmosphere-ocean coupling allows to use |
---|
[553] | 1022 | independent precursor runs in order to account for different |
---|
| 1023 | spin-up times. The time when coupling has to be started is given |
---|
[557] | 1024 | by new inipar parameter <FONT FACE="Courier New, Courier, monospace">coupling_start_time</FONT>. |
---|
| 1025 | The precursor ocean run has to be started using new <B>mrun</B> |
---|
| 1026 | option "<FONT FACE="Courier New, Courier, monospace">-y</FONT>" |
---|
| 1027 | in order to add the appendix "<FONT FACE="Courier New, Courier, monospace">_O</FONT>" |
---|
| 1028 | to all output files. (<FONT FACE="Courier New, Courier, monospace">check_for_restart</FONT>, |
---|
| 1029 | <FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1030 | <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1031 | <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, |
---|
| 1032 | <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, |
---|
| 1033 | <FONT FACE="Courier New, Courier, monospace">data_output_ptseries</FONT>, |
---|
| 1034 | <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, |
---|
| 1035 | <FONT FACE="Courier New, Courier, monospace">data_output_tseries</FONT>, |
---|
| 1036 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1037 | <FONT FACE="Courier New, Courier, monospace">init_coupling</FONT>, |
---|
| 1038 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, <FONT FACE="Courier New, Courier, monospace">mrun</FONT>, |
---|
| 1039 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1040 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1041 | <FONT FACE="Courier New, Courier, monospace">surface_coupler</FONT>, |
---|
| 1042 | <FONT FACE="Courier New, Courier, monospace">time_integration</FONT>, |
---|
| 1043 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Clipping |
---|
[553] | 1044 | of dvrp output implemented. Default colourtable for particles |
---|
| 1045 | implemented, particle attributes (color, dvrp_size) can be set |
---|
[557] | 1046 | with new parameters <FONT FACE="Courier New, Courier, monospace">particle_color</FONT>, |
---|
| 1047 | <FONT FACE="Courier New, Courier, monospace">particle_dvrpsize</FONT>, |
---|
| 1048 | <FONT FACE="Courier New, Courier, monospace">color_interval</FONT>, |
---|
| 1049 | <FONT FACE="Courier New, Courier, monospace">dvrpsize_interval</FONT>. |
---|
[553] | 1050 | Slicer attributes (dvrp) are set with new routine |
---|
[557] | 1051 | <FONT FACE="Courier New, Courier, monospace">set_slicer_attributes_dvrp</FONT> |
---|
| 1052 | and are controlled with existing parameters <FONT FACE="Courier New, Courier, monospace">slicer_range_limits</FONT>. |
---|
| 1053 | (<FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>, |
---|
| 1054 | <FONT FACE="Courier New, Courier, monospace">data_output_dvrp</FONT>, |
---|
| 1055 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1056 | <FONT FACE="Courier New, Courier, monospace">set_slicer_attributes_dvrp</FONT>, |
---|
| 1057 | <FONT FACE="Courier New, Courier, monospace">user_data_output_dvrp</FONT>)<BR><BR>Polygon |
---|
[553] | 1058 | reduction for topography and ground plate isosurface. Reduction |
---|
| 1059 | level for buildings can be chosen with parameter cluster_size. |
---|
[557] | 1060 | (<FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>)<BR><BR>Variables |
---|
| 1061 | <FONT FACE="Courier New, Courier, monospace">bc_lr</FONT> / <FONT FACE="Courier New, Courier, monospace">bc_ns</FONT> |
---|
[553] | 1062 | in most subroutines replaced by LOGICAL variables |
---|
[557] | 1063 | <FONT FACE="Courier New, Courier, monospace">bc_lr_cyc</FONT>,<BR><FONT FACE="Courier New, Courier, monospace">bc_ns_cyc</FONT> |
---|
[553] | 1064 | for speed optimization. This gives a significant speedup of more |
---|
[557] | 1065 | than 10%. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1066 | <FONT FACE="Courier New, Courier, monospace">diffusion_u</FONT>, |
---|
| 1067 | <FONT FACE="Courier New, Courier, monospace">diffusion_v</FONT>, |
---|
| 1068 | <FONT FACE="Courier New, Courier, monospace">diffusion_w</FONT>, |
---|
| 1069 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Scripts |
---|
| 1070 | have been adapted for machine lck (Yonsei Univ.). (<FONT FACE="Courier New, Courier, monospace">mrun</FONT>, |
---|
| 1071 | <FONT FACE="Courier New, Courier, monospace">mbuild</FONT>, |
---|
| 1072 | <FONT FACE="Courier New, Courier, monospace">subjob</FONT>)<BR><BR>Additional |
---|
[553] | 1073 | timestep criterion in case of simulations with plant canopy. |
---|
[557] | 1074 | (<FONT FACE="Courier New, Courier, monospace">timestep</FONT>)<BR><BR>Check |
---|
| 1075 | for illegal entries in <FONT FACE="Courier New, Courier, monospace">section_xy</FONT>|<FONT FACE="Courier New, Courier, monospace">xz</FONT>|<FONT FACE="Courier New, Courier, monospace">yz</FONT> |
---|
| 1076 | that exceed <FONT FACE="Courier New, Courier, monospace">nz+1</FONT>|<FONT FACE="Courier New, Courier, monospace">ny+1</FONT>|<FONT FACE="Courier New, Courier, monospace">nx+1</FONT>. |
---|
| 1077 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>External |
---|
| 1078 | pressure gradient can be used as driving force. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1079 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1080 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, |
---|
