ToDo-List

PALM workshop

Category	What to do?	Name
Discussion	Parameter file inconsistencies. Settings for data output are not consistent within the parameter file. For example, 3d/2d/pr output variables are explicitly declared, but timeseries are always the same (confusing for users). Also, differentiation between data_output and data_output_pr is confusing. A possible solution would be to use data_output exclusively and include profiles, e.g. for pt this then would read "pt", "pt_xy", "pt_pr", etc. I would leave this as it is. Several quantities only exist as profiles, so it don't make sense to add a _pr to all of them. It should be enough to add (better) hints in the docu. Siggi	group
Discussion	Discuss the treatment of package parameters, regarding their appearance in rrd_global and wrd_global. Discuss the general treatment / separation of inipar and d3par parameters.	Sebastian
Homepage	replace the provisional picture (showing Kelvin-Helmholtz waves) by a nicer one from an urban canopy simulation	Tobias
PALM code	Check for double-use of error numbers	Sebastian
PALM code	Clean up / extend location messages / time measurements, remove output of '--- finished' in advance mode	Farah, Matthias, Siggi
PALM code	Comment variables/parameters in declaration sections (see list at the bottom of this page)	ALL
PALM code	Known bug: W* and Z_I in the first line of the run control file don't correspond to the values in the last run control output line of the previous run.	Sebastian
PALM code	Known bug: Restart crashes in sum_up_3d_data if an _av quantity is given in the restart run NAMELIST file (_p3dr) but not in the initial run NAMELIST file (_p3d) --> Implement check?!	Sebastian
PALM code	Revise variable/dimension names and attributes in the NetCDF data input and PIDS input according to the [UC]² data policy Revised PIDS --> V1.9, renamed variables which are already implemented in PALM	Tobias
PALM code	Make use of already implemented 'long_name' attribute of variables, i.e. give possibility to assign a long_name for user defined variables	Tobias
PALM code	Make proper use of global attributes; especially do not write time average interval in title if there exists a specific attribute (time_avg) for this. I think this information in the title is quite helpful for interpreting the plot. If it is omitted in the title, we need to add this information to the plot at some other place. Siggi	Tobias
PALM code	Add georeferencing (lat/lon) and global attributes according to [UC]² data policyto NetCDF output	Tobias
PALM code	Extend plant canopy model to handle basal area (trunks, branches)	Björn
PALM code	Implement and homogenize output of cloud-physical variables derived from bulk and Lagrangian cloud physics (e.g., qc, ql, qr, lpt, pt)	Johannes
PALM code/ documentation	Change the name specific humidity to mixing ratio! We don't compute specific humidities.	Johannes
PALM code	replace CEILING function with INT or NINT where appropriate	tba
PALM code	3D output in serial mode seems to be quite different from parallel runs although RUN_CONTROL files are identical	tba
PALM code	Use of u_init (v_init) and ug (vg) not consistent in prognostic equations	tba
Scripts	Write new script to find the next unused of free error number + next free log_point number Script does not function properly. Tobias	Helge
Scripts	Finalize first version of new palmplot script (python)	Helge
Scripts	palmrun does not yet interpret variables in IC commands	Siggi
Scripts	Remove deprecated vapor scripts (already removed since r1611)	Tobias
Test suite	Design test cases for microphysic and lagrangian particles	Johannes
Test suite	Use new namelist names in parameter files	tba
Tickets	Sort tickets of component "General" into appropriate components (change title and keywords where needed, create new components where necessary), delete non-relevant tickets, add answers to FAQ	Katrin
Web docu	Restructure entire PALM docu	Farah
Web docu	Update palmrun description	Siggi
Web docu	Update links to palmrun description, remove/rename traces to mbuild, mrun, subjob	tba
Web docu	Update installation/requirements description	Helge
Web docu	Complete and check existing PALM error messages (Remaining Numbers without description: PA0149, 226, 228, 234, 245-270, 296-301, 309, 319-321, 327, 328, 330, 334-338, 460-464, UI0002; the error message itself is sufficient for many of these -> mark them in a special way?)	Sebastian
Web docu	Check consistency of parameter lists (namelist pages and alphabetical list)	Katrin
Web docu	Update links from manual to Tutorial (new: PALM seminar material)	Farah
Web docu	Revise description of timeseries output	Farah
Web docu	Update VAPOR page	Tobias
Web docu	documentation of the PIDS and of surface model (e.g. how to create drivers, or the different level-of-details)	Matthias
Web docu	automatic generation of a machine-readable list of all NAMELIST-parameters including their default values	tba

Documentation

Page (e. g. wiki/doc/app/userint)	What to do?	Name
wiki/doc/tec/1d_model	Description of 1d model
wiki/doc/tec/cloud_physics	Description of cloud physics module	Johannes
<page>	Write descriptions for exercises 6-14 (divide all exercises into Tutorial exercises and Advanced exercises), Advanced examples->Research project examples
wiki/doc/	Description of statistical methods (computation of fluxes and variances, horizontal averaging, etc.)
wiki/doc/tec/wtm	Write documentation for wind turbine parametrization code	Björn Witha
	Add additions/correction page for the Maronga et al. 2015 paper so that we can incorporate them in the next model description paper
Tutorial	Various exercises and general presentation are since long time listed as "under construction". Links have been removed for now.
	* Data visualization with VAPOR (see also comment in "Tools")
	* Data visualization with DVR
	* Exercise 6: Cumulus cloud from cloud droplets
	* Exercise 7: Ocean mixed layer
	* Exercise 8: Atmosphere-ocean coupling
	* Exercise 9: Canopy flow
	* Exercise 12: Non-cyclic boundary conditions
	* Exercise 13: Turbulence recycling
	* Exercise 14: Using DVR
	* Example: Footprints
	* Example: Stable boundary layer (GABLS3)
	* Cloud Physics up to date?

