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Changeset 481 for palm


Ignore:
Timestamp:
Feb 5, 2010 3:52:33 AM (15 years ago)
Author:
raasch
Message:

file structure of technical documentation revised; documents concerning numerical methods added

Location:
palm/trunk
Files:
17 added
2 edited

Legend:

Unmodified
Added
Removed

  • palm/trunk/DOC/tec/technical_documentation.html

    r414 r481  
    11<!DOCTYPE html PUBLIC "-//w3c//dtd html 4.0 transitional//en">
    22<html><head>
     3
     4
    35
    46<meta content="text/html; charset=ISO-8859-1" http-equiv="Content-Type"> <meta content="Mozilla/4.73 [en] (X11; U; HP-UX B.10.20 9000/782) [Netscape]" name="GENERATOR"> <meta content="Siegfried Raasch" name="Author"> <meta content="parallel LES model" name="Keywords"><title>PALM technical/numerical documentation</title></head><body><font size="+4">PALM&nbsp;&nbsp;
    … …  
    1113<br>&nbsp;
    1214<br><table nosave="" cellpadding="0" cellspacing="0"> <caption>&nbsp; <br> </caption><tbody>
    13 </tbody><tbody> </tbody> <tbody> <tr nosave=""> <td nosave=""><b>Current
    14 model version:</b></td> <td><span style="font-weight: bold;">3.7 (rev 392)</span></td> </tr>
     15</tbody><tbody> </tbody> <tbody> <tr nosave=""> <td nosave=""><b>Current fixed release:</b></td> <td><span style="font-weight: bold;">3.7<br>
     16</span></td> </tr>
    1517<tr nosave=""> <td nosave=""><b>Last
    1618change of this document</b>:&nbsp;</td> <td nosave=""><b>$Id$</b></td> </tr>
    … …  
    2426How to change the model source
    2527code </p> <p><a href="#Kapitel3.0">3.0</a>&nbsp;
    26 Description of selected parts
    27 of
    28 the model source code <br>
     28Description of selected model numerics<br>
    2929&nbsp;</p>
    3030</ul><b></b><br>
    … …  
    3232<h2><a name="Kapitel1.0"></a>1.0&nbsp;
    3333History of changes</h2>
    34 The following table documents all changes to the model since July, 7th
    35 1998. Entries in the fourth column specify the type of the change:
     34The following table documents all changes to the PALM repository since 2009. Older changes can be found <a href="tec_doc_1998-2008.html">here</a>.<br>
     35<br>
     36Entries in the fourth column specify the type of the change:
    3637change&nbsp;
    3738of existing code (C), new code (N) or bugfix (B). More detailed
    3839information
    39 about the changes may be found in the header comment lines of the
     40about the changes may sometimes be found in the header comment lines of the
    4041respective
    4142routines.
    4243<br>&nbsp;
    43 <br><table nosave="" style="width: 100%;" border="1"> <caption>&nbsp; <br> </caption><tbody>
    44 </tbody><tbody> </tbody> <tbody> <tr> <td><b>date</b></td>
    45 <td><b>author</b></td> <td><b>model</b>
    46 <br> <b>version</b></td> <td><b>type</b></td>
    47 <td><b>description</b></td> <td><b>affected
    48 routines</b></td> </tr> <tr nosave="" valign="top"> <td>06/07/98</td> <td>SR</td>
    49 <td>1.0</td> <td>C</td> <td nosave="">Änderung
    50 von Default-Werten
    51 (initializing_actions, end_time,
    52 fcl_factor, use_prior_plot1d_parameters), zusÀtzliche
    53 ÃœberprÃŒfung
    54 von Parametern auf ZulÀssigkeit (prandtl_layer, psolver, nx,
    55 ny,
    56 nz,
    57 fcl_factor), Höhe der Schnittebenen der Horizontalschnitte
    58 wird
    59 auf
    60 Plots exakt ausgegeben (uv- bzw. w-Gitter).</td> <td>modules,
    61 check_parameters, plot_2d</td> </tr> <tr nosave="" valign="top"> <td>"</td> <td>SR</td>
    62 <td>1.0</td> <td>N</td> <td>Neues Modul
    63 test_variables wird in (fast) allen
    64 Programmteilen benutzt
    65 (USE). <b>Wichtig</b>: dieses Modul steht in der Datei <tt>module_test.f90.
    66 D</tt>iese Datei muß in der mrun- und add_library -
    67 Konfigurationsdatei
    68 bei der Variablen <tt>module_files</tt>
    69 aufgefÃŒhrt werden.</td> <td nosave="">(fast)
    70 alle&nbsp; <br>
    71 Neu: module_test</td> </tr> <tr nosave="" valign="top"> <td>16/07/98</td> <td>SR</td>
    72 <td>1.0</td> <td>N</td> <td nosave="">Anpassung
    73 an die T3E-Rechner in Juelich (cpp -
    74 Direktiven)</td> <td>advec_s_bc, check_open,
    75 check_parameters, cpu_zeitmessung,
    76 init_pegrid,
    77 local_getenv, local_system, local_tremain, local_tremain_ini, poisfft</td>
    78 </tr> <tr nosave="" valign="top"> <td>24/07/98</td>
    79 <td>MS</td> <td>1.0</td> <td>C</td>
    80 <td nosave="">Anpassung des Druckloesealgorithmusses an
    81 Vorgehensweise von
    82 Schmidt, Schumann und Volkert (DFVLR-Mitteilung 84-15, S.
    83 20-26)&nbsp;</td> <td>poisfft</td> </tr> <tr nosave="" valign="top"> <td>27/07/98</td>
    84 <td>MS</td> <td>1.0</td> <td>C</td>
    85 <td nosave="">Berechnung von l in maketri geschieht nun
    86 ausserhalb der k-Schleife,
    87 da unabhaengig von k, dadurch Rechenzeitersparnis&nbsp;</td> <td>poisfft</td>
    88 </tr> <tr nosave="" valign="top"> <td>05/08/98</td>
    89 <td>SR</td> <td>1.0</td> <td>C</td>
    90 <td>Entfernung der Sonderbehandlung der Advektionsterme
    91 (Piascek-Williams)
    92 bei k=1. Terme werden nun ÃŒberall gleich berechnet. Evtl.
    93 leichte
    94 Erhöhung der Varianzen in OberflÀchennÀhe.</td>
    95 <td nosave="">advec_u_pw, advec_v_pw, advec_w_pw</td>
    96 </tr> <tr nosave="" valign="top"> <td nosave="">"</td> <td>SR</td> <td>1.0</td>
    97 <td>C</td> <td>Mischungsweganpassung (s.
    98 adjust_mixing_length) erfolgt nur
    99 noch bei
    100 k=1. Unrealistische sekundÀre Maxima in den Km-Profilen
    101 oberhalb
    102 der
    103 Prandtl-Schicht werden damit vermieden. Leichte Änderungen in
    104 den
    105 oberflÀchennahen Turbulenzgrößen sind die
    106 Folge.</td> <td>diffusivities</td> </tr> <tr nosave="" valign="top"> <td>"</td> <td>SR</td>
    107 <td>1.0</td> <td>B</td> <td>Falsche
    108 Berechnung der benötigten CPU-Zeit pro Sekunde
    109 simulierter
    110 Zeit bei FortsetzungslÀufen korrigiert.&nbsp; <p>Berechnung
    111 von cross_uxmin(1) und cross_uxmax(1) aus den
    112 Werten von
    113 ug und vg entfernt. Lieferte falsche Wertebereiche fÃŒr Plots
    114 von
    115 Vertikalprofilen,
    116 wenn im ersten Koordinatenkreuz nicht die Windgeschwindigkeiten
    117 gezeichnet
    118 wurden.</p> </td> <td nosave="">header,
    119 check_parameters</td> </tr> <tr nosave="" valign="top"> <td nosave="">"</td> <td>SR</td>
    120 <td>1.0</td> <td>N</td> <td>Das
    121 erlaubte Maximum und Minimum der Rif-Zahl ist nun mittels
    122 der Initialparameter
    123 rif_max und rif_min einstellbar (Werte waren bisher fest auf -2.0, +1.0
    124 eingestellt).</td> <td>check_parameters, header,
    125 init_1d_model, modules, parin,
    126 prandtl_fluxes,
    127 read_var_list, write_var_list</td> </tr> <tr nosave="" valign="top"> <td nosave="">23/09/98</td>
    128 <td>SR</td> <td>1.0</td> <td>B</td>
    129 <td>Initialisierung von Feldern im Fall von initializing_action =
    130 "<i>set_constant_profiles</i>"
    131 und "<i>set_1d-model_profiles</i>" korrigiert.&nbsp; <p>2D-Plotausgabe
    132 von u* und theta* korrigiert. Hier wurden
    133 bisher falsche
    134 Felder herausgeschrieben.&nbsp; </p> <p>Bei
    135 SOR-Aufrufen war bisher dp nicht initialisiert.
    136 Entsprechend geÀndert.</p> </td> <td>init_3d_model,
    137 plot_2d, pres</td> </tr> <tr nosave="" valign="top"> <td>"</td> <td>SR</td>
    138 <td>1.0</td> <td>C</td> <td nosave="">Ausgabeformate
    139 fÃŒr Statistik-Ausgaben auf
    140 Datei RUN_CONTROL
    141 um einige Kommastellen erweitert.&nbsp; <p>Lieferung von
    142 ausfÃŒhrlicheren Informationen bei
    143 Programmabbruch
    144 durch Unterschreitung des minimal erlaubten Zeitschritts.</p> </td>
    145 <td>run_control, timestep</td> </tr> <tr nosave="" valign="top"> <td nosave="">"</td>
    146 <td>SR</td> <td>1.0</td> <td>N</td>
    147 <td>Rechnungen mit geneigter Ebene zur Simulation von
    148 KaltluftabflÃŒssen
    149 sind erlaubt. Gestartet und gesteuert werden sie mit dem
    150 Intialisierungsparameter <tt>alpha_surface</tt>.
    151 Realisiert wird die geneigte Ebene durch entsprechende
    152 SchrÀgstellung
    153 des Schwerkraftvektors. Dadurch erhÀlt auch die u-Komponente
    154 der
    155 Windgeschwindigkeit
    156 einen Anteil der Auftriebskraft.&nbsp; <p>Diese
    157 Implementierung ist noch nicht abgeschlossen. Die
    158 Simulation von
    159 KaltluftabflÃŒssen erfordert bisher noch Eingriffe "von Hand".</p>
    160 </td> <td>buoyancy, check_parameters, header, leap_frog,
    161 modules,
    162 parin, prandtl_fluxes,
    163 read_var_list, write_var_list</td> </tr> <tr nosave="" valign="top"> <td>15/12/98</td> <td>SR</td>
    164 <td>1.0</td> <td>N</td> <td>Vereinbarung
    165 einer Cache-Layer zur schnelleren binÀren
    166 I/O auf
    167 T3E-Rechnern.&nbsp; <p>Ermittelung wahrer I/O-Zeiten
    168 fÃŒr binÀre
    169 Ein-/Ausgabe auf
    170 T3E-Rechnern mit TIMEF.</p> </td> <td nosave="">check_open,&nbsp;
    171 <br>cpu_zeitmessung, init_3d_model, write_3d_model</td> </tr>
    172 <tr nosave="" valign="top"> <td nosave="">"</td>
    173 <td>SR</td> <td>1.0</td> <td>B</td>
    174 <td>Bekanntgabe von run_description_header an alle
    175 PE's.&nbsp; <p>Diese ProgrammÀnderung erfordert auf
    176 T3E-Rechnern
    177 zwingend den
    178 Einsatz der MPI-Version mpt.1.2.0.1. In dieser neuen Version tritt auch
    179 der alte Fehler in MPI_ALLREDUCE nicht mehr auf, so daß ab
    180 jetzt
    181 mpt.1.1.0.1 nicht mehr verwendet werden muß.</p> </td>
    182 <td>parles</td> </tr> <tr nosave="" valign="top"> <td nosave="">05/02/99</td>
    183 <td>SR</td> <td>1.1</td> <td>C/N</td>
    184 <td>Implementierung des Upstream-Spline- Verfahrens zur Advektion
    185 von Impuls
    186 und skalaren Größen (neue UP's, s. rechts).
    187 Berechnung von
    188 Variablen
    189 fÃŒr spezielle Advektionsverfahren in eigenstÀndiges
    190 UP
    191 ausgelagert
    192 (<tt>init_advec</tt> + eigenes Modul <tt>advection</tt>).
    193 Reines
    194 Euler-/Upstream-Verfahren
    195 kann gerechnet werden.&nbsp; <p>Schnelle binÀre I/O
    196 (s. 15/12/98) wieder abgeschaltet, da
    197 Dateien
    198 nicht wieder einlesbar sind. Druckstörung (p) wird zu Beginn
    199 auf 0
    200 gesetzt, damit sie keine Tendenzen im ersten Zeitschritt hervorruft.</p>
    201 </td> <td>advec_s_bc, check_open, check_parameters,
    202 flow_statistics,
    203 header,
    204 init_3d_model, init_grid, leap_frog, modules, parin, plot_2d, plot_ts,
    205 read_var_list, timestep, write_3d_binary, write_var_list&nbsp; <p><b>Neu:</b>
    20644<br>
    207 advec_s_ups, advec_u_ups, advec_v_ups, advec_w_ups, init_advec,
    208 long_filter,
    209 spline_x, spline_y, spline_z</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">24/02/99</td>
    210 <td>SR</td> <td>1.1a</td> <td>C/N</td>
    211 <td>Kleinere ErgÀnzungen / Änderungen
    212 fÃŒr Upstream
    213 - Spline,&nbsp; <br>
    214 Diverse Verbesserungen bei Berechnung der Diffusionskoeffizienten
    215 (exaktere
    216 Formulierung von Scherungen, Dissipation gemaess Original - Deardorff -
    217 Ansatz, Mischungswegreduktion nur, wenn Schichtung sowohl oberhalb als
    218 auch unterhalb des entsprechenden Gitterpunktes stabil ist),
    219 Wertebegrenzung
    220 bei Spline - Berechnung zur Verhinderung von "Überschwingern"</td>
    221 <td>check_parameters, diffusion_e, diffusion_pt, diffusivities,
    222 header,
    223 init_advec, long_filter, modules, production_e, spline_x, spline_y,
    224 spline_z</td> </tr> <tr nosave="" valign="top">
    225 <td>"</td> <td nosave="">SR</td> <td>1.1a</td>
    226 <td>N/B</td> <td>Erweiterung des des Bott - Chlond -
    227 Schemas auf Advektion der
    228 TKE,
    229 Korrektur der Dichteberechnung (war falsch bei Galilei-Transformation)</td>
    230 <td>advec_s_bc, leap_frog</td> </tr> <tr nosave="" valign="top"> <td nosave="">01/03/99</td>
    231 <td>MS</td> <td>1.1b</td> <td>N</td>
    232 <td>Kleinere ErgÀnzungen fÃŒr Upstream -
    233 Spline:&nbsp; <ul> <li>Gradientenkontrolle
    234 fÃŒr den nicht-parallelen Teil</li> <li>statistische
    235 Auswertung ÃŒber den prozentualen Anteil
    236 des
    237 Upstream-Verfahrens
    238 an der Gesamtadvektion fuer nicht-parallelen Teil</li> </ul>
    239 </td> <td>modules, spline_x, spline_y, spline_z</td>
    240 </tr> <tr nosave="" valign="top"> <td>"</td>
    241 <td>SR</td> <td>1.1b</td> <td>N</td>
    242 <td>Datenkompression fÃŒr 3D-Plotausgaben</td> <td nosave="">check_open, check_parameters, close_files, header,
    243 modules,
    244 parin, plot_3d&nbsp; <p><b>Neu:</b> <br>
    245 write_compressed</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">03/03/99</td>
    246 <td>SR</td> <td>1.1c</td> <td>B/C</td>
    247 <td>Schnelle binÀre I/O auf T3E-Rechnern funktioniert
    248 jetzt.
    249 Beim
    250 binÀren Einlesen dÃŒrfen Records nicht mit dem Trick "<tt>READ
    251 (..) idum</tt>" ÃŒberlesen werden. Zeitmessungen auf T3E
    252 erfolgen
    253 jetzt
    254 grundsÀtzlich mit <tt>TIMEF.</tt></td> <td>check_open,
    255 cpu_zeitmessung, init_3d_model, modules,
    256 write_3d_binary</td> </tr> <tr nosave="" valign="top"> <td nosave="">25/03/99</td>
    257 <td>SR</td> <td>1.1d</td> <td>N</td>
    258 <td>Einbau einer Rayleigh-DÀmpfungsschicht sowie
    259 flexiblere
    260 Wahl der
    261 numerischen Begrenzer fÃŒr das Upstream - Spline - Verfahren.</td>
    262 <td>check_parameters, header, init_3d_model, leap_frog, modules,
    263 parin,
    264 read_var_list, spline_x, spline_y, spline_z, write_var_list</td> </tr>
    265 <tr nosave="" valign="top"> <td nosave="">"</td>
    266 <td>SR</td> <td>1.1d</td> <td>B</td>
    267 <td>Korrektur des Zeitschrittkriteriums bei z=zp im 1D-Modell</td>
    268 <td>init_1d_model</td> </tr> <tr nosave="" valign="top"> <td>25/11/99</td> <td>SR</td>
    269 <td>1.1e</td> <td>N</td> <td nosave="">Partikelplots
    270 mit vtk-Graphiksoftware sind auf t3eh
    271 möglich.
    272 Ausgabe erfolgt im dvr-Format. Bisher noch nicht nutzbar, da noch
    273 Einstellmöglichkeiten
    274 fÃŒr die Partikelquelle(n) fehlen. <b>Wichtig:</b>
    275 Die Benutzung
    276 der
    277 vtk-Software erfordert die zusÀtzliche mrun-Option <tt>-g</tt>.
    278 Das
    279 Hauptprogramm <tt>parles</tt> wird in diesem Fall zum
    280 Unterprogramm
    281 und
    282 von einem c++-Programm aus aufgerufen.</td> <td>header,
    283 init_3d_model, init_pegrid, leap_frog, modules,
    284 parin, parles,
    285 read_var_list, write_var_list&nbsp; <p><b>Neu:</b>
    286 <br>
    287 advec_particles, init_particles, plot_particles</p> </td> </tr>
    288 <tr nosave="" valign="top"> <td>"</td>
    289 <td>SR</td> <td>1.1e</td> <td nosave="">B/C</td>
    290 <td>TIMEF-Zeitmessungen von Subroutine- auf Function-Aufruf
    291 umgestellt.
    292 Laufindexkorrektur in <tt>spline_y</tt>. Fehler trat bei
    293 nx /= ny auf.</td> <td>cpu_zeitmessung, spline_y</td>
    294 </tr> <tr nosave="" valign="top"> <td nosave="">28/12/99</td> <td>SR</td> <td>1.1f</td>
    295 <td>N</td> <td>Plot von IsooberflÀchen mit
    296 vtk-Graphiksoftware sind auf
    297 t3eh
    298 möglich. Ausgabe erfolgt im dvr-Format. Bisher noch nicht
    299 allgemein
    300 nutzbar, da noch diverse manuelle Eingriffe nötig sind.</td>
    301 <td>header, leap_frog, modules, parin, plot_particles,
    302 read_var_list, write_var_list&nbsp; <p><b>Neu:</b>
    303 <br>
    304 plot_isosurface</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">10/01/00</td>
    305 <td>SR</td> <td>1.2</td> <td>C</td>
    306 <td>Randbedingungen fÃŒr w (=0) werden explizit gesetzt,
    307 und
    308 zwar nicht
    309 nur bei&nbsp; <tt>k = nzb, nzt+1</tt> sondern auch
    310 bei&nbsp; <tt>k =
    311 nzt</tt>,
    312 wo bislang der vom vorigen Zeitschritt durch den Drucklöser
    313 ermittelte
    314 Wert stand. Auch jetzt wird der Wert bei k = nzt anschließend
    315 durch
    316 den Drucklöser modifiziert. Soweit bis jetzt abzusehen, hat
    317 diese
    318 Ã„nderung nur minimale Auswirkungen auf den Prognoseverlauf.
    319 Evtl.
    320 gibt es stÀrkere Auswirkungen bei exzessivem Auftreten von
    321 Schwerewellen
    322 am oberen Rand (die dort aber eigentlich sowieso nicht
    323 hingehören).&nbsp; <br>
    324 VariablenÃŒbergabe an <tt>boundary_conds</tt>
    325 erfolgt&nbsp; <br>
    326 ÃŒber Modul und nicht mehr per Parameterliste.&nbsp; <p>Bei
    327 Galilei-Transformation wird jetzt defaultmÀßig
    328 der geostrophische
    329 Wind als Translationsgeschwindigkeit verwendet (neuer
    330 Initialisierungsparameter <tt>use_ug_for_galilei_tr</tt>).
    331 Dadurch wird das verstÀrkte Auftreten von Schwerewellen bei
    332 höheren
    333 geostrophischen Windgeschwindigkeiten unterdrÃŒckt.&nbsp; </p>
    334 <p>3D-Feldvariablen (u, v, w, pt, e, km, kh) sowie einige
    335 2D-Variablen
    336 (usws, vsws, rif, shf) sind nun als Pointer deklariert, denen nach
    337 jedem
    338 Zeitschritt neue Targets zugeordnet werden (fÃŒr die
    339 benötigten&nbsp;
    340 3 Zeitebenen existieren die Targets ..._1 (z.B. u_1), ..._2, ..._3).
    341 Durch
    342 die jeweilige Neuzuordnung der Targets entfÀllt das
    343 Umspeichern
    344 der
    345 Zeitebenen komplett (Zeitersparung: ca. 5% der
    346 Gesamtrechenzeit).&nbsp; <br>
    347 Die Umordnung der Zeitebenen wurde ins neue UP <tt>swap_timelevel</tt>
    348 ausgelagert.&nbsp; <br> <b>Wichtig:</b> Die
    349 Ãœbersetzungszeiten haben durch die
    350 EinfÃŒhrung
    351 der Pointer t.w. sehr deutlich zugenommen (<tt>leap_frog</tt>
    352 benötigt
    353 jetzt z.B. ca. 60 Sekunden). Außerdem benötigt der
    354 Compiler
    355 jetzt wesentlich mehr Speicher. Der "memory"-Parameter in den
    356 Konfigurationsdateien
    357 (.mrun.config, .al.config) muss nun mindestens den Wert 60 (MB) (t3eh,
    358 t3ej2) bzw. 45 (t3eb) und 96 (vpp) haben.&nbsp; <br> <b>Achtung:</b>
    359 bislang wurde diese Änderung nur fÃŒr
    360 das
    361 reine Leapfrog-Verfahren getestet!&nbsp; </p> <p>Neue
    362 Laderoption "<tt>-D preset=nan</tt>" empfohlen (s.
    363 Beispiel-Konfigurationsdatei).
    364 Ebenso empfehlenswert fÃŒr Debug-LÀufe: Compileroption
    365 "<tt>-ei</tt>".
    366 Diese bewirkt einen Programmabbruch, falls mit nicht initialisierten
    367 Variablen
    368 gearbeitet wird (ist aber zeitaufwendig in der AusfÃŒhrung!).</p>
    369 </td> <td>boundary_conds, check_parameters, header,
    370 init_3d_model,
    371 leap_frog,
    372 modules, parin, read_var_list, timestep, write_var_list&nbsp; <p><b>Neu:</b>
    373 <br>
    374 swap_timelevel</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">10/01/00</td>
    375 <td>SR</td> <td>1.2</td> <td>B</td>
    376 <td>Der Asselin-Filter wird vor Umordnung der Zeitebenen
    377 aufgerufen. Dies
    378 geschah bisher fÀlschlicherweise erst danach, sodass der
    379 Zeitfilter
    380 asymmetrisch arbeitete.&nbsp; <br> <b>Achtung:</b>
    381 diese Änderung hat Auswirkungen auf den
    382 Prognoseverlauf.
    383 Die Testergebnis-Datei wurde entsprechend geÀndert.</td>
    384 <td>leap_frog</td> </tr> <tr nosave="">
    385 <td nosave="" valign="top">14/02/00</td> <td nosave="" valign="top">MS</td> <td nosave="" valign="top">1.2</td> <td nosave="" valign="top">B/C</td> <td><b>1D-Modell:</b>
    386 <br>
    387 Der Asselin-Filter im 1D-Modell wird nun auch vor der Umordnung der
    388 Zeitebenen aufgerufen (s.o.).&nbsp; <p><b>3D-Modell:</b>
    389 <br>
    390 TKE wurde bisher bei <tt>scalar_advec=bc-scheme</tt> einer
    391 zeitlichen
    392 Filterung unterzogen. Dies wird nun unterbunden.&nbsp; </p> <p>Die
    393 Divergenz der ImpulsflÃŒsse an der Prandtl - Schicht -
    394 Obergrenze
    395 wird nun ÃŒber eine ganze Gitterweite gebildet. Die bisherige
    396 Methode
    397 lieferte im Vergleich mit Ergebnissen anderer LES-Modelle&nbsp; zu
    398 große
    399 ImpulsflÃŒsse.&nbsp; </p> <p>Bei der
    400 Berechnung der Diffusion der Temperatur werden die
    401 Diffusionskoeffizienten
    402 nun wieder durch Mittelung fÃŒr die entsprechenden&nbsp;
    403 Gitterpunkte
    404 bereitgestllt. Das Maximumkriterium, das im Zuge der Implementierung
    405 des
    406 Upstream-Spline Advektionsverfahrens eingebaut wurde, bewirkte ein zu
    407 rasches
    408 Anwachsen der Grenzschicht mit der Zeit.&nbsp; </p> <p><b>Achtung:</b>
    409 diese Änderungen haben Auswirkungen auf
    410 den Prognoseverlauf.
