Changeset 83 for palm/trunk/DOC/app


Ignore:
Timestamp:
Apr 19, 2007 4:27:07 PM (16 years ago)
Author:
raasch
Message:

New:
---

Changed:


PALM can be generally installed on any kind of Linux-, IBM-AIX-, or NEC-SX-system by adding appropriate settings to the configuration file.

Scripts are also running under the public domain ksh.

All system relevant compile and link options as well as the host identifier (local_host) are specified in the configuration file.

Filetransfer by ftp removed (options -f removed from mrun and mbuild).

Call of (system-)FLUSH routine moved to new routine local_flush.

return_addres and return_username are read from ENVPAR-NAMELIST-file instead of using local_getenv.

Preprocessor strings for different linux clusters changed to "lc", some preprocessor directives renamed (new: intel_openmp_bug), preprocessor directives for old systems removed

advec_particles, check_open, cpu_log, cpu_statistics, data_output_dvrp, flow_statistics, header, init_dvrp, init_particles, init_1d_model, init_dvrp, init_pegrid, local_getenv, local_system, local_tremain, local_tremain_ini, modules, palm, parin, run_control

new:
local_flush

mbuild, mrun

Errors:


Location:
palm/trunk/DOC/app
Files:
7 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/DOC/app/chapter_3.6.html

    r62 r83  
    11<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
    22<html><head>
    3 <meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
    4 chapter 3.6</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;10583400"> <meta name="CHANGED" content="20041112;15013624"> <meta name="KEYWORDS" content="parallel LES model"> <style>
     3<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 3.6</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;10583400"> <meta name="CHANGED" content="20041112;15013624"> <meta name="KEYWORDS" content="parallel LES model"> <style>
    54<!--
    65@page { size: 21cm 29.7cm }
     
    2221are copied to
    2322directories on the local host corresponding to the specifications
    24 in the configuration file (in this case the file attribute <a href="http://www.muk.uni-hannover.de/institut/software/mrun_beschreibung.html#tr">tr</a>
    25 does not cause transfer to another computer). </p>
     23in the configuration file (in this case the file attribute<span style="font-family: Courier New,Courier,monospace;"> tr&nbsp;</span>does not cause transfer to another computer). </p>
    2624<p style="line-height: 100%;">Since model runs usually
    2725require large
  • palm/trunk/DOC/app/chapter_4.0.html

    r62 r83  
    11<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
    22<html><head>
    3 <meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
    4 chapter 4.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;14214479"> <meta name="CHANGED" content="20041112;15151993"> <meta name="KEYWORDS" content="parallel LES model"> <style>
     3<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 4.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20040809;14214479"> <meta name="CHANGED" content="20041112;15151993"> <meta name="KEYWORDS" content="parallel LES model"> <style>
    54<!--
    65@page { size: 21cm 29.7cm }
    76-->
    87</style></head>
    9 
    108<body style="direction: ltr;" lang="en-US"><h2 style="line-height: 100%;"><font size="4">4.0
    119Steering parameters</font></h2>
     
    2119</p><p style="line-height: 100%;">These data are
    2220assigned with the help of
    23 so-called ?&ldquo;NAMELIST-driven input&rdquo;? (FORTRAN -
     21so-called&nbsp;&ldquo;NAMELIST-driven input&rdquo; (FORTRAN -
    2422NAMELIST &ndash;
    25 input). The ?gew&auml;hlten? values of the model parameters are
     23input). The chosen values of the model parameters are
    2624written
    2725into an ASCII file with fixed format, which is expected by the model as
  • palm/trunk/DOC/app/chapter_4.1.html

    r75 r83  
    559559</td> <td style="vertical-align: top;">R</td>
    560560<td style="vertical-align: top;"><span style="font-style: italic;">1.0</span></td> <td style="vertical-align: top;"> <p>Horizontal grid
    561 spacing along the x-direction (in m).&nbsp; </p> <p>Along
    562 x-direction only a constant grid spacing is allowed.</p> </td>
     561spacing along the y-direction (in m).&nbsp; </p> <p>Along y-direction only a constant grid spacing is allowed.</p> </td>
    563562</tr> <tr> <td style="vertical-align: top;">
    564563<p><a name="dz"></a><b>dz</b></p>
  • palm/trunk/DOC/app/chapter_4.6.html