Source Code

Program parts	What to do?	Name
	develop new GUI for parameter file generation
PALM code	remove the iwp (working precision for INTEGERS), because many routines (e.g. MPI) cannot handle others than 32bit INTEGER
PALM code	code clearing and restructuring following programmer guidelines of DWD/DMI	all, Siggi
<page>	Subgrid-scale saturation fluctuation for Lagrangian cloud model	Johannes
data_output	implement output of scalar and momentum fluxes calculated by temporal EC
PALM code	Create temporary job sub-directories via mrun (does not work properly with the FORTRAN system call function) There is currently no proper solution for this. Postponed.
Example runs	Modify the "building" example run (example_building_p3d), since topography is allowed with WS-scheme	Tobias
PALM code	For reference_state='horizontal_average' round the averaged profile (e.g. 3.3 digits) to make runs repeatable	Siggi
PALM code	Avoid repeating code blocks in data_output routines and use subroutines instead
PALM code	Avoid unnecessary grid checks when using multi grid solver	??
data_output	In profile output define zu and zw only once instead of define a vertical dimension for each individual variable (e.g. zpt, zw"u, zw"v, ...)
data_output	When calculating vertical cross sections averaged along x or y, leave out topography
data_output	Do not output ghost points in masked output	Siggi
PALM code	Separate option "cyclic_fill" from restart run to avoid unwanted effects (e.g. surface heat flux value in namelist of a run using "cyclic_fill" will always be overwritten by the value used in the precursor run).	Björn / Tobias
PALM code	define dimensions of data_output, data_output_pr, etc. as variables (avoid fixed numbers in code)
PALM code	Implement a more flexible y-shift method for non-cyclic but also for cyclic runs	Simon
PALM code	Particle code: unify allocation of particle arrays within lpm_droplet_collision, lpm_droplet_condensation, ... (REAL(wp), DIMENSION(:), ALLOCATABLE or REAL(wp), DIMENSION(prt_count(k,j,i)))	Johannes
PALM code	Review summation of "1E-5_wp" in lines 164/167 in diffusivities.f90 (r2119), see ticket:393	Tobias
PALM code	for consistency reasons, implement "initial gradient" top boundary conditions for the mixing ratio too	Johannes
RRTMG coupling	allow for dry runs with RRTMG (might lead to unrealistic results if the atmosphere is considered totally dry!)	Björn
1d-model	fix 1d model to work without Coriolis force why is this required? Siggi
PALM code	allow more flexible vertical grid stretching, e.g. for having near-surface stretching, constant grid spacing above and again stretching in the free atmosphere	Sebastian
check parameters	with psolver=multigrid, check that the subdomains can be divived by 2 at least once (see documentation of the multigrid). Is this still a problem? Needs to be checked.	Siggi
Initialization	It needs to be clarified that the initial wind profile constructed by ug_surface, ug_vertical_gradient etc. describes the forcing by the geostrophic wind (pressure gradient), and at the same time depicts the initial actual-wind profile. just add better hints in docu	Siggi
palmrun	do not write message restart run initiated if the restart palmrun has failed	Siggi
NAMELISTs	it should be possible to give output levels in real coordinates (m) instead of grid level, output should then be done for the nearest grid point	Sebastian
data_output	all output checks should be done BEFORE the first time step, and not when the first output is done
Nesting output	additional output of nesting information is required (e.g. in header): for root domain: number of nested domains, name of nested domains, number of nesting levels; for each domain: position of the nest domains given in grid index number range, e.g. (20..40,10:15), also position of lower left corners in physical coordinates?
PALM code	routine global_min_max does not work for mode 'min', 'max', and 'minmax'.	Tobias
PALM code	discuss using Fortran Intrinsic Function "SUM" instead of loops as done many times in the code	all (KS)
initializing_actions	discuss use of initializing_actions='user', because its usage requires good code knowledge and the advantage over using 'set_constant_profiles' and later overwriting variables in user_init_3d_model.f90 is not clear just give better explanations in the docu. Siggi	all (KS)
PALM code	Revise Fortran NAMELIST names (e.g. &inipar --> &initialization_parameters)	Björn see r2932
PALM code	Revise vertical loops in plant-canopy model in order to get rid-off 2D-index array pch_index	Matthias
PALM code	File local_system.f90 has become redundant since SYSTEM subroutine is intrinsic. After a year of no issues with this, remove local_system calls and replace with SYSTEM calls everywhere (2018-05-22)	tba
data_output	If profiles are to be saved at t=0, save all profiles, i.e., do not use '#' character but use something like 'dopr_at_begin'.

Code performance

	define setups for scaling / benchmark runs	Björn, Siggi, Fabian
	carry out runs to determine PALM's weak/strong scaling behaviour + parallel efficiency, this might be good to be carried out during the test phase of the HLRNIV	?
	debug ex_lsm_clearsky and reincorporate it to standard test cases	Björn, Katrin

Tools

-	extend PALM grid finder for nesting configurations	Hiwi
-	tool for finding vertical grid configuration with grid stretching (maybe as part of palm_gf)	Katrin+HiWi?

Variable descriptions

Please delete entries that you have taken care of. See the attached bash script to check that you missed nothing or to update the list.

File	Line	routine, function or module	responsible	notes
advec_s_bc.f90			Siggi
	134	SUBROUTINE advec_s_bc
boundary_conds.f90			Micha
	179	SUBROUTINE boundary_conds
buoyancy.f90			Siggi
	131	SUBROUTINE buoyancy
	237	SUBROUTINE buoyancy_ij
calc_liquid_water_content.f90			Johannes
	93	SUBROUTINE calc_liquid_water_content
calc_mean_profile.f90			Farah
	82	SUBROUTINE calc_mean_profile
calc_radiation.f90			Siggi
	77	MODULE calc_radiation_mod
	104	SUBROUTINE calc_radiation
	253	SUBROUTINE calc_radiation_ij
check_for_restart.f90			Sebastian
	79	SUBROUTINE check_for_restart
check_open.f90			Siggi
	165	SUBROUTINE check_open
chem_gasphase_mod.f90			Farah → others	Coding standard..?