    411 Die Testergebnis-Datei wurde entsprechend geÀndert.</p> </td>
    412 <td nosave="" valign="top">init_1d_model,
    413 asselin_filter,
    414 diffusion_u, diffusion_v,&nbsp; <br>
    415 diffusion_pt</td> </tr> <tr nosave="" valign="top"> <td nosave="">17/02/00</td>
    416 <td>MS</td> <td>2.0</td> <td>N</td>
    417 <td><b>Allgemeine Beschreibung der Änderungen:</b>
    418 <br>
    419 vollstÀndige Implementierung des wolkenphysikalischen
    420 Moduls&nbsp; <p>Zur Implementierung der Wolkenphysik waren
    421 umfangreiche
    422 Ã„nderungen
    423 in zahlreichen Programmteilen notwendig (Beschreibung <a href="#Cloud_physics">siehe
    424 unten</a> ). Im einzelnen wurden folgende Unprogramme
    425 geÀndert:&nbsp; <br> <b>modules</b>:&nbsp;
    426 <br>1) Bereitstellung neuer 3D-, 2D- und 1D-Felder fÃŒr
    427 die Prognose
    428 des Gesamtwassergehaltes&nbsp; <br>
    429 2) "cloud_parameters" als neues Modul mit wolkenphysikalischen
    430 Variablen&nbsp; <br> <b>parin: </b>Initialisierungsparameterliste
    431 wurde erweitert
    432 (s.u.)&nbsp; <br> <font color="#000000"><b>read_var_list,
    433 write_var_list,
    434 write_3d_binary: </b>In/Output
    435 der neuen Initialisierungsparamter und Felder fÃŒr
    436 FortsetzungslÀufe&nbsp;</font> <br> <font color="#000000"><b>check_parameters:</b>
    437 Initialisierung
    438 des
    439 Feuchteprofils und Ausgabe von neuen Vertikalprofilen:&nbsp;</font>
    440 <br> <font color="#ff0000">vpt</font><font color="#000000">: virtuelle
    441 poteniellen
    442 Temperatur,</font> <br> <font color="#ff0000">lpt</font><font color="#000000">:
    443 potentielle
    444 FlÃŒssigwassertemperatur,</font> <br> <font color="#ff0000">q</font><font color="#000000">:
    445 Gesamtwassergehalt,</font> <br> <font color="#ff0000">qv</font><font color="#000000">:
    446 spezifische
    447 Feuchte,</font> <br> <font color="#ff0000">ql</font><font color="#000000">:
    448 FlÃŒssigwassergehalt,</font> <br> <font color="#ff0000">w"vpt", w*vpt*, wvpt</font><font color="#000000">:
    449 Auftriebsfluss (subskalig, aufgelöst, gesamt),</font> <br>
    450 <font color="#ff0000">w"q", w*q*, wq</font><font color="#000000">:
    451 Wasserfluss (subs., aufg., ges.),</font> <br> <font color="#ff0000">w"qv", w*qv*, wqv</font><font color="#000000">:
    452 Feuchtefluss (subs, aufg., ges.)</font> <br> <b>init_3d_model</b>:
    453 Initialisierung aller
    454 Feuchte/Wasserfelder&nbsp; <br> <b>init_1d_model</b>:
    455 Anpassung an Rechnungen mit Feuchte&nbsp; <br> <b>header</b>:
    456 Headerausgaben fÃŒr Feuchtebehandlung und
    457 Wolkenphysik
    458 eingefÃŒgt, außerdem Formatnummern erweitert um Platz
    459 fÃŒr
    460 weitere Ausgaben zu schaffen&nbsp; <br> <b>leap_frog:</b>
    461 <br>
    462 1) alle prognostischen Gleichungen wurden in prognostic_equations
    463 ausgelagert&nbsp; <br>
    464 2) Aufrufe der neuen Unterprogramme (UP) compute_vpt,
    465 calc_liquid_water_content&nbsp; <br>
    466 3) veraenderter Aufruf von diffusivities&nbsp; <br> <b><tt>b</tt>oundary_conds,
    467 asselin_filter, swap_timelevel,
    468 flow_statistics: </b>Anpassung
    469 an Feuchtebehandlung&nbsp; <br> <b>plot2d, plot3d</b>:
    470 Ausgabemöglichkeiten von q und ql <br> <b>buoyancy</b>:
    471 Anpassung des Autriebstermes an
    472 Feuchtebehandlung
    473 durch neue Übergabeparameter: Temperatur + Nummer des
    474 entsprechenden
    475 mittleren Temperaturprofils&nbsp; <br> <b>diffusion_e</b>:
    476 Anpassung der Mischungswegberechnung an
    477 Feuchtebehandlung
    478 durch Variation der Übergabeparameter&nbsp; <br> <b>production_e</b>:
    479 TKE-Produktion durch AuftriebskrÀfte an
    480 Feuchtebehandlung
    481 angepasst&nbsp; <br> <b>diffusivities</b>:
    482 siehe diffusion_e&nbsp; <br> <b>prandtl-fluxes</b>:
    483 Prandtl-Schicht fuer den
    484 Gesamtwassergehalt
    485 eingefÃŒgt&nbsp; </p> <p>ZusÀtzlich
    486 wurden folgende Unterprogramme NEU
    487 eingefÃŒhrt:&nbsp; <br> <b>inti_cloud_physics</b>:
    488 Initialisierung wolkenphysikalischer
    489 Parameter&nbsp; <br> <b>prognostic_equations</b>:
    490 Auslagerung der prognostischen
    491 Gleichungen
    492 aus leap_frog, zusÀtzliche porgnostische Gleichung
    493 fÃŒr den
    494 Gesamtwassergehalt&nbsp; <br> <b>diffusion_s</b>:
    495 Berechnung der Diffusion skalarer
    496 Größen
    497 (Temperatur und Gesamtwassergehalt), ersetzt diffusion_pt&nbsp; <br>
    498 <b>calc_liquid_water_content</b>: Berechnung des
    499 FlÃŒssigwassergehalts&nbsp; <br> <b>calc_radiation</b>:
    500 Parametrisierung langwelliger
    501 Strahlungsprozesse
    502 ÃŒber des Schema der effektiven EmissivitÀt&nbsp; <br>
    503 <b>calc_precipitation</b>:Parametrisierung von
    504 Niederschlagsprozessen
    505 mit Hilfe eines vereinfachten Kesslerschemas&nbsp; <br> <b>impact_of_latent_heat</b>:
    506 BerÃŒcksichtigung der durch
    507 Niederschlagsprozesse
    508 zurÃŒckbleibenden latenten Waerme innerhalb eines
    509 Gittervolumens&nbsp; <br> <b>compute_vpt</b>:
    510 Berechnung der virtuellen potentiellen
    511 Temperatur&nbsp; </p> <p><b>Liste der neuen
    512 Initialisierungsparameter:</b> <br> <table nosave="" border="1"> <caption>&nbsp; <br> </caption><tbody>
    513 </tbody><tbody> </tbody> <tbody> <tr nosave=""> <td nosave=""><b>Parameter</b></td>
    514 <td nosave=""><b>Typ</b></td> <td nosave="" width="4%"><b>Default</b></td>
    515 <td nosave=""><b>Beschreibung</b></td> </tr>
    516 <tr nosave=""> <td nosave=""><tt>moisture</tt></td>
    517 <td>L</td> <td>FALSE</td> <td>Ab-/Zuschalten
    518 des Gesamtwassergerhaltes als neue
    519 progn. Variable</td> </tr> <tr> <td><tt>cloud_physics</tt></td>
    520 <td>L</td> <td>FALSE</td> <td>Ab-/Zuschalten
    521 des Kondensationsschemas</td> </tr> <tr nosave="">
    522 <td><tt>radiation</tt></td> <td>L</td>
    523 <td nosave="">FALSE</td> <td>Ab-/Zuschalten
    524 des Strahlungsschemas</td> </tr> <tr> <td><tt>precipitation</tt></td>
    525 <td>L</td> <td>FALSE</td> <td>Ab-/Zuschalten
    526 der Niderschlagsparametrisierung</td> </tr> <tr> <td><tt>bc_q_b</tt></td>
    527 <td>C</td> <td>'dirichlet'</td> <td>untere
    528 Randbedingung fÃŒr q (siehe auch bc_pt_b)</td> </tr>
    529 <tr> <td><tt>bc_q_t</tt></td> <td>C</td>
    530 <td>'neumann'</td> <td>obere RB fÃŒr q
    531 (siehe auch bc_pt_t)</td> </tr> <tr> <td><tt>q_surface</tt></td>
    532 <td>R</td> <td>0.0</td> <td>Feuchtewert
    533 an der ErdoberflÀche</td> </tr> <tr> <td><tt>q_surface_initial_change</tt></td>
    534 <td>R</td> <td>0.0</td> <td>vgl.
    535 pt_surface_initial_change</td> </tr> <tr> <td><tt>q_vertical_gradient</tt></td>
    536 <td>R(10)</td> <td>0.0</td> <td>vgl.
    537 pt_vertical_gradient</td> </tr> <tr nosave="">
    538 <td nosave=""><tt>q_vertical_gradient_level</tt></td>
    539 <td>R(10)</td> <td>10000.0</td> <td>vgl.
    540 pt_vertical_gradient_level</td> </tr> <tr> <td><tt>surface_pressure</tt></td>
    541 <td>R</td> <td>1013.25</td> <td>Luftdruck
    542 an der ErdoberflÀche</td> </tr> <tr> <td><tt>surface_waterflux</tt></td>
    543 <td>R</td> <td>0.0</td> <td>oberflÀchennaher
    544 Wasser/Feuchtefluss</td> </tr> </tbody> </table>
    545 FortsetzungslÀufe mit Daten, die mit Modellversionen kleiner
    546 2.0
    547 erzeugt
    548 wurden, sind aufgrund der erweiterten Initialisierungsparameterliste
    549 INKOMPATIBEL
    550 zu den Einleseroutinen der Version 2.0. Ein Update auf Version 2.0
    551 sollte
    552 deshalb nach Abschluss eines kompletten Modelllaufs erfolgen.&nbsp;
    553 </p> <p><b>Achtung:</b> diese
    554 Ã„nderungen haben Auswirkungen auf
    555 den Prognoseverlauf.
    556 Die Testergebnis-Datei wurde entsprechend geÀndert.</p> </td>
    557 <td nosave="" valign="top">modules, parin,
    558 read_var_list,
    559 check_parameters,
    560 init_3d_model, init_1d_model, header, leap_frog. buoyancy, diffusion_e,
    561 production_e, diffusivities, prandtl_fluxes, boundary_conds,
    562 asselin_filter,
    563 swap_timelevels, flow_statistics, plot_2d, plot_3d, write_var_list,
    564 write_3d_binary&nbsp; <p><b>Neu:</b> <br>
    565 init_cloud_physics, prognostic_equations, diffusion_s,
    566 calc_liquid_water_content,
    567 calc_radiation, calc_precipitation, impact_of_latent_heat, comute_vpt</p>
    568 </td> </tr> <tr nosave=""> <td nosave="" valign="top">18/02/00</td> <td nosave="" valign="top">MS</td> <td nosave="" valign="top">2.0</td> <td nosave="" valign="top">B/N</td> <td>Im Zuge der
    569 Umstellung auf Modellversion 2.0&nbsp; wurden
    570 noch kleine
    571 Ã„nderungen an den Unterprogrammen diffusion_e, production_e
    572 und
    573 diffusivities
    574 vorgenommen. In allen genannten&nbsp; <br>
    575 Unterprogrammen wurde bisher ein strengeres Kriterium zur Bestimmung
    576 der SchichtungsverhÀltnisse verwendet. Ein Modellvergleich
    577 zeigte
    578 jedoch, dass dadurch die Diffusion im Bereich der Inversion zu gross
    579 wird.&nbsp; <p>Eine weitere ErgÀnzung betrifft die
    580 Advektionsverfahren:&nbsp; <br>
    581 Das Bott-Chlond Advektionsverfahren ist nun auch fÃŒr
    582 Rechnungen
    583 mit Feuchte/Wolkenphysik verfÃŒgbar.&nbsp; </p> <p><b>Achtung:</b>
    584 diese Änderungen haben Auswirkungen auf
    585 den Prognoseverlauf.
    586 Die Testergebnis-Datei wurde entsprechend geÀndert.</p> </td>
    587 <td nosave="" valign="top">diffusion_e,
    588 production_e,
    589 diffusivities, check_parameters</td> </tr> <tr nosave="" valign="top"> <td nosave="">26/04/00</td>
    590 <td>SR</td> <td>2.0a</td> <td>C</td>
    591 <td>VollstÀndige Umstellung von vtk-Grafik-Software auf
    592 dvrp-Software.
    593 Grafik-Ausgaben im dvr-Format sind mittlerweile begrenzt nutzbar
    594 (IsooberflÀchen
    595 sind darstellbar, siehe neue Laufparameter&nbsp; <tt>dt_dvrp,
    596 threshold</tt>),
    597 es wird aber in der Anwendung in naher Zukunft noch diverse
    598 Ã„nderungen
    599 geben. Partikelausgabe vorerst nicht mehr möglich (Verlagerung
    600 schon).</td> <td>header, init_particles, init_3d_model,
    601 leap_frog, modules,
    602 parin, parles,
    603 read_var_list, write_var_list&nbsp; <br> <b>Gestrichen:</b>
    604 <br>
    605 plot_isosurface, plot_particles&nbsp; <p><b>Neu:</b>
    606 <br>
    607 init_dvrp, plot_dvrp</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">26/04/00</td>
    608 <td>SR</td> <td>2.0a</td> <td>C</td>
    609 <td>Durch zusÀtzlichen zyklischen Rand im
    610 Bott-Chlond-Schema
    611 sehr
    612 viele SENDRECV-Aufrufe eingespart.&nbsp; <br>
    613 Ã„nderung des Namens einer eingelesenen Environment-Variablen
    614 in <tt>check_open</tt>
    615 von <tt>remote_addres</tt> nach <tt>return_addres</tt>.&nbsp;
    616 <br>Prozessor-Topologie kann durch Benutzer vorgegeben werden.
    617 Dazu neue
    618 Initialisierungsparameter <tt>npex</tt> und <tt>npey</tt>.
    619 Durch
    620 Ã„nderungen
    621 am Header-Format wurde Testergebnis-Datei geÀndert.</td>
    622 <td>advec_s_bc, check_open, header, init_pegrid, modules, parin,
    623 read_var_list,
    624 write_var_list</td> </tr> <tr nosave="" valign="top"> <td nosave="">26/04/00</td>
    625 <td>SR</td> <td>2.0a</td> <td>N</td>
    626 <td>Rechnungen mit geneigter OberflÀche erlauben jetzt
    627 die
    628 Vorgabe
    629 eines stabil geschichteten Temperaturprofils mit konstantem Gradienten.
    630 Hinzuschalten von Feuchte funktioniert fÃŒr Hangrechnungen noch
    631 nicht.</td> <td>advec_s_bc, buoyancy, init_3d_model,
    632 modules,
    633 prognostic_equations&nbsp; <p><b>Neu:</b> <br>
    634 init_slope</p> </td> </tr> <tr nosave="" valign="top"> <td>13/06/00</td> <td>MS</td>
    635 <td>2.0a</td> <td nosave="">B</td> <td>Es
    636 werden nun auch die seitlichen RÀnder fÃŒr ql
    637 gesetzt.
    638 Ein Nichtsetzen der Randbedingungen fÃŒhrte zu Fehlern bei der
    639 Ausgabe
    640 von pt</td> <td nosave="">calc_liquid_water_content</td>
    641 </tr> <tr nosave="" valign="top"> <td nosave="">03/07/00</td> <td>SR</td> <td>2.0b</td>
    642 <td>C</td> <td>FÃŒr eine Reihe von&nbsp;
    643 Unterprogrammen, die innerhalb
    644 von <tt>prognostic_equation</tt>
    645 aufgerufen werden und an die Pointer-Variablen ÃŒbergeben
    646 werden,
    647 sind
    648 jetzt explizite Interfaces vereinbart (neues Modul <tt>pointer_interfaces</tt>).
    649 Auch im Vereinbarungsteil der entsprechenden Unterprogramme sind diese
    650 Ãœbergabeparameter jetzt aus KonsistenzgrÃŒnden (und
    651 weil es
    652 sonst
    653 Laufzeitfehler gibt) als Pointer-Variablen deklariert. Mit dieser
    654 Ã„nderung
    655 ist der große Speicher- und CPU-Zeit-Bedarf beim
    656 Ãœbersetzen
    657 von prognostic_equations wieder auf ein ertrÀgliches
    658 Maß
    659 reduziert.&nbsp; <br>
    660 Im Rahmen dieser Änderungen wurde auch an diffusion_e ein
    661 Hilfsfeld
    662 weniger ÃŒbergeben.&nbsp; <br>
    663 Aus nicht vollstÀndig gekÀrten GrÃŒnden haben
    664 sich die
    665 Zahlen in der Testergebnis-Datei minimal geÀndert (und zwar
    666 die
    667 Spalte
    668 mit der Gesamtdivergenz nach Aufruf des Drucklösers).</td>
    669 <td>advec_s_bc, buoyancy, diffusion_e, diffusion_s, diffusion_u,
    670 diffusion_v,
    671 diffusion_w, disturb_field, modules, production_e, prognostic_equations</td>
    672 </tr> <tr nosave="" valign="top"> <td nosave="">04/07/00</td> <td>SR</td> <td>2.0b</td>
    673 <td>B</td> <td>Diriclet-Randbedingungen fÃŒr
    674 Temperatur und
    675 FlÃŒssigwassergehalt
    676 werden gesetzt. Dies wÀre bereits nach EinfÃŒhrung der
    677 Pointer
    678 zwingend notwendig gewesen. Rechnungen mit vorgegebener
    679 OberflÀchentemperatur
    680 schlugen deshalb bislang fehl.</td> <td>boundary_conds</td>
    681 </tr> <tr nosave="" valign="top"> <td nosave="">07/09/00</td> <td>MS</td> <td>2.0b</td>
    682 <td>B</td> <td>Die virtuelle potenielle Temperatur
    683 wird nun auch fÃŒr
    684 k=nzb und
    685 k=nzt+1 berechnet, um die Randwerte auch fÃŒr Ausgabezwecke
    686 bereichtzustellen.&nbsp;</td> <td>compute_vpt</td>
    687 </tr> <tr nosave="" valign="top"> <td nosave="">28/12/00</td> <td>SR</td> <td>2.1</td>
    688 <td>C/N</td> <td>PALM erlaubt jetzt den Einsatz
    689 optionaler Software-Pakete,
    690 die zwar
    691 zum Modell gehören, standardmÀßig aber
    692 nicht mit
    693 ÃŒbersetzt
    694 werden, um so unter anderem Kompilationszeit einzusparen. Siehe neues
    695 Kapitel
    696 3.7 in der Modelldokumentation.&nbsp; <p>Einsatz der
    697 dvrp-Software wurde vollstÀndig
    698 ÃŒberarbeitet.
    699 Sie ist nun als Software-Paket optional im Modell einsetzbar. Siehe
    700 ÃŒberarbeitetes
    701 Kapitel 4.5.6 in der Modelldokumentation.&nbsp; </p> <p>Die
    702 Prognose der Partikelverlagerung ist ebenfalls in ein
    703 optionales
    704 Software-Paket ausgelagert.</p> </td> <td>advec_particles,
    705 header, init_3d_model, init_dvrp,
    706 init_particles,
    707 init_pegrid, modules, parin, parles, plot_dvrp, prognostic_equations,
    708 read_var_list,
    709 write_var_list&nbsp; <p><b>Neu:</b> <br>
    710 package_parin</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">28/12/00</td>
    711 <td>SR</td> <td>2.1</td> <td>B</td>
    712 <td>MPI_FINALIZE ans Ende des Hauptprogramms geschoben (stand
    713 vorher vor
    714 cpu_auswertung, wo noch ein Barrier-Aufruf steht). comm2d war zu Beginn
    715 undefiniert und wird nun erst einmal gleich MPI_COMM_WORLD gesetzt.</td>
    716 <td>parles</td> </tr> <tr nosave="" valign="top"> <td nosave="">02/01/01</td>
    717 <td>SR</td> <td>2.1a</td> <td>C</td>
    718 <td>Offene Dateien werden sobald möglich geschlossen.
    719 Wiedereröffnung
    720 bestimmter Dateien mit POSITION='APPEND' möglich. In diesem
    721 Zusammenhang
    722 wurde das Unterprogramm close_files in close_file umbenannt und hat nun
    723 1 Argument.&nbsp; <br>
    724 Anpassung der Diffusionsparametrisierung im 1D-Modell an das 3D-Modell.</td>
    725 <td>advec_particles, check_cpu_time, check_open, cpu_auswertung,
    726 init_1d_model,
    727 init_3d_model, init_particles, modules.f90, parin, parles, plot_2d,
    728 write_3d_binary&nbsp; <p><b>Neu:</b> <br>
    729 close_file&nbsp; </p> <p><b>Eliminiert:</b>
    730 <br>
    731 close_files</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">02/01/01</td>
    732 <td>SR</td> <td>2.1a</td> <td>B</td>
    733 <td>Beseitigung kleiner Fehler.</td> <td>check_cpu_time,
    734 diffusion_e, diffusivities, long_filter,
    735 production_e</td> </tr> <tr nosave="" valign="top"> <td>05/01/01</td> <td>SR</td>
    736 <td>2.1b</td> <td>N</td> <td nosave="">Neues
    737 Software-Paket zur Berechnung von Spektren im
    738 Ortsraum</td> <td>check_open, header, init_3d_model,
    739 leap_frog, modules,
    740 package_parin,
    741 parles, read_var_list, write_3d_binary, write_var_list&nbsp; <p><b>Neu:</b>
    742 <br>
    743 calc_spectra, plot_spectra</p> </td> </tr> <tr valign="top"> <td>25/01/01</td> <td>SR</td>
    744 <td>2.1c</td> <td>C/N</td> <td>Drucklöser
    745 kann jetzt die Singleton-FFT benutzen. Modul <tt>singleton</tt>
    746 wurde deshalb von <tt>calc_spectra.f90</tt> nach <tt>modules.f90</tt>
    747 geschoben
    748 (neuer Initialisierungsparameter <tt>fft_method</tt>).&nbsp;
    749 <br>FlÃŒsse können jetzt bei k=1
    750 unabhÀngig von der
    751 Verwendung
    752 einer Prandtl-Schicht vorgegeben werden (neuer
    753 Initialisierungsparameter <tt>use_surface_fluxes</tt>).&nbsp;
    754 <br>Modul <tt>test_variables</tt> wurde aus allen
    755 Programmteilen entfernt.
    756 Hauptprogramm wurde von parles nach <tt>palm</tt>
    757 umbenannt.&nbsp; <br>
    758 Modell kann auf DEC-Workstations eingesetzt werden (-D <tt>dec</tt>).&nbsp;
    759 <br>ZusÀtzliche Zeitmessungen mit dvrp-Software.
    760 Schreiben von
    761 Partikel-Informationen
    762 ist optional (neuer Parameter <tt>write_particle_informations</tt>).</td>
    763 <td>advec_particles, calc_spectra, check_parameters,
    764 cpu_zeitmessung, diffusion_s,
    765 header, init_3d_model, init_dvrp, init_particles, leap_frog, modules,
    766 package_parin,
    767 parin, poisfft, read_var_list, swap_timelevel, write_var_list&nbsp;
    768 <p><b>Neu:</b> <br>
    769 palm&nbsp; </p> <p><b>Eliminiert:</b> <br>
    770 parles, module_test</p> </td> </tr> <tr valign="top"> <td>25/01/01</td> <td>SR</td>
    771 <td>2.1c</td> <td>B</td> <td>Fehler
    772 beim öffnen von Unit 23 beseitigt. Modul <tt>interface</tt>
    773 fehlte in disturb_field.&nbsp; <br>
    774 Wertebereich von theta* in Prandtl-Fluxes eingeschrÀnkt, weil
    775 sonst auf einigen Rechnern overflow droht, wenn u*=0.</td> <td>check_open,
    776 disturb_field, prandtl_fluxes</td> </tr> <tr valign="top"> <td>30/01/01</td> <td>SR</td>
    777 <td>2.1d</td> <td>N/C</td> <td>Prognose
    778 eines passiven Skalars ist möglich (anstatt
    779 Feuchte),
    780 dazu neuer Initialisierungsparameter <tt>passive_scalar</tt>.&nbsp;
    781 <p>Falls kein Pfad fÃŒr ftpcopy existiert, werden in <tt>check_open</tt>
    782 die Dateinamen fÃŒr AVS-Koordinaten- und Datendatei auf
    783 "unknown"
    784 gesetzt.</p> </td> <td>asselin_filter,
    785 boundary_conds, check_open, check_parameters,
    786 flow_statistics,
    787 header, init_1d_model, init_3d_model, modules, parin, plot_2d,
    788 plot_dvrp,
    789 prandtl_fluxes, prognostic_equations, read_var_list, swap_timelevel,
    790 write_3d_binary,
    791 write_var_list</td> </tr> <tr valign="top"> <td>30/01/01</td>
    792 <td>SR</td> <td>2.1d</td> <td>B</td>
    793 <td>String-Ausgabe fÃŒr use_surface_fluxes korrigiert.
    794 Version vom
    795 25/01/01 brach deswegen bei FortsetzungslÀufen ab.&nbsp; <br>
    796 xy-Plotausgabe von q und ql korrigiert.</td> <td>plot_2d,
    797 write_var_list</td> </tr> <tr nosave="" valign="top"> <td nosave="">30/03/01</td>
    798 <td>SR</td> <td>2.2</td> <td>N/C</td>
    799 <td>SÀmtliche 3D-Felder der Zeitebene t+dt wurden
    800 entfernt.
    801 Ebenso
    802 die Arbeitsfelder work und work1. Hilfsfelder wurden soweit
    803 möglich
    804 eingespart und werden grundsÀtzlich lokal allokiert. Dadurch
    805 konnten
    806 eine Reihe von Übergabeparametern gestrichen werden (z.B. beim
    807 Aufruf
    808 von <tt>pres, advec_s_bc, poisfft, production_e, sor </tt>sowie
    809 den
    810 Spline-Unterprogrammen).
    811 Der Long-Filter wurde in das Upstream-Spline-Verfahren integriert. Da
    812 der
    813 Zeitfilter jetzt direkt in der prognostischen Gleichung angewendet wird
    814 (bisher geschah dies erst nach Aufruf des Drucklösers), haben
    815 sich
    816 die Zahlen in der Testergebnis-Datei geÀndert. Die mittleren
    817 Profile
    818 sind aber unbeeinflusst.&nbsp; <p>Eine weitere kleinere
    819 Ã„nderung der Testergebnis-Daten
    820 wird dadurch
    821 verursacht, dass jetzt der Parameter <tt>adjust_mixing_length</tt>
    822 defaultmÀßig <tt>.FALSE.</tt>
    823 ist und der Mischungsweg grundsÀtzlich zusÀtzlich
    824 auf&nbsp; <tt>0.7
    825 * zu</tt>&nbsp;&nbsp; begrenzt wird. Falls <tt>adjust_mixing_length=T</tt>,
    826 wird jetzt der Mischungsweg in <tt>diffusivities</tt>
    827 analog zu <tt>diffusion_e</tt>
    828 an allen Gitterpunkten modifiziert. <b>Achtung: </b>Diese
    829 Ã„nderungen
    830 können bei anderen Simulationen t.w. erhebliche Auswirkungen
    831 auf
    832 die
    833 oberflÀchennahen Ergebnisse haben.&nbsp; </p> <p><b>Kleinere
    834 Ã„nderungen:</b> In <tt>init_cloud_physics</tt>
    835 wird
    836 der Wert der Variablen <tt>surface_pressure</tt> in hPa
    837 belassen
    838 (bisher
    839 Umwandlung in Pa).&nbsp; <br>
    840 Die Namelist-Namen der Software-Pakete sind&nbsp; t.w.
    841 geÀndert.&nbsp; <br>
    842 Unit 14 (binÀre Ausgabe fÃŒr
    843 FortsetzungslÀufe) wird
    844 jetzt im Hauptprogramm geschlossen, damit auf diese Datei noch
    845 benutzergesteuerte
    846 Ausgaben erfolgen können.&nbsp; <br>
    847 Laufparameter werden in keinem Fall mehr auf Unit 14 ausgegeben bzw.
    848 von Unit 13 gelesen, d.h. sie gelten jetzt tatsÀchlich nur
    849 fÃŒr
    850 den jeweils aktuellen Lauf.&nbsp; <br>
    851 Partikeladvektion funktioniert jetzt auch zusammen mit der
    852 Galilei-Transformation.&nbsp; </p> <p>Restliche
    853 deutsche Variablen-, Unterprogramm- und Modulnamen
    854 wurden
    855 ins Englische ÃŒbersetzt. Davon sind fast alle Programmteile
    856 betroffen
    857 (nicht in rechter Spalte aufgefÃŒhrt).</p> </td> <td>advec_particles,
    858 advec_s_bc, advec_s_ups, advec_u_ups,
    859 advec_v_ups,
    860 advec_w_ups, boundary_conds, calc_spectra, check_parameters,
    861 diffusion_e,
    862 init_3d_model, init_cloud_physics, init_pegrid, init_rankine,
    863 leap_frog,
    864 modules, package_parin, palm, parin, poisfft, pres, production_e,
    865 prognostic_equations,
    866 read_var_list, sor, swap_timelevel, transpose_*, write_3d_binary,
    867 write_var_list&nbsp; <p><b>Neu:</b> <br>
    868 cpu_log, cpu_statistics&nbsp; </p> <p><b>Eliminiert:</b>
    869 <br>
    870 asselin_filter, cpu_auswertung, cpu_zeitmessung, long_filter</p> </td>
    871 </tr> <tr nosave="" valign="top"> <td nosave="">12/07/01</td> <td>SR</td> <td>2.2a</td>
    872 <td>N/C</td> <td>Defaultwert der unteren
    873 Randbedingung fÃŒr die TKE ist ab
    874 sofort <tt>bc_e_b
    875 = 'neumann'</tt>.&nbsp; <br>
    876 Partikelquelle ist ÃŒber Paketparameter steuerbar.
    877 Partikeleigenschaften
    878 sind mittels benutzereigener Software steuerbar. Der dvrp-Ausgabeweg
    879 ist
    880 jetzt ebenfalls ÃŒber Paketparameter steuerbar.&nbsp; <br>
    881 Allen Modulen (bis auf singleton) wurde eine SAVE-Anweisung
    882 hinzugefÃŒgt,
    883 damit die durch sie vereinbarten Variablen wÀhrend der
    884 Rechnung in
    885 keinem Fall undefiniert werden können (diese Gefahr besteht
    886 z.B.
    887 auf
    888 SGI-Origin-Maschinen).</td> <td>advec_particles, header,
    889 init_dvrp, init_particles,
    890 modules.f90, package_parin,
    891 plot_dvrp, user_interface</td> </tr> <tr> <td>12/07/01</td>
    892 <td>SR</td> <td>2.2a</td> <td>B</td>
    893 <td>Verschiebung der OPEN-Anweisung fÃŒr Unit 33
    894 (AVS-FLD-Datei).</td> <td>check_open</td> </tr>
    895 <tr nosave="" valign="top"> <td nosave="">20/07/01</td>
    896 <td>SR</td> <td>2.3</td> <td>N</td>
    897 <td>Einbau des Mehrgitterverfahrens zur Lösung der
    898 Poisson-Gleichung.</td> <td>check_parameters,
    899 exchange_horiz, header, init_grid,
    900 init_pegrid, modules,
    901 parin, pres, run_control&nbsp; <p><b>Neu:</b> <br>
    902 poismg</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">21/08/01</td>
    903 <td>SR</td> <td>2.3a</td> <td>N/C</td>
    904 <td>ErgÀnzung der dvrp-Software: Partikel
    905 können mit
    906 SchwÀnzen
    907 versehen werden. Die Ausgabe der dvrp-Plotdaten durch einen separaten
    908 PE
    909 ist möglich (mrun-Option "<tt>-p dvrp_graphics+1PE</tt>").
