Changes between Version 2 and Version 3 of doc/tec/changelog_2009-2012

Timestamp:

Feb 23, 2021 3:47:07 PM (4 years ago)

Author:

wagner

Comment:

--

doc/tec/changelog_2009-2012

@@ -142 +142 @@
 {{{#!td style="vertical-align:top"
 '''Bugfixes:'''\\
-It is not allowed to use [wiki:doc/app/inipar#cloud_scheme cloud_scheme] = 'seifert_beheng' without [wiki:doc/app/inipar#precipitation precipitation] = .TRUE. (check_parameters).
-
-Boundaries of ql-cross-sections in case of [wiki:doc/app/inipar#cloud_scheme cloud_scheme] = 'seifert_beheng'] adjusted (data_output_2d).
-
-'''Changes in the two-moments cloud physics scheme ([wiki:doc/app/inipar#cloud_scheme cloud_scheme] = 'seifert_beheng':'''\\
-Sedimentation of rain according to Stevens and Seifert (2008) has been implemented. Monotonicity of the sedimentation process is insured by limiting the slopes of qr and nr. The limiter can be steered with the parameter [wiki:doc/app/inipar#limiter_sedimentation limiter_sedimentation]. The default is [wiki:doc/app/inipar#limiter_sedimentation limiter_sedimentation] = .TRUE.. Therefore, the Courant number of the sedimentation process can be greater than one. The Courant number can be controlled by [wiki:doc/app/inipar#c_sedimentation c_sedimentation] (default: [wiki:doc/app/inipar#c_sedimentation c_sedimentation] = 2.0) (microphysics, init_cloud_physics, modules, parin, read_var_list, write_var_list).
+It is not allowed to use [wiki:doc/app/initialization_parameters#cloud_scheme cloud_scheme] = 'seifert_beheng' without [wiki:doc/app/initialization_parameters#precipitation precipitation] = .TRUE. (check_parameters).
+
+Boundaries of ql-cross-sections in case of [wiki:doc/app/initialization_parameters#cloud_scheme cloud_scheme] = 'seifert_beheng'] adjusted (data_output_2d).
+
+'''Changes in the two-moments cloud physics scheme ([wiki:doc/app/initialization_parameters#cloud_scheme cloud_scheme] = 'seifert_beheng':'''\\
+Sedimentation of rain according to Stevens and Seifert (2008) has been implemented. Monotonicity of the sedimentation process is insured by limiting the slopes of qr and nr. The limiter can be steered with the parameter [wiki:doc/app/initialization_parameters#limiter_sedimentation limiter_sedimentation]. The default is [wiki:doc/app/initialization_parameters#limiter_sedimentation limiter_sedimentation] = .TRUE.. Therefore, the Courant number of the sedimentation process can be greater than one. The Courant number can be controlled by [wiki:doc/app/initialization_parameters#c_sedimentation c_sedimentation] (default: [wiki:doc/app/initialization_parameters#c_sedimentation c_sedimentation] = 2.0) (microphysics, init_cloud_physics, modules, parin, read_var_list, write_var_list).
 
 Turbulence effects on autoconversion and accretion according to Seifert, Nuijens and Stevens (2010) have been implemented and can be activated with [wiki:doc/app/d3par#turbulence turbulence] = .TRUE. (microphysics, diffusion_e, init_3d_model, modules, parin, read_var_list, time_integration, write_var_list).
 
-The number density of cloud droplets can be adjusted with [wiki:doc/app/inipar#nc nc]. The default ([wiki:doc/app/inipar#nc nc] = 70.0E6 ) is applicable for marine conditions (parin, read_var_list, write_var_list).
+The number density of cloud droplets can be adjusted with [wiki:doc/app/initialization_parameters#nc nc]. The default ([wiki:doc/app/initialization_parameters#nc nc] = 70.0E6 ) is applicable for marine conditions (parin, read_var_list, write_var_list).
 