| 1081 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1082 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1083 | <FONT FACE="Courier New, Courier, monospace">prognostic_equations</FONT>, |
---|
| 1084 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1085 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>New |
---|
| 1086 | topography case '<I>single_street_canyon</I>'. (<FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1087 | <FONT FACE="Courier New, Courier, monospace">init_grid</FONT>, |
---|
| 1088 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1089 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1090 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1091 | <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT>, |
---|
| 1092 | <FONT FACE="Courier New, Courier, monospace">user_header</FONT>, |
---|
| 1093 | <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, |
---|
| 1094 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Option |
---|
| 1095 | to predefine a target bulk velocity for <FONT FACE="Courier New, Courier, monospace">conserve_volume_flow</FONT>. |
---|
| 1096 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1097 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1098 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, |
---|
| 1099 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1100 | <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1101 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1102 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Option |
---|
| 1103 | for user defined 2D data output in xy cross sections at z=<FONT FACE="Courier New, Courier, monospace">nzb</FONT>+1. |
---|
| 1104 | (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1105 | <FONT FACE="Courier New, Courier, monospace">user_data_output_2d</FONT>)<BR><BR>xy |
---|
[553] | 1106 | cross section output of surface heatfluxes (sensible and latent). |
---|
[557] | 1107 | (<FONT FACE="Courier New, Courier, monospace">average_3d_data</FONT>, |
---|
| 1108 | <FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1109 | <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1110 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1111 | <FONT FACE="Courier New, Courier, monospace">read_3d_binary</FONT>, |
---|
| 1112 | <FONT FACE="Courier New, Courier, monospace">sum_up_3d_data</FONT>, |
---|
| 1113 | <FONT FACE="Courier New, Courier, monospace">write_3d_binary</FONT>)</P> |
---|
| 1114 | </TD> |
---|
| 1115 | <TD WIDTH=393> |
---|
| 1116 | <P>average_3d_data, check_for_restart, check_parameters, |
---|
[553] | 1117 | data_output_2d, data_output_3d, data_output_dvrp, |
---|
| 1118 | data_output_profiles, data_output_ptseries, data_output_spectra, |
---|
| 1119 | data_output_tseries, diffusion_u, diffusion_v, diffusion_w, |
---|
| 1120 | init_coupling, init_dvrp, init_grid, init_3d_model, header, |
---|
| 1121 | mbuild, modules, mrun, package_parin, parin, prognostic_equations, |
---|
| 1122 | read_3d_binary, read_var_list, subjob, sum_up_3d_data, |
---|
| 1123 | surface_coupler, timestep, time_integration, |
---|
| 1124 | user_check_parameters, user_data_output_2d, user_data_output_dvrp, |
---|
[557] | 1125 | user_header, user_init_grid, write_3d_binary, write_var_list<BR><BR><B>new:</B> |
---|
| 1126 | set_particle_attributes, set_slicer_attributes_dvrp</P> |
---|
| 1127 | </TD> |
---|
| 1128 | </TR> |
---|
| 1129 | <TR> |
---|
| 1130 | <TD WIDTH=37> |
---|
| 1131 | <P><BR> |
---|
| 1132 | </P> |
---|
| 1133 | </TD> |
---|
| 1134 | <TD WIDTH=56> |
---|
| 1135 | <P><BR> |
---|
| 1136 | </P> |
---|
| 1137 | </TD> |
---|
| 1138 | <TD WIDTH=68> |
---|
| 1139 | <P><BR> |
---|
| 1140 | </P> |
---|
| 1141 | </TD> |
---|
| 1142 | <TD WIDTH=62> |
---|
| 1143 | <P><BR> |
---|
| 1144 | </P> |
---|
| 1145 | </TD> |
---|
| 1146 | <TD WIDTH=36> |
---|
| 1147 | <P>C</P> |
---|
| 1148 | </TD> |
---|
| 1149 | <TD WIDTH=517> |
---|
| 1150 | <P>Output of messages replaced by message handling routine. |
---|
| 1151 | (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, |
---|
| 1152 | <FONT FACE="Courier New, Courier, monospace">advec_s_bc</FONT>, |
---|
| 1153 | <FONT FACE="Courier New, Courier, monospace">buoyancy</FONT>, |
---|
| 1154 | <FONT FACE="Courier New, Courier, monospace">calc_spectra</FONT>, |
---|
| 1155 | <FONT FACE="Courier New, Courier, monospace">check_for_restart</FONT>, |
---|
| 1156 | <FONT FACE="Courier New, Courier, monospace">check_open</FONT>, |
---|
| 1157 | <FONT FACE="Courier New, Courier, monospace">coriolis</FONT>, |
---|
| 1158 | <FONT FACE="Courier New, Courier, monospace">cpu_log</FONT>, |
---|
| 1159 | <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1160 | <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, |
---|
| 1161 | <FONT FACE="Courier New, Courier, monospace">data_output_dvrp</FONT>, |
---|
| 1162 | <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, |
---|
| 1163 | <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, |
---|
| 1164 | <FONT FACE="Courier New, Courier, monospace">fft_xy</FONT>, |
---|
| 1165 | <FONT FACE="Courier New, Courier, monospace">flow_statistics</FONT>, |
---|
| 1166 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1167 | <FONT FACE="Courier New, Courier, monospace">init_1d_model</FONT>, |
---|
| 1168 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>, |
---|