    910 Der
    911 Kommunikator <tt>MPI_COMM_WORLD</tt>&nbsp;
    912 wurde deshalb durch&nbsp; <tt>comm_palm</tt>&nbsp;
    913 ersetzt.&nbsp; <p>Reduzierung des Mischungsweges im
    914 Wandbereich kann wahlweise
    915 abgeschaltet
    916 werden. FÃŒr km und kh wird jetzt eine Neumann-Randbedingung am
    917 unteren
    918 Rand verwendet. Die TKE-Energieproduktionsberechnung durch Scherung des
    919 Grundstroms am unteren Rand wurde verbessert.&nbsp; </p> <p>Generelle
    920 Verwendung der bodennahen vertikalen
    921 ImpulsflÃŒsse in
    922 den Diffusionstermen von u und v, immer wenn diese als Randbedingung
    923 vorgegeben
    924 sind (gemÀß <tt>use_surface_fluxes</tt>,
    925 - bisher wurde
    926 dies
    927 nur bei eingeschalteter Prandtl-Schicht gemacht). Schubspannungen
    928 können
    929 jetzt als Randbedingungen vorgegeben werden (allerdings unter
    930 zuhilfenahme
    931 benutzereigener Software).&nbsp; </p> <p>ZusÀtzliche
    932 Schnittstellen fÃŒr benutzereigene
    933 Software in
    934 allen Tendenztermen, in <tt>flow_statistics,</tt> und
    935 fÃŒr
    936 Partikel-
    937 bzw. dvrp-Programmteile (Bestimmung von Partikeleigenschaften,
    938 Festlegung
    939 von Farbtabellen).&nbsp; </p> <p><b>Achtung: </b>Diese
    940 Ã„nderungen können bei
    941 Simulationen mit
    942 mittlerem Wind durch die Änderungen im bereich des unteren
    943 Randes
    944 t.w. erhebliche Auswirkungen auf die oberflÀchennahen
    945 Ergebnisse
    946 haben.</p> </td> <td>advec_particles, diffusion_e,
    947 diffusion_u, diffusion_v,
    948 diffusivities,
    949 flow_statistics, header, init_dvrp, init_particles, init_pegrid,
    950 leap_frog,
    951 modules, package_parin, palm, parin, plot_dvrp, production_e,
    952 prognostic_equations,
    953 read_var_list, swap_timelevel, user_interface, write_var_list</td>
    954 </tr> <tr nosave="" valign="top"> <td nosave="">21/08/01</td> <td>SR</td> <td>2.3a</td>
    955 <td>B</td> <td>Falsche Positionierung von
    956 MPI_ALLREDUCE in check_cpu_time
    957 korrigiert.</td> <td>check_cpu_time</td> </tr>
    958 <tr nosave="" valign="top"> <td nosave="">04/09/01</td>
    959 <td>SR</td> <td>2.3b</td> <td>N</td>
    960 <td>ZusÀtzliche Profilausgaben fÃŒr
    961 Energieproduktionsterme möglich.
    962 Stördruck wird bei der FFT-Methode nicht mehr durch
    963 Aufsummieren
    964 der
    965 Werte zu den einzelnen Zeitschritten ermittelt.</td> <td>check_parameters,
    966 flow_statistics, modules, pres</td> </tr> <tr nosave="" valign="top"> <td nosave="">04/09/01</td>
    967 <td>SR</td> <td>2.3b</td> <td>B</td>
    968 <td>Austausch der GeisterrÀnder fÃŒr die
    969 zeitgefilterten
    970 Felder
    971 direkt nach DurchfÃŒhrung der Filterung (war fehlerhaft seit
    972 Entfernen
    973 der Zeitebene t+dt (Version 2.2) und fÃŒhrte zu sehr kleinen
    974 Störungen
    975 an den seitlichen RÀndern der Teilgebiete).&nbsp; <p><b>Achtung:</b>
    976 Der Inhalt der Testergebnis-Datei Àndert
    977 sich durch
    978 diese Fehlerkorrektur.</p> </td> <td>prognostic_equations</td>
    979 </tr> <tr nosave="" valign="top"> <td nosave="">09/11/01</td> <td>SR</td> <td>2.3c</td>
    980 <td>N</td> <td>Farbe entlang der
    981 PartikelschwÀnze kann sich
    982 Ã€ndern. Einschalten
    983 der Partikeladvektion bei FortsetzungslÀufen möglich.</td>
    984 <td>advec_particles, init_particles, modules, package_parin,
    985 plot_dvrp</td> </tr> <tr nosave="" valign="top">
    986 <td nosave="">16/04/02</td> <td>SR</td>
    987 <td>2.3d</td> <td>N</td> <td>Vorgabe
    988 von Randbedingungen fÃŒr Partikeladvektion
    989 möglich.
    990 Partikeldaten können fÃŒr spÀtere Analysen
    991 auf Datei
    992 geschrieben
    993 werden (Unit 85). <tt>PARTICLE</tt>-Datentyp
    994 enthÀlt
    995 Informationen
    996 ÃŒber Partikelgeschwindigkeitskomponenten und
    997 Startposition.&nbsp; <p>Skalartransport sowie entsprechende
    998 Datenausgaben können
    999 durch
    1000 eigene Parameter gesteuert werden (nicht mehr ÃŒber die
    1001 Feuchteparameter).&nbsp; </p> <p>Im Fall von
    1002 pdims(1)=1 (eindimensionales virtuelles
    1003 Prozessornetz in
    1004 y-Richtung) werden die zyklischen Randbedingungen in x-Richtung durch
    1005 direktes
    1006 Umspeichern anstatt durch&nbsp; <tt>sendrecv </tt>realisiert.
    1007 Ebenso
    1008 werden
    1009 die Transponierungen xz, yz, zx&nbsp; und zy eingespart (es wird
    1010 aber
    1011 weiter
    1012 umsortiert).&nbsp; </p> <p>Im Fall von
    1013 3D-Plotausgaben Aufruf von ftpcopy-Script durch
    1014 batch_scp-Script
    1015 ersetzt (dient der Ermittelung von Dateizyklusnummern als Information
    1016 fÃŒr
    1017 die AVS-fld-Datei).&nbsp; </p> <p>Bei fehlerhafter
    1018 Eröffnung einer CPU_MEASURES-Datei
    1019 werden erneute
    1020 Eröffnungsversuche durchgefÃŒhrt.</p> </td>
    1021 <td>advec_particles, check_open, check_parameters,
    1022 exchange_horiz, flow_statistics,
    1023 header, init_particles, modules, package_parin, parin, plot_2d,
    1024 plot_3d,
    1025 prognostic_equations, read_var_list, transpose_xz, transpose_yz,
    1026 transpose_zx,
    1027 transpose_zy, write_var_list</td> </tr> <tr nosave="" valign="top"> <td nosave="">02/05/02</td>
    1028 <td>SR</td> <td>2.3e</td> <td>B</td>
    1029 <td>WiedereinfÃŒhrung der 3D-Felder fÃŒr die
    1030 Zeitebene
    1031 t+dt, die
    1032 notwendig ist, damit in den Diffusionstermen bei Leapfrog-Zeitschritten
    1033 mit der korrekten Zeitebene t-dt gearbeitet wird. Seit Version 2.2
    1034 wurde
    1035 fÀlschlicherweise die Zeitebene t+dt verwendet. Asselin-Filter
    1036 ist
    1037 jetzt wieder eigenstÀndiges Unterprogramm. <br>
    1038 Die WiedereinfÃŒhrung dieser dritten Zeitebene ist auch
    1039 Voraussetzung
    1040 fÃŒr die in der nÀchsten Version geplante skalare
    1041 Optimierung.&nbsp; <p>Fehler bei Berechnung von
    1042 Ausgabezeitpunkten eliminiert (trat
    1043 auf, wenn
    1044 bei FortsetzungslÀufen von AusgabeabstÀnden 0.0 auf
    1045 von Null
    1046 verschiedene Werte gewechselt werden sollte).&nbsp; </p> <p><b>Achtung:</b>
    1047 Der Inhalt der Testergebnis-Datei Àndert
    1048 sich durch
    1049 diese Fehlerkorrektur.</p> </td> <td>init_3d_model,
    1050 leap_frog, modules, prognostic_equations,
    1051 swap_timelevel&nbsp; <p><b>Neu:</b> <br>
    1052 asselin_filter</p> </td> </tr> <tr nosave="" valign="top"> <td>02/05/02</td> <td>SR</td>
    1053 <td>2.3e</td> <td>N/C</td> <td>Kleinere
    1054 Anpassungen an IBM-Regatta-Systeme in
    1055 check_parameters, cpu_log.&nbsp; <p>Modul singleton in
    1056 eigenstÀndige Datei
    1057 ÃŒberfÃŒhrt.&nbsp; </p> <p>Global_min_max
    1058 arbeitet mit REAL*4, um Komplikationen auf
    1059 32-bit-Rechnern
    1060 zu vermeiden (Datentyp MPI_2REAL mÃŒsste dort sonst auf
    1061 MPI_2DOUBLE_PRECISION
    1062 geÀndert werden). <br>
    1063 Horizontale Geschwindigkeitskomponenten fÃŒr Partikeladvektion
    1064 werden exakt zwischen den jeweils benachbarten horizontalen
    1065 GitterflÀchen
    1066 interpoliert.</p> </td> <td nosave="">advec_particles,
    1067 check_parameters, cpu_log,
    1068 global_min_max,
    1069 modules&nbsp; <p><b>Neu:</b> <br>
    1070 singleton</p> </td> </tr> <tr nosave="" valign="top"> <td nosave="">11/06/02</td>
    1071 <td>SR</td> <td>2.4</td> <td>N/C</td>
    1072 <td>Optimierung und Anpassungen fÃŒr einzelne Knoten der
    1073 IBM-Regatta-Systeme. <p><b>Skalare (Cache) Optimierung:</b>
    1074 Tendenzterme werden
    1075 innerhalb einer
    1076 großen (i,j)-Schleife berechnet, die nun jeweils die gesamte
    1077 prognostische
    1078 Gleichung umfasst. Schleifenindices i und j werden an die
    1079 Tendenzunterprogramme
    1080 als Argumente ÃŒbergeben. Die Tendenzunterprogramme sind als
    1081 Module
    1082 geschrieben, die mittels Technik der ÃŒberladenen Funktionen
    1083 auch
    1084 ohne
    1085 diese Indices i und j aufgerufen werden können, und dann wie
    1086 in
    1087 frÃŒheren
    1088 Versionen funktionieren (d.h. in ihnen laufen die Schleifen
    1089 ÃŒber
    1090 alle
    1091 3 Dimensionen). Solche Teile der prognostischen Gleichungen, die
    1092 globale
    1093 Kommunikation beinhalten, sind vor die (i,j)-Schleife gezogen. Falls
    1094 ausschließlich
    1095 mit Piascek-Williams-Advektion gearbeitet wird, werden alle
    1096 prognostischen
    1097 Gleichungen in einer einzigen (i,j)-Schleife gerechnet. </p> <p><b>Kommunikationsoptimierung:</b>
    1098 ZusÀtzliche
    1099 Implementierung einer
    1100 1D-Gebietszerlegung in x-Richtung. Mit dem neuen direkten
    1101 Drucklöser
    1102 (poisfft_hybrid) werden dadurch 4 von 6 notwendigen Transpositionen
    1103 eingespart.
    1104 Die 1D-Zerlegung wird automatisch bei Verwendung dieses neuen
    1105 Lösers
    1106 aktiviert. Austausch von GeisterrÀndern in y-Richtung wird bei
    1107 dieser
    1108 1D-Zerlegung durch einfache zyklische Randbedingungen ersetzt. </p>
    1109 <p><b>Kleinere Anpassungen:</b> String-Vergleiche
    1110 erfordern beim
    1111 IBM-Compiler
    1112 in der Regel den Einsatz der TRIM-Funktion, um
    1113 ÃŒberschÃŒssige
    1114 Blanks am Ende des Strings abzuschneiden (sonst liefert der Vergleich
    1115 .F.). <br>
    1116 Lokal allokierte Felder t.w. in sogenannte automatische Felder
    1117 umgewandelt
    1118 (gÃŒnstiger, um Gefahr von eventuellen Speicherlecks zu
    1119 vermeiden).
    1120 Einige Feldoperationen wurden wegen schlechter Performance auf der IBM
    1121 entfernt (s. pres). </p> <p><b>Achtung: </b>Die
    1122 Ãœbersetzung des Modells erfordert
    1123 aufgrund
    1124 der Vielzahl nunmehr eingesetzter Module die Verwendung des
    1125 make-Mechanismus,
    1126 um die korrekte Reihenfolge bei der Übersetzung der
    1127 Programmteile
    1128 zu gewÀhrleisten. Die Beschreibung dieser
    1129 AbhÀngigkeiten
    1130 erfolgt
    1131 in der Datei<tt> Makefile</tt>, die zusammen mit den
    1132 Programmdateien
    1133 abgelegt
    1134 ist und ebenfalls unter RCS-Verwaltung steht. </p> <p>Im
    1135 User-Interface ist das Unterprogramm<tt> user_actions </tt>nun
    1136 ebenfalls
    1137 als Modul geschrieben und bedient sich der Methode der
    1138 ÃŒberladenen
    1139 Funktionen. Existierende benutzereigene Software muss entsprechend
    1140 angepasst
    1141 werden.</p> </td> <td>advec_s_pw, advec_s_up,
    1142 advec_u_pw, advec_u_up, advec_v_pw,
    1143 advec_v_up,
    1144 advec_w_pw, advec_w_up, buoyancy, calc_precipitation, calc_radiation,
    1145 calc_spectra,
    1146 check_parameters, coriolis, diffusion_e, diffusion_s, diffusion_u,
    1147 diffusion_v,
    1148 diffusion_w, diffusivities, exchange_horiz, exchange_horiz_2d,
    1149 global_min_max,
    1150 header, impact_of_latent_heat, init_pegrid, leap_frog, modules,
    1151 plot_2d,
    1152 plot_3d, plot_spectra, poisfft, pres, production_e,
    1153 prognostic_equations,
    1154 user_interface, <p><b>Neu:</b> <br>
    1155 fft_for_1d_decomp, Makefile, poisfft_hybrid,&nbsp;</p> </td>
    1156 </tr> <tr nosave="" valign="top"> <td nosave="">11/06/02</td> <td>SR</td> <td>2.4</td>
    1157 <td>B</td> <td>Fehlende Variablenvereinbarung in <tt>advec_particles</tt>
    1158 ergÀnzt.</td> <td>advec_particles</td> </tr>
    1159 <tr> <td valign="top">12/09/02</td> <td valign="top">SR</td> <td valign="top">2.4a</td>
    1160 <td valign="top">N</td> <td valign="top">Partikel
    1161 können mit TrÀgheit versehen
    1162 werden und
    1163 einen Dichteunterschied zum umgebenden Fluid haben. Zur Steuerung dient
    1164 der neue Paketparameter <tt>density_ratio</tt>.</td>
    1165 <td valign="top">advec_particles, header, init_particles,
    1166 modules, package_parin</td> </tr> <tr> <td valign="top">12/09/02</td> <td valign="top">SR</td>
    1167 <td valign="top">2.4a</td> <td valign="top">B</td>
    1168 <td valign="top">Fehler in Berechnung der Anfangsprofile
    1169 von pt
    1170 und q entfernt
    1171 (obere Feldgrenze von 10 konnte in <tt>pt_vertical_gradient_level_ind</tt>
    1172 ÃŒberschritten werden). Fehler fÃŒhrte unter
    1173 UmstÀnden zu
    1174 "segmentation fault" bei Verwendung sehr großer
    1175 Gitterpunktzahlen
    1176 in z-Richtung. <p>Fehler in Berechnung der v-Komponente am
    1177 unteren Rand
    1178 entfernt, die
    1179 fÃŒr den Scherungsproduktionsterm der TKE verwendet wird
    1180 (Variable
    1181 v_0). FÀlschlicherweise wurde zur Berechnung u(k=1) statt
    1182 v(k=1)
    1183 verwendet.</p> </td> <td valign="top">check_parameters,
    1184 modules, production_e</td> </tr> <tr> <td valign="top">19/12/02</td> <td valign="top">SR</td>
    1185 <td valign="top">2.5</td> <td valign="top">N</td>
    1186 <td valign="top">Restart times can be set by user with new
    1187 runtime (d3par)
    1188 parameters <tt>restart_time</tt> and <tt>dt_restart</tt>.
    1189 Run
    1190 description
    1191 header is written on file CONTINUE_RUN. Output of cpu statistics
    1192 changed
    1193 (PE results are now collected on PE0 in order to calculate mean cpu
    1194 statistics).
    1195 Output of warnings in the job protocol in case of negative measured
    1196 cpu-times.
    1197 Remaining cpu-time is also evaluated on IBM-Regatta.</td> <td valign="top">cpu_log, cpu_statistics,
    1198 check_parameters,header, leap_frog,
    1199 local_tremain, local_tremain_ini, modules,&nbsp; palm,&nbsp; <p><b>new:</b>
    1200 <br>
    1201 check_for_restart </p> <p><b>deleted:</b> <br>
    1202 check_cpu_time</p> </td> </tr> <tr> <td valign="top">&nbsp;<br> </td> <td valign="top">&nbsp;<br> </td> <td valign="top">&nbsp;<br> </td> <td valign="top">C</td> <td valign="top">Unit
    1203 14 (BINOUT) must be opened using a special
    1204 process
    1205 id string, because on IBM, the PE rank differs between communicators
    1206 MPI_COMM_WORLD
    1207 and comm_2d. This leads to a mismatch between filename-PE-number and
    1208 PE-number
    1209 written on file. As the consequence, these files could not be read by
    1210 restart-jobs.
    1211 Reading of array <tt>hom</tt> moved from <tt>init_3d_model
    1212 </tt>to <tt>read_var_list</tt>
    1213 (binary version number incremented to 2.2). <p><b>Further
    1214 optimization for IBM-Regatta-systems:</b> <br>
    1215 Additional optimization of the hybrid-solver for multinode usage
    1216 (overlapping
    1217 of communication and computation). </p> <p>Further cache
    1218 optimization by using strides and joining loops (<tt>hybrid_solver,
    1219 pres</tt> and <tt>timestep</tt>). Joining of
    1220 MPI_ALLREDUCE calls in
    1221 timestep. </p> <p>In case of 1d-decomposition along x
    1222 only a part of the
    1223 integral divisor
    1224 conditions is checked, on IBM hosts a 1d-decomposition along x is the
    1225 default,
    1226 a switch from Poisson-FFT-solver to the hybrid-solver is made in case
    1227 of
    1228 1d-decomposition along x, the hybrid-solver does not force a
    1229 1d-decomposition
    1230 any more. </p> <p>Array notation changed to do-loop
    1231 constructs due to better
    1232 performance. </p> <p>Cyclic boundary conditions along <tt>y</tt>
    1233 used instead of
    1234 sendrecv
    1235 in case of a 1d-decomposition along <tt>x</tt>. SENDRECV
    1236 replaced by
    1237 nonblocking
    1238 routines ISEND and IRECV in <tt>exchange_horiz.f90</tt>. </p>
    1239 <p>Speed optimization by removing MINVAL/MAXVAL calls and by
    1240 handling <br>
    1241 the "abs" case in a different way than the min/max cases (routine <tt>global_min_max</tt>).</p>
    1242 </td> <td valign="top">asselin_filter, check_open,
    1243 exchange_horiz,
    1244 global_min_max,
    1245 init_3d_model, init_pegrid, parin, poisfft_hybrid, read_var_list,
    1246 timestep,
    1247 write_3d_binary, write_var_list</td> </tr> <tr> <td valign="top"><br> </td> <td valign="top"><br>
    1248 </td> <td valign="top"><br> </td> <td valign="top">B</td> <td valign="top">Correction
    1249 of mixing length term (l(k)/ll(k)).
    1250 The condition
    1251 kh=3*km in the unstable case is now also exactly met in the wall
    1252 adjustment
    1253 region. Factor 0.7 in wall adjustment part replaced by variable <tt>wall_adjustment_factor</tt>,
    1254 which is set to 1.8 in <tt>modules.f90</tt>. The factor
    1255 0.7 was the
    1256 possible
    1257 reason for 2-delta-x-waves, which were observed since version 2.1d. <p>Calculation
    1258 of deformation tensor re-designed (<tt>production_e</tt>). </p>
    1259 <p>STOP statements replaced by call of new subroutine <tt>local_stop,
    1260 </tt>where
    1261 MPI_FINALIZE is called before STOP in case of a parallel environment. </p>
    1262 <p>ISO2D parameter dp set to true for ibm hosts. </p> <p>tend=p
    1263 added in <tt>pres</tt> after calling sor method.</p>
    1264 </td> <td valign="top">advec_s_bc, buoyancy,
    1265 check_open,
    1266 check_parameters, close_file,
    1267 coriolis, diffusion_e, diffusivities, fft_for_1d_decomp,
    1268 flow_statistics,
    1269 init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
    1270 parin,
    1271 plot_2d, poisfft, pres, read_var_list, user_interface,&nbsp; <p><b>new:</b>
    1272 <br>
    1273 local_stop, production_e</p> </td> </tr> <tr>
    1274 <td valign="top">03/03/03</td> <td valign="top">SR</td>
    1275 <td valign="top">2.5a</td> <td valign="top">N</td>
    1276 <td valign="top">Particle velocities are also stored in
    1277 array
    1278 particles in
    1279 case of zero density ratio. Steering of variables by dvrp browser
    1280 included.</td> <td valign="top">advec_particles,
    1281 init_dvrp, modules,</td> </tr> <tr> <td valign="top"><br> </td> <td valign="top"><br>
    1282 </td> <td valign="top"><br> </td> <td valign="top">C</td> <td valign="top">AVS
    1283 data format changed from float to xdr_float
    1284 (needed
    1285 on linux machines <br>
    1286 due to the little/big endian problem). Updates for new version of dvrp
    1287 software (e.g. using module dvrp is now mandatory).</td> <td valign="top">close_file, init_dvrp, leap_frog, plot_dvrp</td>
    1288 </tr> <tr> <td valign="top"><br> </td>
    1289 <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top">B</td>
    1290 <td valign="top">Error in particle inertia part removed
    1291 (exp_arg
    1292 must not
    1293 contain the timestep). <br>
    1294 Error in calculation of the vertical flux of resolved scale energy
    1295 (profile 57) removed. Displacement for integers in mpi_particle_type
    1296 reduced
    1297 from 16 to 8 on ibm.</td> <td valign="top">advec_particles,
    1298 flow_statistics, init_particles</td> </tr> <tr> <td valign="top">12/03/03</td> <td valign="top">SR</td>
    1299 <td valign="top">2.6</td> <td valign="top">N</td>
    1300 <td valign="top"><b>Version optimized for NEC-SX6
    1301 parallel-vector
    1302 machines.&nbsp;</b> <p>There are two main changes. A
    1303 new vectorizable routine <tt>prognostic_equations_vec</tt>
    1304 is added, where cache optimizations are undone. The tendency
    1305 subroutines
    1306 called by <tt>prognostic_equations_vec</tt> contain the
    1307 full 3d-loops
    1308 (compared
    1309 with the cache-optimized versions where only loops over k are carried
    1310 out).
    1311 Additionally, a new pressure solver <tt>poisfft_hybrid_vec</tt>
    1312 is
    1313 added,
    1314 which requires a 1d-domain-decomposition (like poisfft_hybrid). In this
    1315 solver, a very fast FFT from Clive Temperton (ECMWF) is&nbsp;
    1316 optionally
    1317 available by choosing <tt>fft_method </tt>= <i>'temperton-algorithm'</i>.&nbsp;
    1318 </p> <p>Additional changes in <tt>flow_statistics</tt>
    1319 to allow
    1320 better vectorization. </p> <p>Small changes in routines <tt>diffusivities</tt>
    1321 and <tt>pres</tt>
    1322 which
    1323 caused run time errors on IBM and NEC due to compiler problems. </p>
    1324 <p>Reading of environment variable <tt>tasks_per_node</tt>
    1325 moved
    1326 from routine <tt>poisfft_hybrid</tt>
    1327 to routine <tt>parin</tt>. </p> <p><b>Changes
    1328 in makefile:</b> modules and user_interface now
    1329 depend on
    1330 the f90 files, dependency of singleton added, LDFLAGS moved to the end
    1331 of PROG rule, temperton_fft added.</p> </td> <td valign="top">advec_s_pw, advec_s_up, advec_u_pw, advec_u_up,
    1332 advec_v_pw,
    1333 advec_v_up, advec_w_pw, advec_w_up, buoyancy, calc_precipitation,
    1334 calc_radiation,
    1335 check_parameters, coriolis, cpu_log, diffusion_e, diffusion_s,
    1336 diffusion_u,
    1337 diffusion_v, diffusion_w, diffusivities, fft_for_1d_decomp, header,
    1338 impact_of_latent_heat,
    1339 init_pegrid, leap_frog, local_tremain, modules, parin, poisfft,
    1340 poisfft_hybrid,
    1341 pres, production_e, prognostic_equations, user_interface <p><b>new:</b>
    1342 <br>
    1343 temperton_fft</p> </td> </tr> <tr> <td valign="top"><br> </td> <td valign="top"><br>
    1344 </td> <td valign="top"><br> </td> <td valign="top">B</td> <td valign="top">tend=p
    1345 added in routine <tt>pres</tt> after
    1346 calling sor
    1347 method.</td> <td valign="top">pres</td> </tr>
    1348 <tr> <td valign="top">14/03/03</td> <td valign="top">SR</td> <td valign="top">2.6a</td>
    1349 <td valign="top">N</td> <td valign="top">Additional
    1350 vector optimization for NEC-SX6. <p>Optional system-specific
    1351 random number generator available
    1352 (for equal
    1353 distributed numbers). </p> <p>Define strings in all
    1354 relevant subroutines changed from&nbsp; </p> <p><tt>&nbsp;&nbsp;&nbsp;&nbsp;
    1355 #if defined( define_string )</tt> </p> <p>to </p>
    1356 <p><tt>&nbsp;&nbsp;&nbsp;&nbsp; #if
    1357 defined( __define_string )</tt> </p> <p><b>Caution:
    1358 </b>The relevant subroutines are NOT listed in
    1359 the right
    1360 column!</p> </td> <td valign="top">asselin_filter,
    1361 check_parameters, diffusion_e,
    1362 diffusivities,
    1363 disturb_field, global_min_max, header, local_tremain, modules, parin,
    1364 poisfft_hybrid,
    1365 pres, read_var_list, write_var_list</td> </tr> <tr>
    1366 <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top"><br>
    1367 </td> <td valign="top">B</td> <td valign="top">Error in particle boundary condition removed
    1368 (velocity must
    1369 be inverted in case of reflection)</td> <td valign="top">advec_particles</td>
    1370 </tr> <tr> <td valign="top">16/04/03</td>
    1371 <td valign="top">SR</td> <td valign="top">2.6b</td>
    1372 <td valign="top">N</td> <td valign="top">Time
    1373 series output of Monin Obukhov length. <p>Temperton fft can now
    1374 be used for all hosts and every domain
    1375 decomposition.
    1376 Abort in case of Temperton fft, if number of gridpoints along x and/or
    1377 y contain illegal factors.&nbsp; </p> <p>Index values
    1378 for the extrema found in global_min_max are
    1379 limited to
    1380 the range 0..nx, 0..ny (on IBM machines -1 and nx+1/ny+1 occured which
    1381 produced different RUN_CONTROL output compared to other machines). </p>
    1382 <p>Output format of iteration count in routine run_control
    1383 enlarged.</p> </td> <td valign="top">check_parameters,
    1384 fft_for_1d_decomp,
    1385 global_min_max, init_pegrid,
    1386 modules, plot_ts, poisfft, run_control, temperton_fft</td> </tr>
    1387 <tr> <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top"><br>
    1388 </td> <td valign="top">B</td> <td valign="top">Additional checks of variables <tt>hybrid_solver</tt>
    1389 and <tt>host</tt>
    1390 (<tt>hybrid_solver</tt> must not be used for a
    1391 2d-domain-decomposition, <tt>host</tt>
    1392 should be set by setting environment variable <tt>localhost</tt>).
    1393 <p>Header output for mixing length limitations revised.</p>
    1394 </td> <td valign="top">check_parameters, header</td>
    1395 </tr> <tr> <td valign="top">09/05/03</td>
    1396 <td valign="top">SR</td> <td valign="top">2.7</td>
    1397 <td valign="top">N</td> <td valign="top"><b>Version
    1398 running on Linux Clusters using MPICH
    1399 and Intel
    1400 FORTRAN compiler (ifc)</b> <p>So far, only absolutely
    1401 neccessary changes have been done
    1402 (possible
    1403 optimizations will follow in a later version): </p> <p>New
    1404 time measurements for Linux (ifc) environment added. </p> <p>Some
    1405 parameters in MPI calls had to be modified (arrays had to
    1406 be replaced
    1407 by the first element of the regarding array) in order to fulfill f90
    1408 type
    1409 and rank requirements, since on the MUK-cluster a FORTRAN90-version of
    1410 MPI is used. This also required to replace "mpif.h" by using a special
    1411 module (named <tt>mpi</tt>).&nbsp; I did not find out
    1412 how character
    1413 strings
    1414 can be send with MPI. Therefore, these strings are transformed to
    1415 integers,
    1416 before they are send, and transformed back to characters on the
    1417 receiving
    1418 PE. </p> <p>On the MUK-cluster, only PE0 is able to read
    1419 the values of
    1420 environment
    1421 variables. Therefore, these values are communicated via broadcast to
    1422 the
    1423 other PEs. </p> <p>1d-decomposition is set as the default
    1424 on Linux Clusters.
    1425 Character
    1426 strings have to be transformed to integer </p> <p>Smaller
    1427 changes: </p> <p>Batch_scp paths for IBM, NEC and Linux
    1428 added</p> </td> <td valign="top">check_open,
    1429 cpu_log, flow_statistics,
    1430 init_pegrid, local_getenv,
    1431 modules, palm, poisfft_hybrid</td> </tr> <tr> <td valign="top"><br> </td> <td valign="top"><br>
    1432 </td> <td valign="top"><br> </td> <td valign="top">B</td> <td valign="top">Measurements
    1433 on IBM are now using function <tt>irtc</tt>,
    1434 which allows correct measurements for jobs running over the 24:00
    1435 timeline.</td> <td valign="top">cpu_log,
    1436 local_tremain, local_tremain_ini</td> </tr> <tr> <td valign="top">01/08/03</td> <td valign="top">SR</td>
    1437 <td valign="top">2.7a</td> <td valign="top">B</td>
    1438 <td valign="top">Check that the number processors is also
    1439 an
    1440 integral divisor
    1441 of the number&nbsp; of gridpoints along y in case of a
    1442 1d-decomposition
    1443 along x. <p>Error concerning the multinode-version of
    1444 poisfft_hybrid
    1445 removed. It
    1446 was caused by the Linux changes of version 2.7 and led to program abort
    1447 due to MPI errors in <tt>MPI_ALLTOALL</tt>. </p> <p>No
    1448 abort on t3e-systems if system specific routines are used. </p> <p>Array<tt>
    1449 sums </tt>is initialized in<tt> init_3d_model </tt>before
    1450 the first call of<tt> pres</tt>. Call of<tt>
    1451 init_cloud_physics </tt>moved
    1452 before<tt> init_particles</tt>.</p> </td> <td valign="top">fft_1dd_init, init_3d_model, init_pegrid,
    1453 poisfft_hybrid</td> </tr> <tr> <td valign="top"><br>
    1454 </td> <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top">N</td>
    1455 <td valign="top">Interactive steering of dvrp-graphic
    1456 features by
    1457 dvrp-browser
    1458 plugin extended (position of slicers, threshold values of isosurfaces)
    1459 . New dvrp_graphics package parameter<tt> slicer_range_limits_dvrp</tt>.</td>
    1460 <td valign="top">init_dvrp, modules, package_parin,
    1461 plot_dvrp</td> </tr> <tr> <td valign="top">29/10/03</td>
    1462 <td valign="top">SR</td> <td valign="top">2.7b</td>
    1463 <td valign="top">N</td> <td valign="top">In
    1464 the multigrid method, on a defined level,
    1465 data are gathered
    1466 on PE0 and further calculations are carried out only on this PE. New<tt>
    1467 d3par </tt>parameter <tt>mg_switch_to_pe0_level</tt>.