	1	MODULE chem_gasphase_mod
	693	SUBROUTINE initialize
	722	SUBROUTINE integrate
	776	SUBROUTINE fun
	796	SUBROUTINE kppsolve
	808	SUBROUTINE kppdecomp
	845	REAL(kind=dp)FUNCTION wlamch
	887	SUBROUTINE jac_sp
	916	elemental REAL(kind=dp)FUNCTION k_arr
	929	SUBROUTINE update_rconst
	944	REAL(kind=dp)FUNCTION arr2
	950	SUBROUTINE initialize_kpp_ctrl
	1002	SUBROUTINE error_output
	1014	SUBROUTINE wcopy
	1050	SUBROUTINE wscal
	1112	SUBROUTINE waxpy
	1145	SUBROUTINE rosenbrock
	1437	SUBROUTINE ros_errormsg
	1477	SUBROUTINE ros_integrator
	1680	REAL
	1713	SUBROUTINE ros_funtimederivative
	1737	SUBROUTINE ros_preparematrix
	1818	SUBROUTINE ros_decomp
	1843	SUBROUTINE ros_solve
	2290	SUBROUTINE funtemplate
	2309	SUBROUTINE jactemplate
	2347	SUBROUTINE chem_gasphase_integrate
	2416	SUBROUTINE fill_temp
chemistry_model_mod.f90			Farah → others
	119	MODULE chemistry_model_mod
	284	SUBROUTINE chem_boundary_conds
	718	SUBROUTINE set_const_initial_values
	889	SUBROUTINE chem_integrate_ij
	987	SUBROUTINE chem_swap_timelevel
	1019	SUBROUTINE chem_define_netcdf_grid
	1053	SUBROUTINE chem_check_data_output
	1103	SUBROUTINE chem_check_data_output_pr
	1157	SUBROUTINE chem_data_output_3d
	1240	SUBROUTINE chem_3d_data_averaging
	1338	SUBROUTINE chem_wrd_local
	1368	SUBROUTINE chem_rrd_local
	1446	SUBROUTINE chem_prognostic_equations_ij
	1548	SUBROUTINE chem_prognostic_equations
chem_modules.f90			Farah → others
	49	MODULE chem_modules
chem_photolysis_mod.f90			Farah → others	Coding standard..?
	47	MODULE chem_photolysis_mod
close_file.f90			Siggi
	86	SUBROUTINE close_file
compute_vpt.f90			Johannes
	65	SUBROUTINE compute_vpt
coriolis.f90			Siggi
	105	SUBROUTINE coriolis
	208	SUBROUTINE coriolis_ij
cpulog_mod.f90			Siggi	check module description → too detailed
	159	MODULE PROCEDURE cpu_statistics
	200	SUBROUTINE cpu_log
	309	SUBROUTINE cpu_statistics
data_log.f90			Siggi
	61	SUBROUTINE data_log
	111	SUBROUTINE data_log_2d
	159	SUBROUTINE data_log_2d_int
data_output_2d.f90			Tobias
	216	SUBROUTINE data_output_2d
data_output_3d.f90			Tobias
	194	SUBROUTINE data_output_3d
data_output_dvrp.f90			Siggi
	105	SUBROUTINE color_dvrp
	125	RECURSIVE SUBROUTINE data_output_dvrp
data_output_profiles.f90			Tobias
	91	SUBROUTINE data_output_profiles
data_output_ptseries.f90			Johannes
	83	SUBROUTINE data_output_ptseries
	240	SUBROUTINE output_spectra_netcdf
data_output_tseries.f90			Sebastian
	76	SUBROUTINE data_output_tseries
diagnostic_quantities_mod.f90			Johannes
	77	SUBROUTINE supersaturation
	127	FUNCTION magnus
disturb_field.f90			Helge
	86	SUBROUTINE disturb_field
disturb_heatflux.f90			Helge
	74	SUBROUTINE disturb_heatflux
eqn_state_seawater.f90			Siggi
	84	MODULE eqn_state_seawater_mod
	130	SUBROUTINE eqn_state_seawater
	244	SUBROUTINE eqn_state_seawater_ij
	350	REAL(wp) FUNCTION eqn_state_seawater_func
exchange_horiz_2d.f90			Simon
	82	SUBROUTINE exchange_horiz_2d
exchange_horiz.f90			Simon
	96	SUBROUTINE exchange_horiz
fft_xy_mod.f90			Siggi (Ketelsen)
	146	MODULE fft_xy
	265	SUBROUTINE fft_init
	397	SUBROUTINE fft_x
	749	SUBROUTINE fft_x_1d
	984	SUBROUTINE fft_y
	1314	SUBROUTINE fft_y_1d
	1539	SUBROUTINE fft_x_m
	1679	SUBROUTINE fft_y_m
flow_statistics.f90			Siggi
	272	SUBROUTINE flow_statistics
global_min_max.f90			Siggi
	68	SUBROUTINE global_min_max
gust_mod.f90			Helge
	219	SUBROUTINE gust_check_data_output_pr
	238	SUBROUTINE gust_check_data_output
	269	SUBROUTINE gust_init
	290	SUBROUTINE gust_define_netcdf_grid
	326	SUBROUTINE gust_actions
	342	SUBROUTINE gust_actions_ij
	361	SUBROUTINE gust_swap_timelevel
	378	SUBROUTINE gust_3d_data_averaging
	395	SUBROUTINE gust_data_output_2d
	425	SUBROUTINE gust_data_output_3d
	451	SUBROUTINE gust_statistics
	471	SUBROUTINE gust_rrd_global
	506	SUBROUTINE gust_rrd_local
header.f90			Tobias
	357	SUBROUTINE header
init_advec.f90			Matthias
	75	SUBROUTINE init_advec
init_cloud_physics.f90			Johannes
	93	SUBROUTINE init_cloud_physics
init_coupling.f90			Siggi	change file name?