| 1169 | <FONT FACE="Courier New, Courier, monospace">init_dvrp</FONT>, |
---|
| 1170 | <FONT FACE="Courier New, Courier, monospace">init_grid</FONT>, |
---|
| 1171 | <FONT FACE="Courier New, Courier, monospace">init_particles</FONT>, |
---|
| 1172 | <FONT FACE="Courier New, Courier, monospace">init_pegrid</FONT>, |
---|
| 1173 | <FONT FACE="Courier New, Courier, monospace">netcdf</FONT>, <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1174 | <FONT FACE="Courier New, Courier, monospace">plant_canopy_model</FONT>, |
---|
| 1175 | <FONT FACE="Courier New, Courier, monospace">poisfft_hybrid</FONT>, |
---|
| 1176 | <FONT FACE="Courier New, Courier, monospace">poismg</FONT>, |
---|
| 1177 | <FONT FACE="Courier New, Courier, monospace">read_3d_binary</FONT>, |
---|
| 1178 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1179 | <FONT FACE="Courier New, Courier, monospace">surface_coupler</FONT>, |
---|
| 1180 | <FONT FACE="Courier New, Courier, monospace">temperton_fft</FONT>, |
---|
| 1181 | <FONT FACE="Courier New, Courier, monospace">timestep</FONT>, |
---|
| 1182 | <FONT FACE="Courier New, Courier, monospace">user_actions</FONT>, |
---|
| 1183 | <FONT FACE="Courier New, Courier, monospace">user_data_output_dvrp</FONT>, |
---|
| 1184 | <FONT FACE="Courier New, Courier, monospace">user_dvrp_coltab</FONT>, |
---|
| 1185 | <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, |
---|
| 1186 | <FONT FACE="Courier New, Courier, monospace">user_init_plant_canopy</FONT>, |
---|
| 1187 | <FONT FACE="Courier New, Courier, monospace">user_parin</FONT>, |
---|
| 1188 | <FONT FACE="Courier New, Courier, monospace">user_read_restart_data</FONT>, |
---|
| 1189 | <FONT FACE="Courier New, Courier, monospace">user_spectra</FONT>)<BR><BR>Output |
---|
[553] | 1190 | of NetCDF messages with aid of message handling routine. |
---|
[557] | 1191 | (<FONT FACE="Courier New, Courier, monospace">check_open</FONT>, |
---|
| 1192 | <FONT FACE="Courier New, Courier, monospace">close_file</FONT>, |
---|
| 1193 | <FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1194 | <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>, |
---|
| 1195 | <FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, |
---|
| 1196 | <FONT FACE="Courier New, Courier, monospace">data_output_ptseries</FONT>, |
---|
| 1197 | <FONT FACE="Courier New, Courier, monospace">data_output_spectra</FONT>, |
---|
| 1198 | <FONT FACE="Courier New, Courier, monospace">data_output_tseries</FONT>, |
---|
| 1199 | <FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>__lcmuk |
---|
[553] | 1200 | changed to __lc to avoid problems with Intel compiler on sgi-ice. |
---|
[557] | 1201 | (<FONT FACE="Courier New, Courier, monospace">poisfft</FONT>)<BR><BR>For |
---|
[553] | 1202 | extended NetCDF files, the updated title attribute includes an |
---|
[557] | 1203 | update of time_average_text where appropriate. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>In |
---|
[553] | 1204 | case of restart runs without extension, initial profiles are not |
---|
| 1205 | written to NetCDF-file anymore. So far, time axis always started |
---|
[557] | 1206 | at t=0. (<FONT FACE="Courier New, Courier, monospace">data_output_profiles</FONT>, |
---|
| 1207 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>, |
---|
| 1208 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1209 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">initializing_actions</FONT>='<I>read_data_for_recycling</I>' |
---|
| 1210 | renamed to '<I>cyclic_fill</I>'. A cyclic fill can now <BR>be used |
---|
| 1211 | independent of <FONT FACE="Courier New, Courier, monospace">turbulent_inflow</FONT>. |
---|
| 1212 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1213 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1214 | <FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>2 |
---|
| 1215 | NetCDF error numbers changed. (<FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>)<BR><BR>A |
---|
[553] | 1216 | link to the webspage appendix_a.html is printed for further |
---|
| 1217 | information about possible reasons of the error that appeared. |
---|
[557] | 1218 | (message)<BR><BR>Temperature gradient criterion for estimating the |
---|
[553] | 1219 | boundary layer height replaced by the gradient criterion of |
---|
[557] | 1220 | Sullivan et al. (1998). (<FONT FACE="Courier New, Courier, monospace">flow_statistics</FONT>)<BR><BR>NetCDF |
---|
[553] | 1221 | unit attribute in timeseries output in case of statistic regions |
---|
[557] | 1222 | added. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>Maximum |
---|
[553] | 1223 | number of tails is calculated from maximum number of particles and |
---|
[557] | 1224 | <FONT FACE="Courier New, Courier, monospace">skip_particles_for_tail</FONT>. |
---|
| 1225 | (<FONT FACE="Courier New, Courier, monospace">init_particles</FONT>)<BR><BR>Value |
---|
| 1226 | of <FONT FACE="Courier New, Courier, monospace">vertical_particle_advection</FONT> |
---|
| 1227 | is allowed to differ for each particle group. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, |
---|
| 1228 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, |
---|
| 1229 | <FONT FACE="Courier New, Courier, monospace">modules</FONT>) |
---|
| 1230 | <BR><BR>First constant in array <FONT FACE="Courier New, Courier, monospace">den</FONT> |
---|