    1468 <p>Particle groups implemented. New data type<tt>
    1469 particle_groups_type </tt>and data type<tt> particle_type </tt>modified.
    1470 Version
    1471 numbers are
    1472 output on the particle files. New<tt> particles_par </tt>parameter<tt>
    1473 diameter</tt>. Parameter name<tt> uniform_psize</tt>
    1474 changed to<tt>
    1475 dvrp_psize</tt>.
    1476 Parameters<tt> density_ratio </tt>is now an array.</p>
    1477 </td> <td valign="top">advec_particles, check_open,
    1478 exchange_horiz,
    1479 header, init_particles,
    1480 init_pegrid, modules, package_parin, parin, poismg</td> </tr>
    1481 <tr> <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top"><br>
    1482 </td> <td valign="top">C</td> <td valign="top">Random number generator from numerical recipes
    1483 is now rewritten
    1484 as a module. In restart runs the seed of this generator is set to the
    1485 last
    1486 values of the previous run in order to keep the sequence of the random
    1487 numbers. New binary version 2.2. <p>Buffer is flushed for file
    1488 RUN_CONTROL immediately after every
    1489 output
    1490 on IBM and Linux cluster.</p> </td> <td valign="top">advec_particles,
    1491 disturb_field, init_3d_model,
    1492 init_particles,
    1493 random_function, random_gauss, run_control, write_3d_binary</td> </tr>
    1494 <tr> <td valign="top"><br> </td> <td valign="top"><br> </td> <td valign="top"><br>
    1495 </td> <td valign="top">E</td> <td valign="top">In routine buoyance, horizontal mean
    1496 temperature
    1497 is now
    1498 taken from array hom instead of array sums (otherwise inconsistence in
    1499 case of using more than one statistical region). <p>Information
    1500 about the time of the last timestep change added
    1501 to the
    1502 restart file. </p> <p>System call of<tt> batch_scp </tt>on
    1503 IBM corrected.</p> </td> <td valign="top">buoyancy,
    1504 check_open, read_var_list,
    1505 write_var_list</td> </tr> <tr> <td style="vertical-align: top;">28/01/04</td> <td style="vertical-align: top;">SR</td> <td style="vertical-align: top;">2.8</td> <td style="vertical-align: top;">N</td> <td style="vertical-align: top;">Runge-Kutta schemes (2nd and
    1506 3rd
    1507 order)
    1508 for time integration implemented. The third order scheme is the new
    1509 default.
    1510 It allows the timestep to be 0.9*CFL, which is much larger than for the
    1511 former default leapfrog scheme.&nbsp; The intermediate steps, which
    1512 are
    1513 part of these schemes, are realized by an additional loop within routine<span style="font-family: monospace;">
    1514 time_integration&nbsp;</span>(currently<span style="font-family: monospace;">
    1515 leap_frog</span>, but this routine will be renamed soon).
    1516 Steering
    1517 variables<span style="font-family: monospace;">
    1518 at&nbsp;</span>and<span style="font-family: monospace;">
    1519 bt&nbsp;</span>have
    1520 been replaced by array<span style="font-family: monospace;">
    1521 sct</span>.
    1522 , which is particularly used in the prognostic equations. Values of
    1523 this
    1524 steering array are calculated within the new routine<span style="font-family: monospace;">
    1525 timestep_scheme_steering</span>. <p>When using Runge-Kutta
    1526 schemes,&nbsp; the timestep increment
    1527 is freely
    1528 allowed to adjust after each timestep (the older schemes are using some
    1529 restrictions, see routine<span style="font-family: monospace;">
    1530 timestep</span>).
    1531 Also, routine<span style="font-family: monospace;">
    1532 run_control&nbsp;</span>is
    1533 not automatically called in case of timestep changes, when Runge-Kutta
    1534 schemes are switched on. </p> <p>The old leapfrog scheme
    1535 is still implemented and should
    1536 produce the
    1537 same results as in the previous version(s)! </p> <p>Depending
    1538 on the user experience, further adjustments to the
    1539 Runge-Kutta
    1540 schemes may be necessary within the next minor versions.&nbsp; </p>
    1541 <p><span style="font-weight: bold;">Attention:</span>
    1542 <br>
    1543 The content of the testresult-file (run control output) has
    1544 significantly
    1545 changed due to the new default timestep scheme!</p> </td> <td style="vertical-align: top;">check_parameters, header,
    1546 init_3d_model,
    1547 init_rankine, leap_frog, modules, prognostic_equations, read_var_list,
    1548 swap_timelevel, timestep, write_var_list <p><span style="font-weight: bold;">new:</span> <br>
    1549 timestep_scheme_steering</p> </td> </tr> <tr>
    1550 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C</td> <td style="vertical-align: top;">Output of particle infos in
    1551 subroutine<span style="font-family: monospace;">
    1552 allocate_prt_memory&nbsp;</span>on demand only. <p>Type<span style="font-family: monospace;"> log&nbsp;</span>(used
    1553 for
    1554 cpu time measurements) changed to<span style="font-family: monospace;">
    1555 logpoint&nbsp;</span>due to name conflict with FORTRAN
    1556 intrinsic<span style="font-family: monospace;">
    1557 log.</span></p> </td> <td style="vertical-align: top;">advec_particles,
    1558 cpu_log,&nbsp;</td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E</td> <td style="vertical-align: top;">In case of opening unit 80, a
    1559 barrier
    1560 is set only for the first call of<span style="font-family: monospace;">
    1561 check_open&nbsp;</span>(from routine<span style="font-family: monospace;">
    1562 init_particles</span>), in order to avoid the possibility of
    1563 hanging
    1564 jobs,
    1565 which may occur if unit 80 is opened within routine<span style="font-family: monospace;">
    1566 allocate_prt_memory</span>.</td> <td style="vertical-align: top;">check_open</td> </tr>
    1567 <tr> <td style="vertical-align: top;">30/01/04</td>
    1568 <td style="vertical-align: top;">SR</td> <td style="vertical-align: top;">2.8a</td> <td style="vertical-align: top;">N</td> <td style="vertical-align: top;">In order to prepare the code
    1569 for
    1570 the simulation
    1571 of flow around buildings (to be realized in one of the next major
    1572 versions),
    1573 the lower<span style="font-family: monospace;"> k&nbsp;</span>index<span style="font-family: monospace;">
    1574 nzb&nbsp;</span>has been replaced by a two-dimensional array<span style="font-family: monospace;">
    1575 nzb_2d&nbsp;</span>in many of the three-dimensional loops. So
    1576 far, all
    1577 elements of this array are set to<span style="font-family: monospace;">
    1578 nzb</span>. <p>This change should not effect simulation
    1579 results and cpu time
    1580 in any
    1581 way.</p> </td> <td style="vertical-align: top;">advec_s_pw,
    1582 advec_s_up,
    1583 advec_u_pw, advec_u_up,
    1584 advec_v_pw, advec_v_up, advec_w_pw, advec_w_up, asselin_filter,
    1585 buoyancy,
    1586 calc_liquid_water_content, calc_precipitation, calc_radiation,
    1587 coriolis,
    1588 diffusion_e, diffusion_s, diffusion_u, diffusion_v, diffusion_w,
    1589 diffusivities,
    1590 impact_of_latent_heat, init_3d_model, modules, production_e,
    1591 prognostic_equations,&nbsp;</td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C</td> <td style="vertical-align: top;">Euler step informations are
    1592 removed in
    1593 the run control output in case of Runge-Kutta schemes. Also, the
    1594 timestep
    1595 increment limitation is removed for the Runge-Kutta schemes. <p><span style="font-weight: bold;">Attention:</span> <br>
    1596 The content of the testresult-file (run control output) has changed
    1597 due to this modification.</p> </td> <td style="vertical-align: top;">run_control, timestep</td>
    1598 </tr> <tr> <td style="vertical-align: top;"><br>
    1599 </td> <td style="vertical-align: top;"><br> </td>
    1600 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E</td> <td style="vertical-align: top;">Velocity gradients at the
    1601 surface calculated
    1602 in routine production_e are now limited. In case of inhomogeneous
    1603 surface
    1604 heating small diffusivities (<span style="font-family: monospace;">km</span>)
    1605 sometimes caused very small timesteps due to this problem.</td> <td style="vertical-align: top;">production_e</td> </tr>
    1606 <tr> <td style="vertical-align: top;">30/04/04<br>
    1607 </td> <td style="vertical-align: top;">SR<br>
    1608 </td> <td style="vertical-align: top;">2.8b<br>
    1609 </td> <td style="vertical-align: top;">N<br> </td>
    1610 <td style="vertical-align: top;">The number of processors
    1611 along
    1612 the respective directions of the virtual processor grid must not be
    1613 integral divisors of the number of gridpoints along x, y or z any more.
    1614 In case that they are not integral divisors, the subdomains on the
    1615 processors at the upper borders of the virtual grid will contain less
    1616 gridpoints than the other subdomains (which are all of equal size).
    1617 Although this causes a load imbalance, only runs with very small
    1618 numbers of processors will feel a significant decrease of performance.
    1619 In order to be able to carry out the transpositions, array<span style="font-family: monospace;"> d </span>(and also
    1620 working array<span style="font-family: monospace;"> tend</span>)
    1621 have the same size on
    1622 all processors. This new feature is switched on by setting the
    1623 inipar-parameter<span style="font-family: monospace;">
    1624 grid_matching </span>= <span style="font-style: italic;">'match'</span>,
    1625 which is the
    1626 default now.<br> <br>
    1627 Routine<span style="font-family: monospace;"> poisfft </span>is
    1628 now
    1629 the
    1630 default for solving the Poisson-equation for the case of 2d- as well as
    1631 1d-domain-decompositions and has been changed from a subroutine to a
    1632 module. This routine now includes most of the optimization from the
    1633 (Ketelsen) routine<span style="font-family: monospace;">
    1634 poisfft_hybrid </span>and additionally allows 1d-decompositions
    1635 along y.<br> <span style="font-weight: bold;">ATTENTION:</span>
    1636 Routine<span style="font-family: monospace;">
    1637 poisfft_hybrid </span>might still be
    1638 faster when running PALM on more than one node of the IBM-Regatta,
    1639 although the difference is not very big. The <span style="font-family: monospace;">poisfft</span>-code
    1640 for a
    1641 decomposition along y has still a poor performance and needs further
    1642 optimization.<br> <br>
    1643 The spectra-package is now able to use all the available FFT-methods
    1644 (selected by inipar-parameter<span style="font-family: monospace;">
    1645 fft_method </span>).
    1646 Performance of the transpositions needed for calculating the spectra
    1647 has been improved by using new direct transpositions from z to y and
    1648 from y to x instead of two subsequent transpositions.<br> <br>
    1649 Runge-Kutta scheme implemented in the 1d-version (<span style="font-family: monospace;">init_1d_model</span>).
    1650 Diffusion
    1651 quantity arrays are allocated for previous timelevels only in case of
    1652 leapfrog scheme.<br> <br>
    1653 This version is adapted for use on COMPAQ-DECALPHA systems (main
    1654 changes: calling of SHAPE function within subroutine arguments (e.g.<span style="font-family: monospace;"> singleton</span>)
    1655 causes compiler errors, particle data type modified for better
    1656 alignment, DATA statements from modules removed because they caused
    1657 internal compiler errors).<br> </td> <td style="vertical-align: top;">advec_s_ups, advec_u_ups,
    1658 advec_v_ups, advec_w_ups, calc_spectra, check_parameters, fft_xy,
    1659 header, init_1d_model, init_3d_model, init_particles, init_pegrid,
    1660 modules, parin, plot_2d, poisfft, prandtl_fluxes, pres, read_var_list,
    1661 singleton, spline_x, spline_y, spline_z, time_integration, transpose,
    1662 write_3d_binary, write_var_list<br> </td> </tr> <tr>
    1663 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;">FFT routines renamed. Module<span style="font-family: monospace;"> fft_for_1d_decomp </span>renamed<span style="font-family: monospace;"> fft_xy</span>.
    1664 Subroutine<span style="font-family: monospace;"> leap_frog
    1665 </span>renamed<span style="font-family: monospace;">
    1666 time_integration</span>.<br> <br>
    1667 For all transpositions, MPI_ALLTOALL is used instead of MPI_ALLTOALLV.
    1668 The names of many transposition indices have been changed.<br> <br>
    1669 Inipar-parameter<span style="font-family: monospace;">
    1670 impulse_advec </span>renamed<span style="font-family: monospace;"> momentum_advec</span>.<br>
    1671 <br>
    1672 Reading of restart data is moved from<span style="font-family: monospace;"> init_3d_model </span>to
    1673 new routine <span style="font-family: monospace;">read_3d_binary</span>.<br>
    1674 <br>
    1675 All former transpose routines collected into one file.<br> </td>
    1676 <td style="vertical-align: top;">check_parameters,
    1677 flow_statistics, header, init_1d_model, init_3d_model, init_advec,
    1678 init_pegrid, palm, parin, poisfft, poisfft_hybrid, production_e,
    1679 prognostic_equations, read_var_list, sline_x, spline_y, write_var_list<span style="font-weight: bold;"><br> <br>
    1680 new:</span><br>
    1681 fft_xy, read_3d_binary, time_integration, transpose<br> <br>
    1682 <span style="font-weight: bold;">deleted:</span><br>
    1683 fft_for_1d_decomp, leap_frog, transpose_xy, transpose_xz, transpose_yx,
    1684 transpose_yz, transpose_zx, transpose_zy<br> </td> </tr>
    1685 <tr> <td style="vertical-align: top;"><br> </td>
    1686 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">Small errors in the
    1687 particle-package removed, which sometimes caused aborts of restart runs
    1688 on IBM.<br> <br>
    1689 Small error in calculating the time series profiles removed (array
    1690 bounds of some arrays needed for profil-output had to be increased).<br>
    1691 <br>
    1692 Function fft (singleton method) replaced by subroutine fftn due to
    1693 problems with 64-bit mode on IBM<br> </td> <td style="vertical-align: top;">advec_particles,
    1694 check_parameters, <br> </td> </tr> <tr> <td style="vertical-align: top;">26/03/05<br> </td>
    1695 <td style="vertical-align: top;">SR<br> </td>
    1696 <td style="vertical-align: top;">2.9<br> </td>
    1697 <td style="vertical-align: top;">N<br> </td> <td style="vertical-align: top;">Non-cyclic lateral boundary
    1698 conditions implemented.<br>
    1699 Dirichlet/Neumann conditions at the inflow/outflow can be used either
    1700 along x or along y. Cyclic conditions have to be used along the
    1701 remaining direction. In case of non-cyclic conditions along x (y), the
    1702 upper bound nxl (nyn) of array u (v) is enlarged by one gridpoint on
    1703 the rightmost (northest) processor. These array index informations are
    1704 passed to routine<span style="font-family: monospace;">
    1705 exchange_horiz </span>and<span style="font-family: monospace;">
    1706 disturb_field </span>by two
    1707 additional arguments. Boundary conditions are set with new
    1708 inipar-parameters<span style="font-family: monospace;">
    1709 bc_lr </span>and<span style="font-family: monospace;">
    1710 bc_ns</span>. A damping layer is
    1711 needed at the outflow in order to damp reflections (see new parameters<span style="font-family: monospace;"> km_damp_max </span>and<span style="font-family: monospace;"> outflow_damping_width</span>)
    1712 and an
    1713 additional disturbance is imposed near the inflow (see new parameters<span style="font-family: monospace;">&nbsp;
    1714 inflow_disturbance_begin </span>and<span style="font-family: monospace;"> inflow_disturbance_end</span>).
    1715 Non-cyclic conditions require the use of the multigrid-method for
    1716 solving the Poisson equation. Argument<span style="font-family: monospace;"> range </span>added
    1717 to routine<span style="font-family: monospace;">
    1718 boundary_conds </span>(where the
    1719 non-cyclic conditions are set). <br> <br>
    1720 Minor changes:<br>
    1721 Output of parameter<span style="font-family: monospace;">
    1722 datform </span>on
    1723 &amp;GLOBAL-Namelist (iso2d). This is set to <span style="font-style: italic;">'big_endian'</span> on
    1724 IBM- and
    1725 NEC-machines.<br> <br>
    1726 Number of particle groups are additionally calculated in<span style="font-family: monospace;"> header </span>(formerly
    1727 unknown).<br> </td> <td style="vertical-align: top;">advec_u_pw,
    1728 advec_u_up, advec_v_pw, advec_v_up, boundary_conds,
    1729 calc_liquid_water_content, check_parameters, close_file, coriolis,
    1730 diffusion_u, diffusion_v, diffusion_w, diffusivities, disturb_field,
    1731 exchange_horiz, header, init_3d_model, init_pegrid, init_pt_anomaly,
    1732 init_rankine, modules, parin, poismg, pres, prognostic_equations,
    1733 read_var_list, sor, time_integration, timestep, write_var_list<br>
    1734 </td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;"><span style="font-family: monospace;">pres </span>is called
    1735 by default only
    1736 at the last Runge-Kutta-substep, which spares a big amount of CPU-time
    1737 (see also new parameter<span style="font-family: monospace;">
    1738 call_psolver_at_all_substeps</span>). No pressure term in the
    1739 momentum
    1740 equations in case of Runge-Kutta-schemes.<br> <span style="font-weight: bold;">Attention:</span> <br>
    1741 The content of the testresult-file (run control output) has changed
    1742 due to this modification.<br> <br>
    1743 Program speedup by removing the exchange of ghost points in routines <span style="font-family: monospace;">calc_liquid_water_content</span>,
    1744 <span style="font-family: monospace;">diffusivities</span>,
    1745 .<br> <br>
    1746 Default value for residual limit increased from 1E-6 to 1E-4. Routine<span style="font-family: monospace;"> prolong </span>in<span style="font-family: monospace;"> poismg </span>simplified
    1747 (one call of<span style="font-family: monospace;">
    1748 exchange_horiz </span>spared).<br> </td> <td style="vertical-align: top;">calc_liquid_water_content,
    1749 diffusivities, modules, poismg, pres, time_integration,
    1750 timestep_scheme_steering<br> </td> </tr> <tr>
    1751 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">Calculation of vertical
    1752 particle
    1753 velocity (with inertia) corrected, exp_arg had a wrong sign.<br> <br>
    1754 (e)**1.5 replaced by e*SQRT(e) in init_1d_model because of wrong
    1755 results on NEC machines (as a side effect, the new calculation is much
    1756 faster).<br> <br>
    1757 Two errors concerning switch to PE0 (multigrid method) removed from<span style="font-family: monospace;"> init_pegrid</span>.<br>
    1758 <br>
    1759 Two errors in<span style="font-family: monospace;">
    1760 plot_2d </span>removed:
    1761 local_2d is allocated with upper bound<span style="font-family: monospace;"> nzt</span> (former<span style="font-family: monospace;"> nzt+1 </span>was
    1762 wrong), additional barrier in case that PE0 gathers data from the other
    1763 PEs, this barrier had to be set at the end of the gathering because
    1764 otherwise PE0 sometimes received wrong data on tag 0.<br> <br>
    1765 Use of module indices removed from routine<span style="font-family: monospace;"> split_1dd </span>in<span style="font-family: monospace;"> poisfft </span>since
    1766 it caused
    1767 errors in case of<span style="font-family: monospace;"> nx
    1768 /= ny </span>and
    1769 a 1D-decomposition along y.<br> <br>
    1770 Wrong re-definition of dx2 and dy2 in<span style="font-family: monospace;"> sor </span>removed.<br>
    1771 </td> <td style="vertical-align: top;">advec_particles,
    1772 init_1d_model,
    1773 init_pegrid, plot_2d, poisfft, sor<br> </td> </tr> <tr>
    1774 <td style="vertical-align: top;">23/04/05<br> </td>
    1775 <td style="vertical-align: top;">SR<br> </td>
    1776 <td style="vertical-align: top;">2.9a<br> </td>
    1777 <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;">Additional check for
    1778 incompatibilities between non-cyclic lateral boundary conditions and
    1779 other schemes.<br> <br>
    1780 fcl_factor renamed cfl_factor.<br> <br>
    1781 New local array sums_ll declared in flow_statistics instead of
    1782 temporarily using sums_l.<br> <br>
    1783 crmax (maximum number of crosses allowed in a plot of vertical
    1784 profiles) increased from 20 to 100.<br> </td> <td style="vertical-align: top;">calc_spectra, check_parameters,
    1785 flow_statistics, header, modules, parin, timestep<br> </td>
    1786 </tr> <tr> <td style="vertical-align: top;"><br>
    1787 </td> <td style="vertical-align: top;"><br> </td>
    1788 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">Revised calculation of output
    1789 time counters regarding a possible decrease of the output time interval
    1790 in case of restart runs.<br> <br>
    1791 Error removed in Dirichlet bottom boundary conditions for pt and q in
    1792 case of Runge-Kutta schemes.<br> <br> <span style="font-weight: bold;">batch_scp</span> calls
    1793 (needed
    1794 for determining correct filenames for AVS-fld-files) is given the
    1795 remote username as an additional argument.<br> <br>
    1796 Default setting of outflow_damping_width corrected.<br> <br>
    1797 Initial horizontal velocities at the lowest grid levels in the 1d-model
    1798 are set to a very small value in order to avoid wrong results and the
    1799 resulting too small timesteps.<br> <br>
    1800 Implicit counters i renamed i9 in modules due to declaration conflicts
    1801 with i in other subroutines (reported by Portland compiler).<br> </td>
    1802 <td style="vertical-align: top;">advec_particles,
    1803 boundary_conds,
    1804 check_open, check_parameters, init_1d_model, modules, time_integration<br>
    1805 </td> </tr> <tr> <td style="vertical-align: top;">18/05/05<br> </td>
    1806 <td style="vertical-align: top;">SR<br> </td>
    1807 <td style="vertical-align: top;">2.10<br> </td>
    1808 <td style="vertical-align: top;">N<br> </td> <td style="vertical-align: top;">NetCDF support implemented.<br>
    1809 Profiles, time series, spectra, cross-sections, 3d-volume-data and
    1810 particle data can now be output in NetCDF format (file handles
    1811 101-108). This output can be switched on with the new d3par-parameter <span style="font-family: monospace;">data_output_format</span>.
    1812 So far, this support is available on IBM systems at HLRN and on the NEC
    1813 system at DKRZ. Output in format suitable for graphic software <span style="font-weight: bold;">profil</span>, <span style="font-weight: bold;">iso2d</span> and <span style="font-weight: bold;">avs</span> is still
    1814 possible.<br> <br>
    1815 Output of cross sections for qv, vpt and lwp (liquid water path).<br>
    1816 </td> <td style="vertical-align: top;">advec_particles,
    1817 check_open,
    1818 check_parameters, close_file, header, modules, parin, plot_1d, plot_2d,
    1819 plot_3d, plot_spectra, plot_ts, read_var_list, write_var_list<br>
    1820 <br> <span style="font-weight: bold;">new:</span><br>
    1821 netcdf<br> </td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;">In <span style="font-family: monospace;">calc_spectra</span>, n
    1822 is assigned the
    1823 number of spectra (formerly, the number of spectra was given by n-1)<br>
    1824 <br>
    1825 Abort if <span style="font-family: monospace;">poisfft_hybrid</span>
    1826 is called in a non-parallel environment.<br> <br>
    1827 Default values of spectra package parameters <span style="font-family: monospace;">pl_spectra</span> and <span style="font-family: monospace;">spectra_direction</span>
    1828 changed.<br> </td> <td style="vertical-align: top;">calc_spectra,
    1829 check_parameters,
    1830 modules, pres, read_3d_binary, write_3d_binary<br> </td> </tr>
    1831 <tr> <td style="vertical-align: top;"><br> </td>
    1832 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">Missing argument in ffty
    1833 (non-parallel case) added.<br> <br>
    1834 Error in output of particle inertia information removed.<br> </td>
    1835 <td style="vertical-align: top;">poisfft, header<br>
    1836 </td> </tr> <tr> <td style="vertical-align: top;">05/07/05<br> </td>
    1837 <td style="vertical-align: top;">SR<br> </td>
    1838 <td style="vertical-align: top;">2.11<br> </td>
    1839 <td style="vertical-align: top;">N/C<br> </td>
    1840 <td style="vertical-align: top;">New cloud physics code
    1841 implemented, which explicitly simulates single cloud droplets,
    1842 including droplet growth by condensation and collision. Using this code
    1843 requires to set the new inipar-parameter <span style="font-family: monospace;">cloud_droplets</span>
    1844 = .TRUE. and to use the particle package (by using the <span style="font-weight: bold;">mrun</span>-option <span style="font-family: monospace;">-p particles</span>).
    1845 Coupling between droplets and the thermodynamic quantities (potential
    1846 temperature and specific humidity) is regarded in the new subroutine <span style="font-family: monospace;">interaction_droplets_ptq</span>.
    1847 The real number of droplets in a grid cell can steered by the new
    1848 inipar-parameter <span style="font-family: monospace;">initial_weighting_factor</span>.<br>
    1849 <br> <span style="font-weight: bold;">This code
    1850 will be further extended and probably changed in the near future, so
    1851 the current status is that of a test version!</span><br> <br>
    1852 In connection with this new code implementation, several changes has
    1853 been made to the existing code:<br> <br>
    1854 The particle (droplet) size is now given as radius (previously
    1855 diameter). E.g., the name of the respective package parameter <span style="font-family: monospace;">diameter</span> has
    1856 changed to <span style="font-family: monospace;">radius</span>.<br>
    1857 <br>
    1858 The current weighting_factor and radius are stored as additional
    1859 particle attributes in the type structure <span style="font-family: monospace;">particle_type</span>.