	71	SUBROUTINE init_coupling
init_dvrp.f90			Siggi
	77	SUBROUTINE init_dvrp
	777	SUBROUTINE init_dvrp_logging
	840	SUBROUTINE close_dvrp
init_masks.f90			Tobias
	121	SUBROUTINE init_masks
	602	SUBROUTINE set_mask_locations
init_ocean.f90			Siggi
	83	SUBROUTINE init_ocean
init_pegrid.f90			Matthias
	225	SUBROUTINE init_pegrid
init_pt_anomaly.f90			Matthias
	68	SUBROUTINE init_pt_anomaly
init_rankine.f90			Siggi	rename betrag, check necessity
	66	SUBROUTINE init_rankine
init_slope.f90			Siggi
	68	SUBROUTINE init_slope
land_surface_model_mod.f90			Björn
	396	MODULE land_surface_model_mod
	1069	SUBROUTINE lsm_check_data_output
	1185	SUBROUTINE lsm_check_data_output_pr
	1653	SUBROUTINE lsm_energy_balance
	4839	SUBROUTINE lsm_soil_model
	5166	SUBROUTINE lsm_swap_timelevel
	5249	SUBROUTINE lsm_3d_data_averaging
	5590	SUBROUTINE lsm_define_netcdf_grid
	5627	SUBROUTINE lsm_data_output_2d
	5931	SUBROUTINE lsm_data_output_3d
	6199	SUBROUTINE lsm_rrd_local
large_scale_forcing_nudging_mod.f90			Matthias
	62	MODULE lsf_nudging_mod
	165	SUBROUTINE forcing_bc_mass_conservation
	779	SUBROUTINE lsf_nudging_check_data_output_pr
	998	SUBROUTINE lsf_init
	1420	SUBROUTINE ls_forcing_surf
	1507	SUBROUTINE ls_forcing_vert
	1545	SUBROUTINE ls_advec
	1648	SUBROUTINE ls_advec_ij
	1734	SUBROUTINE nudge_init
	1887	SUBROUTINE calc_tnudge
	1921	SUBROUTINE nudge
	2058	SUBROUTINE nudge_ij
	2173	SUBROUTINE nudge_ref
local_system.f90			Siggi	no longer necessary
	56	SUBROUTINE local_system
local_tremain.f90			Sebastian	rename count (is intrinsic function)
	68	SUBROUTINE local_tremain
local_tremain_ini.f90			Sebastian	rename count (is intrinsic function)
	68	SUBROUTINE local_tremain_ini
lpm_advec.f90			Johannes
	156	SUBROUTINE lpm_advec
lpm_boundary_conds.f90			Johannes
	111	SUBROUTINE lpm_boundary_conds
lpm_calc_liquid_water_content.f90			Johannes
	65	SUBROUTINE lpm_calc_liquid_water_content
lpm_collision_kernels.f90			Johannes
	134	MODULE lpm_collision_kernels_mod
	196	SUBROUTINE init_kernels
	317	SUBROUTINE recalculate_kernel
	403	SUBROUTINE turbsd
	574	REAL(wp) FUNCTION phi_w
	591	REAL(wp) FUNCTION zhi
	631	SUBROUTINE fallg
	671	SUBROUTINE effic
	843	SUBROUTINE turb_enhance_eff
lpm_data_output_particles.f90			Johannes
	72	SUBROUTINE lpm_data_output_particles
lpm_droplet_collision.f90			Johannes
	113	SUBROUTINE lpm_droplet_collision
lpm_droplet_condensation.f90			Johannes
	122	SUBROUTINE lpm_droplet_condensation
lpm_exchange_horiz.f90			Johannes
	150	MODULE lpm_exchange_horiz_mod
	886	SUBROUTINE Add_particles_to_gridcell
	1187	SUBROUTINE realloc_particles_array
	1244	SUBROUTINE dealloc_particles_array
lpm.f90			Johannes
	204	SUBROUTINE lpm
lpm_init.f90			Johannes
	206	MODULE lpm_init_mod
	288	SUBROUTINE lpm_init
	1035	SUBROUTINE lpm_init_aerosols
lpm_merging.f90			Johannes
	50	SUBROUTINE lpm_merging
lpm_pack_arrays.f90			Johannes
	123	SUBROUTINE lpm_sort_in_subboxes
	220	SUBROUTINE lpm_pack
lpm_read_restart_file.f90			Johannes
	78	SUBROUTINE lpm_read_restart_file
lpm_set_attributes.f90			Johannes
	78	SUBROUTINE lpm_set_attributes
lpm_write_exchange_statistics.f90			Johannes
	80	SUBROUTINE lpm_write_exchange_statistics
lpm_write_restart_file.f90			Johannes
	67	SUBROUTINE lpm_write_restart_file
message.f90			Sebastian
	89	SUBROUTINE message
	256	SUBROUTINE location_message
microphysics_mod.f90			Johannes
	166	MODULE microphysics_mod
	391	SUBROUTINE microphysics_control
	485	SUBROUTINE adjust_cloud
	555	SUBROUTINE activation
	683	SUBROUTINE condensation
	786	SUBROUTINE autoconversion
	932	SUBROUTINE autoconversion_kessler
	996	SUBROUTINE accretion
	1095	SUBROUTINE selfcollection_breakup
	1172	SUBROUTINE evaporation_rain
	1318	SUBROUTINE sedimentation_cloud
	1433	SUBROUTINE sedimentation_rain
	1758	SUBROUTINE microphysics_control_ij
	1881	SUBROUTINE adjust_cloud_ij
	1944	SUBROUTINE activation_ij
	2084	SUBROUTINE condensation_ij
	2194	SUBROUTINE autoconversion_ij
	2323	SUBROUTINE autoconversion_kessler_ij
	2381	SUBROUTINE accretion_ij
	2470	SUBROUTINE selfcollection_breakup_ij
	2531	SUBROUTINE evaporation_rain_ij
	2677	SUBROUTINE sedimentation_cloud_ij
	2776	SUBROUTINE sedimentation_rain_ij
	3070	FUNCTION gamm
mod_particle_attributes.f90			Johannes