| 1231 | also defined as type double. (<FONT FACE="Courier New, Courier, monospace">eqn_state_seawater</FONT>)<BR><BR>Parameter |
---|
| 1232 | <FONT FACE="Courier New, Courier, monospace">dvrp_psize</FONT> |
---|
| 1233 | moved from <FONT FACE="Courier New, Courier, monospace">particles_par</FONT> |
---|
| 1234 | to <FONT FACE="Courier New, Courier, monospace">dvrp_graphics_par</FONT>. |
---|
| 1235 | (<FONT FACE="Courier New, Courier, monospace">package_parin</FONT>)<BR><BR><FONT FACE="Courier New, Courier, monospace">topography_grid_convention</FONT> |
---|
| 1236 | moved from <FONT FACE="Courier New, Courier, monospace">userpar</FONT> |
---|
| 1237 | to <FONT FACE="Courier New, Courier, monospace">inipar</FONT> |
---|
| 1238 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>, |
---|
| 1239 | <FONT FACE="Courier New, Courier, monospace">header</FONT>, <FONT FACE="Courier New, Courier, monospace">parin</FONT>, |
---|
| 1240 | <FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1241 | <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT>, |
---|
| 1242 | <FONT FACE="Courier New, Courier, monospace">user_header</FONT>, |
---|
| 1243 | <FONT FACE="Courier New, Courier, monospace">user_init_grid</FONT>, |
---|
| 1244 | <FONT FACE="Courier New, Courier, monospace">user_parin</FONT>, |
---|
| 1245 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Default |
---|
| 1246 | value of <FONT FACE="Courier New, Courier, monospace">grid_matching</FONT> |
---|
| 1247 | changed to '<I>strict</I>'. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Adjustments |
---|
[553] | 1248 | for runs on lcxt4 (necessary due to a software update on CRAY) and |
---|
[557] | 1249 | for coupled runs on ibmy. (<FONT FACE="Courier New, Courier, monospace">mrun</FONT>, |
---|
| 1250 | <FONT FACE="Courier New, Courier, monospace">subjob</FONT>)</P> |
---|
| 1251 | </TD> |
---|
| 1252 | <TD WIDTH=393> |
---|
| 1253 | <P>advec_particles, advec_s_bc, buoyancy, calc_spectra, |
---|
[553] | 1254 | check_for_restart, check_open, check_parameters, close_file, |
---|
| 1255 | coriolis, cpu_log, data_output_2d, data_output_3d, |
---|
| 1256 | data_output_dvrp, data_output_profiles, data_output_ptseries, |
---|
| 1257 | data_output_spectra, data_output_tseries, eqn_state_seawater, |
---|
| 1258 | fft_xy, flow_statistics, header, init_1d_model, init_3d_model, |
---|
| 1259 | init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, |
---|
| 1260 | netcdf, package_parin, parin, plant_canopy_model, poisfft, |
---|
| 1261 | poisfft_hybrid, poismg, read_3d_binary, read_var_list, subjob, |
---|
| 1262 | surface_coupler, temperton_fft, timestep, |
---|
| 1263 | user_actions,user_check_parameters, user_data_output_dvrp, |
---|
| 1264 | user_dvrp_coltab, user_header, user_init_grid, |
---|
| 1265 | user_init_plant_canopy, user_parin, user_read_restart_data, |
---|
| 1266 | user_spectra, write_var_list |
---|
[557] | 1267 | </P> |
---|
| 1268 | </TD> |
---|
| 1269 | </TR> |
---|
| 1270 | <TR> |
---|
| 1271 | <TD WIDTH=37> |
---|
| 1272 | <P><BR> |
---|
| 1273 | </P> |
---|
| 1274 | </TD> |
---|
| 1275 | <TD WIDTH=56> |
---|
| 1276 | <P><BR> |
---|
| 1277 | </P> |
---|
| 1278 | </TD> |
---|
| 1279 | <TD WIDTH=68> |
---|
| 1280 | <P><BR> |
---|
| 1281 | </P> |
---|
| 1282 | </TD> |
---|
| 1283 | <TD WIDTH=62> |
---|
| 1284 | <P><BR> |
---|
| 1285 | </P> |
---|
| 1286 | </TD> |
---|
| 1287 | <TD WIDTH=36> |
---|
| 1288 | <P>B</P> |
---|
| 1289 | </TD> |
---|
| 1290 | <TD WIDTH=517> |
---|
| 1291 | <P>Bugfix: Initial hydrostatic pressure profile in case of ocean |
---|
| 1292 | runs is now calculated in 5 iteration steps. (<FONT FACE="Courier New, Courier, monospace">init_ocean</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1293 | wrong sign in buoyancy production of ocean part in case of not |
---|
[557] | 1294 | using the reference density (only in 3D routine <FONT FACE="Courier New, Courier, monospace">production_e</FONT>). |
---|
| 1295 | (<FONT FACE="Courier New, Courier, monospace">production_e</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1296 | output of averaged 2d/3d quantities requires that an avaraging |
---|
| 1297 | interval has been set, respective error message is included. |
---|
[557] | 1298 | (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>Bugfix: |
---|
| 1299 | Output on unit 14 only if requested by <FONT FACE="Courier New, Courier, monospace">write_binary</FONT>. |
---|
| 1300 | (<FONT FACE="Courier New, Courier, monospace">user_last_actions</FONT>)<BR><BR>Bugfix |
---|
| 1301 | to avoid zero division by <FONT FACE="Courier New, Courier, monospace">km_neutral</FONT>. |
---|
| 1302 | (<FONT FACE="Courier New, Courier, monospace">production_e</FONT>)<BR><BR>Bugfix |
---|
[553] | 1303 | for extended NetCDF files: In order to avoid 'data mode' errors if |
---|
| 1304 | updated attributes are larger than their original size, |
---|
[557] | 1305 | <FONT FACE="Courier New, Courier, monospace">NF90_PUT_ATT</FONT> |
---|
| 1306 | is called in 'define mode' enclosed by <FONT FACE="Courier New, Courier, monospace">NF90_REDEF</FONT> |
---|
| 1307 | and <FONT FACE="Courier New, Courier, monospace">NF90_ENDDEF</FONT> |
---|
[553] | 1308 | calls. This implies a possible performance loss; an alternative |
---|
| 1309 | strategy would be to ensure equal attribute size in a job chain. |
---|
[557] | 1310 | (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1311 | correction of initial volume flow for non-flat topography. |