    1860 The MPI data type <span style="font-family: monospace;">mpi_particle_type</span>,
    1861 needed for exchanging particles between subdomains, has been changed
    1862 correspondingly.<br> <br> <span style="font-family: monospace;">gas_constant</span> is
    1863 renamed <span style="font-family: monospace;">r_d</span>,
    1864 <span style="font-family: monospace;">latent_heat</span>
    1865 is renamed <span style="font-family: monospace;">r_v</span>,
    1866 the allowed string length of <span style="font-family: monospace;">pl2d</span>
    1867 and <span style="font-family: monospace;">pl3d</span>
    1868 is increased from 6 to 10.<br> <br>
    1869 New 3d arrays <span style="font-family: monospace;">ql_1</span>,
    1870 <span style="font-family: monospace;">ql_2</span>, <span style="font-family: monospace;">ql_v</span> and <span style="font-family: monospace;">ql_vp</span>, <span style="font-family: monospace;">ql</span> is now a
    1871 pointer, new pointer <span style="font-family: monospace;">ql_c</span>.<br>
    1872 <br>
    1873 Data format for unit 85 (particle data output) is changed.</td> <td style="vertical-align: top;">advec_particles.f90
    1874 check_open.f90, header.f90, init_3d_model.f90, init_cloud_physics.f90,
    1875 init_particles.f90, modules.f90, package_parin.f90, parin.f90,
    1876 plot_2d.f90, plot_3d.f90, read_var_list.f90, time_integration.f90,
    1877 write_var_list.f90<br> <br> <span style="font-weight: bold;">new:</span><br>
    1878 interaction_droplets_ptq.f90</td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;">Default value of <span style="font-family: monospace;">call_psolver_at_all_substeps</span>
    1879 is <span style="font-style: italic;">.TRUE.</span>,
    1880 because small scale waves occured with <span style="font-style: italic;">.FALSE.</span></td> <td style="vertical-align: top;">modules.f90</td> </tr>
    1881 <tr> <td style="vertical-align: top;"><br> </td>
    1882 <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">2d- and 3d-NetCDF-files are not
    1883 opened if there is no output for them (<span style="font-family: monospace;">pl2d</span> = <span style="font-family: monospace;">pl3d</span> = <span style="font-style: italic;">' '</span>).<br> <br>
    1884 No opening of units 101 - 108 in case of missing NetCDF support.</td>
    1885 <td style="vertical-align: top;">check_open.f90, netcdf.f90<br>
    1886 </td> </tr> <tr> <td style="vertical-align: top;">30/06/05<br> </td>
    1887 <td style="vertical-align: top;">GS<br> </td>
    1888 <td style="vertical-align: top;">2.11a<br> </td>
    1889 <td style="vertical-align: top;">C<br> </td> <td style="vertical-align: top;">Scalars ug and vg have been
    1890 changed into
    1891 arrays in order to allow the specification of a geostrophic wind that
    1892 depends on height (baroclinicity). The initial profiles of the the
    1893 u- and v-component of the geostrophic wind are initialized by
    1894 specifying the new initialization parameters <span style="font-family: monospace;">ug_surface</span>, <span style="font-family: monospace;">ug_vertical_gradient</span>,
    1895 <span style="font-family: monospace;">ug_vertical_gradient_level</span>
    1896 and <span style="font-family: monospace;">vg_surface</span>,
    1897 <span style="font-family: monospace;">vg_vertical_gradient</span>,
    1898 <span style="font-family: monospace;">vg_vertical_gradient_level</span>,
    1899 respectively. <br> <br>
    1900 The former initialization parameters <span style="font-family: monospace;">ug</span> and <span style="font-family: monospace;">vg</span> have been
    1901 removed. <br> </td> <td style="vertical-align: top;">boundary_conds,
    1902 check_parameters, coriolis, header, init_1d_model, modules, parin,
    1903 prognostic_equations, read_var_list, spline_z, write_var_list<br>
    1904 </td> </tr> <tr> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;"><br> </td> <td style="vertical-align: top;">E<br> </td> <td style="vertical-align: top;">Error in the calculation of u_0
    1905 and
    1906 v_0 in production_e.f90 removed.<br> <br> <span style="font-weight: bold;">Attention:</span> <br>
    1907 The content of the testresult-file (run control output) has changed
    1908 due to this modification.<br> </td> <td style="vertical-align: top;">production_e<br> </td>
    1909 </tr> <tr> <td style="text-align: left; vertical-align: top;">20/10/05</td>
    1910 <td style="vertical-align: top;">SR</td> <td style="vertical-align: top;">2.11b</td> <td style="vertical-align: top;">N/C</td> <td style="vertical-align: top;">Collision process for droplet
    1911 growth completed.<br> <br> <span style="font-weight: bold;">The droplet code is still under
    1912 development and requires further speed optimization!<br> <br>
    1913 </span>Number of particles really used is additionally output on
    1914 the netcdf particle data file.<span style="font-weight: bold;"></span></td>
    1915 <td style="vertical-align: top;">advec_particles, modules,
    1916 netcdf</td> </tr> <tr> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">E</td> <td style="vertical-align: top;">The
    1917 last PE in a row is not allowed to have more grid points than the other
    1918 PES (only less). Jobs crashed in these cases that the last PE has more
    1919 grid points. Therefore, the number of gridpoints along x (and y) must
    1920 now meet a special condition which is checked in case that <span style="font-family: monospace;">grid_matching</span> =
    1921 <span style="font-style: italic;">'match'</span> is
    1922 used.<br> <br>
    1923 Error removed in calculating y axis data for yz cross sections. Error
    1924 in output of netcdf yz-cross-sections removed.<br> <br>
    1925 2*r replaced by r in the exponential term of the particle momentum
    1926 equation.<br>
    1927 Error in output of yz-slice information removed.</td> <td style="vertical-align: top;">advec_particles, header,
    1928 init_pegrid, netcdf, plot_2d</td> </tr> <tr> <td style="vertical-align: top;">06/12/05</td> <td style="vertical-align: top;">SR</td> <td style="vertical-align: top;">2.11c</td> <td style="vertical-align: top;">N</td> <td style="vertical-align: top;">Output of ql profile is allowed
    1929 in case of using cloud droplets.</td> <td style="vertical-align: top;">check_parameters,
    1930 flow_statistics, modules</td> </tr> <tr> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">&nbsp;</td> <td style="vertical-align: top;">E</td> <td style="vertical-align: top;">The horizontally averaged pt
    1931 profile is calculated within<span style="font-family: monospace;">
    1932 buoyancy </span>only
    1933 in case of the first respective intermediate timestep. This is done in
    1934 order to spare communication time and to produce identical model
    1935 results with jobs which are calling<span style="font-family: monospace;"> flow_statistics </span>at
    1936 different time intervals.<br> <br>
    1937 Error in netcdf variable declaration for<span style="font-family: monospace;"> statistic_regions </span>/=
    1938 <span style="font-style: italic;">0</span> removed.</td>
    1939 <td style="vertical-align: top;">buoyancy, netcdf</td>
    1940 </tr><tr><td style="vertical-align: top;">23/02/06</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.0</td><td style="vertical-align: top;">N</td><td><span style="font-weight: bold;">Version for simulating flows over
    1941 topography (buildings, mountains, etc.)</span><br style="font-weight: bold;"><br>Besides
    1942 the implementation of topography, this version contains several other
    1943 improvements. The most important ones are listed here:<br><ul><li>The
    1944 cloud droplet code has been optimized (it now runs about 100 times
    1945 faster than before).</li><li>Output of time-averaged 2d/3d
    1946 data (sections / volume data) is possible.</li><li>Output
    1947 of 2d-section data averaged along the direction normal to this section
    1948 can be done.</li><li>The user-interface has been extended
    1949 in order to allow 2d-/3d-output of user-defined quantities.</li></ul>The
    1950 kind of topography to be used is controlled by the new initialization
    1951 parameter <span style="font-family: monospace;">topography</span>.
    1952 Allowed values are <span style="font-style: italic;">'flat'</span>,
    1953 <span style="font-style: italic;">'single_building'</span>,
    1954 and <span style="font-style: italic;">'read_from_file'</span>.
    1955 The user can define his own special topography setting within the new
    1956 user-interface routine <span style="font-family: monospace;">user_init_grid</span>.
    1957 For the single building case, the&nbsp;building (rectangular) size
    1958 and position can be controlled with parameters <span style="font-family: monospace;">building_height</span>,
    1959 <span style="font-family: monospace;">building_length_x</span>,
    1960 <span style="font-family: monospace;">building_length_y</span>,
    1961 <span style="font-family: monospace;">building_wall_left</span>,
    1962 and <span style="font-family: monospace;">building_wall_south</span>.<br>
    1963 <br>
    1964 The topography code is already optimized (vectorized) for use on the
    1965 NEC-SX6.<br><br>Output of time-averaged 2d-/3d-data can be
    1966 enabled by appending the string <span style="font-style: italic;">'_av'</span>
    1967 to the respective output quantities given with the new
    1968 runtime-parameter <span style="font-family: monospace;">data_output</span>
    1969 (see further below for the (name)changes in the parameters for data
    1970 output). Example: if a time-average of the vertical cross-section of
    1971 potential temperature is required, the user has to set <span style="font-family: monospace;">data_output</span> = <span style="font-style: italic;">'pt_xy_av'</span>.
    1972 In case of NetCDF-output, the time-averaged data is output to
    1973 additional files (seperate from the non-averaged output). The length of
    1974 the averaging interval and the temporal distance of the single
    1975 instantaneous sections (volumes) entering into this averaging is
    1976 controlled by the new runtime-parameters <span style="font-family: monospace;">averaging_interval</span>and
    1977 <span style="font-family: monospace;">dt_averaging_input</span>.
    1978 <br><br>An average normal to the direction of a
    1979 cross-section can be output by setting the respective cross section
    1980 index to <span style="font-style: italic;">-1</span>
    1981 (example: <span style="font-family: monospace;">section_xz</span>
    1982 = <span style="font-style: italic;">-1</span>).<br><br>New
    1983 user-interface routines allowing the output of user-defined quantities
    1984 are <span style="font-family: monospace;">user_check_data_output</span>,
    1985 <span style="font-family: monospace;">user_define_netcdf_grid</span>,
    1986 <span style="font-family: monospace;">user_data_output_2d</span>,
    1987 <span style="font-family: monospace;">user_data_output_3d</span>,
    1988 and <span style="font-family: monospace;">user_3d_data_averaging</span>.
    1989 These quantities can be calculated using the new <span style="font-family: monospace;">CASE</span>-Entry <span style="font-style: italic;">'after integration'</span>
    1990 in the user-interface routine <span style="font-family: monospace;">user_actions</span>.<br><br>Optimization
    1991 of the cloud droplet code is mainly done by re-sorting all particles
    1992 after every timestep in a way that now all particles which belong to
    1993 the same grid-box (k,j,i) are stored consecutively (wthout any strides)
    1994 in memory.<br> <br>
    1995 Code adaptation for the IBM at the department of atmospheric sciences,
    1996 Yonsei university (ibmy). Affected subroutines: <span style="font-family: monospace;">fft_xy</span>, <span style="font-family: monospace;">netcdf</span>, <br><br><span style="font-weight: bold;">Further new features:</span><br><ul><li>Use
    1997 of particle tails now requires setting of the new package-parameter <span style="font-family: monospace;">use_particle_tails</span>.
    1998 The new parameter skip_particles_for_tail allows only every <span style="font-family: monospace;">skip_particle_for_tail</span>'th
    1999 parameter having a tail.</li><li>Initialization-parameter <span style="font-family: monospace;">e_min</span> can be
    2000 used to set a lower limit for the subgrid-scale TKE (i.e. to guarantee
    2001 a lower limit for the flow's Reynolds-number).</li><li>A
    2002 conservation of the volume flow (through the complete xz- and
    2003 yz-sections &nbsp;of the total domain) can be enforced by the new
    2004 initialization-parameter <span style="font-family: monospace;">conserve_volume_flow</span>.</li><li>Data
    2005 output can be skipped for a given time interval from simulation start
    2006 (t=0) using new runtime-parameters <span style="font-family: monospace;">skip_time_dopr</span>,
    2007 <span style="font-family: monospace;">skip_time_dosp</span>,
    2008 <span style="font-family: monospace;">skip_time_do2d_xy</span>,
    2009 <span style="font-family: monospace;">skip_time_do2d_xz</span>,
    2010 <span style="font-family: monospace;">skip_time_do2d_yz</span>,
    2011 and <span style="font-family: monospace;">skip_time_do3d</span>.<br>
    2012 </li><li>By default, NetCDF output is now using 64-bit
    2013 offset format
    2014 (large file support) on most machines. The user can switch to the
    2015 32-bit offset format with the new runtime-parameter <span style="font-family: monospace;">netcdf_64bit</span>.
    2016 Units 111:113&nbsp; and 116 are opened for NetCDF output of
    2017 time-averaged 2d-3d data.<br> </li> <li>Data
    2018 logging routines are added (see file data_log.f90), which can be used
    2019 for debugging purposes. Output is done on unit 20 (local file
    2020 name/directory name DATA_LOG).</li> <li>New routine <span style="font-family: monospace;">exchange_horiz_2d_int</span>
    2021 for&nbsp; ghostpoint exchange of 2d-integer arrays. Routine <span style="font-family: monospace;">exchange_horiz_2d</span>
    2022 is extended for non-cyclic boundary conditions in the non-parallel case.</li>
    2023 <li>Two different methods for calculating the mixing length and
    2024 the dissipation can be used in the 1d-model. These are steered by the
    2025 new initializing-parameters <span style="font-family: monospace;">dissipation_1d</span>
    2026 and <span style="font-family: monospace;">mixing_length_1d</span>.<br>
    2027 </li>
    2028 </ul></td><td style="vertical-align: top;">advec_particles,
    2029 advec_s_pw,
    2030 advec_s_up, advec_u_pw, advec_u_up, advec_v_pw, advec_v_up, advec_w_pw,
    2031 advec_w_up, boundary_conds, buoyancy, check_open, check_parameters,
    2032 close_file, coriolis, diffusion_e, diffusion_s, diffusion_u,
    2033 diffusion_v, diffusion_w, diffusivities, disturb_field,
    2034 disturb_heatflux, exchange_horiz_2d, exchange_horiz, flow_statistics,
    2035 header, init_1d_model, init_3d_model, init_grid, init_particles,
    2036 init_pegrid, modules, netcdf, package_parin, parin, poisfft,
    2037 prandtl_fluxes, pres, production_e, prognostic_equations,
    2038 read_3d_binary, read_var_list, run_control, time_integration,
    2039 user_interface, write_3d_binary, write_var_list<br> <br> <span style="font-weight: bold;">new:</span><br>
    2040 average_3d_data, data_log, sum_up_3d_data<br> <br> <span style="font-weight: bold;">renamed:<br> </span>plot_dvrp
    2041 -&gt; data_output_dvrp<br>
    2042 plot_spectra -&gt; data_output_spectra<br>
    2043 plot_ts -&gt; data_output_tseries<br>
    2044 plot_1d -&gt; data_output_profiles<br> <span style="font-weight: bold;"></span>plot_2d -&gt;
    2045 data_output_2d<br>
    2046 plot_3d -&gt; data_output_3d<br>
    2047 </td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td style="vertical-align: top;">C</td><td>In
    2048 parallel mode, all PEs are opening the same copy of the
    2049 NAMELIST-parameter file <span style="font-family: monospace;">PARIN</span>,
    2050 i.e. from now on, the file attribute "<span style="font-family: monospace;">npe</span>" must be
    2051 removed from the corresponding file connection statements in the <span style="font-weight: bold;">mrun</span> configuration
    2052 file (.mrun.config).<br><br>A
    2053 large number of parameter names and local filenames have been changed
    2054 (see&nbsp;list below). Most of them are parameters concerning data
    2055 output (do). The former denotations "plot" and "pl" have been changed
    2056 to "data_output" and "do", respectively. In addition to these changes,
    2057 the names of many internal PALM parameters and variables have also
    2058 changed.<br><br>Restart runs now require setting of the
    2059 initialization-parameter <span style="font-family: monospace;">initializing_actions</span>
    2060 = <span style="font-style: italic;">'read_restart_data'</span>.<br>
    2061 <br>
    2062 Concerning particles, the parameters <span style="font-family: monospace;">psl</span>, <span style="font-family: monospace;">psr</span>, <span style="font-family: monospace;">pdx</span>,
    2063 etc., which are controlling the position of the particle source and the
    2064 number of particles within this source, are now 1d-arrays. This allows
    2065 to define different particle sources for different particle groups.<br>
    2066 <br>
    2067 The number of particle groups has to be set by the user (no automatic
    2068 calculation from the value of parameter <span style="font-family: monospace;">density_ratio</span>
    2069 any more)<span style="font-style: italic;"></span>.
    2070 Variable <span style="font-family: monospace;">idum</span>
    2071 in type <span style="font-family: monospace;">particle_type</span>
    2072 has been renamed <span style="font-family: monospace;">tail_id</span>.<br><br>Output
    2073 for units 15 and 17 flushed in <span style="font-family: monospace;">init_1d_model</span>.<br><br>List
    2074 of changed parameter names:<br><table style="text-align: left; width: 559px; height: 831px;" border="1" cellpadding="2" cellspacing="2"><tbody><tr><td style="font-weight: bold;" align="undefined" valign="undefined">Old name</td><td align="undefined" valign="undefined"><span style="font-weight: bold;">New name</span></td><td align="undefined" valign="undefined"><span style="font-weight: bold;">Comments</span></td></tr><tr><td align="undefined" valign="undefined">average_period_pl1d</td><td align="undefined" valign="undefined">averaging_interval_pr</td><td align="undefined" valign="undefined"><br>
    2075 </td></tr><tr><td style="vertical-align: top;">average_period_pr1d</td><td style="vertical-align: top;">---</td><td style="vertical-align: top;">averaging of printed profiles
    2076 is not possible any more</td></tr><tr><td align="undefined" valign="undefined">average_period_sp</td><td align="undefined" valign="undefined">averaging_interval_sp</td><td align="undefined" valign="undefined"><br>
    2077 </td></tr><tr><td align="undefined" valign="undefined">dt_average</td><td align="undefined" valign="undefined">dt_averaging_input_pr</td><td align="undefined" valign="undefined"><br>
    2078 </td></tr><tr><td align="undefined" valign="undefined">dt_pl1d</td><td align="undefined" valign="undefined">dt_dopr</td><td align="undefined" valign="undefined"><br>
    2079 </td></tr><tr><td align="undefined" valign="undefined">dt_plsp</td><td align="undefined" valign="undefined">dt_dosp</td><td align="undefined" valign="undefined"><br>
    2080 </td></tr><tr><td>dt_plts</td><td>dt_dots</td><td><br>
    2081 </td></tr><tr><td align="undefined" valign="undefined">dt_pr1d</td><td align="undefined" valign="undefined">dt_dopr_listing</td><td align="undefined" valign="undefined"><br>
    2082 </td></tr><tr><td align="undefined" valign="undefined">dt_pl2d_xy</td><td align="undefined" valign="undefined">dt_do2d_xy</td><td align="undefined" valign="undefined"><br>
    2083 </td></tr><tr><td align="undefined" valign="undefined">dt_pl2d_xz</td><td align="undefined" valign="undefined">dt_do2d_xz</td><td align="undefined" valign="undefined"><br>
    2084 </td></tr><tr><td align="undefined" valign="undefined">dt_pl2d_yz</td><td align="undefined" valign="undefined">dt_do2d_yz</td><td align="undefined" valign="undefined"><br>
    2085 </td></tr><tr><td align="undefined" valign="undefined">ebene_xy</td><td align="undefined" valign="undefined">section_xy</td><td align="undefined" valign="undefined"><br>
    2086 </td></tr><tr><td align="undefined" valign="undefined">ebene_xz</td><td align="undefined" valign="undefined">section_xz</td><td align="undefined" valign="undefined"><br>
    2087 </td></tr><tr><td align="undefined" valign="undefined">ebene_yz</td><td align="undefined" valign="undefined">section_yz</td><td align="undefined" valign="undefined"><br>
    2088 </td></tr><tr><td align="undefined" valign="undefined">nz_plot3d</td><td align="undefined" valign="undefined">nz_do3d</td><td align="undefined" valign="undefined"><br>
    2089 </td></tr><tr><td align="undefined" valign="undefined">plts</td><td align="undefined" valign="undefined">data_output_ts</td><td align="undefined" valign="undefined"><br>
    2090 </td></tr><tr><td align="undefined" valign="undefined">pl1d</td><td align="undefined" valign="undefined">data_output_pr</td><td align="undefined" valign="undefined"><br>
    2091 </td></tr><tr><td style="vertical-align: top;">pl2d</td><td style="vertical-align: top;">data_output</td><td style="vertical-align: top;">old parameters pl2d and pl3d
    2092 are joined to new parameter data_output</td></tr><tr><td align="undefined" valign="undefined">pl3d</td><td align="undefined" valign="undefined">data_output</td><td align="undefined" valign="undefined"><br>
    2093 </td></tr><tr><td align="undefined" valign="undefined">pl2d_at_begin</td><td align="undefined" valign="undefined">do2d_at_begin</td><td align="undefined" valign="undefined"><br>
    2094 </td></tr><tr><td align="undefined" valign="undefined">pl3d_at_begin</td><td align="undefined" valign="undefined">do3d_at_begin</td><td align="undefined" valign="undefined"><br>
    2095 </td></tr><tr><td align="undefined" valign="undefined">pl3d_compress</td><td align="undefined" valign="undefined">do3d_compress</td><td align="undefined" valign="undefined"><br>
    2096 </td></tr><tr><td align="undefined" valign="undefined">pl3d_precision</td><td align="undefined" valign="undefined">do3d_comp_prec</td><td align="undefined" valign="undefined"><br>
    2097 </td></tr><tr><td>pl_spectra</td><td>data_output_sp</td><td><br>
    2098 </td></tr><tr><td align="undefined" valign="undefined">read_fields_from_prior_run</td><td align="undefined" valign="undefined">read_restart_data</td><td align="undefined" valign="undefined"><br>
    2099 </td></tr><tr><td align="undefined" valign="undefined">write_plot2d_on_each_pe</td><td align="undefined" valign="undefined">data_output_2d_on_each_pe</td><td align="undefined" valign="undefined"><br>
    2100 </td></tr><tr><td align="undefined" valign="undefined">z_max_pl1d</td><td align="undefined" valign="undefined">z_max_do1d</td><td align="undefined" valign="undefined"><br>
    2101 </td></tr><tr><td align="undefined" valign="undefined">z_max_pl2d</td><td align="undefined" valign="undefined">z_max_do2d</td><td align="undefined" valign="undefined"><br>
    2102 </td></tr></tbody></table></td><td style="vertical-align: top;">advec_particles,
    2103 advec_s_bc, check_parameters, check_open, close_file,
    2104 data_output_dvrp,&nbsp; data_output_profiles, data_output_tseries,
    2105 data_output_2d, data_output_3d, flow_statistics, header, init_1d_model,
    2106 init_3d_model, init_dvrp, init_particles, init_pegrid, init_slope,
    2107 modules, netcdf, package_parin, palm, parin, print_1d, read_var_list,
    2108 run_control, time_integration, timestep, write_compressed,
    2109 write_var_list<br>
    2110 </td></tr><tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td style="vertical-align: top;">E</td><td>Error in
    2111 the particle release (defaults of <span style="font-family: monospace;">psl</span>, <span style="font-family: monospace;">psr</span>, <span style="font-family: monospace;">psn</span>, <span style="font-family: monospace;">pss</span>) at the PE
    2112 boundary has been fixed.<br> <br>
    2113 Error removed getting the variable ids for <span style="font-family: monospace;">_ext</span> for
    2114 profiles and time series.<br><br>NetCDF calls in <span style="font-family: monospace;">data_output_tseries</span>
    2115 only if NetCDF output is switched on.<br><br>Output of the
    2116 initial geostrophic wind profile corrected.<br><br>Maximum
    2117 possibel timestep for Runge-Kutta-schemes reduced, error concerning
    2118 initialization of&nbsp; <span style="font-family: monospace;">l_black</span>
    2119 removed (both in <span style="font-family: monospace;">init_1d_model</span>).<br>
    2120 </td><td style="vertical-align: top;">advec_particles,
    2121 data_output_tseries, header, init_particles, init_1d_model, netcdf<br>
    2122 </td></tr><tr><td align="left" valign="top">26/04/06</td><td align="left" valign="top">SR</td><td align="left" valign="top">3.0a</td><td align="left" valign="top">N</td><td align="left" valign="top">OpenMP parallelization for
    2123 the cache-optimized PALM code.<br><br>OpenMP
    2124 directives have been added where necessary. Still further tuning will
    2125 be necessary to get optimum performance. Other parts of the code than
    2126 the cache-optimized code still need to be (OpenMP-) parallelized. <br><br>So
    2127 far, threads are activated by setting the <span style="font-weight: bold;">mrun</span>-options <span style="font-family: monospace;">-T</span> <span style="font-style: italic;">&lt;number_of_threads&gt;</span>
    2128 and <span style="font-family: monospace;">-O</span>,
    2129 i.e. when the Option <span style="font-family: monospace;">-O</span>
    2130 is given, the <span style="font-family: monospace;">-T</span>
    2131 argument is interpreted as the number of threads to be used. When <span style="font-family: monospace;">-O</span> is given,
    2132 the number of MPI tasks per node is automatically set to <span style="font-style: italic;">1</span>.<br><br>Beside
    2133 the additional compiler directives, the main code change required by
    2134 the OpenMP parallelization is that global sums are now calculated by
    2135 first calculating local sums on each thread. As the next step, local
    2136 sums are calculated from these thread sums for each MPI task before the
    2137 global sum is computed via MPI_ALLREDUCE.&nbsp; For storing the
    2138 thread
    2139 sums, arrays sums_l and sums_l_l now have three dimensions where the
    2140 number of elements of the third dimension is equal to the number of
    2141 OpenMP threads.</td><td align="left" valign="top">buoyancy,
    2142 cpu_statistics, diffusivities, flow_statistics, header, init_pegrid,
    2143 init_3d_model, modules, prandtl_fluxes, pres, production_e</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">ML</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">C</td><td align="left" valign="top">Provisional
    2144 correction for Piacsek &amp; Williams advection scheme: keep u and
    2145 v
    2146 zero one layer below the topography (in case of set_1d-model_profiles).</td><td align="left" valign="top">init_3d_model</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">SR/ML</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">E</td><td align="left" valign="top">In <span style="font-family: monospace;">flow_statistics.f90</span>
    2147 nzb_s_inner(j,i) replaced by nzb in determination of z_i.<br><br>Errors
    2148 removed in the computation of the diabatic mixing length (<span style="font-family: monospace;">init_1d_model.f90</span>).<br><br>Error
    2149 removed in extend mode when checking whether the selected cross
    2150 sections match those in the already existing NetCDF file (<span style="font-family: monospace;">netcdf.f90</span>).</td><td align="left" valign="top">flow_statistics,
    2151 init_1d_model, netcdf</td></tr><tr><td align="left" valign="top">02/06/06</td><td align="left" valign="top">SR</td><td align="left" valign="top">3.0b</td><td align="left" valign="top">N</td><td align="left" valign="top">This version is adapted to the Sun Fire X4600
    2152 system at TIT (to be used by setting the <span style="font-weight: bold;">mrun</span> option <span style="font-family: monospace;">-h lctit</span>).</td><td align="left" valign="top">cpu_log, init_1d_model,
    2153 local_tremain, locaö_tremain_ini, run_control</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">C</td><td align="left" valign="top">NetCDF&nbsp;2d-
    2154 and 3d-datasets now contain the exact coordinates of the variables
    2155 along x and y with respect to the positions where they are defined on
    2156 the staggered grid.<br><br>NetCDF datasets of cross
    2157 sections (e.g. <span style="font-family: monospace;">DATA_2D_XY_NETCDF</span>)
    2158 are only opened if the respective cross sections are really requested
    2159 by the settings of parameter <span style="font-family: monospace;">data_output</span>.</td><td align="left" valign="top">check_parameters,
    2160 data_output_2d, data_output_3d, modules, netcdf, user_interface</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">E</td><td align="left" valign="top">p is assigned to <span style="font-family: monospace;">to_be_resorted</span>
    2161 instead of w</td><td align="left" valign="top">data_output_2d</td></tr><tr><td align="left" valign="top">04/08/06</td><td align="left" valign="top">SR</td><td align="left" valign="top">3.1</td><td align="left" valign="top">N</td><td align="left" valign="top">Subgrid
    2162 scale velocities can (optionally) be included for calculating the
    2163 particle advection, using the method of Weil et al. (2004, JAS, 61,
    2164 2877-2887). This method is switched on by the new particle package
    2165 parameter <span style="font-family: monospace;">use_sgs_for_particles</span>.
    2166 This also forces the Euler/upstream method to be used for time
    2167 advancement of the TKE (see new parameter <span style="font-family: monospace;">use_upstream_for_tke</span>).
    2168 The minimum timestep during the sub-timesteps is controlled by
    2169 parameter <span style="font-family: monospace;">dt_min_part</span>.
    2170 The data type <span style="font-family: monospace;">particle_type</span>
    2171 has additional new attributes <span style="font-family: monospace;">e_m</span>,
    2172 <span style="font-family: monospace;">dt_sum</span>,
    2173 and <span style="font-family: monospace;">speed_x/y/z_sgs</span>.<br><br>Other
    2174 new particle features: output of particle quantities as timeseries in
    2175 NetCDF format (on local file <span style="font-family: monospace;">DATA_1D_PTS_NETCDF</span>).
    2176 The output time interval is controlled by parameter <span style="font-family: monospace;">dt_dopts</span>.
    2177 Particle advection can be switched off after some time using parameter <span style="font-family: monospace;">end_time_prel</span>.
    2178 More than one particle per point can be started with parameter <span style="font-family: monospace;">particles_per_point</span>.<br><br>Additional
    2179 parameter in function <span style="font-family: monospace;">random_gauss</span>
    2180 which limits the range of the created random numbers to five times the
    2181 standard deviation (=1). Seeds <span style="font-family: monospace;">iran</span>
    2182 and <span style="font-family: monospace;">iran_part</span>
    2183 are stored for restart runs.</td><td align="left" valign="top">advec_particles,
    2184 check_open, check_parameters, close_file, diffusion_e,
    2185 disturb_heatflux, header, init_3d_model, init_particles, modules,
    2186 netcdf, package_parin, parin, prognostic_equations, random_gauss,
    2187 read_3d_binary, read_var_list, time_integration, write_3d_binary,
    2188 write_var_list<br><br><span style="font-weight: bold;">new:</span><br>data_output_ptseries</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">C</td><td align="left" valign="top">Call of subroutine <span style="font-family: monospace;">header</span> is moved
    2189 after call of subroutine <span style="font-family: monospace;">init_3d_model</span>.
    2190 Generation of <span style="font-family: monospace;">run_description_header</span>
    2191 is moved from routines <span style="font-family: monospace;">palm</span>
    2192 and <span style="font-family: monospace;">header</span>
    2193 to <span style="font-family: monospace;">check_parameters</span>.