	102	MODULE particle_attributes
modules.f90			Sebastian
	1900	MODULE pegrid
netcdf_data_input_mod.f90			Tobias
	121	MODULE netcdf_data_input_mod
	1991	SUBROUTINE netcdf_data_input_init_3d
	3773	SUBROUTINE open_read_file
	4209	SUBROUTINE get_variable_3d_int8
	4253	SUBROUTINE get_variable_3d_real
	4297	SUBROUTINE get_variable_3d_real_v
	4374	SUBROUTINE get_variable_4d_real
	4511	SUBROUTINE handle_error
netcdf_interface_mod.f90			Tobias
	266	MODULE netcdf_interface
	496	SUBROUTINE netcdf_define_header
	5465	SUBROUTINE netcdf_create_file
	5538	SUBROUTINE netcdf_open_write_file
	5573	SUBROUTINE netcdf_handle_error
	5606	SUBROUTINE netcdf_create_dim
	5637	SUBROUTINE netcdf_create_var
outflow_turbulence.f90			Tobias
	44	SUBROUTINE outflow_turbulence
package_parin.f90			Johannes
	158	SUBROUTINE package_parin
parin.f90			Simon	replace i with ii
	380	SUBROUTINE parin
plant_canopy_model_mod.f90			Farah
	303	SUBROUTINE pcm_check_data_output
	417	SUBROUTINE pcm_data_output_3d
	507	SUBROUTINE pcm_define_netcdf_grid
	543	SUBROUTINE pcm_header
	660	SUBROUTINE pcm_init
	1089	SUBROUTINE pcm_read_plant_canopy_3d
pmc_child_mod.f90			Ketelsen
	1	MODULE pmc_child
	180	SUBROUTINE pmc_childinit
	212	SUBROUTINE pmc_set_dataarray_name
	281	SUBROUTINE pmc_set_dataarray_name_lastentry
	305	SUBROUTINE pmc_c_get_2d_index_list
	420	LOGICAL FUNCTION pmc_c_getnextarray
	457	SUBROUTINE pmc_c_set_dataarray_2d
	490	SUBROUTINE pmc_c_set_dataarray_ip2d
	522	SUBROUTINE pmc_c_set_dataarray_3d
	558	SUBROUTINE pmc_c_setind_and_allocmem
	730	SUBROUTINE pmc_c_getbuffer
	865	SUBROUTINE pmc_c_putbuffer
pmc_general_mod.f90			Ketelsen
	1	MODULE pmc_general
	175	SUBROUTINE pmc_g_setname
	202	SUBROUTINE sort_2d_i
pmc_handle_communicator_mod.f90			Ketelsen
	116	MODULE PMC_handle_communicator
	186	SUBROUTINE pmc_init_model
	398	SUBROUTINE pmc_get_model_info
	474	SUBROUTINE read_coupling_layout
pmc_interface_mod.f90			Ketelsen
	287	MODULE pmc_interface
	674	SUBROUTINE pmci_init
	800	SUBROUTINE pmci_setup_parent
	1055	SUBROUTINE pmci_create_index_list
	1161	SUBROUTINE set_child_edge_coords
	1203	SUBROUTINE pmci_setup_child
	1448	SUBROUTINE pmci_map_fine_to_coarse_grid
	1546	SUBROUTINE pmci_init_interp_tril
	1658	SUBROUTINE pmci_init_loglaw_correction
	2679	SUBROUTINE pmci_define_loglaw_correction_parameters
	2787	SUBROUTINE pmci_find_logc_pivot_k
	2824	SUBROUTINE pmci_find_logc_pivot_j
	2883	SUBROUTINE pmci_find_logc_pivot_i
	2942	FUNCTION pmci_find_nearest_coarse_grid_index_j
	2966	FUNCTION pmci_find_nearest_coarse_grid_index_i
	2990	SUBROUTINE pmci_init_anterp_tophat
	3289	SUBROUTINE pmci_init_tkefactor
	3450	SUBROUTINE pmci_setup_coordinates
	3477	SUBROUTINE pmci_set_array_pointer
	3605	INTEGER FUNCTION get_childid
	3622	SUBROUTINE get_child_edges
	3647	SUBROUTINE get_child_gridspacing
	3662	SUBROUTINE pmci_create_child_arrays
	3768	SUBROUTINE pmci_parent_initialize
	3792	SUBROUTINE pmci_child_initialize
	3918	SUBROUTINE pmci_interp_tril_all
	4077	SUBROUTINE pmci_check_setting_mismatches
	4172	SUBROUTINE pmci_ensure_nest_mass_conservation
	4298	SUBROUTINE pmci_synchronize
	4322	SUBROUTINE pmci_set_swaplevel
	4346	SUBROUTINE pmci_datatrans
	4402	SUBROUTINE pmci_parent_datatrans
	4473	SUBROUTINE pmci_child_datatrans
	5139	SUBROUTINE pmci_interp_tril_lr
	5358	SUBROUTINE pmci_interp_tril_sn
	5574	SUBROUTINE pmci_interp_tril_t
pmc_mpi_wrapper_mod.f90			Ketelsen
	1	MODULE pmc_mpi_wrapper
	156	SUBROUTINE pmc_recv_from_parent_logical
	173	SUBROUTINE pmc_send_to_child_logical
	193	SUBROUTINE pmc_send_to_parent_integer
	211	SUBROUTINE pmc_recv_from_parent_integer
	230	SUBROUTINE pmc_send_to_parent_integer_2
	249	SUBROUTINE pmc_send_to_parent_real_r1
	267	SUBROUTINE pmc_recv_from_parent_real_r1
	286	SUBROUTINE pmc_send_to_parent_real_r2
	303	SUBROUTINE pmc_recv_from_parent_real_r2
	321	SUBROUTINE pmc_send_to_parent_real_r3
	339	SUBROUTINE pmc_recv_from_parent_real_r3
	357	SUBROUTINE pmc_send_to_child_integer
	378	SUBROUTINE pmc_recv_from_child_integer
	399	SUBROUTINE pmc_recv_from_child_integer_2
	420	SUBROUTINE pmc_send_to_child_real_r1
	441	SUBROUTINE pmc_recv_from_child_real_r1
	462	SUBROUTINE pmc_send_to_child_real_r2
	483	SUBROUTINE pmc_recv_from_child_real_r2