---|
[557] | 1312 | (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Bugfix: |
---|
| 1313 | zero initialization of arrays within buildings for '<I>cyclic_fill</I>'. |
---|
| 1314 | (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Bugfix: |
---|
| 1315 | <FONT FACE="Courier New, Courier, monospace">to_be_resorted</FONT> |
---|
| 1316 | => <FONT FACE="Courier New, Courier, monospace">s_av</FONT> for |
---|
| 1317 | time-averaged scalars. (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>, |
---|
| 1318 | <FONT FACE="Courier New, Courier, monospace">data_output_3d</FONT>)<BR><BR>Bugfix: |
---|
| 1319 | avoid that <FONT FACE="Courier New, Courier, monospace">ngp_2dh_s_inner</FONT> |
---|
| 1320 | becomes zero. (<FONT FACE="Courier New, Courier, monospace">init_3_model</FONT>)<BR><BR>Typographical |
---|
| 1321 | error: unit of wpt in dots_unit. (<FONT FACE="Courier New, Courier, monospace">modules</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1322 | error in check, if particles moved further than one subdomain |
---|
| 1323 | length. This check must not be applied for newly released |
---|
[557] | 1324 | particles. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>)<BR><BR>Bugfix: |
---|
| 1325 | several tail counters are initialized, <FONT FACE="Courier New, Courier, monospace">particle_tail_coordinates</FONT> |
---|
[553] | 1326 | is only written to file if its third index is > 0, arrays for |
---|
| 1327 | tails are allocated with a minimum size of 10 tails if there is no |
---|
[557] | 1328 | tail initially. (<FONT FACE="Courier New, Courier, monospace">advec_particles</FONT>, |
---|
| 1329 | <FONT FACE="Courier New, Courier, monospace">init_particles</FONT>)<BR><BR>Bugfix: |
---|
| 1330 | pressure included for profile output. (<FONT FACE="Courier New, Courier, monospace">check_parameters</FONT>)<BR><BR>Bugfix: |
---|
| 1331 | Type of <FONT FACE="Courier New, Courier, monospace">count</FONT> |
---|
| 1332 | and <FONT FACE="Courier New, Courier, monospace">count_rate</FONT> |
---|
| 1333 | changed to default <FONT FACE="Courier New, Courier, monospace">INTEGER</FONT> |
---|
| 1334 | on NEC machines. (<FONT FACE="Courier New, Courier, monospace">cpu_log</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1335 | output of particle time series only if particle advection is |
---|
[557] | 1336 | switched on. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)<BR><BR>Bugfix: |
---|
| 1337 | qsws was calculated in case of <FONT FACE="Courier New, Courier, monospace">constant |
---|
| 1338 | heatflux</FONT> = <FONT FACE="Courier New, Courier, monospace">.FALSE.</FONT>. |
---|
| 1339 | (<FONT FACE="Courier New, Courier, monospace">prandtl_fluxes</FONT>)<BR><BR>Bugfix: |
---|
[553] | 1340 | averaging along z is not allowed for 2d quantities (e.g. u* and |
---|
[557] | 1341 | z0). (<FONT FACE="Courier New, Courier, monospace">data_output_2d</FONT>)<BR><BR>Typographical |
---|
| 1342 | errors. (<FONT FACE="Courier New, Courier, monospace">netcdf</FONT>)<BR><BR>If |
---|
[553] | 1343 | the inversion height calculated by the prerun is zero, |
---|
| 1344 | inflow_damping_height must be explicitly specified. |
---|
[557] | 1345 | (<FONT FACE="Courier New, Courier, monospace">init_3d_model</FONT>)<BR><BR>Small |
---|
| 1346 | bugfix concerning 3d 64bit netcdf output format. (<FONT FACE="Courier New, Courier, monospace">header</FONT>)<BR><BR>Bugfix: |
---|
| 1347 | <FONT FACE="Courier New, Courier, monospace">dt_fixed</FONT> |
---|
[553] | 1348 | removed from the restart file, because otherwise, no change from a |
---|
| 1349 | fixed to a variable timestep would be possible in restart runs. |
---|
[557] | 1350 | (<FONT FACE="Courier New, Courier, monospace">read_var_list</FONT>, |
---|
| 1351 | <FONT FACE="Courier New, Courier, monospace">write_var_list</FONT>)<BR><BR>Bugfix: |
---|
| 1352 | initial setting of <FONT FACE="Courier New, Courier, monospace">time_coupling</FONT> |
---|
| 1353 | in coupled restart runs. (<FONT FACE="Courier New, Courier, monospace">time_integration</FONT>)</P> |
---|
| 1354 | </TD> |
---|
| 1355 | <TD WIDTH=393> |
---|
| 1356 | <P>advec_particles, check_parameters, cpu_log, data_output_2d, |
---|
[553] | 1357 | data_output_3d, header, init_3d_model, init_particles, init_ocean, |
---|
| 1358 | modules, netcdf, prandtl_fluxes, production_e, read_var_list, |
---|
[557] | 1359 | time_integration, user_last_actions, write_var_list</P> |
---|
| 1360 | </TD> |
---|
| 1361 | </TR> |
---|
| 1362 | <TR> |
---|
| 1363 | <TD WIDTH=37> |
---|
| 1364 | <P>02/02/09</P> |
---|
| 1365 | </TD> |
---|
| 1366 | <TD WIDTH=56> |
---|
| 1367 | <P>SR</P> |
---|
| 1368 | </TD> |
---|
| 1369 | <TD WIDTH=68> |
---|
| 1370 | <P>228</P> |
---|
| 1371 | </TD> |
---|
| 1372 | <TD WIDTH=62> |
---|
| 1373 | <P>3.6</P> |
---|
| 1374 | </TD> |
---|
| 1375 | <TD WIDTH=36> |
---|
| 1376 | <P>N</P> |
---|
| 1377 | </TD> |
---|
| 1378 | <TD WIDTH=517> |
---|
| 1379 | <P>This release contains further additions, changes, and bugfixes |
---|
[553] | 1380 | for the SGI-ICE system, as well as important changes like the |
---|
| 1381 | splitting of the user-interface into single files, a complete |
---|
| 1382 | revision of the pre-compiling mechanism allowing to use different |
---|
| 1383 | make-depositories simultaneously, and a revision of the |
---|