    2194 Determination of the number of particle groups is moved from <span style="font-family: monospace;">header</span> to <span style="font-family: monospace;">init_particles</span>.<br><br><span style="font-family: monospace;">izuf</span> renamed <span style="font-family: monospace;">iran</span>.</td><td align="left" valign="top">check_parameters,
    2195 disturb_field, disturb_heatflux, header, init_particles, modules, palm</td></tr><tr><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">&nbsp;</td><td align="left" valign="top">E</td><td align="left" valign="top">Variables
    2196 do2d_unit and do3d_unit now defined as 2d-arrays. Before, in some
    2197 cases, the units of variables in the 2d- and 3d-NetCDF-files have been
    2198 wrong.<br><br>In routine <span style="font-family: monospace;">poisfft</span> default
    2199 setting of the thread number tn in case of not using OpenMP.<br><br>Error
    2200 removed in the non-parallel part of routine <span style="font-family: monospace;">flow_statistics</span>
    2201 (number of arguments of array <span style="font-family: monospace;">sums_l</span>).<br><br>Error
    2202 removed which appeared if the user had decreased the value of <span style="font-family: monospace;">dt_dopr</span> within
    2203 a job chain and if simulataneous time averaging of profiles was
    2204 switched on.</td><td align="left" valign="top">check_parameters,
    2205 data_output_profiles, flow_statistics, modules, netcdf, poisfft</td></tr><tr><td style="vertical-align: top;">22/08/06</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.1a</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">In case of more than one
    2206 particle group, seperate output of timeseries for each of the groups.<br><br>New
    2207 initial parameter <span style="font-family: monospace;">dz_max</span>,
    2208 which limits the vertical gridspacing in case of a vertically stretched
    2209 grid.</td><td style="vertical-align: top;">data_output_ptseries,
    2210 header, init_grid, modules, netcdf, parin, read_var_list, write_var_list</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Disturbances are imposed only
    2211 for the last Runge-Kutta-substep. <br><span style="font-weight: bold;">Attention:</span> <br>
    2212 The content of the testresult-file (run control output) has changed
    2213 due to this modification.<br><br>Output of xz and yz cross
    2214 sections now up to gridpoint nzt+1.<br><br>Default settings
    2215 of particle start positions changed.</td><td style="vertical-align: top;">check_open, close_file,
    2216 data_output_2d, init_particles, netcdf, time_integration</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Initialisation of all tendency
    2217 arrays (t.._m) needed for the Runge-Kutta schemes.<br><br>Bugfix
    2218 in index array initialization for line- or point-like topography
    2219 structures.<br><br>Bugfix: yv coordinates are now used for
    2220 yz cross sections, where neccessary.</td><td style="vertical-align: top;">init_3d_model, init_grid, netcdf</td></tr><tr><td style="vertical-align: top;">12/02/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.1b</td><td style="vertical-align: top;">&nbsp;N</td><td style="vertical-align: top;"><span style="font-weight: bold;">Attention:</span><br>This
    2221 is the last revision before switching to the subversion revison control
    2222 system!<br><br>Informative output to the job protocoll in
    2223 case of restarts.</td><td style="vertical-align: top;">check_for_restart</td></tr><tr><td>&nbsp;&nbsp;</td><td>&nbsp;&nbsp;</td><td>&nbsp;&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Values of environment variables
    2224 are now read from local file <span style="font-family: monospace;">ENVPAR</span>
    2225 instead of getting them by a system call.<br><br>For
    2226 interpolation in <span style="font-family: monospace;">advec_particles</span>,
    2227 allways level k is used.</td><td style="vertical-align: top;">advec_particles,
    2228 local_tremain_ini, parin</td></tr><tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Several bugfixes in <span style="font-family: monospace;">advec_particles</span>:
    2229 new particles are released only if <span style="font-family: monospace;">end_time_prel</span>
    2230 &gt; <span style="font-family: monospace;">simulated_time</span>,&nbsp;transfer
    2231 of particles when x &lt; -0.5*dx (0.0 before), etc., index i,j used
    2232 instead of cartesian (x,y) coordinate to check for transfer because
    2233 this failed under very rare conditions, calculation of number of
    2234 particles with same radius as the current particle (cloud droplet code).<br><br>Allocation
    2235 of <span style="font-family: monospace;">tail_mask</span>
    2236 and <span style="font-family: monospace;">new_tail_id</span>
    2237 in case of restart-runs. "__" added in a cpp-directive. (both <span style="font-family: monospace;">init_particles</span>)</td><td style="vertical-align: top;">advec_particles, init_particles</td></tr><tr><td style="vertical-align: top;">02/03/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.1c</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">A heatflux can be prescribed at
    2238 the top with new inipar parameters <span style="font-family: monospace;">top_heatflux</span>
    2239 and <span style="font-family: monospace;">use_top_fluxes</span>.
    2240 New 2d-arrays <span style="font-family: monospace;">qswst</span>,
    2241 <span style="font-family: monospace;">qswst_m</span>,
    2242 <span style="font-family: monospace;">tswst</span>
    2243 and <span style="font-family: monospace;">tswst_m</span>
    2244 are used to store this flux. Use of fluxes are controlled with new
    2245 index variable <span style="font-family: monospace;">nzt_diff</span>.
    2246 A Neumann boundary condition for temperature can be applied under these
    2247 conditions.<br><br>Additionally, a Dirichlet condition for
    2248 temperature can be used at the top.<br><br><span style="font-weight: bold;">Attention:</span> <br>
    2249 The content of the testresult-file (run control output) has changed
    2250 due to this modification.</td><td style="vertical-align: top;">check_parameters,
    2251 diffusion_s, flow_statistics, header, init_grid, init_3d_model,
    2252 modules, parin, production_e, prognostic_equations, read_var_list,
    2253 read_3d_binary, swap_timelevel, write_var_list, write_3d_binary</td></tr><tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Prognostic equations for all
    2254 scalars are now solved up to gridpoint nzt (formerly nzt-1).
    2255 Boundary conditions for scalars at top adjusted respectively (now
    2256 applied only at nzt+1).<br><br>The
    2257 default top boundary condition for temperature has been renamed to <span style="font-style: italic;">'initial_gradient'</span>.<br><br>Calls
    2258 of dvrp_output_local,
    2259 which were commented out for a long time, are now activated for all
    2260 streams.</td><td style="vertical-align: top;">advec_s_pw,
    2261 boundary_conds, calc_precipitation, check_parameters, diffusion_e,
    2262 diffusion_s, impact_of_latent_heat, init_dvrp, init_pt_anomaly,
    2263 modules, production_e, prognostic_equations, spline_z</td></tr><tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: 3d-array p is not a
    2264 pointer any more.<br><br>Bugfix in init_particles:
    2265 MPI_REAL
    2266 argument in MPI_ALLREDUCE
    2267 replaced by<br>MPI_INTEGER
    2268 (caused error on NEC only).<br><br>Bugfix:&nbsp; ddzw now
    2269 dimensioned 1:nzt"+1".</td><td style="vertical-align: top;">diffusion_e, diffusion_s,
    2270 diffusion_u, diffusion_v, diffusion_w, init_particles, modules</td></tr><tr><td style="vertical-align: top;">29/03/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.2</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">The code, including scripts, utility programs and documentation is now under full control of <span style="font-family: Courier New,Courier,monospace;">subversion</span>. This revision includes a quite large number of new features, changes and bugfixes.<br>&nbsp;<br>Particle reflection from vertical walls implemented. The particle SGS model is also adjusted to these vertical walls.<br><br>Wall functions for vertical walls now include diabatic conditions. New subroutines <span style="font-family: Courier New,Courier,monospace;">wall_fluxes</span>, <span style="font-family: Courier New,Courier,monospace;">wall_fluxes_e</span>. New 4D-array <span style="font-family: Courier New,Courier,monospace;">rif_wall</span>.<br><br>Calculation/output of precipitation amount, precipitation rate and z0 (by setting "<span style="font-style: italic;">pra*</span>", "<span style="font-style: italic;">prr*</span>", "<span style="font-style: italic;">z0*</span>" with <span style="font-family: Courier New,Courier,monospace;">data_output</span>). The time interval on which the precipitation amount is defined is set by new d3par-parameter <span style="font-family: Courier New,Courier,monospace;">precipitation_amount_interval</span>.<br><br>New inipar-parameter <span style="font-family: Courier New,Courier,monospace;">loop_optimization</span> to control the loop optimization method.<br><br>New
    2271 inipar-parameter <span style="font-family: Courier New,Courier,monospace;">pt_reference</span>. If given, this value is used as the
    2272 reference that is used in the buoyancy terms (otherwise, the instantaneous
    2273 horizontally averaged temperature is used).<br><br>New d3par-parameter <span style="font-family: Courier New,Courier,monospace;">netcdf_64bit_3d</span>
    2274 to switch on and especially to switch off 64bit offset&nbsp;for 3D
    2275 files only (because still some pd-software is unable to handle 64bit
    2276 offset).<br><br>New d3par-parameter <span style="font-family: Courier New,Courier,monospace;">dt_max</span> to set the maximum&nbsp;value allowed for the&nbsp;timestep. <br><br>New user interfaces <span style="font-family: Courier New,Courier,monospace;">user_advec_particles</span> and <span style="font-family: Courier New,Courier,monospace;">user_init_3d_model</span>. The new initializing action "<span style="font-style: italic;">by_user</span>" calls <span style="font-family: Courier New,Courier,monospace;">user_init_3d_model</span> and allows the initial setting of all 3d arrays under complete user control.<br><br>Samples added to the user interface which show how to add user-define time series quantities.<br><br>Topography height informations are stored on arrays <span style="font-family: Courier New,Courier,monospace;">zu_s_inner</span> and <span style="font-family: Courier New,Courier,monospace;">zw_w_inner</span> and output to the 2d/3d NetCDF files.<br><br>Unit 9 is generally opened for output of debug informations (file <span style="font-family: Courier New,Courier,monospace;">DEBUG_&lt;pe#&gt;</span>).</td><td style="vertical-align: top;">Makefile<br><br>advec_particles,
    2277 average_3d_data, buoyancy, calc_precipitation, check_open,
    2278 check_parameters, data_output_2d, diffusion_e, diffusion_u,
    2279 diffusion_v, diffusion_w, diffusivities, header, impact_of_latent_heat,
    2280 init_particles, init_3d_model, modules, netcdf, parin, production_e,
    2281 read_var_list, read_3d_binary, sum_up_3d_data, user_interface,
    2282 write_var_list, write_3d_binary<br><br><span style="font-weight: bold;">new:</span><br>wall_fluxes<br></td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">General revision of non-cyclic horizontal boundary conditions:<br>Radiation boundary conditions are now used instead of Neumann conditions at the outflow (calculation needs velocity values for <span style="font-family: Courier New,Courier,monospace;">t-dt</span>, which are stored on new arrays <span style="font-family: Courier New,Courier,monospace;">u_m_l</span>, <span style="font-family: Courier New,Courier,monospace;">u_m_r</span>, etc.). The calculation of a mean outflow is not needed any more. Volume flow control is added for the outflow boundary (<span style="font-weight: bold;">currently only for the north boundary!!</span>). Additional gridpoints along x and y (<span style="font-family: Courier New,Courier,monospace;">uxrp</span>, <span style="font-family: Courier New,Courier,monospace;">vynp</span>) are not needed any more and removed from the code. Routine "<span style="font-family: Courier New,Courier,monospace;">boundary_conds</span>" now operates on timelevel <span style="font-family: Courier New,Courier,monospace;">t+dt</span> and is not split in two parts (<span style="font-style: italic;">main</span>, <span style="font-style: italic;">uvw_outflow</span>) any more. Neumann boundary conditions are used at inflow/outflow in case of non-cyclic boundary conditions <span style="font-weight: bold;">for all 2d-arrays</span> that are handled by <span style="font-family: Courier New,Courier,monospace;">exchange_horiz_2d</span>.<br><span style="font-weight: bold;">Attention:&nbsp;the
    2283 non-cyclic boundary conditions of this revision still contain some bugs
    2284 which will be removed within the next revisions!</span><br><br>The Bott-Chlond-scheme can now be used in the vectorization-optimized part (NEC, etc.). Equations are solved up to gridpoint <span style="font-family: Courier New,Courier,monospace;">nzt</span>.<br><br>The
    2285 FFT-method for solving the Poisson-equation is now working with Neumann
    2286 boundary conditions both at the bottom and the top. This requires
    2287 adjustments of the tridiagonal coefficients and subtracting the
    2288 horizontally averaged mean from the vertical velocity field.<br><br>Particles-package is now part of the default code ("<span style="font-family: Courier New,Courier,monospace;">-p particles</span>" is not needed as an <span style="font-weight: bold;">mrun</span>-option any more). New attribute <span style="font-family: Courier New,Courier,monospace;">age_m</span> in <span style="font-family: Courier New,Courier,monospace;">particle_type</span>.<br><br>Move call of <span style="font-family: Courier New,Courier,monospace;">user_actions</span>( '<span style="font-style: italic;">after_integration</span>' ) below the increments of times<br>and counters. <span style="font-family: Courier New,Courier,monospace;">user_actions</span> is now called for each statistic region and has as an argument the number of the respective region (<span style="font-family: Courier New,Courier,monospace;">sr</span>).<br><br>d3par-parameter <span style="font-family: Courier New,Courier,monospace;">data_output_ts</span> is removed. Timeseries output for <span style="font-weight: bold;">profil</span>-software removed. Timeseries are now switched on by setting <span style="font-family: Courier New,Courier,monospace;">dt_dots</span>. Timeseries data is collected in <span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>.<br><br>Initial velocities at <span style="font-family: Courier New,Courier,monospace;">nzb+1</span>
    2289 are regarded for volume flow control in case they have been set zero
    2290 before (to avoid small timesteps); see new internal parameters <span style="font-family: Courier New,Courier,monospace;">u/v_nzb_p1_for_vfc</span>.<br><br><span style="font-family: Courier New,Courier,monospace;">q</span> is not allowed any more to become negative (<span style="font-family: Courier New,Courier,monospace;">prognostic_equations</span>).<br><br><span style="font-family: Courier New,Courier,monospace;">poisfft_init</span> is only called if the fft-solver is switched on (<span style="font-family: Courier New,Courier,monospace;">init_pegrid</span>).<br><br>d3par-parameter <span style="font-family: Courier New,Courier,monospace;">moisture</span> renamed to <span style="font-family: Courier New,Courier,monospace;">humidity</span>.<br><br>Subversion global revision number is read from <span style="font-weight: bold;">mrun</span> and added to the run description header and to the run control (<span style="font-family: Courier New,Courier,monospace;">_rc</span>) file.<br><br><span style="font-family: Courier New,Courier,monospace;">__vtk</span> directives removed from main program.<br><br>The uitility routine&nbsp;<span style="font-family: Courier New,Courier,monospace;">interpret_config</span> now reads PALM environment variables from <span style="font-family: Courier New,Courier,monospace;">NAMELIST</span> instead using the system call <span style="font-family: Courier New,Courier,monospace;">GETENV</span>.</td><td style="vertical-align: top;">advec_s_bc, advec_u_pw,
    2291 advec_u_up, advec_v_pw, advec_v_up, asselin_filter, boundary_conds, check_parameters,
    2292 coriolis, data_output_dvrp, data_output_ptseries, data_output_ts,
    2293 data_output_2d, data_output_3d, diffusion_u, diffusion_v,
    2294 disturb_field, exchange_horiz, exchange_horiz_2d, flow_statistics, header, init_grid,
    2295 init_particles, init_pegrid, init_rankine, init_pt_anomaly,
    2296 init_1d_model, init_3d_model, modules, palm, package_parin, parin,
    2297 poisfft, poismg, prandtl_fluxes, pres, production_e,
    2298 prognostic_equations, read_var_list, read_3d_binary, sor,
    2299 swap_timelevel, time_integration, write_var_list, write_3d_binary</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: preset of tendencies <span style="font-family: Courier New,Courier,monospace;">te_em</span>, <span style="font-family: Courier New,Courier,monospace;">te_um</span>, and <span style="font-family: Courier New,Courier,monospace;">te_vm</span> (<span style="font-family: Courier New,Courier,monospace;">init_1d_model</span>).<br><br>Bugfix in sample for reading user defined data from restart file (<span style="font-family: Courier New,Courier,monospace;">user_init</span>).<br><br>Bugfix in setting diffusivities for cases with the outflow damping layer extending over more than one subdomain (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>).<br><br>Check for possible negative humidities in the initial humidity profile.<br><br>In <span style="font-family: Courier New,Courier,monospace;">Makefile</span>, default suffixes are removed from the suffix list to avoid calling of <span style="font-family: Courier New,Courier,monospace;">m2c</span> in cases of existing <span style="font-family: Courier New,Courier,monospace;">.mod</span> files (problem on Linux systems).</td><td style="vertical-align: top;">Makefile<br><br>check_parameters, init_1d_model, init_3d_model, user_interface</td></tr><tr><td style="vertical-align: top;">19/04/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.2a</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">All system relevant compile and link options (e.g. cpp-directives,
    2300 library paths, etc.) as well as the host identifier (local_host) are
    2301 now specified in the configuration file. This generally allows to install
    2302 PALM on any&nbsp;kind of Linux-, IBM-AIX-, or NEC-SX-system by adding
    2303 appropriate
    2304 settings to the configuration file. A description is added to chapter
    2305 5.0 of the online documentation.<br><br>Scripts are also running under the public domain ksh.<br><br>Filetransfer by ftp removed (options<span style="font-family: Courier New,Courier,monospace;"> -f </span>removed from <span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">mbuild</span>).<br><br>Call of (system-)FLUSH routine moved to new routine<span style="font-family: Courier New,Courier,monospace;"> local_flush</span>.<br><br><span style="font-family: Courier New,Courier,monospace;">return_addres </span>and<span style="font-family: Courier New,Courier,monospace;"> return_username </span>are read from ENVPAR-NAMELIST-file instead of using<span style="font-family: Courier New,Courier,monospace;"> local_getenv</span>.<br><br>Preprocessor strings for different linux clusters changed to "<span style="font-family: Courier New,Courier,monospace;">lc</span>", some preprocessor directives renamed (new:<span style="font-family: Courier New,Courier,monospace;"> __intel_openmp_bug</span> which is used for the bug in<span style="font-family: Courier New,Courier,monospace;"> tridia_1dd </span>and the OpenMP directives). Preprocessor directives for old systems have been removed.<br><br></td><td style="vertical-align: top;">advec_particles,
    2306 check_open, cpu_log, cpu_statistics, data_output_dvrp, flow_statistics,
    2307 header, init_dvrp, init_particles, init_1d_model, init_dvrp,
    2308 init_pegrid, local_getenv, local_system, local_tremain,
    2309 local_tremain_ini, modules, palm, parin, run_control<br><br><span style="font-weight: bold;">new:</span><br>local_flush<br><br><span style="font-weight: bold;">changed scripts:</span><br>mbuild, mrun, .mrun.config.default<br></td></tr><tr><td style="vertical-align: top;">30/05/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.2b</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">Calculation and output of user-defined profiles: New&nbsp;userpar-parameter <span style="font-family: Courier New,Courier,monospace;">data_output_pr_user</span>. In the user-interface, routine <span style="font-family: Courier New,Courier,monospace;">user_check_data_output_pr</span> has been added and <span style="font-family: Courier New,Courier,monospace;">user_statistics</span> has been extended.<br></td><td style="vertical-align: top;">check_parameters, flow_statistics, modules, parin, read_var_list, user_interface, write_var_list</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">In <span style="font-family: Courier New,Courier,monospace;">pres.f90</span>, division through <span style="font-family: Courier New,Courier,monospace;">dt_3d</span>
    2310 replaced by multiplication of the inverse. For performance
    2311 optimisation, this is done in the loop calculating the divergence
    2312 instead of using a seperate loop.<br><br>Variables <span style="font-family: Courier New,Courier,monospace;">var_hom</span> and <span style="font-family: Courier New,Courier,monospace;">var_sum</span> are both renamed <span style="font-family: Courier New,Courier,monospace;">pr_palm</span>.</td><td style="vertical-align: top;">data_output_profiles, flow_statistics, init_3d_model, modules, parin, pres, read_var_list, run_control, time_integration</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: <span style="font-family: Courier New,Courier,monospace;">work_fft*_vec</span> removed from some PRIVATE-declarations (<span style="font-family: Courier New,Courier,monospace;">poisfft</span>).<br><br>Bugfix: <span style="font-family: Courier New,Courier,monospace;">field_chr</span> renamed <span style="font-family: Courier New,Courier,monospace;">field_char</span> (<span style="font-family: Courier New,Courier,monospace;">user_interface</span>).<br><br>Bugfix: output of <span style="font-family: Courier New,Courier,monospace;">use_upstream_for_tke</span> (<span style="font-family: Courier New,Courier,monospace;">header</span>).</td><td style="vertical-align: top;">header, poisfft, user_interface</td></tr><tr><td style="vertical-align: top;">21/06/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.3</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">This version allows runs for the ocean. These runs can be switched on with the new inipar-parameter <span style="font-family: Courier New,Courier,monospace;">ocean</span>.<br><br>Setting this switch has several effects:<br><ul><li>An additional prognostic equation for salinity is solved.</li><li>Potential temperature in buoyancy and stability-related terms is replaced by potential density.</li><li>Potential
    2313 density is calculated from the equation of state for seawater after
    2314 each timestep, using the algorithm proposed by Jackett et al. (2006, J.
    2315 Atmos. Oceanic Technol., <span style="font-weight: bold;">23</span>, 1709-1728).<br>So far, only the initial hydrostatic pressure is entered into this equation.</li><li>z=0 (sea surface) is assumed at the model top (vertical grid index <span style="font-family: Courier New,Courier,monospace;">k=nzt</span> on the w-grid), with negative values of z indicating the depth.</li><li>Initial profiles are constructed (e.g. from <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#pt_vertical_gradient">pt_vertical_gradient</a> / <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#pt_vertical_gradient_level">pt_vertical_gradient_level</a>) starting from the sea surface, using surface values&nbsp;given by <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#pt_surface">pt_surface</a>, <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#sa_surface">sa_surface</a>, <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#ug_surface">ug_surface</a>, and <a href="http://www.muk.uni-hannover.de/%7Eraasch/PALM_group/doc/app/chapter_4.1.html#vg_surface">vg_surface</a>.</li><li>Zero salinity flux is used as default boundary condition at the bottom of the sea.</li><li>If switched on, random perturbations are by default imposed to the upper model domain from zu(nzt*2/3) to zu(nzt-3).</li></ul>Relevant new inipar-parameters to be exclusively used for steering ocean runs are <span style="font-family: Courier New,Courier,monospace;">bc_sa_t</span>, <span style="font-family: Courier New,Courier,monospace;">bottom_salinityflux</span>, <span style="font-family: Courier New,Courier,monospace;">sa_surface</span>, <span style="font-family: Courier New,Courier,monospace;">sa_vertical_gradient</span>, <span style="font-family: Courier New,Courier,monospace;">sa_vertical_gradient_level</span>, and <span style="font-family: Courier New,Courier,monospace;">top_salinityflux</span>.<br><br>Salinity (<span style="font-family: Courier New,Courier,monospace;">sa</span>) and potential density (<span style="font-family: Courier New,Courier,monospace;">rho</span>) are included as new 2d/3d output quantities. Vertical profiles of salinity (<span style="font-family: Courier New,Courier,monospace;">sa</span>), salinity fluxes (<span style="font-family: Courier New,Courier,monospace;">w"sa"</span>, <span style="font-family: Courier New,Courier,monospace;">w*sa*</span>, <span style="font-family: Courier New,Courier,monospace;">wsa</span>), and potential density (<span style="font-family: Courier New,Courier,monospace;">rho</span>) can also be output.<span style="font-family: Courier New,Courier,monospace;"></span></td><td style="vertical-align: top;">advec_s_bc, average_3d_data,<br>boundary_conds, buoyancy,<br>check_parameters,&nbsp;data_output_2d,<br>data_output_3d,&nbsp;diffusion_e,<br>diffusivities,&nbsp;flow_statistics,&nbsp;header,<br>init_grid,&nbsp;init_3d_model,&nbsp;modules,<br>netcdf,&nbsp;parin,&nbsp;production_e,<br>prognostic_equations,<br>read_3d_binary,&nbsp;&nbsp;read_var_list,<br>sum_up_3d_data,&nbsp;swap_timelevel,<br>time_integration,&nbsp;user_interface,<br>write_var_list,&nbsp;write_3d_binary<br><br><span style="font-weight: bold;">new:</span><br>eqn_state_seawater,&nbsp;init_ocean</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Inipar-parameter <span style="font-family: Courier New,Courier,monospace;">use_pt_reference</span> renamed <span style="font-family: Courier New,Courier,monospace;">use_reference.</span><br>Internal variable <span style="font-family: Courier New,Courier,monospace;">hydro_press</span> renamed <span style="font-family: Courier New,Courier,monospace;">hyp</span>, routine <span style="font-family: Courier New,Courier,monospace;">calc_mean_pt_profile</span> renamed <span style="font-family: Courier New,Courier,monospace;">calc_mean_profile</span>.<br><br>The format of the <span style="font-family: Courier New,Courier,monospace;">RUN_CONTROL</span> file has been adjusted for ocean runs.<br><br>Defaults of <span style="font-family: Courier New,Courier,monospace;">.._vertical_gradient_levels</span> changed from <span style="font-style: italic;">-1.0</span> to <span style="font-style: italic;">-9999999.9</span>.</td><td style="vertical-align: top;">advec_particles,&nbsp;buoyancy,&nbsp;<br>calc_liquid_water_content, <br>check_parameters,&nbsp;diffusion_e,<br>diffusivities,&nbsp;header,<br>init_cloud_physics,&nbsp;modules,<br>production_e,&nbsp;prognostic_equations,<br>run_control</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: height above topography instead of height above level k=0 is used for calculating the mixing length (<span style="font-family: Courier New,Courier,monospace;">diffusion_e</span> and <span style="font-family: Courier New,Courier,monospace;">diffusivities</span>).<br><br>Bugfix: error in boundary condition for TKE removed (<span style="font-family: Courier New,Courier,monospace;">advec_s_bc</span>).</td><td style="vertical-align: top;">advec_s_bc,&nbsp;diffusion_e,&nbsp;diffusivities</td></tr><tr><td style="vertical-align: top;">05/10/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.4</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">This version allows runs for a coupled atmosphere-ocean LES.<br><br>Coupling frequency is controlled by new d3par-parameter <span style="font-family: Courier New,Courier,monospace;">dt_coupling</span>, the coupling mode ('<span style="font-style: italic;">atmosphere_to_ocean</span>' or '<span style="font-style: italic;">ocean_to_atmosphere</span>') for the respective processes is read from environment variable <span style="font-family: Courier New,Courier,monospace;">coupling_mode</span>, which is set by the mpiexec-command in <span style="font-weight: bold;">mrun</span>. Communication between the two models is handled by the intercommunicator <span style="font-family: Courier New,Courier,monospace;">comm_inter</span>. Local files opened by the ocean model get the additional suffic "<span style="font-family: Courier New,Courier,monospace;">_O</span>".