	504	SUBROUTINE pmc_send_to_child_real_r3
	525	SUBROUTINE pmc_recv_from_child_real_r3
	546	SUBROUTINE pmc_bcast_integer
	575	SUBROUTINE pmc_bcast_character
	604	SUBROUTINE pmc_inter_bcast_integer_1
	643	SUBROUTINE pmc_alloc_mem_integer_1
	669	SUBROUTINE pmc_alloc_mem_real_1
	698	FUNCTION pmc_time
pmc_parent_mod.f90			Ketelsen
	1	MODULE pmc_parent
	193	SUBROUTINE pmc_parentinit
	243	SUBROUTINE pmc_s_set_2d_index_list
	329	LOGICAL FUNCTION pmc_s_getnextarray
	364	SUBROUTINE pmc_s_set_dataarray_2d
	395	SUBROUTINE pmc_s_set_dataarray_ip2d
	419	SUBROUTINE pmc_s_set_dataarray_3d
	457	SUBROUTINE pmc_s_setind_and_allocmem
	622	SUBROUTINE pmc_s_fillbuffer
	716	SUBROUTINE pmc_s_getdata_from_buffer
	852	SUBROUTINE get_da_names_from_child
	878	SUBROUTINE pmc_s_setarray
	919	SUBROUTINE pmc_s_set_active_data_array
	946	INTEGER FUNCTION pmc_s_get_child_npes
	957	SUBROUTINE set_pe_index_list
pmc_particle_interface.f90			Ketelsen
	1	MODULE pmc_particle_interface
	234	SUBROUTINE pmcp_g_alloc_win
	315	SUBROUTINE pmcp_c_get_particle_from_parent
	389	SUBROUTINE pmcp_c_send_particle_to_parent
	506	SUBROUTINE pmcp_p_fill_particle_win
	649	SUBROUTINE pmcp_p_empty_particle_win
	769	SUBROUTINE pmcp_g_print_number_of_particles
	832	SUBROUTINE check_and_alloc_coarse_particle
	967	SUBROUTINE c_copy_particle_to_coarse_grid
	1082	SUBROUTINE p_copy_particle_to_org_grid
poisfft_mod.f90			Siggi
	153	MODULE poisfft_mod
	193	SUBROUTINE poisfft_init
	220	SUBROUTINE poisfft
	724	SUBROUTINE ffty_tr_yx
	857	SUBROUTINE tr_xy_ffty
	992	SUBROUTINE fftx_tri_fftx
	1136	SUBROUTINE fftx_tr_xy
	1249	SUBROUTINE tr_yx_fftx
	1362	SUBROUTINE ffty_tri_ffty
poismg_mod.f90			Siggi
	148	SUBROUTINE poismg
	428	SUBROUTINE restrict
	566	SUBROUTINE prolong
	733	SUBROUTINE redblack
	1046	SUBROUTINE sort_k_to_even_odd_blocks
	1162	SUBROUTINE sort_k_to_even_odd_blocks_int
	1235	SUBROUTINE sort_k_to_sequential
	1291	SUBROUTINE mg_gather
	1372	SUBROUTINE mg_scatter
	1421	RECURSIVE SUBROUTINE next_mg_level
	1806	SUBROUTINE init_even_odd_blocks
	1870	SUBROUTINE special_exchange_horiz
poismg_noopt_mod.f90			Siggi
	193	SUBROUTINE poismg_noopt
	342	SUBROUTINE resid_noopt
	487	SUBROUTINE restrict_noopt
	702	SUBROUTINE prolong_noopt
	813	SUBROUTINE redblack_noopt
	1286	SUBROUTINE mg_gather_noopt
	1368	SUBROUTINE mg_scatter_noopt
	1418	RECURSIVE SUBROUTINE next_mg_level_noopt
	1795	SUBROUTINE poismg_noopt_init
posix_calls_from_fortran.f90			Tobias	edit module description, check coding standard
	42	MODULE posix_calls_from_fortran
	53	FUNCTION fsleep( seconds ) BIND
	75	SUBROUTINE fortran_sleep
pres.f90			Siggi
	155	SUBROUTINE pres
print_1d.f90			Sebastian
	70	SUBROUTINE print_1d
prognostic_equations.f90			Sebastian
	437	SUBROUTINE prognostic_equations_cache
	1353	SUBROUTINE prognostic_equations_vector
progress_bar_mod.f90			Helge
	59	MODULE progress_bar
radiation_model_mod.f90			Björn
	336	MODULE radiation_model_mod
	1047	SUBROUTINE radiation_check_data_output
	1113	SUBROUTINE radiation_check_data_output_pr
	2745	SUBROUTINE radiation_rrtmg
	3961	SUBROUTINE read_trace_gas_data
	4215	SUBROUTINE netcdf_handle_error_rad
	4328	SUBROUTINE radiation_interaction
	4870	PURE SUBROUTINE box_absorb
	4942	SUBROUTINE calc_diffusion_radiation
	5008	SUBROUTINE radiation_interaction_init
	5334	SUBROUTINE radiation_calc_svf
	6062	SUBROUTINE raytrace
	6253	SUBROUTINE raytrace_2d
	6606	SUBROUTINE radiation_presimulate_solar_pos
	6700	PURE LOGICAL FUNCTION surface_facing
	6760	SUBROUTINE radiation_read_svf
	6893	SUBROUTINE radiation_write_svf
	6944	PURE FUNCTION svf_lt
	6960	RECURSIVE SUBROUTINE quicksort_svf
	6988	PURE FUNCTION csf_lt
	7009	RECURSIVE SUBROUTINE quicksort_csf
	7037	SUBROUTINE merge_and_grow_csf
	7121	RECURSIVE SUBROUTINE quicksort_csf2
	7152	PURE FUNCTION csf_lt2
	7162	PURE FUNCTION searchsorted
	7301	SUBROUTINE radiation_3d_data_averaging
	7626	SUBROUTINE radiation_define_netcdf_grid
	7677	SUBROUTINE radiation_data_output_2d
	7951	SUBROUTINE radiation_data_output_3d
	8180	SUBROUTINE radiation_data_output_mask
	8491	SUBROUTINE radiation_rrd_local
	8796	SUBROUTINE radiation_write_debug_log
random_function_mod.f90			Helge	merge into random_generator_parallel_mod.f90?