| 1384 | reading-mechanism from restart files, which has no more |
---|
| 1385 | restrictions in case that the previous and current run have |
---|
| 1386 | different domain/subdomain sizes. A new handling of all kind of |
---|
| 1387 | output messages is introduced with this release and will be |
---|
[557] | 1388 | applied to all existing messages within the next releases.<BR><BR><B>New |
---|
| 1389 | features are:</B><BR><BR>Restart runs on SGI-ICE are working. |
---|
| 1390 | (mrun)<BR>2d-decomposition is default on SGI-ICE systems. |
---|
| 1391 | (init_pegrid)<BR><BR>Ocean-atmosphere coupling realized with |
---|
[553] | 1392 | MPI-1. mrun adjusted for this case (-Y option). Check that PALM is |
---|
[557] | 1393 | called with <FONT FACE="Courier New, Courier, monospace">mrun</FONT>-option |
---|
| 1394 | "<I>-K parallel</I>" for coupling. Adjustments in <FONT FACE="Courier New, Courier, monospace">mrun</FONT>, |
---|
| 1395 | <FONT FACE="Courier New, Courier, monospace">mbuild</FONT>, and |
---|
| 1396 | <FONT FACE="Courier New, Courier, monospace">subjob</FONT> for |
---|
| 1397 | lcxt4.<BR><BR>DVRP arguments changed to single precision, mode |
---|
| 1398 | pathlines added.<BR><BR>User can add additional routines in files |
---|
| 1399 | <FONT FACE="Courier New, Courier, monospace">user_additional_routines</FONT>.<BR><BR>User |
---|
[553] | 1400 | can check user parameters and deduce further quantities in |
---|
[557] | 1401 | <FONT FACE="Courier New, Courier, monospace">user_check_parameters</FONT></P> |
---|
| 1402 | </TD> |
---|
| 1403 | <TD WIDTH=393> |
---|
| 1404 | <P>check_for_restart, check_parameters, data_output_dvrp, |
---|
[553] | 1405 | init_dvrp, init_pegrid, local_stop, modules, package_parin, palm, |
---|
[557] | 1406 | surface_coupler, timestep<BR><BR>Makefile, mbuild, mrun, |
---|
| 1407 | subjob<BR><BR><B>new:</B><BR>init_coupling, |
---|
| 1408 | user_additional_routines, user_check_parameters</P> |
---|
| 1409 | </TD> |
---|
| 1410 | </TR> |
---|
| 1411 | <TR> |
---|
| 1412 | <TD WIDTH=37> |
---|
| 1413 | <P><BR> |
---|
| 1414 | </P> |
---|
| 1415 | </TD> |
---|
| 1416 | <TD WIDTH=56> |
---|
| 1417 | <P><BR> |
---|
| 1418 | </P> |
---|
| 1419 | </TD> |
---|
| 1420 | <TD WIDTH=68> |
---|
| 1421 | <P><BR> |
---|
| 1422 | </P> |
---|
| 1423 | </TD> |
---|
| 1424 | <TD WIDTH=62> |
---|
| 1425 | <P><BR> |
---|
| 1426 | </P> |
---|
| 1427 | </TD> |
---|
| 1428 | <TD WIDTH=36> |
---|
| 1429 | <P>C</P> |
---|
| 1430 | </TD> |
---|
| 1431 | <TD WIDTH=517> |
---|
| 1432 | <P>User interface has been split into single files.<BR><BR>Type of |
---|
| 1433 | variables <FONT FACE="Courier New, Courier, monospace">count</FONT> |
---|
| 1434 | and <FONT FACE="Courier New, Courier, monospace">count_rate</FONT> |
---|
| 1435 | changed to INTEGER(8) in order to avoid "out of range" |
---|
[553] | 1436 | problems, which result in measured negative time intervals. |
---|
[557] | 1437 | (cpu_log, local_tremain, local_tremain_ini)<BR><BR>Reading |
---|
[553] | 1438 | mechanism from restart files completely revised. The |
---|
| 1439 | subdomain/total domain size is now allowed to vary arbitrarily |
---|
| 1440 | between the current and previous run. (read_var_list, |
---|
[557] | 1441 | read_3d_binary, user_read_restart_data)<BR><BR>Precompilation |
---|
| 1442 | mechanism (<FONT FACE="Courier New, Courier, monospace">mbuild</FONT>) |
---|
[553] | 1443 | completely revised: the source-tarfile remains in the source |
---|
[557] | 1444 | directory (<FONT FACE="Courier New, Courier, monospace">trunk/SOURCE</FONT>). |
---|
[553] | 1445 | One depository per block (given in the config-file) is created. |
---|
| 1446 | Always all files from the source directory are copied to the |
---|
| 1447 | respective depository. No additional file checks are done any more |
---|
| 1448 | (mrun version 2.1). The depository name used contains the |
---|
[557] | 1449 | conditions given by <FONT FACE="Courier New, Courier, monospace">mrun</FONT>-option |
---|
| 1450 | "<FONT FACE="Courier New, Courier, monospace">-K</FONT>". |
---|
| 1451 | (mbuild, mrun)<BR><BR>Output messages (including required stop of |
---|
| 1452 | execution) can now be handled with the new subroutine <FONT FACE="Courier New, Courier, monospace">message</FONT>. |
---|
[553] | 1453 | All output messages will be replaced by this routine step by step |
---|
[557] | 1454 | within the next revisions.<BR><BR>Neumann boundary condition at |
---|
| 1455 | <FONT FACE="Courier New, Courier, monospace">k=nzb</FONT> is |
---|
[553] | 1456 | explicitly set for better reading, although this has been already |
---|
[557] | 1457 | done in boundary_conds. (advec_s_bc)<BR><BR>Origin of the |
---|
[553] | 1458 | xy-coordinate system shifted from the center of the first grid |
---|
[557] | 1459 | cell (indices <FONT FACE="Courier New, Courier, monospace">i=0</FONT>, |
---|
| 1460 | <FONT FACE="Courier New, Courier, monospace">j=0</FONT>) to the |
---|
[553] | 1461 | south-left corner of this cell. (netcdf) Topography definition |
---|
[557] | 1462 | according to new user parameter <FONT FACE="Courier New, Courier, monospace">topography_grid_convention</FONT>. |
---|
| 1463 | (init_grid, modules, user_header, user_init_grid, user_parin)</P> |
---|
| 1464 | </TD> |
---|
| 1465 | <TD WIDTH=393> |
---|
| 1466 | <P>advec_s_bc, check_parameters, cpu_log, init_grid, local_stop, |