 '''Attention:'''\\
@@ -196 +196 @@
 Two-moment cloud physics (Seifert and Beheng, 2006) have been implemented. Therefore, two new prognostic equations (nr: rain drop number density; qr: rain water content) and associated basic output quantities are introduced (advec_ws, average_3d_data, boundary_conds, check_parameter, data_output_2d, data_output_3d, flow_statistics, init_3d_model, init_cloud_physics, modules, netcdf, parin, prognostic_equations, read_3d_binary, read_var_list, sum_up_3d_data, swap_timelevel, time_integration, user_actions, write_3d_binary, write_var_list). Microphysical tendencies affecting the prognostic equations of liquid water potential temperature, specific humidity, rain drop number density and rain water content are computed in the new module microphysics (additional changes: calc_liquid_water_content, Makefile). According to the CFL criterion, the timestep has to be reduced in case of precipitation (timestep).
 
-The new cloud physics scheme can be used with [wiki:doc/app/inipar#humidty humidity] = .TRUE. and [wiki:doc/app/inipar#cloud_physics cloud_physics] = .TRUE.. It is the the default value of the new steering parameter [wiki:doc/app/inipar#cloud_scheme cloud_scheme] = 'seifert_beheng' ([wiki:doc/app/inipar#cloud_scheme cloud_scheme] = 'kessler' allows the use of the former cloud physics scheme). It is not allowed to use the new cloud physics without [wiki:doc/app/inipar#precipitation precipitation] = .TRUE. ([wiki:doc/app/errmsg#PA0363 PA0363]). 
-
-The ventilation effect on evaporation of rain drops according to Seifert (2008) has been implemented and can be activated with [wiki:doc/app/inipar#ventilation_effect ventilation_effect]. 
-
-Drizzle of raindrops according to Heus et al. (2010) has been implemented and can be activated with [wiki:doc/app/inipar#drizzle drizzle]. 
+The new cloud physics scheme can be used with [wiki:doc/app/initialization_parameters#humidty humidity] = .TRUE. and [wiki:doc/app/initialization_parameters#cloud_physics cloud_physics] = .TRUE.. It is the the default value of the new steering parameter [wiki:doc/app/initialization_parameters#cloud_scheme cloud_scheme] = 'seifert_beheng' ([wiki:doc/app/initialization_parameters#cloud_scheme cloud_scheme] = 'kessler' allows the use of the former cloud physics scheme). It is not allowed to use the new cloud physics without [wiki:doc/app/initialization_parameters#precipitation precipitation] = .TRUE. ([wiki:doc/app/errmsg#PA0363 PA0363]). 
+
+The ventilation effect on evaporation of rain drops according to Seifert (2008) has been implemented and can be activated with [wiki:doc/app/initialization_parameters#ventilation_effect ventilation_effect]. 
+
+Drizzle of raindrops according to Heus et al. (2010) has been implemented and can be activated with [wiki:doc/app/initialization_parameters#drizzle drizzle]. 
 
 '''Attention:'''\\
@@ -283 +283 @@
 mask locations determined based on scalar positions (init_masks)
 
-save memory by not allocating pt_2 in case of [wiki:doc/app/inipar#neutral neutral] = .T. (init_3d_model, swap_timelevel; see also r940)
+save memory by not allocating pt_2 in case of [wiki:doc/app/initialization_parameters#neutral neutral] = .T. (init_3d_model, swap_timelevel; see also r940)
 
 minor reformatting (check_for_restart)
@@ -652 +652 @@
 {{{#!td style="vertical-align:top"
 '''New:''' \\
-Roughness length for scalar quantities z0h can be set by the new inipar-parameter [wiki:doc/app/inipar#z0h_factor z0h_factor].
+Roughness length for scalar quantities z0h can be set by the new inipar-parameter [wiki:doc/app/initialization_parameters#z0h_factor z0h_factor].
 (average_3d_data, check_parameters, data_output_2d, header, init_1d_model, init_3d_model, init_masks, modules, parin, prandtl_fluxes, read_3d_binary, read_var_list, sum_up_3d_data, write_3d_binary, write_var_list)
 