    r75 r83  
    578578</td> <td style="vertical-align: middle;" width="16%">
    579579<p><i>1.0</i></p> </td> <td style="vertical-align: middle;" width="57%"> <p>Horizontal
    580 grid spacing along the x-direction (in m). <br> </p> </td>
     580grid spacing along the y-direction (in m). <br> </p> </td>
    581581</tr> <tr> <td style="vertical-align: middle;" width="15%"> <p><a href="chapter_4.1.html#dz"><b>dz</b></a></p>
    582582</td> <td style="vertical-align: middle;" width="5%">
  • palm/trunk/DOC/app/chapter_5.0.html

    r62 r83  
    11<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
    22<html><head>
    3 <meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM
    4 chapter 5.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20041103;12380720"> <meta name="CHANGED" content="20041123;15532356"> <meta name="KEYWORDS" content="parallel LES model"> <style>
     3<meta http-equiv="CONTENT-TYPE" content="text/html; charset=windows-1252"><title>PALM chapter 5.0</title> <meta name="GENERATOR" content="StarOffice 7 (Win32)"> <meta name="AUTHOR" content="Siegfried Raasch"> <meta name="CREATED" content="20041103;12380720"> <meta name="CHANGED" content="20041123;15532356"> <meta name="KEYWORDS" content="parallel LES model"> <style>
    54<!--
    65@page { size: 21cm 29.7cm }
     
    1918local host. Alternatively, <span style="font-weight: bold;">mrun</span>
    2019can also be used to start PALM on the local host in interactive mode or
    21 as a batch job.</font><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Requirements</span></font></p><p style="line-height: 100%;"><font color="#000000">The
     20as a batch job (if a queueing system like NQS, PBS, or LoadLeveler is available).</font><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Requirements</span></font></p><p style="line-height: 100%;"><font color="#000000">The
    2221installation and operation of PALM requires at mimimum (on both, the
    23 local and the remote host, unless stated otherwise):</font></p><ol><li><font color="#000000">The AT&amp;T Korn-shell (ksh) must be
    24 available under<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">.
    25 Most of the current Linux distributions are using the public domain
    26 Korn-shell (pdksh). The PALM scripts <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span> do not work
    27 with the pdksh! Please replace it by the AT&amp;T ksh. If the
    28 AT&amp;T ksh path is different from<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">,
    29 please modify the first lines in <span style="font-weight: bold;">mrun</span>
    30 and <span style="font-weight: bold;">mbuild</span>,
    31 respectively.</font></li><li><font color="#000000">The
     22local and the remote host, unless stated otherwise):</font></p><ol><li><font color="#000000">The Korn-shell (AT&amp;T ksh or public domain ksh) must be
     23available under<span style="font-family: Courier New,Courier,monospace;"> </span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">/bin/ksh</font><font color="#000000">.<span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-family: Courier New,Courier,monospace;"></span></font><font color="#000000"><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span></font></li><li><font color="#000000">The
    3224NetCDF-library with version number not earlier than 3.6.0-p1 (for
    3325NetCDF, see under <a href="http://www.unidata.ucar.edu/software/netcdf/">www.unidata.ucar.edu</a>).</font></li><li><font color="#000000">A FORTRAN90/95 compiler.</font></li><li><font color="#000000">The Message Passing Interface (MPI), at
     
    5547as well as on the Linux cluster of IMUK (<span style="font-style: italic;">lcmuk</span>) and Tokyo
    5648Institute of Technology (<span style="font-style: italic;">lctit</span>).
    57 The strings given in brackets are the systems names under which <span style="font-weight: bold;">mrun</span> indentifies the
    58 different hosts. mrun should also work on other systems, but this
    59 requires some modifications in the scripts <span style="font-weight: bold;">mrun</span>, <span style="font-weight: bold;">mbuild</span>, and <span style="font-weight: bold;">subjob</span>. Future PALM
    60 versions will allow to configure the scripts for different kinds of
    61 systems by just using a configuration file.</font><p style="line-height: 100%;"><font color="#000000">The
     49The strings given in brackets are the systems names (host identifiers) under which <span style="font-weight: bold;">mrun</span> identifies the
     50different hosts.<br><br>You can also use <span style="font-weight: bold;">mrun</span>/PALM on other Linux-Cluster, IBM-AIX, or NEC-SX machines. See <a href="#configuration_for_other_machines">below</a> on how to configure <span style="font-weight: bold;">mrun</span> for other machines. However, these configurations currently (version 3.2a) allow to run PALM in interactive mode only.<br><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span style="font-weight: bold;"></span></font><p style="line-height: 100%;"><font color="#000000">The
    6251examples given in this chapter refer to an
    6352installation of PALM on an IMUK Linux workstation and the IBM-Regatta
     