---|
[553] | 1467 | local_tremain, local_tremain_ini, modules, netcdf, read_3d_binary, |
---|
[557] | 1468 | read_var_list, user_read_restart_data<BR><BR>Makefile, mbuild, |
---|
| 1469 | mrun<BR><BR><B>removed:</B><BR>user_interface<BR><BR><B>new:</B><BR>message, |
---|
[553] | 1470 | user_3d_data_averaging, user_actions, user_advec_particles, |
---|
| 1471 | user_check_data_output, user_check_data_output_pr, |
---|
| 1472 | user_data_output_2d, user_data_output_3d, user_data_output_dvrp, |
---|
| 1473 | user_define_netcdf_grid, user_dvrp_coltab, user_header, |
---|
| 1474 | user_init_3d_model, user_init, user_init_grid, |
---|
| 1475 | user_init_particles, user_init_plant_canopy, user_last_actions, |
---|
| 1476 | user_parin, user_parin, user_particle_attributes, |
---|
[557] | 1477 | user_read_restart_data, user_spectra, user_statistics</P> |
---|
| 1478 | </TD> |
---|
| 1479 | </TR> |
---|
| 1480 | <TR> |
---|
| 1481 | <TD WIDTH=37> |
---|
| 1482 | <P><BR> |
---|
| 1483 | </P> |
---|
| 1484 | </TD> |
---|
| 1485 | <TD WIDTH=56> |
---|
| 1486 | <P><BR> |
---|
| 1487 | </P> |
---|
| 1488 | </TD> |
---|
| 1489 | <TD WIDTH=68> |
---|
| 1490 | <P><BR> |
---|
| 1491 | </P> |
---|
| 1492 | </TD> |
---|
| 1493 | <TD WIDTH=62> |
---|
| 1494 | <P><BR> |
---|
| 1495 | </P> |
---|
| 1496 | </TD> |
---|
| 1497 | <TD WIDTH=36> |
---|
| 1498 | <P>B</P> |
---|
| 1499 | </TD> |
---|
| 1500 | <TD WIDTH=517> |
---|
| 1501 | <P>Bugfix: array <FONT FACE="Courier New, Courier, monospace">d</FONT> |
---|
[553] | 1502 | is reallocated in case that multigrid is used. |
---|
[557] | 1503 | (calc_spectra)<BR><BR>Bugfixes for nonparallel execution. |
---|
[553] | 1504 | (check_for_restart, cpu_statistics, |
---|
[557] | 1505 | inflow_turbulence, timestep)<BR><BR>Size of <FONT FACE="Courier New, Courier, monospace">pf3d |
---|
| 1506 | </FONT>adjusted to the required output size (1 gridpoint less, |
---|
[553] | 1507 | along all three dimensions), because output of a subset of the |
---|
[557] | 1508 | data (<FONT FACE="Courier New, Courier, monospace">pf3d(nxa:nxe...)</FONT>) |
---|
[553] | 1509 | in the NF90_PUT_VAR statement caused segmentation fault with the |
---|
[557] | 1510 | INTEL compiler. (combine_plot_fields)<BR><BR>Bugfix: error in <FONT FACE="Courier New, Courier, monospace">zu</FONT> |
---|
| 1511 | index in case of <FONT FACE="Courier New, Courier, monospace">section_xy=-1</FONT>. |
---|
| 1512 | (header)<BR><BR>Inconsistency removed: as the thermal |
---|
[553] | 1513 | stratification is not taken into account for the evaluation of the |
---|
[557] | 1514 | wall fluxes at vertical walls, the eddy viscosity <FONT FACE="Courier New, Courier, monospace">km</FONT> |
---|
[553] | 1515 | must not be used for the evaluation of the velocity gradients |
---|
[557] | 1516 | <FONT FACE="Courier New, Courier, monospace">dudy</FONT>, <FONT FACE="Courier New, Courier, monospace">dwdy</FONT>, |
---|
| 1517 | <FONT FACE="Courier New, Courier, monospace">dvdx</FONT> and <FONT FACE="Courier New, Courier, monospace">dwdx</FONT>. |
---|
| 1518 | (production_e)<BR><BR>Bugfix in calculating <FONT FACE="Courier New, Courier, monospace">k</FONT> |
---|
| 1519 | index in case of oceans runs. (sort_particles)<BR><BR>Bugfix: no |
---|
[553] | 1520 | output of particle concentration and radius unless particles have |
---|
[557] | 1521 | been started. (data_output_2d)<BR><BR>Bugfix: reading of |
---|
| 1522 | <FONT FACE="Courier New, Courier, monospace">spectrum_x|y</FONT> |
---|
[553] | 1523 | from restart files ignored if total numbers of grid points do not |
---|
[557] | 1524 | match. (read_3d_binary)<BR><BR>Bugfix: abort in case that absolute |
---|
| 1525 | temperature is below zero. (init_cloud_physics)</P> |
---|
| 1526 | </TD> |
---|
| 1527 | <TD WIDTH=393> |
---|
| 1528 | <P>advec_particles, calc_spectra, check_for_restart, |
---|
[553] | 1529 | cpu_statistics, data_output_2d, header, inflow_turbulence, |
---|
| 1530 | init_cloud_physics, production_e, read_3d_binary, |
---|
[557] | 1531 | timestep<BR><BR>combine_plot_fields</P> |
---|
| 1532 | </TD> |
---|
| 1533 | </TR> |
---|
| 1534 | </TABLE> |
---|
| 1535 | <P><BR> <BR> |
---|
| 1536 | </P> |
---|
| 1537 | <H2><A NAME="Kapitel2.0"></A>2.0 How to change the source code |
---|
| 1538 | and how to document modifications</H2> |
---|
| 1539 | <P>Currently (Sep 23rd, 2009), only selected users are allowed to |
---|
[553] | 1540 | commit changes to the repository. Rules given below are preliminary, |
---|
[557] | 1541 | until we have switched to the "trac"-System.</P> |
---|
| 1542 | <OL> |
---|
| 1543 | <LI><P>Change source code in your current working copy. Document |
---|
| 1544 | changes in the respective file headers unter "<FONT FACE="Courier New, Courier, monospace">Current |
---|
| 1545 | revisions:</FONT>". Additionally, document all changes in a |
---|
[553] | 1546 | local file (e.g. ~/palm/current_version/CURRENT_MODIFICATIONS), |
---|
| 1547 | including the files that have been changed. Classify changes in |
---|
[557] | 1548 | three cases, new (N), changed (C), and bugfix (B). <B>Try to be as |
---|
| 1549 | short and as precise as possible in describing the changes!</B></P> |
---|
| 1550 | <LI><P>Test the changed version, unless it works sufficiently.</P> |
---|
| 1551 | <LI><P>Commit the changes to the repository<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn |
---|