    2316 Saturation at k=nzb is assumed for the atmosphere coupled to ocean.
    2317 Usage of the coupled model is described in the new section 3.8.<br><br>A momentum flux can be set as top boundary condition using the new inipar parameters <span style="font-family: Courier New,Courier,monospace;">top_momentumflux_u|v</span>.<br><br>Non-cyclic boundary conditions can be used along all horizontal directions.<br><br>Quantities w*p* and w"e can be output as vertical profiles.<br><br>Initial profiles are reset to constant profiles in case that <span style="font-family: Courier New,Courier,monospace;">initializing_actions</span> /= '<span style="font-style: italic;">set_constant_profiles</span>'. (init_rankine)<br><br>Optionally calculate km and kh from initial TKE e_init.<br>
    2318 </td><td style="vertical-align: top;">boundary_conds,
    2319 check_open, check_parameters, diffusion_u, diffusion_v,
    2320 flow_statistics, header, init_pegrid, init_rankine, init_3d_model,
    2321 local_stop, modules, palm, parin, prandtl_fluxes, pres,
    2322 prognostic_equations, read_var_list, read_3d_binary, swap_timelevel,
    2323 timestep, time_integration, write_var_list, write_3d_binary<br><br><span style="font-weight: bold;">new:</span><br>surface_coupler</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Remaining variables <span style="font-family: Courier New,Courier,monospace;">iran</span> changed to <span style="font-family: Courier New,Courier,monospace;">iran_part</span> (advec_particles, init_particles).<br><br>In case that the presure solver is not called for every Runge-Kutta substep (<span style="font-family: Courier New,Courier,monospace;">call_psolver_at_all_substeps</span> = <span style="font-style: italic;">.F.</span>),
    2324 it is called after the first substep instead of the last. In that case,
    2325 random perturbations are also added to the velocity field after the
    2326 first substep.<br><br>Initialization of <span style="font-family: Courier New,Courier,monospace;">km</span>, <span style="font-family: Courier New,Courier,monospace;">kh</span> = 0.00001 for <span style="font-family: Courier New,Courier,monospace;">ocean</span> = <span style="font-style: italic;">.T.</span> (for <span style="font-family: Courier New,Courier,monospace;">ocean</span> = <span style="font-style: italic;">.F.</span> it remains 0.01).<br><br>Allow <span style="font-family: Courier New,Courier,monospace;">data_output_pr</span> = '<span style="font-style: italic;">q</span>', '<span style="font-style: italic;">wq</span>', '<span style="font-style: italic;">w"q"</span>', '<span style="font-style: italic;">w*q*</span>' for <span style="font-family: Courier New,Courier,monospace;">humidity</span> = <span style="font-style: italic;">.T.</span> (instead of <span style="font-family: Courier New,Courier,monospace;">cloud_physics</span> = <span style="font-style: italic;">.T.</span>).</td><td style="vertical-align: top;">advec_particles, check_for_restart, check_parameters, init_particles, init_3d_model, time_integration<br></td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugs from code parts for non-cyclic boundary conditions are removed:<br>loops for u and v are starting from index <span style="font-family: Courier New,Courier,monospace;">nxlu</span>, <span style="font-family: Courier New,Courier,monospace;">nysv</span>,
    2327 respectively. The radiation boundary condition is used for every
    2328 Runge-Kutta substep. Velocity phase speeds for the radiation boundary
    2329 conditions are calculated for the first Runge-Kutta substep only and
    2330 reused for the further substeps. New arrays <span style="font-family: Courier New,Courier,monospace;">c_u</span>, <span style="font-family: Courier New,Courier,monospace;">c_v</span>, and <span style="font-family: Courier New,Courier,monospace;">c_w</span>
    2331 are defined for this purpose. Several index errors are removed from the
    2332 radiation boundary condition code parts. Upper bounds for calculating <span style="font-family: Courier New,Courier,monospace;">u_0</span> and <span style="font-family: Courier New,Courier,monospace;">v_0</span> (in production_e) are <span style="font-style: italic;">nxr+1</span> and <span style="font-style: italic;">nyn+1</span> because otherwise these values are not available in case of non-cyclic boundary conditions.<br><br>+<span style="font-family: Courier New,Courier,monospace;">dots_num_palm</span> in module user, +module netcdf_control in user_init (both in user_interface)<br><br>Bugfix: wrong sign removed from the buoyancy production term in the case <span style="font-family: Courier New,Courier,monospace;">use_reference</span> = <span style="font-style: italic;">.T.</span> (production_e)<br><br>Bugfix: Error message concerning output of particle concentration (pc) modified (check_parameters).<br><br>Bugfix: Rayleigh damping for ocean fixed.</td><td style="vertical-align: top;">advec_u_pw,
    2333 advec_u_up, advec_v_pw, advec_v_up, boundary_conds, buoyancy,
    2334 check_parameters, coriolis, diffusion_u, diffusion_v, header,
    2335 init_pegrid, init_3d_model, modules, poismg, production_e,
    2336 prognostic_equations, user_interface<br></td></tr><tr><td style="vertical-align: top;">29/11/07</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.4a</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">Pressure boundary conditions for vertical walls added to the multigrid solver. They are applied using new wall flag arrays (<span style="font-family: Courier New,Courier,monospace;">wall_flags_..</span>) which are defined for each grid level. New argument<span style="font-family: Courier New,Courier,monospace;"> gls </span>added to routine<span style="font-family: Courier New,Courier,monospace;"> user_init_grid </span>(<span style="font-family: Courier New,Courier,monospace;">user_interface</span>).<br><br>Plant canopy model of Watanabe (2004,BLM 112,307-341) added. &nbsp;It can be switched on by the new inipar parameter <span style="font-family: Courier New,Courier,monospace;">plant_canopy</span>. The inipar parameter<span style="font-family: Courier New,Courier,monospace;"> canopy_mode </span>can
    2337 be used to prescribe a plant canopy type. The default case is a
    2338 homogeneous plant canopy. Heterogeneous distributions of the leaf area
    2339 density and the canopy drag coefficient can be defined in the new
    2340 routine<span style="font-family: Courier New,Courier,monospace;"> user_init_plant_canopy </span>(<span style="font-family: Courier New,Courier,monospace;">user_interface</span>). The inipar parameters <span style="font-family: Courier New,Courier,monospace;">lad_surface</span>,<span style="font-family: Courier New,Courier,monospace;"> lad_vertical_gradient </span>and<span style="font-family: Courier New,Courier,monospace;"> lad_vertical_gradient_level </span>can be used to prescribe the vertical profile of leaf area density. The inipar parameter<span style="font-family: Courier New,Courier,monospace;"> drag_coefficient </span>determines the canopy drag coefficient. Finally, the inipar parameter<span style="font-family: Courier New,Courier,monospace;"> pch_index </span>determines the index of the upper boundary of the plant canopy.&nbsp; <br><br>Allow new case<span style="font-family: Courier New,Courier,monospace;"> bc_uv_t </span>= <span style="font-style: italic;">'dirichlet_0'</span> for channel flow.<br><br>For unknown variables (CASE DEFAULT) call new subroutine<span style="font-family: Courier New,Courier,monospace;"> user_data_output_dvrp</span>.<br><br>Frequence of sorting particles can be controlled with new particles_par parameter<span style="font-family: Courier New,Courier,monospace;"> dt_sort_particles</span>. Sorting is moved from the SGS timestep loop in<span style="font-family: Courier New,Courier,monospace;"> advec_particles </span>after the end of this loop.</td><td style="vertical-align: top;">advec_particles,
    2341 check_parameters, data_output_dvrp, header, init_3d_model, init_grid,
    2342 init_particles, init_pegrid, modules, package_parin,
    2343 parin,&nbsp;read_var_list,&nbsp;user_interface, write_var_list<br><br><span style="font-weight: bold;">new:</span><br>plant_canopy_model</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Redefine initial<span style="font-family: Courier New,Courier,monospace;"> nzb_local </span>as the actual total size of topography (later the extent of topography in<span style="font-family: Courier New,Courier,monospace;"> nzb_local </span>is reduced by 1dx at the E topography walls and by 1dy at the N topography walls to form the basis for<span style="font-family: Courier New,Courier,monospace;"> nzb_s_inner</span>); for consistency redefine 'single_building' case.<br><br>Vertical profiles now based on<span style="font-family: Courier New,Courier,monospace;"> nzb_s_inner</span>; they are divided by<span style="font-family: Courier New,Courier,monospace;"> ngp_2dh_s_inner </span>(scalars, procucts of scalars) and<span style="font-family: Courier New,Courier,monospace;"> ngp_2dh </span>(staggered velocity components and their products, procucts of scalars and velocity components), respectively.<br><br>Allow two instead of one digit to specify isosurface and slicer variables.<br><br>Status of 3D-volume NetCDF data file only depends on switch<span style="font-family: Courier New,Courier,monospace;"> netcdf_64bit_3d </span>(check_open).<br><br><span style="font-family: Courier New,Courier,monospace;">prognostic_equations </span>include the respective<span style="font-family: Courier New,Courier,monospace;"> wall_*flux </span>in the parameter list of calls of<span style="font-family: Courier New,Courier,monospace;"> diffusion_s</span>. Same as before, only the values<span style="font-family: Courier New,Courier,monospace;"> of wall_heatflux(0:4) </span>can be assigned. At present,<span style="font-family: Courier New,Courier,monospace;">&nbsp; wall_humidityflux</span>,<span style="font-family: Courier New,Courier,monospace;"> wall_qflux</span>,<span style="font-family: Courier New,Courier,monospace;"> wall_salinityflux</span>, and<span style="font-family: Courier New,Courier,monospace;"> wall_scalarflux </span>are kept zero.<span style="font-family: Courier New,Courier,monospace;"> diffusion_s </span>uses the respective<span style="font-family: Courier New,Courier,monospace;"> wall_*flux </span>instead of<span style="font-family: Courier New,Courier,monospace;"> wall_heatflux</span>.
    2344 This update serves two purposes: - it avoids errors in calculations
    2345 with humidity/scalar/salinity and prescribed non-zero wall heatflux, -
    2346 it prepares PALM for a possible assignment of wall fluxes of
    2347 humidity/scalar/salinity in a future releases.</td><td style="vertical-align: top;">buoyancy,
    2348 check_open, data_output_dvrp, diffusion_s, diffusivities,
    2349 flow_statistics, header, init_3d_model, init_dvrp, init_grid, modules,
    2350 prognostic_equations</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: summation of<span style="font-family: Courier New,Courier,monospace;"> sums_l_l </span>(<span style="font-family: Courier New,Courier,monospace;">diffusivities</span>).<br><br>Several bugfixes in the ocean part: Initial density<span style="font-family: Courier New,Courier,monospace;"> rho </span>is calculated (<span style="font-family: Courier New,Courier,monospace;">init_ocean</span>). Error in initializing<span style="font-family: Courier New,Courier,monospace;"> u_init </span>and<span style="font-family: Courier New,Courier,monospace;"> v_init </span>removed (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>). Calculation of density flux now starts from<span style="font-family: Courier New,Courier,monospace;"> nzb+1 </span>(<span style="font-family: Courier New,Courier,monospace;">production_e</span>).<br><br>Bugfix: <span style="font-family: Courier New,Courier,monospace;">pleft</span>/<span style="font-family: Courier New,Courier,monospace;">pright</span> changed to <span style="font-family: Courier New,Courier,monospace;">pnorth</span>/<span style="font-family: Courier New,Courier,monospace;">psouth</span> in sendrecv of particle tail numbers along y, small bugfixes in the SGS part (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>).<br><br>Bugfix:<span style="font-family: Courier New,Courier,monospace;"> model_string </span>needed a default value (<span style="font-family: Courier New,Courier,monospace;">combine_plot_fields</span>).<br><br>Bugfix: wavenumber calculation for even<span style="font-family: Courier New,Courier,monospace;"> nx </span>in routines<span style="font-family: Courier New,Courier,monospace;"> maketri </span>(<span style="font-family: Courier New,Courier,monospace;">poisfft</span>).<br><br>Bugfix: assignment of fluxes at walls.<br><br>Bugfix: absolute value of<span style="font-family: Courier New,Courier,monospace;"> f </span>must be used when calculating the Blackadar mixing length (<span style="font-family: Courier New,Courier,monospace;">init_1d_model</span>).</td><td style="vertical-align: top;">advec_particles,
    2351 check_parameters, combine_plot_fields, diffusion_s, diffusivities,
    2352 init_ocean, init_1d_model, poisfft, production_e</td></tr><tr><td style="vertical-align: top;">16/09/08</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.5</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">The
    2353 turbulence recycling method of Kataoka and Mizuno (2002) has been
    2354 implemented. A precursor run must be used to initialize the main run
    2355 with a quasi-stationary turbulence state (see <span style="font-family: monospace;">initializing_actions</span> = <span style="font-style: italic;">'read_data_for_recycling'</span>).
    2356 The precursor run may have a smaller domain than the main run, which
    2357 helps to spare CPU time. New parameters for steering the recycling
    2358 method are <span style="font-family: monospace;">turbulent_inflow</span>, <span style="font-family: monospace;">recycling_width</span>, <span style="font-family: monospace;">inflow_damping_height</span>, and <span style="font-family: monospace;">inflow_damping_width</span>.<br><br>One
    2359 new feature related with the recycling method is that within a job
    2360 chain, the number of processors or the virtual processor grid is now
    2361 allowed to&nbsp;change. Such a change modifies the domain decomposition
    2362 and requires that the PEs within a restart job have to know from which
    2363 file(s) they have to read their restart data (up to now there has been
    2364 a one to one relation between the restart files and the PEs, i.e.
    2365 processor 4 only reads data from file "_0004"). Informations about the
    2366 subdomain index limits of all restart files are now written by PE0 (to
    2367 file "_0000"). Also, all variables containing global values which do
    2368 not depend on the subdomain are written to file "_0000" only. In a
    2369 restart run, this file is opened by all PEs to read these global values
    2370 and the informations about the subdomain index limits. Depending on
    2371 these index limit information it is decided which restart file(s)
    2372 has/have to be opened in order to read the complete data necessary for
    2373 the current subdomain.<br><br>The plant canopy model has been extended
    2374 to the prognostic equation for&nbsp;the potential temperature
    2375 and&nbsp;passive scalar, as proposed by Watanabe (2004) and Shaw and
    2376 Schumann (1992).<br><br>Particle advection adjusted for ocean runs.<br><br>Grid
    2377 coarsening (multigrid method) is limited to subdomains (i.e. no
    2378 collection of data on PE0 for further coarsening beyond subdomains) if <span style="font-family: monospace;">mg_switch_to_pe0_level</span> = <span style="font-style: italic;">-1</span>.<br><br>User-defined spectra are allowed.<br><br>Output of <span style="font-family: monospace;">q*2</span> profile and <span style="font-family: monospace;">w"u"0</span>, <span style="font-family: monospace;">w"v"0</span>, <span style="font-family: monospace;">w"q"0</span> timeseries are added.<br><br>Argument<span style="font-family: monospace;"> -c </span>introduced to most of the subjob calls, which allows the user to choose his own job catalog by setting the environment variable<span style="font-family: monospace;"> job_catalog </span>in the configuration file (default is <span style="font-family: monospace;">~/job_queue</span>).<br><br>This release contains first adjustments for the SGI-ICE system at HLRN.<br><br><span style="font-weight: bold;">Attention: On the SGI-ICE,&nbsp;runs are still aborted or are hanging for unknown reasons from time to time.</span></td><td style="vertical-align: top;">advec_particles, calc_spectra, check_open, check_parameters, data_output_spectra,
    2379 header, init_3d_model, init_particles, init_pegrid, modules, netcdf, parin, particle_boundary_conds, plant_canopy_model,
    2380 
    2381 prognostic_equations, read_3d_binary, read_var_list, time_integration,
    2382 user_interface, write_3d_binary, write_var_list<br><br><span style="font-weight: bold;">new:</span><br>inflow_turbulence<br></td></tr><tr><td align="undefined" valign="undefined">&nbsp;</td><td align="undefined" valign="undefined">&nbsp;</td><td align="undefined" valign="undefined">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">Allow 100 spectra levels instead of 10 for consistency with define_netcdf_header. (<span style="font-family: monospace;">calc_spectra</span>, <span style="font-family: monospace;">data_output_spectra</span>, <span style="font-family: monospace;">header</span>, <span style="font-family: monospace;">modules</span>, <span style="font-family: monospace;">netcdf</span>)<br><br>Modification
    2383 of the integrated version of the profile function for momentum for
    2384 unstable stratification; more consistent flux definitions. (<span style="font-family: monospace;">wall_fluxes</span>, <span style="font-family: monospace;">production_e</span>)<br><br>Strict grid matching along z is not needed for mg-solver. (<span style="font-family: monospace;">check_parameters</span>)<br><br>Sharp
    2385 lateral edges of the plant canopy introduced. Before, smaller values of
    2386 the leaf area density than those applied in the prognostic equation for
    2387 the vertical velocity were used in the prognostic equations for u and v
    2388 at the boundaries of the plant_canopy. (<span style="font-family: monospace;">init_3d_model</span>)<br><br>-<span style="font-family: monospace;">cross_ts_*</span> (<span style="font-family: monospace;">read_var_list</span>, <span style="font-family: monospace;">write_var_list</span>), -<span style="font-family: monospace;">dopr_time_count</span>, old profil parameters (<span style="font-family: monospace;">cross_...</span>, <span style="font-family: monospace;">dopr_crossindex</span>,&nbsp;<span style="font-family: monospace;">profile_***</span>) removed. (<span style="font-family: monospace;">read_3d_binary</span>, <span style="font-family: monospace;">write_3d_binary</span>)<br><br>Reading/writing of <span style="font-family: monospace;">hom_sum</span>, <span style="font-family: monospace;">volume_flow_area</span>, <span style="font-family: monospace;">volume_flow_initial</span> is moved from <span style="font-family: monospace;">..._3d_binary</span> to <span style="font-family: monospace;">..._var_list</span>, <span style="font-family: monospace;">hom_sum</span> is now allocated in <span style="font-family: monospace;">parin</span> instead of <span style="font-family: monospace;">init_3d_model</span>.<br><br><span style="font-family: monospace;">npex</span>, <span style="font-family: monospace;">npey</span> moved from inipar- to d3par-namelist. (<span style="font-family: monospace;">parin</span>)<br><br><span style="font-family: monospace;">myid_char14</span>
    2389 removed. This was used, since on IBM machines the process rank could be
    2390 changed when the final communicator was defined, in order to save the
    2391 preliminary processor-id for opening the binary output file for
    2392 restarts (unit 14), because otherwise a mismatch occured when reading
    2393 this file in a restart job. This mechanism is not needed any more since
    2394 the subdomain informations are now contained in file _0000. (<span style="font-family: monospace;">parin</span>, <span style="font-family: monospace;">check_open</span>)<br><br>Transpositions for the 2D domain decomposition have been optimized by using <span style="font-family: monospace;">f_inv</span>
    2395 as an automatic array instead of providing the memory by a dummy
    2396 argument. This spares one copy loop per transposition. Order of indices
    2397 in the 3D loops in some of the transpose routines have been rearranged
    2398 for better cache utilization. Both have been suggested by Roland
    2399 Richter (SGI) as part of the HLRN-II benchmark process. (<span style="font-family: monospace;">transpose</span>)<br><br>Workaround for getting information about the coupling mode, because the<span style="font-family: monospace;"> -env </span>Option (mpiexec) is not available on many systems (SGI, lcxt4 at&nbsp; Bergen Center for Computational Science). (<span style="font-family: monospace;">palm</span>, <span style="font-family: monospace;">mrun</span>)<br><br>Format adjustments in order to allow CPU# &gt; 999. (<span style="font-family: monospace;">cpu_statistics</span>)<br><br>Provisional solution for run_control_1d output: add 'CALL check_open( 15 )'. (<span style="font-family: monospace;">init_1d_model</span>)<br><br>Subdomain data are read into temporary arrays <span style="font-family: monospace;">pf_tmp</span> / <span style="font-family: monospace;">pf3d_tmp</span> in order to avoid INTEL compiler warnings about (automatic) creation of temporary arrays. (<span style="font-family: monospace;">combine_plot_fields</span>)<br><br>Time coordinate t=0 stored on netcdf-file only if an output is required for this time for at least one of the profiles.<br><br>Output of spline timeseries <span style="font-family: monospace;">splptx</span> etc. removed. (<span style="font-family: monospace;">flow_statistics</span>)</td><td style="vertical-align: top;">advec_s_ups,
    2400 advec_u_ups, advec_v_ups, advec_w_ups, calc_spectra, check_open,
    2401 check_parameters, cpu_statistics, data_output_profiles,
    2402 data_output_spectra, flow_statistics, header, init_1d_model,
    2403 init_3d_model, modules, netcdf, palm, parin, poisfft, production_e,
    2404 read_3d_binary, read_var_list, transpose, wall_fluxes, write_3d_binary, write_var_list<br></td></tr><tr><td align="undefined" valign="undefined">&nbsp;</td><td align="undefined" valign="undefined">&nbsp;</td><td align="undefined" valign="undefined">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix:
    2405 modification of the calculation of the vertical turbulent momentum
    2406 fluxes u'w' and v'w'; the first usws that is computed corresponds to
    2407 -u'w'/u* and not as priorily assumed to (-u'w')**0.5, the first vsws
    2408 that is computed corresponds to -v'w'/u* and not as priorily assumed to
    2409 (-v'w')**0.5. Therefore, the intermediate result for usws has to be
    2410 multiplied by -u* instead by itself in order to get u'w'. Accordingly,
    2411 the intermediate result for vsws has to be multiplied by -u* instead by
    2412 itself in order to get v'w'. As u* is calculated for the position of a
    2413 scalar an additional interpolation of u* to the position of u and v,
    2414 respectively, is necessary. As u* is not determined for the ghost
    2415 points on each PE, an additional exchange of information from
    2416 neighbouring PEs is necessary. Tests showed that this
    2417 decreases u* by some 10% and increases TKE and momentum fluxes by some
    2418 10% because friction was underestimated and momentum fluxes were
    2419 wrongly calculated due to the bug. (<span style="font-family: monospace;">prandtl_fluxes</span>, <span style="font-family: monospace;">wall_fluxes</span>)<br><br><span style="font-weight: bold;">Attention:</span> <br><span style="font-weight: bold;">
    2420 The content of the testresult-file (run control output) has changed
    2421 due to the above bugfix.</span><br><br>Bugfix:
    2422 change definition of us_wall from 1D to 2D.&nbsp;<br><br>Bugfix: exponent = 1.0 / ( ny + 1.0 ) in calc_spectra_x. (<span style="font-family: monospace;">calc_spectra</span>)<br><br>Bugfix: calculation of horizontal fluxes at vertical walls. (<span style="font-family: monospace;">diffusion_s</span>)<br><br>Bugfix: zero assignments to tendency arrays in case of restarts. (<span style="font-family: monospace;">init_3d_model</span>)<br><br>Bugfix: wrong grid level used in multigrid solver, routine <span style="font-family: monospace;">restrict</span>. (<span style="font-family: monospace;">poismg</span>)<br><br>Bugfix:
    2423 Construction of vertical profiles when 10 gradients have been specified
    2424 in the parameter list (ug, vg, pt, q, sa, lad). (<span style="font-family: monospace;">check_parameters</span>)<br><br>Bugfix: Determination of the number of vertical levels for which spectra shall be output - 100 replaced by 10. (<span style="font-family: monospace;">netcdf</span>)<br><br>Bugfix:
    2425 Lengths of those characters that are needed for the output of the
    2426 characteristic levels of potential temperature, the geostrophic wind,
    2427 scalar concentration, humidity and leaf area density to the header file
    2428 has been increased. (<span style="font-family: monospace;">header</span>)<br><br>Bugfix: add ')' in <span style="font-family: monospace;">user_read_restart_data</span>.<br><br>The leaf area density is explicitly set to its surface value at k=0. (<span style="font-family: monospace;">check_parameters</span>)<br><br>Introduce<span style="font-family: monospace;"> prefix_chr</span> to ensure unique dvrp_file path.<br><br>small bugfixes for <span style="font-family: monospace;">user_interface</span> sample code (comments):<br>- initialize ustvst with 0.0 as it is now computed only until <span style="font-family: monospace;">nxr</span> and <span style="font-family: monospace;">nyn</span><br>- two ALLOCATE statements moved from <span style="font-family: monospace;">user_read_restart_data</span> back to <span style="font-family: monospace;">user_init</span><br>- remove 'READ (13) u2_av' statement in <span style="font-family: monospace;">user_read_restart_data</span><br><br>Bugfix: remove IF statement in <span style="font-family: monospace;">plant_canopy_model_ij</span>.<br><br>Bugfix: divide sums(k,8) (e) and sums(k,34) (e*) by ngp_2dh_s_inner(k,sr) (like other scalars). (<span style="font-family: monospace;">flow_statistics</span>)<br><br>Bugfix: <span style="font-family: monospace;">dopr_time_count</span>
    2429 was written on the binary file, which caused that NetCDF files newly
    2430 created by restart files (no append of existing files!) contained
    2431 uneccessary time levels. (<span style="font-family: monospace;">read_3d_binary</span>, <span style="font-family: monospace;">write_3d_binary</span>)<br><br>Bugfix: extra '*' removed in user_statistics sample code. (<span style="font-family: monospace;">user_interface</span>)<br><br>Bugfix: a stop command was missing in some cases of the parallel branch. (<span style="font-family: monospace;">local_stop</span>)<br><br>Bugfix in volume flow control for non-cyclic boundary conditions. (<span style="font-family: monospace;">pres</span>)<br><br>Bugfix: misplaced #endif directives. (<span style="font-family: monospace;">combine_plot_fields</span>)<br><br>Data are collected from PE0 in an ordered sequence which seems to avoid hanging of processes on SGI-ICE. (<span style="font-family: monospace;">cpu_statistics</span>)</td><td style="vertical-align: top;">calc_spectra,
    2432 check_parameters, cpu_statistics, diffusion_s, flow_statistics,
    2433 init_3d_model, init_dvrp, local_stop, plant_canopy_model, poismg,
    2434 prandtl_fluxes, pres, read_3d_binary, user_interface, wall_fluxes,
    2435 write_3d_binary<br></td></tr><tr><td style="vertical-align: top;">02/02/09</td><td style="vertical-align: top;">SR</td><td style="vertical-align: top;">3.6<br>(r228)</td><td style="vertical-align: top;">N</td><td style="vertical-align: top;">This
    2436 release contains further additions, changes, and bugfixes for the
    2437 SGI-ICE system, as well as important changes like the splitting of the
    2438 user-interface into single files, a complete revision of the
    2439 pre-compiling mechanism allowing to use different make-depositories
    2440 simultaneously, and a revision of the reading-mechanism from restart
    2441 files, which has no more restrictions in case that the previous and
    2442 current run have different domain/subdomain sizes. A new handling of
    2443 all kind of output messages is introduced with this release and will be
    2444 applied to all existing messages within the next releases.<br><br><span style="font-weight: bold;">New features are:</span><br style="font-weight: bold;"><br>Restart runs on SGI-ICE are working. (mrun)<br>2d-decomposition is default on SGI-ICE systems. (init_pegrid)<br><br>Ocean-atmosphere coupling realized with MPI-1. mrun adjusted for this case (-Y option). Check that PALM is called with <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option "<span style="font-style: italic;">-K parallel</span>" for coupling. Adjustments in <span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">mbuild</span>, and <span style="font-family: Courier New,Courier,monospace;">subjob</span> for lcxt4.<br><br>DVRP arguments changed to single precision, mode pathlines added.<br><br>User can add additional routines in files <span style="font-family: Courier New,Courier,monospace;">user_additional_routines</span>.<br><br>User can check user parameters and deduce further quantities in <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>.</td><td style="vertical-align: top;">check_for_restart,
    2445 check_parameters, data_output_dvrp, init_dvrp, init_pegrid, local_stop,
    2446 modules, package_parin, palm, surface_coupler, timestep<br><br>Makefile,&nbsp;mbuild, mrun, subjob<br><br><span style="font-weight: bold;">new:</span><br>init_coupling, user_additional_routines, user_check_parameters</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">C</td><td style="vertical-align: top;">&nbsp;User interface has been split into single files.<br><br>Type of variables <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span>
    2447 changed to INTEGER(8) in order to avoid "out of range" problems, which
    2448 result in measured negative time intervals. (cpu_log, local_tremain,
    2449 local_tremain_ini)<br><br>Reading mechanism from restart files
    2450 completely revised. The subdomain/total domain size is now allowed to
    2451 vary arbitrarily between the current and previous run. (read_var_list,
    2452 read_3d_binary, user_read_restart_data)<br><br>Precompilation mechanism (<span style="font-family: Courier New,Courier,monospace;">mbuild</span>) completely revised: the source-tarfile remains in the source directory (<span style="font-family: Courier New,Courier,monospace;">trunk/SOURCE</span>).