 An inflow damping zone for the potential temperature has been implemented for the case of non-cyclic lateral boundaries.
-It is steered by new inipar-parameter [wiki:doc/app/inipar#pt_damping_width pt_damping_width] and [wiki:doc/app/inipar#pt_damping_factor pt_damping_factor].
+It is steered by new inipar-parameter [wiki:doc/app/initialization_parameters#pt_damping_width pt_damping_width] and [wiki:doc/app/initialization_parameters#pt_damping_factor pt_damping_factor].
 (check_parameters, header, init_3d_model, modules, parin, prognostic_equations, read_var_list, write_var_list)
 
@@ -813 +813 @@
 }}}
 {{{#!td style="vertical-align:top"
-Prognostic equation for temperature can be switched off with new inipar parameter [wiki:doc/app/inipar#neutral neutral] in order to spare cpu time in case of simulating pure neutrally stratified flows. This will also switch off calculation of all buoyancy related terms.
+Prognostic equation for temperature can be switched off with new inipar parameter [wiki:doc/app/initialization_parameters#neutral neutral] in order to spare cpu time in case of simulating pure neutrally stratified flows. This will also switch off calculation of all buoyancy related terms.
 (check_parameters, modules, header, parin, production_e, prognostic_equations, read_var_list, write_var_list)
 }}}
@@ -873 +873 @@
 }}}
 {{{#!td style="vertical-align:top"
-Masking method can be switched on for multigrid-solver using inipar parameter [../../app/inipar/#masking_method masking_method]. This feature has been implemented because some topography data have caused job aborts which are probably due to wrong boundary condition settings in the multigrid-solver. This problem will be adressed in a future revision. (header.f90, init_grid.f90, modules.f90, read_var_list.f90, write_var_list.f90).
+Masking method can be switched on for multigrid-solver using inipar parameter [../../app/initialization_parameters#masking_method masking_method]. This feature has been implemented because some topography data have caused job aborts which are probably due to wrong boundary condition settings in the multigrid-solver. This problem will be adressed in a future revision. (header.f90, init_grid.f90, modules.f90, read_var_list.f90, write_var_list.f90).
 }}}
 |----------------
@@ -1430 +1430 @@
 }}}
 {{{#!td style="vertical-align:top"
-Droplet growth by condensation may include curvature and solution effects. These are steered by the new inipar-parameter [../../app/inipar/#curvature_solution_effects curvature_solution_effects]. The droplet growth equation by condensation is solved with the Rosenbrock method for stiff o.d.e's with monitoring local truncation error to adjust stepsize (see Numerical recipes in FORTRAN, 2nd edition, p. 731). (advec_particles, check_parameters, header, init_cloud_physics, init_particles, modules, parin, read_var_list, write_var_list)
+Droplet growth by condensation may include curvature and solution effects. These are steered by the new inipar-parameter [../../app/initialization_parameters#curvature_solution_effects curvature_solution_effects]. The droplet growth equation by condensation is solved with the Rosenbrock method for stiff o.d.e's with monitoring local truncation error to adjust stepsize (see Numerical recipes in FORTRAN, 2nd edition, p. 731). (advec_particles, check_parameters, header, init_cloud_physics, init_particles, modules, parin, read_var_list, write_var_list)
 