| 1552 | commit -m "message string" trunk<BR></FONT><BR>where |
---|
| 1553 | "<FONT FACE="Courier New, Courier, monospace">message string</FONT>" |
---|
| 1554 | is a short, <B>meaningful</B> summary of the |
---|
| 1555 | changes.<BR><BR>Alternatively, in case that you have made quite a |
---|
[553] | 1556 | lot of changes, you can also give the contents of your file |
---|
[557] | 1557 | CURRENT_MODIFICATIONS as the log message:<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn |
---|
| 1558 | commit -F CURRENT_MODIFICATIONS trunk</FONT></P> |
---|
| 1559 | <LI><P>Enter the changes into the technical documentation (under |
---|
| 1560 | <FONT FACE="Courier New, Courier, monospace">.../trunk/DOC/tec/technical_documentation.html</FONT>).</P> |
---|
| 1561 | <LI><P>Move the change comments in the file headers from "Current |
---|
| 1562 | revisions:" to "Former revisions:". Set the current |
---|
| 1563 | svn id in front of that.<BR><BR><B>Example:</B><BR><BR><B>before |
---|
| 1564 | move:</B><BR><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1565 | Current revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1566 | -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1567 | </FONT><FONT FACE="Courier New, Courier, monospace"><B>new dummy |
---|
| 1568 | argument abcd</B></FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1569 | Former revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1570 | -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1571 | §Id: init_3d_model.f90 </FONT><FONT COLOR="#3366ff"><FONT FACE="Courier New, Courier, monospace"><B>425 |
---|
| 1572 | 2010-02-06 13:37:48Z raasch</B></FONT></FONT> <FONT FACE="Courier New, Courier, monospace">§</FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1573 | 407 2009-12-01 15:01:15Z maronga</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1574 | var_ts is replaced by dots_max </FONT><BR><BR><B>after move:</B><BR><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1575 | Current revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1576 | -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1577 | </FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1578 | Former revisions:</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1579 | -----------------</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1580 | §Id: init_3d_model.f90 425 2010-02-06 13:37:48Z raasch</FONT> <FONT FACE="Courier New, Courier, monospace">§<BR>!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1581 | </FONT><FONT COLOR="#3366ff"><FONT FACE="Courier New, Courier, monospace"><B>425 |
---|
| 1582 | 2010-02-06 13:37:48Z raasch</B></FONT></FONT><FONT FACE="Courier New, Courier, monospace"><BR>! |
---|
| 1583 | </FONT><FONT FACE="Courier New, Courier, monospace"><B>new dummy |
---|
| 1584 | argument abcd</B></FONT><BR><FONT FACE="Courier New, Courier, monospace">!</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1585 | 407 2009-12-01 15:01:15Z maronga</FONT><BR><FONT FACE="Courier New, Courier, monospace">! |
---|
| 1586 | var_ts is replaced by dots_max<BR><BR></FONT><FONT FACE="Times New Roman, Times, serif">Note |
---|
| 1587 | that the "</FONT><FONT FACE="Courier New, Courier, monospace">§</FONT><FONT FACE="Times New Roman, Times, serif">" |
---|
| 1588 | in this example should read "$", but "$" cannot |
---|
[553] | 1589 | be used here, because otherwise svn would replace these entries |
---|
[557] | 1590 | after every change to this technical documentation.</FONT></P> |
---|
| 1591 | <LI><P>Commit the changes in the technical documentation and the |
---|
| 1592 | file headers:<BR><BR> <FONT FACE="Courier New, Courier, monospace">svn |
---|
| 1593 | commit -m "last commit documented" trunk</FONT><BR><BR><BR> |
---|
| 1594 | </P> |
---|
| 1595 | </OL> |
---|
| 1596 | <H2><A NAME="Kapitel3.0"></A>3.0 Description of selected parts |
---|
| 1597 | of the model source code</H2> |
---|
| 1598 | <P>This section gives links to existing descriptions about special |
---|
[392] | 1599 | parts of the PALM code, e.g. special numerical methods that are used |
---|
| 1600 | (including mathematical background). Documents are stored in single |
---|
| 1601 | files with different formats. Some are in German (sorry for the |
---|
[557] | 1602 | inconvenience). <BR> |
---|
| 1603 | </P> |
---|
| 1604 | <UL> |
---|
| 1605 | <LI><P STYLE="margin-bottom: 0in"><A NAME="UPS"></A>upstream-spline |
---|
| 1606 | advection scheme ( <A HREF="methods/upstream_spline/ups.pdf">.pdf</A> |
---|
[553] | 1607 | , only in German) |
---|
[557] | 1608 | </P> |
---|
| 1609 | <LI><P STYLE="margin-bottom: 0in"><A NAME="Cloud_physics"></A>cloud |
---|
| 1610 | physics module ( <A HREF="methods/cloud_physics/cloud_physics.pdf">.pdf</A> |
---|
[553] | 1611 | ) |
---|
[557] | 1612 | </P> |
---|
| 1613 | <LI><P STYLE="margin-bottom: 0in"><A NAME="Bitkompression"></A>data |
---|
| 1614 | compression with <A HREF="methods/bit_compression/bit_compression.html">bit |
---|
| 1615 | shifting method</A> (only in German)</P> |
---|
| 1616 | <LI><P>Runge-Kutta time integration scheme ( <A HREF="methods/runge_kutta/runge_kutta.pdf">.pdf</A> |
---|
[553] | 1617 | , only in German) |
---|
[557] | 1618 | </P> |
---|
| 1619 | </UL> |
---|
| 1620 | <P><BR> <BR> <BR> <BR> <BR> <BR> |
---|
| 1621 | <BR> <BR> |
---|
| 1622 | </P> |
---|
| 1623 | </BODY> |
---|
| 1624 | </HTML> |
---|