    136125probably be restricted to the PALM developers.</span><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Package
    137126Configuration</span></font></p><p style="line-height: 100%;"><font color="#000000">To
    138 use the PALM scripts, the PATH variable has to be extended and the
    139 environment variable PALM_BIN has to be set (on local and remote host)
     127use the PALM scripts, the <span style="font-family: Courier New,Courier,monospace;">PATH</span>-variable has to be extended and the
     128environment variable<span style="font-family: Courier New,Courier,monospace;"> PALM_BIN </span>has to be set (on local and remote host)
    140129in the respective profile of the users default shell (e.g. in<span style="font-family: Courier New,Courier,monospace;"> .profile</span>,
    141130if<span style="font-family: Courier New,Courier,monospace;">
     
    143132PATH=$HOME/palm/current_version/trunk/SCRIPTS:$PATH</font><font color="#000000"><br><span style="font-family: Courier New,Courier,monospace;">export
    144133PALM_BIN=</span></font><font style="font-family: Courier New,Courier,monospace;" color="#000000">$HOME/palm/current_version/trunk/SCRIPTS</font></p><p style="line-height: 100%;"><font color="#000000">You
    145 may habe to login again in order to activate these settings.</font></p><font color="#000000">On the local and on the remote host, some
    146 small helper/utility programs have to be installed, which are e.g.
    147 later used by <span style="font-weight: bold;">mrun</span>
    148 or for PALM data postprocessing. The installation is done by <span style="font-weight: bold;">mbuild</span>. This script
     134may have to login again in order to activate these settings.</font></p><font color="#000000">On the local and on the remote host, some
     135small helper/utility programs have to be installed, which are&nbsp;later used by <span style="font-weight: bold;">mrun</span>&nbsp;e.g. for PALM data postprocessing. The installation is done by <span style="font-weight: bold;">mbuild</span>. This script
    149136requires a configuration file<span style="font-family: Courier New,Courier,monospace;">
    150137.mrun.config</span>, which will be also used by <span style="font-weight: bold;">mrun</span> in the
     
    155142typical installation parameters
    156143like compiler name, compiler options, etc.
    157 for a set of different remote hosts. Please edit this file, uncomment
     144for a set of different (remote) hosts. Please edit this file, uncomment
    158145lines like</font><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">#%remote_username
    159146&nbsp;&lt;replace by your ... username&gt; &nbsp;
    160 &lt;remote-computer-shortcut&gt;</div><p style="line-height: 100%;"><font color="#000000">by
     147&lt;host identifier&gt;</div><p style="line-height: 100%;"><font color="#000000">by
    161148removing the first hash (<span style="font-family: Courier New,Courier,monospace;">#</span>)
    162149character and replace the string "<span style="font-family: Courier New,Courier,monospace;">&lt;replace
    163150by ...&gt;</span>" by your username on the respective host
    164 given in the <span style="font-family: Courier New,Courier,monospace;">&lt;remote-computer-shortcut&gt;</span>.
     151given in the <span style="font-family: Courier New,Courier,monospace;">&lt;host identifier&gt;</span>.
    165152You only have to uncomment lines for those hosts on which you intend to
    166153use PALM.</font></p><p style="line-height: 100%;"><font color="#000000">After modifying the configuration file, the
    167154respective executables are generated by executing</font></p><p style="line-height: 100%; margin-left: 40px; font-family: Courier New,Courier,monospace;"><font color="#000000">mbuild -u -h lcmuk<br>mbuild -u -h ibmh</font></p><p style="line-height: 100%;"><font color="#000000">The
    168 second call also copies the PALM scripts like <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span> to the remote
     155second call also copies the PALM scripts (like <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span>) to the remote
    169156host.</font></p><p style="line-height: 100%;"></p><p style="line-height: 100%;"><font color="#000000"><span style="font-weight: bold; text-decoration: underline;">Pre-Compilation
    170157of PALM Code</span></font></p><font color="#000000">
     
