Changes between Version 89 and Version 90 of doc/app/chemistry_parameters

Timestamp:

Jan 7, 2019 1:27:16 PM (5 years ago)

Author:

weniger

Comment:

--

doc/app/chemistry_parameters

@@ -16 +16 @@
 
 Currently PALM-4U includes the following sample of chemistry mechanisms:\\
-  * cbm4: Carbon Bond Mechanism (Gery et al. 1989, 32 compounds, 81 reactions)\\
+  * cbm4: Carbon Bond Mechanism (Gery et al. (1989), 32 compounds, 81 reactions)\\
   * smog: Photochemical smog mechanism (13 compounds, 12 reactions)\\
   * simple: Simplified version of SMOG (9 compounds, 7 reactions)\\
@@ -32 +32 @@
 In order to select and apply a certain mechanism from this sample, please copy the respective ready-to-use `chem_gasephase_mod.f90` from `UTIL/chemistry/gasphase_preproc/mechanisms/def_MECH` (where `MECH` stands for any of the available mechanisms) into the USER_CODE directory of the respective simulation Setup, i.e. .../JOBS/<run_identifier>/USER_CODE/chem_gasphase_mod.f90.
 
-Alternatively, the chemistry preprocessor can be executed also for the available machanism in order to create chem_gasphase_mod.f90 (although for the available mechanisms this is not necessary because the chem_gasphase_mod.f90 files are already existing) instead of copying chem_gasphase_mod.f90: Enter the directory UTIL/chemistry/gasphase_preproc and apply the run script, i.e. {{{run_kpp4palm.ksh -m MECH}}}, where MECH stands for any of the mechanisms listed above. The resulting chem_gasphase_mod.f90 will be copied by the script directly into the SOURCE directory. 
+Alternatively, the chemistry preprocessor can be executed also for the available machanism in order to create `chem_gasphase_mod.f90` (although for the available mechanisms this is not necessary because the `chem_gasphase_mod.f90` files are already existing) instead of copying `chem_gasphase_mod.f90`: Enter the directory `UTIL/chemistry/gasphase_preproc` and apply the run script, i.e. {{{run_kpp4palm.ksh -m MECH}}}, where `MECH` stands for any of the mechanisms listed above. The resulting `chem_gasphase_mod.f90` will be copied by the script directly into the SOURCE directory. 
 
 In order to find out which reactions and compounds are included in the different mechanisms, please have a look into the files MECH.eqn and MECH.spc in `UTIL/chemistry/gasphase_preproc/mechanisms/def_MECH`.
 
-How to implement a new chemical mechanism or add further passive tracers see the [wiki:chempar#no1 Readme-File]. If more than two passive tracers or different names of the passive tracers are desired, a new 'mechanism' must be created as described in the Readme file. The Readme file is also available in the PALM-4U subdirectory UTIL/chemistry/gasphase_preproc. 
-
-Currently, areosol compounds can be considered either as passive compounds or the sectional aerosol module SALSA [wiki:wiki/doc/app/salsa] (Kokkola et al., 2008 Atmos. Chem. Phys., 8, 2469–2483, 2008) can be used to simulate the aerosol particle concentrations, and size distributions. 
+How to implement a new chemical mechanism or add further passive tracers see the [wiki:chempar#no1 Readme-File]. If more than two passive tracers or different names of the passive tracers are desired, a new 'mechanism' must be created as described in the Readme file. The Readme file is also available in the PALM-4U subdirectory `UTIL/chemistry/gasphase_preproc`. 
+
+Currently, areosol compounds can be considered either as passive compounds or the sectional aerosol module [wiki:salsa SALSA]   (Kokkola et al., 2008 Atmos. Chem. Phys., 8, 2469–2483, 2008) can be used to simulate the aerosol particle concentrations, and size distributions.