 Mean, minimum, and maximum particle radius added as output quantity to the particle time series. (data_output_ptseries, modules)
@@ -1591 +1591 @@
 }}}
 {{{#!td style="vertical-align:top"
-New: the utility program '''check_namelist_files''' has been implemented. It is used by mrun to check the parameter files (e.g. *_p3d, *_p3df) before the batch job is submitted/the interactive job is started. The source code of palm has thus been modified by means of the '''pre-processor directive !__check''', which is only used for the compilation of the check_namelist_files program. Basically the directive is used to exclude the MPI-functions for compilation with a serial compiler (on the local host). Note: the namelist file check is currently not possible for coupled runs and for [../../app/inipar/#initializing_actions initializing_actions='cyclic_fill']! A new mrun option '-z' has been implemented to switch off check_namelist_files program (PALM will of course still check the namelist files when the simulation starts) (Makefile_check, mbuild, mrun, check_namelist_files, init_pegrid, check_parameters, init_masks, poisfft, poisfft_hybrid, local_stop, init_grid, check_open, modules).
+New: the utility program '''check_namelist_files''' has been implemented. It is used by mrun to check the parameter files (e.g. *_p3d, *_p3df) before the batch job is submitted/the interactive job is started. The source code of palm has thus been modified by means of the '''pre-processor directive !__check''', which is only used for the compilation of the check_namelist_files program. Basically the directive is used to exclude the MPI-functions for compilation with a serial compiler (on the local host). Note: the namelist file check is currently not possible for coupled runs and for [../../app/initialization_parameters#initializing_actions initializing_actions='cyclic_fill']! A new mrun option '-z' has been implemented to switch off check_namelist_files program (PALM will of course still check the namelist files when the simulation starts) (Makefile_check, mbuild, mrun, check_namelist_files, init_pegrid, check_parameters, init_masks, poisfft, poisfft_hybrid, local_stop, init_grid, check_open, modules).
 }}}
 |----------------
@@ -1774 +1774 @@
 }}}
 {{{#!td style="vertical-align:top"
-Scalar quantities ({{{pt}}}, {{{q}}}, {{{sa}}}) can be excluded from Rayleigh damping by setting new parameter [../../app/inipar/#scalar_rayleigh_damping scalar_rayleigh_damping] = .FALSE.
+Scalar quantities ({{{pt}}}, {{{q}}}, {{{sa}}}) can be excluded from Rayleigh damping by setting new parameter [../../app/initialization_parameters#scalar_rayleigh_damping scalar_rayleigh_damping] = .FALSE.
 (init_3d_model, modules, parin, prognostic_equations)
 }}}
@@ -1947 +1947 @@
 }}}
 {{{#!td style="vertical-align:top"
-Output of liquid water potential temperature lpt as cross section, volume and masked data in case of [../../app/inipar/#cloud_physics cloud_physics]=.T. enabled. See also [../../app/d3par/#data_output data_output] and [../../app/d3par/#data_output_masks data_output_masks]. (average_3d_data, check_parameters, data_output_2d, data_output_3d, data_output_mask, init_masks, modules, netcdf, read_3d_binary, sum_up_3d_data, write_3d_binary)
+Output of liquid water potential temperature lpt as cross section, volume and masked data in case of [../../app/initialization_parameters#cloud_physics cloud_physics]=.T. enabled. See also [../../app/d3par/#data_output data_output] and [../../app/d3par/#data_output_masks data_output_masks]. (average_3d_data, check_parameters, data_output_2d, data_output_3d, data_output_mask, init_masks, modules, netcdf, read_3d_binary, sum_up_3d_data, write_3d_binary)
 }}}
 |----------------
@@ -1987 +1987 @@
 }}}
 {{{#!td style="vertical-align:top"
-Flow field initialization with given (e.g. measured) profiles implemented. Profile data for u-,v-velocity components + respective heights are given with new inipar-parameters [../../app/inipar/#u_profile u_profile], [../../app/inipar/#v_profile v_profile], and [../../app/inipar/#uv_heights uv_heights]. Final profiles are calculated from these given profiles by linear interpolation. (check_parameters, header, init_3d_model, modules, parin)
+Flow field initialization with given (e.g. measured) profiles implemented. Profile data for u-,v-velocity components + respective heights are given with new inipar-parameters [../../app/initialization_parameters#u_profile u_profile], [../../app/initialization_parameters#v_profile v_profile], and [../../app/initialization_parameters#uv_heights uv_heights]. Final profiles are calculated from these given profiles by linear interpolation. (check_parameters, header, init_3d_model, modules, parin)
 }}}
 |----------------
@@ -2944 +2944 @@
 '''Most important changes:''' New advection scheme added. Different number of processors and different horizontal resolution in ocean and atmosphere is now allowed. Bottom boundary conditions for u and v  changed from mirror to dirichlet boundary conditions. Inflow turbulence is now defined by fluctuations around spanwise mean. 
 
