Changes between Version 12 and Version 13 of doc/app/chemistry_parameters

Timestamp:

Oct 10, 2018 1:18:30 PM (6 years ago)

Author:

forkel

Comment:

--

doc/app/chemistry_parameters

@@ -9 +9 @@
 The module chem_gasphase_mod.f90, where the gas phase chemistry rate equations are solved within PALM4U depends on the chosen chemical mechanism. chem_gasphase_mod.f90 is generated by a preprocessor that is based on the Kinetic Pre-Processor KPP (Damian et al., 2002, Sandu et al., 2006), Release 2.2.3 from November 2012 (http://people.cs.vt.edu/asandu/Software/Kpp/, kpp-2.2.3.tar.gz) and an adapted version of the KPP postprocessor KP4 (Jöckel et al, 2010, https://www.geosci-model-dev.net/3/717/2010/). This adapted Version of kp4 which converts the KPP-generated code to a PALM4U module is named kpp4palm. 
 
-Currently PALM-4U includes the following sample of chemistry mechanisms:[[BR]]
-  CBM4: Carbon Bond Mechanism (Gery et al. 1989, 32 compounds, 81 reactions)[[BR]]
-  SMOG: Photochemical smog mechanism (13 compounds, 12 reactions)[[BR]]
-  SIMPLE: Simplified versio of SMOG (9 compounds, 7 reactions)[[BR]]
-  PHSTAT: Photo-stationary state (3 compounds, 2 reactions)[[BR]]
+Currently PALM-4U includes the following sample of chemistry mechanisms:\\
+  CBM4: Carbon Bond Mechanism (Gery et al. 1989, 32 compounds, 81 reactions)\\
+  SMOG: Photochemical smog mechanism (13 compounds, 12 reactions)\\
+  SIMPLE: Simplified versio of SMOG (9 compounds, 7 reactions)\\
+  PHSTAT: Photo-stationary state (3 compounds, 2 reactions)\\
 
 Additionally 'mechanisms' are availble that describes the transport of one and two passive tracers[[BR]]
-   PASSIVE1: Passive tracers (1 compound, 0 reactions)[[BR]]
-   PASSIVE: Passive tracers (2 compounds, 0 reactions)[[BR]]
-and the mechanisms mentiones above plus one passive Tracer (e.g SIMPLE: Simplified of SMOG plus one Tracer named PM10 (10 compounds, 7 reactions)[[BR]]
+   PASSIVE1: Passive tracers (1 compound, 0 reactions)\\
+   PASSIVE: Passive tracers (2 compounds, 0 reactions)\\
+and the mechanisms mentiones above plus one passive Tracer (e.g SIMPLE: Simplified of SMOG plus one Tracer named PM10 (10 compounds, 7 reactions).
 
 For details about preparing a chem_gasphase_mod.f90 for  different chemical mechanism than the one that comes with checkout of PALM4U (currently PASSIVE) see Readme_KPP4PALM.odt in the PALM4U subdirectory UTIL/chemistry/gasphase_preproc. 
@@ -54 +54 @@
 
        NAMELIST /chemistry_parameters/  [[BR]]
-                                        bc_cs_b,                          &[[BR]]
-                                        bc_cs_t,                          &[[BR]]
-                                        call_chem_at_all_substeps,        &[[BR]]
-                                        chem_debug0,                      &[[BR]]
-                                        chem_debug1,                      &[[BR]]
-                                        chem_debug2,                      &[[BR]]
-                                        chem_gasphase_on,                 &[[BR]]
-                                        cs_heights,                       &[[BR]]
-                                        cs_name,                          &[[BR]]
-                                        cs_profile,                       &[[BR]]
-                                        cs_profile_name,                  &[[BR]]
-                                        cs_surface,                       &[[BR]]
-                                        cs_surface_initial_change,        &[[BR]]
-                                        cs_vertical_gradient_level,       &[[BR]]
-                                        daytype_mdh,                      &[[BR]]
-                                        decycle_chem_lr,                  &[[BR]]
-                                        decycle_chem_ns,                  &[[BR]]
-                                        decycle_method,                   &[[BR]]
-                                        do_emis                           &[[BR]]
-                                        emiss_factor_main,                &[[BR]]
-                                        emiss_factor_side,                &[[BR]]
-                                        icntrl,                           &[[BR]]
-                                        main_street_id,                   &[[BR]]
-                                        max_street_id,                    &[[BR]]
-                                        mode_emis,                        &[[BR]]
-                                        my_steps,                         &[[BR]]
-                                        nest_chemistry,                   &[[BR]]
-                                        rcntrl,                           &[[BR]]
-                                        side_street_id,                   &[[BR]]
-                                        photolysis_scheme,                &[[BR]]
-                                        wall_csflux,                      &[[BR]]
-                                        cs_vertical_gradient,             &[[BR]]
-                                        top_csflux,                       &[[BR]]
-                                        surface_csflux,                   &[[BR]]
-                                        surface_csflux_name,              &[[BR]]
-                                        time_fac_type,                    &[[BR]]
+                                        bc_cs_b,                          &\\
+                                        bc_cs_t,                          &\\
+                                        call_chem_at_all_substeps,        &\\
+                                        chem_debug0,                      &\\
+                                        chem_debug1,                      &\\
+                                        chem_debug2,                      &\\
+                                        chem_gasphase_on,                 &\\
+                                        cs_heights,                       &\\
+                                        cs_name,                          &\\
+                                        cs_profile,                       &\\
+                                        cs_profile_name,                  &\\
+                                        cs_surface,                       &\\
+                                        cs_surface_initial_change,        &\\
+                                        cs_vertical_gradient_level,       &\\
+                                        daytype_mdh,                      &\\
+                                        decycle_chem_lr,                  &\\
+                                        decycle_chem_ns,                  &\\
+                                        decycle_method,                   &\\
+                                        do_emis                           &\\
+                                        emiss_factor_main,                &\\
+                                        emiss_factor_side,                &\\
+                                        icntrl,                           &\\
+                                        main_street_id,                   &\\
+                                        max_street_id,                    &\\
+                                        mode_emis,                        &\\
+                                        my_steps,                         &\\
+                                        nest_chemistry,                   &\\
+                                        rcntrl,                           &\\
+                                        side_street_id,                   &\\
+                                        photolysis_scheme,                &\\
+                                        wall_csflux,                      &\\
+                                        cs_vertical_gradient,             &\\
+                                        top_csflux,                       &\\
+                                        surface_csflux,                   &\\
+                                        surface_csflux_name,              &\\
+                                        time_fac_type,                    &\\