	73	MODULE random_function_mod
	111	FUNCTION random_function
random_gauss.f90			Siggi	merge into random_generator_parallel_mod.f90?
	66	FUNCTION random_gauss
random_generator_parallel_mod.f90			Helge
	73	MODULE random_generator_parallel
	142	SUBROUTINE init_parallel_random_generator
	198	SUBROUTINE ran0_s
	234	SUBROUTINE ran_init
	354	SUBROUTINE random_seed_parallel
	407	SUBROUTINE ran_hash_v
	453	FUNCTION reallocate_iv
	483	FUNCTION reallocate_im
	522	FUNCTION arth_i
read_restart_data_mod.f90			Sebastian
	88	SUBROUTINE rrd_global
	808	SUBROUTINE rrd_read_parts_of_global
	1036	SUBROUTINE rrd_local
	2065	SUBROUTINE rrd_skip_global
run_control.f90			Sebastian
	79	SUBROUTINE run_control
set_slicer_attributes_dvrp.f90			Siggi
	62	SUBROUTINE set_slicer_attributes_dvrp
singleton_mod.f90			Siggi	edit description
	167	MODULE singleton
	201	FUNCTION fft1d
	230	FUNCTION fft2d
	258	FUNCTION fft3d
	288	FUNCTION fft4d
	317	FUNCTION fft5d
	348	FUNCTION fft6d
	379	FUNCTION fft7d
	410	SUBROUTINE fftn
	468	SUBROUTINE fftradix
	535	SUBROUTINE factorize
	604	SUBROUTINE transform
	959	SUBROUTINE permute
sor.f90			Siggi
	70	SUBROUTINE sor
spectra_mod.f90			Siggi	coding standard
	126	MODULE spectra_mod
	413	SUBROUTINE calc_spectra
	546	SUBROUTINE preprocess_spectra
	654	SUBROUTINE calc_spectra_x
	801	SUBROUTINE calc_spectra_y
subsidence_mod.f90			Tobias
	119	SUBROUTINE init_w_subsidence
	196	SUBROUTINE subsidence
	311	SUBROUTINE subsidence_ij
sum_up_3d_data.f90			Matthias
	184	SUBROUTINE sum_up_3d_data
surface_coupler.f90			Siggi	coding standard
	91	SUBROUTINE surface_coupler
	676	SUBROUTINE interpolate_to_atmos
	765	SUBROUTINE interpolate_to_ocean
swap_timelevel.f90			Sebastian	!> instead of !<
	122	SUBROUTINE swap_timelevel
temperton_fft_mod.f90			Siggi	coding standard, descriptions
	112	SUBROUTINE fft991cy
	354	SUBROUTINE qpassm
	1231	SUBROUTINE rpassm
	2085	SUBROUTINE set99
time_integration.f90			Sebastian
	340	SUBROUTINE time_integration
time_integration_spinup.f90			Sebastian
	88	SUBROUTINE time_integration_spinup
	581	FUNCTION solar_angle
timestep.f90			Siggi
	112	SUBROUTINE timestep
time_to_string.f90			Simon	move function to module, USE, coding standard
	62	FUNCTION time_to_string
transpose.f90			Siggi	coding standard
	93	SUBROUTINE resort_for_xy
	137	SUBROUTINE transpose_xy
	222	SUBROUTINE resort_for_xz
	264	SUBROUTINE transpose_xz
	352	SUBROUTINE resort_for_yx
	396	SUBROUTINE transpose_yx
	484	SUBROUTINE transpose_yxd
	561	SUBROUTINE resort_for_yz
	605	SUBROUTINE transpose_yz
	691	SUBROUTINE resort_for_zx
	732	SUBROUTINE transpose_zx
	818	SUBROUTINE resort_for_zy
	863	SUBROUTINE transpose_zy
	952	SUBROUTINE transpose_zyd
tridia_solver_mod.f90			Siggi
	105	MODULE tridia_solver
	140	SUBROUTINE tridia_init
	179	SUBROUTINE maketri
	272	SUBROUTINE tridia_substi
	348	SUBROUTINE tridia_substi_overlap
	425	SUBROUTINE split
	472	SUBROUTINE tridia_1dd
	533	SUBROUTINE maketri_1dd
	600	SUBROUTINE split_1dd
	628	SUBROUTINE substi_1dd
turbulence_closure_mod.f90			Tobias
	371	SUBROUTINE tcm_check_data_output
	415	SUBROUTINE tcm_define_netcdf_grid
	468	SUBROUTINE tcm_3d_data_averaging
	607	SUBROUTINE tcm_data_output_2d
	728	SUBROUTINE tcm_data_output_3d
	950	SUBROUTINE tcm_init
	2175	SUBROUTINE tcm_prognostic_ij
	2381	SUBROUTINE production_e
	3098	SUBROUTINE production_e_ij
	3793	SUBROUTINE diffusion_e
	3928	SUBROUTINE diffusion_e_ij
	4111	SUBROUTINE diffusion_diss_ij
	4289	SUBROUTINE tcm_diffusivities
	4509	SUBROUTINE tcm_swap_timelevel