-Advection scheme ( see [../../app/inipar/#momentum_advec momentum_advec] and [../../app/inipar/#scalar_advec scalar_advec] ) :
+Advection scheme ( see [../../app/initialization_parameters#momentum_advec momentum_advec] and [../../app/initialization_parameters#scalar_advec scalar_advec] ) :
 
 New advection scheme added ( Wicker and Skamarock 5th order ). Turbulent fluxes are computed directly inside advection routines, removed from flow_statistics. (advec_ws)
 
-Check for illegal combination of ws-scheme and [../../app/inipar/#timestep_scheme timestep_scheme].
-Check for [../../app/inipar/#topography topography] and ws-scheme.
-Check for not cyclic boundary conditions in combination with ws-scheme and [../../app/inipar/#loop_optimization loop_optimization] = 'vector'.
-Check for [../../app/inipar#call_psolver_at_all_substeps call_psolver_at_all_substeps] and [../../app/inipar#momentum_advec momentum_advec] = 'ws-scheme'. (check_parameters)
+Check for illegal combination of ws-scheme and [../../app/initialization_parameters#timestep_scheme timestep_scheme].
+Check for [../../app/initialization_parameters#topography topography] and ws-scheme.
+Check for not cyclic boundary conditions in combination with ws-scheme and [../../app/initialization_parameters#loop_optimization loop_optimization] = 'vector'.
+Check for [../../app/initialization_parameters#call_psolver_at_all_substeps call_psolver_at_all_substeps] and [../../app/initialization_parameters#momentum_advec momentum_advec] = 'ws-scheme'. (check_parameters)
 
 When advection is computed with ws-scheme, turbulent fluxes are already 
@@ -3075 +3075 @@
 init_pt_anomaly, init_rankine, poismg, sor, time_integration)
 
-Default of [../../app/inipar/#momentum_advec momentum_advec] and [../../app/inipar/#scalar_advec scalar_advec] changed to 'ws-scheme'. (modules)
+Default of [../../app/initialization_parameters#momentum_advec momentum_advec] and [../../app/initialization_parameters#scalar_advec scalar_advec] changed to 'ws-scheme'. (modules)
 
 nxl-1, nxr+1, nys-1, nyn+1 replaced by nxlg, nxrg, nysg, nyng 
@@ -3131 +3131 @@
 }}}
 {{{#!td style="vertical-align:top"
-Bugfix in checking for [../../app/inipar#conserve_volume_flow_mode conserve_volume_flow_mode]. (check_parameters)
+Bugfix in checking for [../../app/initialization_parameters#conserve_volume_flow_mode conserve_volume_flow_mode]. (check_parameters)
 
 Changed length of string run_description_header. (modules)
@@ -3275 +3275 @@
 }}}
 {{{#!td style="vertical-align:top"
-Optional barriers included in order to speed up collective operations {{{MPI_ALLTOALL}}} and {{{MPI_ALLREDUCE}}}. This feature is controlled with new initial parameter [[../../app/inipar#collective_wait|collective_wait]]. Default is .FALSE, but .TRUE. on SGI-type systems. (advec_particles, advec_s_bc, buoyancy, check_for_restart, cpu_statistics, data_output_2d, data_output_ptseries, flow_statistics,
+Optional barriers included in order to speed up collective operations {{{MPI_ALLTOALL}}} and {{{MPI_ALLREDUCE}}}. This feature is controlled with new initial parameter [[../../app/initialization_parameters#collective_wait|collective_wait]]. Default is .FALSE, but .TRUE. on SGI-type systems. (advec_particles, advec_s_bc, buoyancy, check_for_restart, cpu_statistics, data_output_2d, data_output_ptseries, flow_statistics,
 global_min_max, inflow_turbulence, init_3d_model, init_particles, init_pegrid, init_slope, parin, pres, poismg, set_particle_attributes, timestep, read_var_list, user_statistics, write_compressed, write_var_list)