    265252and time displayed at the top of the file header. <font color="#000000">If
    266253the file contents are identical, the installation is successfully
    267 completed.</font>
     254completed.<br><br></font><p style="line-height: 100%;"></p><p style="line-height: 100%; font-weight: bold; text-decoration: underline;"><font color="#000000"><a name="configuration_for_other_machines"></a>Configuration for other machines</font></p><font color="#000000">Starting
     255from version 3.2a, beside the default hosts (HLRN, etc.), PALM can also
     256be installed and run on other Linux-Cluster-, IBM-AIX, or
     257NEC-SX-systems. To configure PALM for a non-default host only requires
     258to add some lines to the configuration file<span style="font-family: Courier New,Courier,monospace;"> .mrun.config</span>.<br><br>First,
     259you have to define the host identifier (a string of arbitrary length)
     260under which your local host shall be identified by adding a line<br><br></font><div style="margin-left: 40px;"><span style="font-family: Courier New,Courier,monospace;">%host_identifier &nbsp;&lt;hostname&gt; &nbsp;&lt;host identifier&gt;</span><br></div><br>to the configuration file (best to do this in the section where the other default host identifiers are defined). Here<span style="font-family: Courier New,Courier,monospace;"> &lt;hostname&gt; </span>must be the name of your local host as provided by the unix-command "<span style="font-family: Courier New,Courier,monospace;">hostname</span>". The first characters of<span style="font-family: Courier New,Courier,monospace;"> &lt;host identifier&gt; </span>have to be "<span style="font-family: Courier New,Courier,monospace;">lc</span>", if your system is (part of) a linux-cluster, "<span style="font-family: Courier New,Courier,monospace;">ibm</span>", or "<span style="font-family: Courier New,Courier,monospace;">nec</span>"
     261in case of an IBM-AIX- or NEC-SX-system, respectively. For example, if
     262you want to install on a linux-cluster, the line may read as<br><br><div style="margin-left: 40px;">%host_identifier &nbsp;foo &nbsp;lc_bar<br></div><br>In
     263the second step, you have to give all informations neccessary to
     264compile and run PALM on your local host by adding an additional section
     265to the configuration file:<br><br><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">%remote_username&nbsp;&nbsp; &lt;1&gt;&nbsp; &nbsp; &nbsp; &lt;host identifier&gt; parallel<br>%tmp_user_catalog&nbsp; &lt;2&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%compiler_name&nbsp;&nbsp;&nbsp;&nbsp; &lt;3&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%compiler_name_ser &lt;4&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%cpp_options&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     266&lt;5&gt; &nbsp; &nbsp; &nbsp;&lt;host identifier&gt;&nbsp;parallel<br>%netcdf_inc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &lt;6&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%netcdf_lib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &lt;7&gt; &nbsp;&nbsp;&nbsp;&nbsp; &lt;host identifier&gt; parallel<br>%fopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     267&lt;8&gt; &nbsp;&nbsp;&nbsp; &nbsp;&lt;host identifier&gt; parallel<br>%lopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     268&nbsp;&lt;9&gt; &nbsp; &nbsp; &nbsp;&lt;host identifier&gt; parallel<br></div><br>The
     269section consists of four columns each separated by one or more blanks.
     270The first column gives the name of the respective environment variable
     271used by <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span>,
     272while the second column defines its value. The third column has to be
     273the host identifier as defined above, and the last column in each line
     274must contain the string "<span style="font-family: Courier New,Courier,monospace;">parallel</span>".
     275Otherwise, the respective line(s) will be interpreted as belonging to
     276the setup for compiling and running a serial (non-parallel) version of
     277PALM.<br><br>All brackets have to be replaced by the appropriate settings for your local host:<br><ul><li><span style="font-family: Courier New,Courier,monospace;">&lt;1&gt; </span>is the username on your LOCAL host</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;2&gt; </span>is the temporary directory in which PALM runs will be carried out</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;3&gt; </span>is the compiler name which generates parallel code</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;4&gt; </span>is the compiler name for generating serial code</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;5&gt; </span>are
     278the preprocessor options to be invoked. In most of the cases, it will