urban_surface_mod.f90			Farah → others
	274	MODULE urban_surface_mod
	814	SUBROUTINE usm_allocate_surface
	1202	SUBROUTINE usm_average_3d_data
	2247	SUBROUTINE usm_check_data_output
	2348	SUBROUTINE usm_data_output_3d
	3332	SUBROUTINE usm_define_netcdf_grid
	3516	SUBROUTINE usm_init_urban_surface
	5324	SUBROUTINE usm_read_anthropogenic_heat
	5410	SUBROUTINE usm_rrd_local
	6590	SUBROUTINE usm_read_urban_surface_types
	7068	PURE FUNCTION advance_surface
	7099	SUBROUTINE usm_read_wall_temperature
	7661	SUBROUTINE usm_swap_timelevel
user_3d_data_averaging.f90			Simon
	67	SUBROUTINE user_3d_data_averaging
user_actions.f90			Simon
	99	SUBROUTINE user_actions
	206	SUBROUTINE user_actions_ij
user_check_data_output.f90			Simon
	60	SUBROUTINE user_check_data_output
user_check_data_output_pr.f90			Simon
	63	SUBROUTINE user_check_data_output_pr
user_data_output_2d.f90			Simon
	76	SUBROUTINE user_data_output_2d
user_data_output_3d.f90			Simon
	71	SUBROUTINE user_data_output_3d
user_data_output_dvrp.f90			Simon
	57	SUBROUTINE user_data_output_dvrp
user_data_output_mask.f90			Simon
	55	SUBROUTINE user_data_output_mask
user_define_netcdf_grid.f90			Simon
	59	SUBROUTINE user_define_netcdf_grid
user_dvrp_coltab.f90			Simon
	55	SUBROUTINE user_dvrp_coltab
user_header.f90			Simon
	63	SUBROUTINE user_header
user_init.f90			Simon
	64	SUBROUTINE user_init
user_lpm_init.f90			Simon
	66	SUBROUTINE user_lpm_init
user_lpm_set_attributes.f90			Simon
	63	SUBROUTINE user_lpm_set_attributes
user_module.f90			Simon
	71	MODULE user
user_parin.f90			Simon
	86	SUBROUTINE user_parin
user_read_restart_data_mod.f90			Simon
	63	SUBROUTINE user_rrd_global
	102	SUBROUTINE user_rrd_local
user_spectra.f90			Simon
	66	SUBROUTINE user_spectra
user_statistics.f90			Simon
	78	SUBROUTINE user_statistics
uv_exposure_model_mod.f90			Michael	hard coding necessary?
	68	MODULE uv_exposure_model_mod
	256	SUBROUTINE uvem_check_data_output
	315	SUBROUTINE uvem_data_output_2d
	395	SUBROUTINE uvem_define_netcdf_grid
	477	SUBROUTINE uvem_3d_data_averaging
vertical_nesting_mod.f90			Farah → SadiqHuq?
	78	MODULE vertical_nesting_mod
	221	SUBROUTINE vnest_init_fine
	629	SUBROUTINE interpolate_to_fine_w
	761	SUBROUTINE interpolate_to_fine_u
	907	SUBROUTINE interpolate_to_fine_v
	1051	SUBROUTINE interpolate_to_fine_s
	1201	SUBROUTINE interpolate_to_fine_kh
	1369	SUBROUTINE interpolate_to_fine_km
	1539	SUBROUTINE interpolate_to_fine_flux
	1675	SUBROUTINE vnest_boundary_conds
	1839	SUBROUTINE vnest_set_topbc_w
	1941	SUBROUTINE vnest_set_topbc_u
	2041	SUBROUTINE vnest_set_topbc_v
	2150	SUBROUTINE vnest_set_topbc_s
	2291	SUBROUTINE vnest_boundary_conds_khkm
	2442	SUBROUTINE vnest_set_topbc_kh
	2580	SUBROUTINE vnest_set_topbc_km
	2725	SUBROUTINE vnest_anterpolate
	2998	SUBROUTINE anterpolate_to_crse_u
	3068	SUBROUTINE anterpolate_to_crse_v
	3137	SUBROUTINE anterpolate_to_crse_w
	3206	SUBROUTINE anterpolate_to_crse_s
	3280	SUBROUTINE vnest_anterpolate_e
	3438	SUBROUTINE anterpolate_to_crse_e
	3537	SUBROUTINE vnest_init_pegrid_rank
	3631	SUBROUTINE vnest_init_pegrid_domain
wind_turbine_model_mod.f90			Sebastian
	143	MODULE wind_turbine_model_mod
	479	SUBROUTINE wtm_parin
	627	SUBROUTINE wtm_rrd_global
	717	SUBROUTINE wtm_init_arrays
	933	SUBROUTINE wtm_init
	1316	SUBROUTINE wtm_read_blade_tables
	1565	SUBROUTINE wtm_rotate_rotor
	1630	SUBROUTINE wtm_forces
	2490	SUBROUTINE wtm_yawcontrol
	2633	SUBROUTINE wtm_speed_control
write_restart_data_mod.f90			Sebastian
	86	SUBROUTINE wrd_global
	948	SUBROUTINE wrd_local