     279be neccessary to adjust the MPI data types to double precision by
     280giving <span style="font-family: Courier New,Courier,monospace;">-DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION</span>. To switch on the NetCDF support, you also have to give <span style="font-family: Courier New,Courier,monospace;">-D__netcdf</span> and <span style="font-family: Courier New,Courier,monospace;">-D__netcdf_64bit</span> (if you like to have 64bit NetCDF output).</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;6&gt; </span>is the compiler option for specifying the include path to search for the NetCDF module/include files</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;7&gt; </span>are the linker options to search for the NetCDF library</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;8&gt; </span>are the general compiler options to be used. You should allways switch on double precision (e.g. <span style="font-family: Courier New,Courier,monospace;">-r8</span>) and code optimization (e.g. <span style="font-family: Courier New,Courier,monospace;">-O2</span>).</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;9&gt; </span>are the linker options</li><li><span style="font-family: Courier New,Courier,monospace;">&lt;host identifier&gt; </span>is the host identifier as defined before</li></ul><br>A typical example may be:<br><div style="margin-left: 40px; font-family: Courier New,Courier,monospace;">%remote_username&nbsp;&nbsp;
     281raasch &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;
     282&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;lc_bar parallel<br>%tmp_user_catalog&nbsp;
     283/tmp&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
     284parallel<br>%compiler_name&nbsp;&nbsp;&nbsp;&nbsp;
     285mpif90&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
     286parallel<br>%compiler_name_ser
     287ifort&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
     288parallel<br>%cpp_options&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     289-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf_64bit&nbsp;&nbsp;
     290lc_bar parallel<br>%netcdf_inc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     291-I:/usr/local/netcdf/include&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     292lc_bar parallel<br>%netcdf_lib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     293-L/usr/local/netcdf/lib:-lnetcdf&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     294lc_bar parallel<br>%fopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     295-axW:-cpp:-openmp:-r8:-nbs &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;
     296&nbsp;&nbsp;&nbsp; lc_bar parallel<br>%lopts&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     297-axW:-cpp:-openmp:-r8:-nbs:-Vaxlib&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;lc_bar
     298parallel<br></div><br>Currently (version 3.2a), depending on the MPI
     299version which is running on your local host, the options for the
     300execution command (which may be <span style="font-family: Courier New,Courier,monospace;">mpirun</span> or <span style="font-family: Courier New,Courier,monospace;">mpiexec</span>)
     301may have to be adjusted manually in the mrun-script. A future version
     302will allow to give the respective settings in the configuration file.
    268303<p style="line-height: 100%;">If you have any problems
    269304with the PALM
    270305installation, the members of the PALM working group are pleased to
    271306help you. &nbsp; </p>
    272 <hr><p style="line-height: 100%;"><font color="#000080"><font color="#000080"><a href="chapter_4.6.html"><font color="#000080"><img src="left.gif" name="Grafik1" align="bottom" border="2" height="32" width="32"></font></a><a href="Inhaltsverzeichnis.html"><font color="#000080"><img src="up.gif" name="Grafik2" align="bottom" border="2" height="32" width="32"></font></a><a href="chapter_5.1.html"><font color="#000080"><img src="right.gif" name="Grafik3" align="bottom" border="2" height="32" width="32"></font></a></font></font></p>
     307<hr><p style="line-height: 100%;"><font color="#000080"><font color="#000080"><a href="chapter_4.6.html"><font color="#000080"><img src="left.gif" name="Grafik1" align="bottom" border="2" height="32" width="32"></font></a><a href="index.html"><font color="#000080"><img style="border: 2px solid ; width: 32px; height: 32px;" alt="up" src="up.gif" name="Grafik2"></font></a><a href="chapter_5.1.html"><font color="#000080"><img src="right.gif" name="Grafik3" align="bottom" border="2" height="32" width="32"></font></a></font></font></p>
    273308<p style="line-height: 100%;"><i>Last
    274309change:&nbsp;</i> $Id$</p>
  • palm/trunk/DOC/app/chapter_5.1.html

    r82 r83  
    55<meta content="Siegfried Raasch" name="AUTHOR"> <meta content="20041103;12395815" name="CREATED"> <meta content="20041119;12321236" name="CHANGED"> <meta content="parallel LES model" name="KEYWORDS"></head>
    66<body style="direction: ltr;" lang="en-US"><h3>5.1
    7 Installation of new / other versions</h3>
     7Installation of new / other versions, version update</h3>
    88<p>The PALM&nbsp;group announces code revisions by emails
    99send to the
     
    1212Details about new releases can be found in the
    1313<a href="../tec/technical_documentation.html">technical/numerical
    14 documentation</a>.</p><p>If you have previously checked out the most recent (at that time)  PALM version by using</p><p style="margin-left: 40px; font-family: Courier New,Courier,monospace;">svn checkout ...../palm/trunk trunk &nbsp; &nbsp; ,</p><p>you can easily make an update to the most recent PALM version by
     14documentation</a>.</p><p>Generally,
     15there are two ways of installing new / other versions. You can install
     16a version from the list of available PALM releases or you can update
     17your current installation with the newest developer version of PALM.</p><p>If you have previously checked out the most recent (at that time)  PALM developer version by using</p><p style="margin-left: 40px; font-family: Courier New,Courier,monospace;">svn checkout ...../palm/trunk trunk &nbsp; &nbsp; ,</p><p>you can easily make an update to the newest version by
    1518changing into
    1619the working directory<span style="font-family: Courier New,Courier,monospace;">
     
    2124The update may fail due&nbsp;the&nbsp;<span style="font-weight: bold;">subversion</span> rules, if
    2225you have modified the contents of<span style="font-family: Courier New,Courier,monospace;"> trunk</span>.
    23 In case of any conflicts, please refer to the <span style="font-weight: bold;">subversion</span>
     26In case of any conflicts with the repository, please refer to the <span style="font-weight: bold;">subversion</span>
    2427documentation on how to remove them.&nbsp;In order to avoid such
    2528conflicts, modifications of the default PALM code should be omitted and
     
    3639<p>However, this would require to carry out again the complete
    3740installation process described in chapter 5.0. So far, differet
    38 versions of PALM cannot be used at the same time.</p><p>After
     41versions of PALM cannot be used at the same time. The PALM releases from<span style="font-family: Courier New,Courier,monospace;"> palm/tags&nbsp;</span>never have to be updated with "<span style="font-family: Courier New,Courier,monospace;">svn update</span>", since these releases are frozen!</p><p>After
    3942updating the working copy, please check for any differences between
    4043your current configuration file (<span style="font-family: Courier New,Courier,monospace;">.mrun.config</span>)
     
    5053-u<br>mbuild</blockquote>
    5154<p>on all remote hosts listed in the configuration file<span style="font-family: Courier New,Courier,monospace;">
    52 .mrun.config</span>. </p>
     55.mrun.config</span>.</p><p>You can use "subversion" for code comparison between the different versions. Also,&nbsp;modified code can be committed to the repository, but this is restricted to&nbsp;PALM developers. </p>
    5356<p>As a last step, a suitable test run should be carried out. It
    5457should
  • palm/trunk/DOC/app/index.html

    r77 r83  
    148148<p><span style="font-family: Thorndale;" lang="EN-GB">Current
    149149model
    150 version:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 3.2<br>For date of last change see bottom line of each page. <o:p></o:p></span></p>
     150version:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 3.2a<br>For date of last change see bottom line of each page. <o:p></o:p></span></p>
    151151<div style="text-align: center;" class="MsoNormal" align="center"><span style="font-family: Thorndale;">
    152152<hr align="center" size="2" width="100%"></span></div>
     
    212212of the model <o:p></o:p></span></p>
    213213<p style="margin: 0cm 0cm 5.1pt 72pt;"><span style="font-family: Thorndale;"><a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_5.1.html">5.1</a>
    214 Installation of <span class="SpellE">new</span><span class="SpellE"></span>
    215 <span class="SpellE">versions</span><o:p></o:p></span></p><font color="#000000">&nbsp;
     214Installation of <span class="SpellE">new</span><span class="SpellE"></span> / other
     215<span class="SpellE">versions, version update</span><o:p></o:p></span></p><font color="#000000">&nbsp;
    216216<br>
    217217&nbsp;
Note: See TracChangeset for help on using the changeset viewer.