    2453 One depository per block (given in the config-file) is created. Always
    2454 all files from the source directory are copied to the respective
    2455 depository. No additional file checks are done any more (mrun version
    2456 2.1). The depository name used contains the conditions given by <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option "<span style="font-family: Courier New,Courier,monospace;">-K</span>". (mbuild, mrun)<br><br>Output messages (including required stop of execution) can now be handled with the new subroutine&nbsp;<span style="font-family: Courier New,Courier,monospace;">message</span>. All output messages will be replaced by this routine step by step within the next revisions.<br><br>Neumann boundary condition at <span style="font-family: Courier New,Courier,monospace;">k=nzb</span> is explicitly set for better reading, although this has been already done in boundary_conds. (advec_s_bc)<br><br>Origin of the xy-coordinate system shifted from the center of the first grid cell (indices <span style="font-family: Courier New,Courier,monospace;">i=0</span>, <span style="font-family: Courier New,Courier,monospace;">j=0</span>) to the south-left corner of this cell. (netcdf) Topography definition according to new user parameter <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span>. (init_grid, modules, user_header, user_init_grid, user_parin)</td><td style="vertical-align: top;">advec_s_bc,
    2457 check_parameters, cpu_log, init_grid, local_stop, local_tremain,
    2458 local_tremain_ini, modules, netcdf, read_3d_binary, read_var_list,
    2459 user_read_restart_data<br><br>Makefile, mbuild, mrun<br><br><span style="font-weight: bold;">removed:</span><br>user_interface<br><br><span style="font-weight: bold;">new:</span><br>message,
    2460 user_3d_data_averaging, user_actions, user_advec_particles,
    2461 user_check_data_output, user_check_data_output_pr, user_data_output_2d,
    2462 user_data_output_3d, user_data_output_dvrp, user_define_netcdf_grid,
    2463 user_dvrp_coltab, user_header, user_init_3d_model, user_init,
    2464 user_init_grid, user_init_particles, user_init_plant_canopy,
    2465 user_last_actions, user_parin, user_parin, user_particle_attributes,
    2466 user_read_restart_data, user_spectra, user_statistics</td></tr><tr><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">&nbsp;</td><td style="vertical-align: top;">E</td><td style="vertical-align: top;">Bugfix: array <span style="font-family: Courier New,Courier,monospace;">d</span> is reallocated in case that multigrid is used. (calc_spectra)<br><br>Bugfixes for nonparallel execution. (check_for_restart, cpu_statistics, inflow_turbulence,&nbsp;timestep)<br><br>Size of <span style="font-family: Courier New,Courier,monospace;">pf3d </span>adjusted to the required output size (1 gridpoint less, along all three dimensions), because output of a subset of the data (<span style="font-family: Courier New,Courier,monospace;">pf3d(nxa:nxe...)</span>) in the NF90_PUT_VAR statement caused segmentation fault with the INTEL compiler. (combine_plot_fields)<br><br>Bugfix: error in <span style="font-family: Courier New,Courier,monospace;">zu</span> index in case of <span style="font-family: Courier New,Courier,monospace;">section_xy=-1</span>. (header)<br><br>Inconsistency
    2467 removed: as the thermal stratification is not taken into account for
    2468 the evaluation of the wall fluxes at vertical walls, the eddy viscosity
    2469 <span style="font-family: Courier New,Courier,monospace;">km</span> must not be used for the evaluation of the velocity gradients <span style="font-family: Courier New,Courier,monospace;">dudy</span>, <span style="font-family: Courier New,Courier,monospace;">dwdy</span>, <span style="font-family: Courier New,Courier,monospace;">dvdx</span> and <span style="font-family: Courier New,Courier,monospace;">dwdx</span>. (production_e)<br><br>Bugfix in calculating <span style="font-family: Courier New,Courier,monospace;">k</span> index in case of oceans runs. (sort_particles)<br><br>Bugfix: no output of particle concentration and radius unless particles have been started. (data_output_2d)<br><br>Bugfix: reading of <span style="font-family: Courier New,Courier,monospace;">spectrum_x|y</span> from restart files ignored if total numbers of grid points do not match. (read_3d_binary)<br><br>Bugfix: abort in case that absolute temperature is below zero. (init_cloud_physics)</td><td style="vertical-align: top;">advec_particles,
    2470 calc_spectra, check_for_restart, cpu_statistics, data_output_2d,
    2471 header, inflow_turbulence, init_cloud_physics, production_e,
    2472 read_3d_binary, timestep<br><br>combine_plot_fields</td></tr><tr>
    2473       <td style="vertical-align: top;">23/09/09<br>
    2474       </td>
    2475       <td style="vertical-align: top;">SR<br>
    2476       </td>
    2477       <td style="vertical-align: top;">3.7 (r392)<br>
    2478       </td>
    2479       <td style="vertical-align: top;">N<br>
    2480       </td>
    2481       <td style="vertical-align: top;"><span style="font-weight: bold;">Most important changes:</span>
     45<table style="text-align: left; width: 100%; vertical-align: top;" border="1" cellpadding="2" cellspacing="2">
     46  <tbody>
     47    <tr>
     48      <td style="vertical-align: bottom; width: 27px;"><big><span style="font-weight: bold;">date</span></big><br>
     49      <br>
     50      </td>
     51      <td style="width: 38px;"><big><span style="font-weight: bold;">author</span></big><br>
     52      </td>
     53      <td style="width: 42px;"><big><span style="font-weight: bold;">svn revision</span></big><br>
     54      </td>
     55      <td style="width: 40px;"><big><span style="font-weight: bold;">latest release</span></big><br>
     56      </td>
     57      <td style="width: 27px;"><big><span style="font-weight: bold;">type</span></big><br>
     58      </td>
     59      <td style="width: 497px;"><big><span style="font-weight: bold;">description</span></big><br>
     60      </td>
     61      <td style="width: 189px;"><big><span style="font-weight: bold;">affected routines</span></big><br>
     62      </td>
     63    </tr>
     64    <tr>
     65      <td style="vertical-align: top; width: 27px;"><br>
     66      </td>
     67      <td style="vertical-align: top; width: 38px;"><br>
     68      </td>
     69      <td style="vertical-align: top; width: 42px;"><br>
     70      </td>
     71      <td style="vertical-align: top; width: 40px;"><br>
     72      </td>
     73      <td style="vertical-align: top; width: 27px;"><br>
     74      </td>
     75      <td style="vertical-align: top; width: 497px;"><br>
     76      </td>
     77      <td style="vertical-align: top; width: 189px;"><br>
     78      </td>
     79    </tr>
     80    <tr>
     81      <td style="vertical-align: top; width: 27px;"><br>
     82      </td>
     83      <td style="vertical-align: top; width: 38px;"><br>
     84      </td>
     85      <td style="vertical-align: top; width: 42px;"><br>
     86      </td>
     87      <td style="vertical-align: top; width: 40px;"><br>
     88      </td>
     89      <td style="vertical-align: top; width: 27px;"><br>
     90      </td>
     91      <td style="vertical-align: top; width: 497px;"><br>
     92      </td>
     93      <td style="vertical-align: top; width: 189px;"><br>
     94      </td>
     95    </tr>
     96    <tr>
     97      <td style="vertical-align: top; width: 27px;"><br>
     98      </td>
     99      <td style="vertical-align: top; width: 38px;"><br>
     100      </td>
     101      <td style="vertical-align: top; width: 42px;"><br>
     102      </td>
     103      <td style="vertical-align: top; width: 40px;"><br>
     104      </td>
     105      <td style="vertical-align: top; width: 27px;"><br>
     106      </td>
     107      <td style="vertical-align: top; width: 497px;"><br>
     108      </td>
     109      <td style="vertical-align: top; width: 189px;"><br>
     110      </td>
     111    </tr>
     112    <tr>
     113      <td style="vertical-align: top; width: 27px;"><br>
     114      </td>
     115      <td style="vertical-align: top; width: 38px;"><br>
     116      </td>
     117      <td style="vertical-align: top; width: 42px;"><br>
     118      </td>
     119      <td style="vertical-align: top; width: 40px;"><br>
     120      </td>
     121      <td style="vertical-align: top; width: 27px;"><br>
     122      </td>
     123      <td style="vertical-align: top; width: 497px;"><br>
     124      </td>
     125      <td style="vertical-align: top; width: 189px;"><br>
     126      </td>
     127    </tr>
     128    <tr>
     129      <td style="vertical-align: top; width: 27px;"><br>
     130      </td>
     131      <td style="vertical-align: top; width: 38px;"><br>
     132      </td>
     133      <td style="vertical-align: top; width: 42px;"><br>
     134      </td>
     135      <td style="vertical-align: top; width: 40px;"><br>
     136      </td>
     137      <td style="vertical-align: top; width: 27px;"><br>
     138      </td>
     139      <td style="vertical-align: top; width: 497px;"><br>
     140      </td>
     141      <td style="vertical-align: top; width: 189px;"><br>
     142      </td>
     143    </tr>
     144    <tr>
     145      <td style="vertical-align: top; width: 27px;"><br>
     146      </td>
     147      <td style="vertical-align: top; width: 38px;"><br>
     148      </td>
     149      <td style="vertical-align: top; width: 42px;"><br>
     150      </td>
     151      <td style="vertical-align: top; width: 40px;"><br>
     152      </td>
     153      <td style="vertical-align: top; width: 27px;"><br>
     154      </td>
     155      <td style="vertical-align: top; width: 497px;"><br>
     156      </td>
     157      <td style="vertical-align: top; width: 189px;"><br>
     158      </td>
     159    </tr>
     160    <tr>
     161      <td style="vertical-align: top; width: 27px;"><br>
     162      </td>
     163      <td style="vertical-align: top; width: 38px;"><br>
     164      </td>
     165      <td style="vertical-align: top; width: 42px;"><br>
     166      </td>
     167      <td style="vertical-align: top; width: 40px;"><br>
     168      </td>
     169      <td style="vertical-align: top; width: 27px;"><br>
     170      </td>
     171      <td style="vertical-align: top; width: 497px;"><br>
     172      </td>
     173      <td style="vertical-align: top; width: 189px;"><br>
     174      </td>
     175    </tr>
     176    <tr>
     177      <td style="vertical-align: top; width: 27px;"><br>
     178      </td>
     179      <td style="vertical-align: top; width: 38px;"><br>
     180      </td>
     181      <td style="vertical-align: top; width: 42px;"><br>
     182      </td>
     183      <td style="vertical-align: top; width: 40px;"><br>
     184      </td>
     185      <td style="vertical-align: top; width: 27px;"><br>
     186      </td>
     187      <td style="vertical-align: top; width: 497px;"><br>
     188      </td>
     189      <td style="vertical-align: top; width: 189px;"><br>
     190      </td>
     191    </tr>
     192    <tr>
     193      <td style="vertical-align: top; width: 27px;"><br>
     194      </td>
     195      <td style="vertical-align: top; width: 38px;"><br>
     196      </td>
     197      <td style="vertical-align: top; width: 42px;"><br>
     198      </td>
     199      <td style="vertical-align: top; width: 40px;"><br>
     200      </td>
     201      <td style="vertical-align: top; width: 27px;"><br>
     202      </td>
     203      <td style="vertical-align: top; width: 497px;"><br>
     204      </td>
     205      <td style="vertical-align: top; width: 189px;"><br>
     206      </td>
     207    </tr>
     208    <tr>
     209      <td style="vertical-align: top; width: 27px;"><br>
     210      </td>
     211      <td style="vertical-align: top; width: 38px;"><br>
     212      </td>
     213      <td style="vertical-align: top; width: 42px;"><br>
     214      </td>
     215      <td style="vertical-align: top; width: 40px;"><br>
     216      </td>
     217      <td style="vertical-align: top; width: 27px;"><br>
     218      </td>
     219      <td style="vertical-align: top; width: 497px;"><br>
     220      </td>
     221      <td style="vertical-align: top; width: 189px;"><br>
     222      </td>
     223    </tr>
     224    <tr>
     225      <td style="vertical-align: top; width: 27px;"><br>
     226      </td>
     227      <td style="vertical-align: top; width: 38px;"><br>
     228      </td>
     229      <td style="vertical-align: top; width: 42px;"><br>
     230      </td>
     231      <td style="vertical-align: top; width: 40px;"><br>
     232      </td>
     233      <td style="vertical-align: top; width: 27px;"><br>
     234      </td>
     235      <td style="vertical-align: top; width: 497px;"><br>
     236      </td>
     237      <td style="vertical-align: top; width: 189px;"><br>
     238      </td>
     239    </tr>
     240    <tr>
     241      <td style="vertical-align: top; width: 27px;"><br>
     242      </td>
     243      <td style="vertical-align: top; width: 38px;"><br>
     244      </td>
     245      <td style="vertical-align: top; width: 42px;"><br>
     246      </td>
     247      <td style="vertical-align: top; width: 40px;"><br>
     248      </td>
     249      <td style="vertical-align: top; width: 27px;"><br>
     250      </td>
     251      <td style="vertical-align: top; width: 497px;"><br>
     252      </td>
     253      <td style="vertical-align: top; width: 189px;"><br>
     254      </td>
     255    </tr>
     256    <tr>
     257      <td style="vertical-align: top; width: 27px;"><br>
     258      </td>
     259      <td style="vertical-align: top; width: 38px;"><br>
     260      </td>
     261      <td style="vertical-align: top; width: 42px;"><br>
     262      </td>
     263      <td style="vertical-align: top; width: 40px;"><br>
     264      </td>
     265      <td style="vertical-align: top; width: 27px;"><br>
     266      </td>
     267      <td style="vertical-align: top; width: 497px;"><br>
     268      </td>
     269      <td style="vertical-align: top; width: 189px;"><br>
     270      </td>
     271    </tr>
     272    <tr>
     273      <td style="vertical-align: top; width: 27px;">23/09/09<br>
     274      </td>
     275      <td style="vertical-align: top; width: 38px;">SR<br>
     276      </td>
     277      <td style="vertical-align: top; width: 42px;">392<br>
     278      </td>
     279      <td style="vertical-align: top; width: 40px;">3.7<br>
     280      </td>
     281      <td style="vertical-align: top; width: 27px;">N<br>
     282      </td>
     283      <td style="vertical-align: top; width: 497px;"><span style="font-weight: bold;">Most
     284important changes:</span>
    2482285atmosphere-ocean coupling has been improved and steering of
    2483286dvr-software is more user-friendly now. Beside that, the release
    2484287contains a lot of optimizations, changes, and bugfixes which have
    2485288accumulated over the last months.<br>
    2486       <br>
     289
     290      <br>
     291
    2487292The atmosphere-ocean coupling allows to use independent precursor runs
    2488293in order to account for different spin-up times. The time when coupling
    2489 has to be started is given by new inipar parameter <span style="font-family: Courier New,Courier,monospace;">coupling_start_time</span>. The precursor ocean run has to be started using new <span style="font-weight: bold;">mrun</span> option "<span style="font-family: Courier New,Courier,monospace;">-y</span>" in order to add the appendix "<span style="font-family: Courier New,Courier,monospace;">_O</span>" to all output files. (<span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>, <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">init_coupling</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>, <span style="font-family: Courier New,Courier,monospace;">time_integration</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2490 
    2491       <br>
     294has to be started is given by new inipar parameter <span style="font-family: Courier New,Courier,monospace;">coupling_start_time</span>.
     295The precursor ocean run has to be started using new <span style="font-weight: bold;">mrun</span> option "<span style="font-family: Courier New,Courier,monospace;">-y</span>" in
     296order to add the appendix "<span style="font-family: Courier New,Courier,monospace;">_O</span>" to all
     297output files. (<span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>,
     298      <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     299      <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     300      <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>,
     301      <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>,
     302      <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>,
     303      <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>,
     304      <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>,
     305      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     306      <span style="font-family: Courier New,Courier,monospace;">init_coupling</span>,
     307      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     308      <span style="font-family: Courier New,Courier,monospace;">mrun</span>,
     309      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     310      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     311      <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>,
     312      <span style="font-family: Courier New,Courier,monospace;">time_integration</span>,
     313      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     314
     315      <br>
     316
    2492317Clipping of dvrp output implemented. Default colourtable for particles
    2493318implemented, particle attributes (color, dvrp_size) can be set with new
    2494 parameters <span style="font-family: Courier New,Courier,monospace;">particle_color</span>, <span style="font-family: Courier New,Courier,monospace;">particle_dvrpsize</span>, <span style="font-family: Courier New,Courier,monospace;">color_interval</span>, <span style="font-family: Courier New,Courier,monospace;">dvrpsize_interval</span>. Slicer attributes (dvrp) are set with new routine <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span> and are controlled with existing parameters <span style="font-family: Courier New,Courier,monospace;">slicer_range_limits</span>. (<span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span>,&nbsp; <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>)<br>
    2495 
    2496       <br>
     319parameters <span style="font-family: Courier New,Courier,monospace;">particle_color</span>,
     320      <span style="font-family: Courier New,Courier,monospace;">particle_dvrpsize</span>,
     321      <span style="font-family: Courier New,Courier,monospace;">color_interval</span>,
     322      <span style="font-family: Courier New,Courier,monospace;">dvrpsize_interval</span>.
     323Slicer attributes (dvrp) are set with new routine <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span>
     324and are controlled with existing parameters <span style="font-family: Courier New,Courier,monospace;">slicer_range_limits</span>.
     325(<span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>,
     326      <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>,
     327      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     328      <span style="font-family: Courier New,Courier,monospace;">set_slicer_attributes_dvrp</span>,&nbsp;
     329      <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>)<br>
     330
     331      <br>
     332
    2497333Polygon reduction for topography and ground plate isosurface. Reduction
    2498334level for buildings can be chosen with parameter cluster_size. (<span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>)<br>
    2499335
    2500336      <br>
    2501 Variables <span style="font-family: Courier New,Courier,monospace;">bc_lr</span> / <span style="font-family: Courier New,Courier,monospace;">bc_ns</span>&nbsp; in most subroutines replaced by LOGICAL variables <span style="font-family: Courier New,Courier,monospace;">bc_lr_cyc</span>,<br>
    2502       <span style="font-family: Courier New,Courier,monospace;">
    2503 bc_ns_cyc</span> for speed optimization. This gives a significant speedup of more than 10%. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">diffusion_u</span>, <span style="font-family: Courier New,Courier,monospace;">diffusion_v</span>, <span style="font-family: Courier New,Courier,monospace;">diffusion_w</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>)<br>
    2504 
    2505       <br>
     337
     338Variables <span style="font-family: Courier New,Courier,monospace;">bc_lr</span>
     339/ <span style="font-family: Courier New,Courier,monospace;">bc_ns</span>&nbsp;
     340in most subroutines replaced by LOGICAL variables <span style="font-family: Courier New,Courier,monospace;">bc_lr_cyc</span>,<br>
     341
     342      <span style="font-family: Courier New,Courier,monospace;">bc_ns_cyc</span>
     343for speed optimization. This gives a significant speedup of more than
     34410%. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     345      <span style="font-family: Courier New,Courier,monospace;">diffusion_u</span>,
     346      <span style="font-family: Courier New,Courier,monospace;">diffusion_v</span>,
     347      <span style="font-family: Courier New,Courier,monospace;">diffusion_w</span>,
     348      <span style="font-family: Courier New,Courier,monospace;">modules</span>)<br>
     349
     350      <br>
     351
    2506352Scripts have been adapted for machine lck (Yonsei Univ.). (<span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">mbuild</span>, <span style="font-family: Courier New,Courier,monospace;">subjob</span>)<br>
    2507       <br>
    2508 Additional timestep criterion in case of simulations with plant canopy. (<span style="font-family: Courier New,Courier,monospace;">timestep</span>)<br>
    2509       <br>
    2510 Check for illegal entries in <span style="font-family: Courier New,Courier,monospace;">section_xy</span>|<span style="font-family: Courier New,Courier,monospace;">xz</span>|<span style="font-family: Courier New,Courier,monospace;">yz</span> that exceed <span style="font-family: Courier New,Courier,monospace;">nz+1</span>|<span style="font-family: Courier New,Courier,monospace;">ny+1</span>|<span style="font-family: Courier New,Courier,monospace;">nx+1</span>. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br>
    2511       <br>
    2512 External pressure gradient can be used as driving force. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">prognostic_equations</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2513       <br>
    2514 New topography case '<span style="font-style: italic;">single_street_canyon</span>'. (<span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">init_grid</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">user_header</span>, <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2515       <br>
    2516 Option to predefine a target bulk velocity for <span style="font-family: Courier New,Courier,monospace;">conserve_volume_flow</span>. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2517       <br>
    2518 Option for user defined 2D data output in xy cross sections at z=<span style="font-family: Courier New,Courier,monospace;">nzb</span>+1. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">user_data_output_2d</span>)<br>
    2519       <br>
    2520 xy cross section output of surface heatfluxes (sensible and latent). (<span style="font-family: Courier New,Courier,monospace;">average_3d_data</span>, <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>, <span style="font-family: Courier New,Courier,monospace;">sum_up_3d_data</span>, <span style="font-family: Courier New,Courier,monospace;">write_3d_binary</span>)<br>
    2521       </td>
    2522       <td style="vertical-align: top;">average_3d_data,
     353
     354      <br>
     355
     356Additional timestep criterion in case of simulations with plant canopy.
     357(<span style="font-family: Courier New,Courier,monospace;">timestep</span>)<br>
     358
     359      <br>
     360
     361Check for illegal entries in <span style="font-family: Courier New,Courier,monospace;">section_xy</span>|<span style="font-family: Courier New,Courier,monospace;">xz</span>|<span style="font-family: Courier New,Courier,monospace;">yz</span> that
     362exceed <span style="font-family: Courier New,Courier,monospace;">nz+1</span>|<span style="font-family: Courier New,Courier,monospace;">ny+1</span>|<span style="font-family: Courier New,Courier,monospace;">nx+1</span>. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br>
     363
     364      <br>
     365
     366External pressure gradient can be used as driving force. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     367      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     368      <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>,
     369      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     370      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     371      <span style="font-family: Courier New,Courier,monospace;">prognostic_equations</span>,
     372      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     373      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     374
     375      <br>
     376
     377New topography case '<span style="font-style: italic;">single_street_canyon</span>'.
     378(<span style="font-family: Courier New,Courier,monospace;">header</span>,
     379      <span style="font-family: Courier New,Courier,monospace;">init_grid</span>,
     380      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     381      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     382      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     383      <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>,
     384      <span style="font-family: Courier New,Courier,monospace;">user_header</span>,
     385      <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>,
     386      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     387
     388      <br>
     389
     390Option to predefine a target bulk velocity for <span style="font-family: Courier New,Courier,monospace;">conserve_volume_flow</span>.
     391(<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     392      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     393      <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>,
     394      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     395      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     396      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     397      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     398
     399      <br>
     400
     401Option for user defined 2D data output in xy cross sections at z=<span style="font-family: Courier New,Courier,monospace;">nzb</span>+1. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     402      <span style="font-family: Courier New,Courier,monospace;">user_data_output_2d</span>)<br>
     403
     404      <br>
     405
     406xy cross section output of surface heatfluxes (sensible and latent). (<span style="font-family: Courier New,Courier,monospace;">average_3d_data</span>,
     407      <span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     408      <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     409      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     410      <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>,
     411      <span style="font-family: Courier New,Courier,monospace;">sum_up_3d_data</span>,
     412      <span style="font-family: Courier New,Courier,monospace;">write_3d_binary</span>)</td>
     413      <td style="vertical-align: top; width: 189px;">average_3d_data,
    2523414check_for_restart, check_parameters, data_output_2d, data_output_3d,
    2524415data_output_dvrp, data_output_profiles, data_output_ptseries,
    … …  
    2530421user_check_parameters, user_data_output_2d, user_data_output_dvrp,
    2531422user_header, user_init_grid, write_3d_binary, write_var_list<br>
    2532       <br>
    2533       <span style="font-weight: bold;">new:</span> set_particle_attributes, set_slicer_attributes_dvrp<br>
    2534       <br>
    2535       </td>
    2536     </tr>
    2537     <tr>
    2538       <td style="vertical-align: top;"><br>
    2539       </td>
    2540       <td style="vertical-align: top;"><br>
    2541       </td>
    2542       <td style="vertical-align: top;"><br>
    2543       </td>
    2544       <td style="vertical-align: top;">C<br>
    2545       </td>
    2546       <td style="vertical-align: top;">Output of messages replaced by message handling routine. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, <span style="font-family: Courier New,Courier,monospace;">advec_s_bc</span>, <span style="font-family: Courier New,Courier,monospace;">buoyancy</span>, <span style="font-family: Courier New,Courier,monospace;">calc_spectra</span>, <span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>, <span style="font-family: Courier New,Courier,monospace;">check_open</span>, <span style="font-family: Courier New,Courier,monospace;">coriolis</span>, <span style="font-family: Courier New,Courier,monospace;">cpu_log</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>, <span style="font-family: Courier New,Courier,monospace;">fft_xy</span>, <span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>,&nbsp; <span style="font-family: Courier New,Courier,monospace;">init_1d_model</span>, <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>, <span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>, <span style="font-family: Courier New,Courier,monospace;">init_grid</span>, <span style="font-family: Courier New,Courier,monospace;">init_particles</span>, <span style="font-family: Courier New,Courier,monospace;">init_pegrid</span>, <span style="font-family: Courier New,Courier,monospace;">netcdf</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">plant_canopy_model</span>, <span style="font-family: Courier New,Courier,monospace;">poisfft_hybrid</span>, <span style="font-family: Courier New,Courier,monospace;">poismg</span>, <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>, <span style="font-family: Courier New,Courier,monospace;">temperton_fft</span>, <span style="font-family: Courier New,Courier,monospace;">timestep</span>, <span style="font-family: Courier New,Courier,monospace;">user_actions</span>, <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>, <span style="font-family: Courier New,Courier,monospace;">user_dvrp_coltab</span>, <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, <span style="font-family: Courier New,Courier,monospace;">user_init_plant_canopy</span>, <span style="font-family: Courier New,Courier,monospace;">user_parin</span>, <span style="font-family: Courier New,Courier,monospace;">user_read_restart_data</span>, <span style="font-family: Courier New,Courier,monospace;">user_spectra</span>)<br>
    2547 
    2548       <br>
    2549 Output of NetCDF messages with aid of message handling routine. (<span style="font-family: Courier New,Courier,monospace;">check_open</span>, <span style="font-family: Courier New,Courier,monospace;">close_file</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>,&nbsp; <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>, <span style="font-family: Courier New,Courier,monospace;">netcdf</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br>
    2550 
    2551       <br>
    2552 
    2553 __lcmuk changed to __lc to avoid problems with Intel compiler on sgi-ice. (<span style="font-family: Courier New,Courier,monospace;">poisfft</span>)<br>
    2554       <br>
    2555 For extended NetCDF files, the updated title attribute includes an update of time_average_text where appropriate. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
    2556       <br>
     423
     424      <br>
     425
     426      <span style="font-weight: bold;">new:</span>
     427set_particle_attributes, set_slicer_attributes_dvrp</td>
     428    </tr>
     429    <tr>
     430      <td style="vertical-align: top; width: 27px;"><br>
     431      </td>
     432      <td style="vertical-align: top; width: 38px;"><br>
     433      </td>
     434      <td style="vertical-align: top; width: 42px;"><br>
     435      </td>
     436      <td style="vertical-align: top; width: 40px;"><br>
     437      </td>
     438      <td style="vertical-align: top; width: 27px;">C<br>
     439      </td>
     440      <td style="vertical-align: top; width: 497px;">Output of messages replaced by
     441message handling routine. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>,
     442      <span style="font-family: Courier New,Courier,monospace;">advec_s_bc</span>,
     443      <span style="font-family: Courier New,Courier,monospace;">buoyancy</span>,
     444      <span style="font-family: Courier New,Courier,monospace;">calc_spectra</span>,
     445      <span style="font-family: Courier New,Courier,monospace;">check_for_restart</span>,
     446      <span style="font-family: Courier New,Courier,monospace;">check_open</span>,
     447      <span style="font-family: Courier New,Courier,monospace;">coriolis</span>,
     448      <span style="font-family: Courier New,Courier,monospace;">cpu_log</span>,
     449      <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     450      <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>,
     451      <span style="font-family: Courier New,Courier,monospace;">data_output_dvrp</span>,
     452      <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>,
     453      <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>,
     454      <span style="font-family: Courier New,Courier,monospace;">fft_xy</span>,
     455      <span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>,
     456      <span style="font-family: Courier New,Courier,monospace;">header</span>,&nbsp;
     457      <span style="font-family: Courier New,Courier,monospace;">init_1d_model</span>,
     458      <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>,
     459      <span style="font-family: Courier New,Courier,monospace;">init_dvrp</span>,
     460      <span style="font-family: Courier New,Courier,monospace;">init_grid</span>,
     461      <span style="font-family: Courier New,Courier,monospace;">init_particles</span>,
     462      <span style="font-family: Courier New,Courier,monospace;">init_pegrid</span>,
     463      <span style="font-family: Courier New,Courier,monospace;">netcdf</span>,
     464      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     465      <span style="font-family: Courier New,Courier,monospace;">plant_canopy_model</span>,
     466      <span style="font-family: Courier New,Courier,monospace;">poisfft_hybrid</span>,
     467      <span style="font-family: Courier New,Courier,monospace;">poismg</span>,
     468      <span style="font-family: Courier New,Courier,monospace;">read_3d_binary</span>,
     469      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     470      <span style="font-family: Courier New,Courier,monospace;">surface_coupler</span>,
     471      <span style="font-family: Courier New,Courier,monospace;">temperton_fft</span>,
     472      <span style="font-family: Courier New,Courier,monospace;">timestep</span>,
     473      <span style="font-family: Courier New,Courier,monospace;">user_actions</span>,
     474      <span style="font-family: Courier New,Courier,monospace;">user_data_output_dvrp</span>,
     475      <span style="font-family: Courier New,Courier,monospace;">user_dvrp_coltab</span>,
     476      <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>,
     477      <span style="font-family: Courier New,Courier,monospace;">user_init_plant_canopy</span>,
     478      <span style="font-family: Courier New,Courier,monospace;">user_parin</span>,
     479      <span style="font-family: Courier New,Courier,monospace;">user_read_restart_data</span>,
     480      <span style="font-family: Courier New,Courier,monospace;">user_spectra</span>)<br>
     481
     482      <br>
     483
     484Output of NetCDF messages with aid of message handling routine. (<span style="font-family: Courier New,Courier,monospace;">check_open</span>,
     485      <span style="font-family: Courier New,Courier,monospace;">close_file</span>,
     486      <span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     487      <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>,
     488      <span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>,
     489      <span style="font-family: Courier New,Courier,monospace;">data_output_ptseries</span>,
     490      <span style="font-family: Courier New,Courier,monospace;">data_output_spectra</span>,&nbsp;
     491      <span style="font-family: Courier New,Courier,monospace;">data_output_tseries</span>,
     492      <span style="font-family: Courier New,Courier,monospace;">netcdf</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br>
     493
     494      <br>
     495
     496__lcmuk changed to __lc to avoid problems with Intel compiler on
     497sgi-ice. (<span style="font-family: Courier New,Courier,monospace;">poisfft</span>)<br>
     498
     499      <br>
     500
     501For extended NetCDF files, the updated title attribute includes an
     502update of time_average_text where appropriate. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
     503
     504      <br>
     505
    2557506In case of restart runs without extension, initial profiles are not
    2558507written to NetCDF-file anymore. So far, time axis always started at
    2559 t=0. (<span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2560       <br>
    2561       <span style="font-family: Courier New,Courier,monospace;">initializing_actions</span>='<span style="font-style: italic;">read_data_for_recycling</span>' renamed to '<span style="font-style: italic;">cyclic_fill</span>'. A cyclic fill can now <br>
    2562 be used independent of <span style="font-family: Courier New,Courier,monospace;">turbulent_inflow</span>. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
    2563       <br>
     508t=0. (<span style="font-family: Courier New,Courier,monospace;">data_output_profiles</span>,
     509      <span style="font-family: Courier New,Courier,monospace;">modules</span>,
     510      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     511      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     512
     513      <br>
     514
     515      <span style="font-family: Courier New,Courier,monospace;">initializing_actions</span>='<span style="font-style: italic;">read_data_for_recycling</span>' renamed to
     516'<span style="font-style: italic;">cyclic_fill</span>'. A cyclic fill
     517can now <br>
     518
     519be used independent of <span style="font-family: Courier New,Courier,monospace;">turbulent_inflow</span>.
     520(<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     521      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     522      <span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
     523
     524      <br>
     525
    25645262 NetCDF error numbers changed. (<span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>)<br>
    2565       <br>
     527
     528      <br>
     529
    2566530A link to the webspage appendix_a.html is printed for further
    2567531information about possible reasons of the error that appeared. (message)<br>
    2568       <br>
     532
     533      <br>
     534
    2569535Temperature gradient criterion for estimating the boundary layer height
    2570536replaced by the gradient criterion of Sullivan et al. (1998). (<span style="font-family: Courier New,Courier,monospace;">flow_statistics</span>)<br>
    2571       <br>
    2572 NetCDF unit attribute in timeseries output in case of statistic regions added. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
    2573       <br>
    2574 Maximum number of tails is calculated from maximum number of particles and <span style="font-family: Courier New,Courier,monospace;">skip_particles_for_tail</span>. (<span style="font-family: Courier New,Courier,monospace;">init_particles</span>)<br>
    2575       <br>
    2576 Value of <span style="font-family: Courier New,Courier,monospace;">vertical_particle_advection</span> is allowed to differ for each particle group. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">modules</span>) <br>
    2577       <br>
    2578 First constant in array <span style="font-family: Courier New,Courier,monospace;">den</span> also defined as type double. (<span style="font-family: Courier New,Courier,monospace;">eqn_state_seawater</span>)<br>
    2579       <br>
    2580 Parameter <span style="font-family: Courier New,Courier,monospace;">dvrp_psize</span> moved from <span style="font-family: Courier New,Courier,monospace;">particles_par</span> to <span style="font-family: Courier New,Courier,monospace;">dvrp_graphics_par</span>. (<span style="font-family: Courier New,Courier,monospace;">package_parin</span>)<br>
    2581       <br>
    2582       <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span> moved from <span style="font-family: Courier New,Courier,monospace;">userpar</span> to <span style="font-family: Courier New,Courier,monospace;">inipar</span> (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">header</span>, <span style="font-family: Courier New,Courier,monospace;">parin</span>, <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>, <span style="font-family: Courier New,Courier,monospace;">user_header</span>, <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>, <span style="font-family: Courier New,Courier,monospace;">user_parin</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2583       <br>
    2584 Default value of <span style="font-family: Courier New,Courier,monospace;">grid_matching</span> changed to '<span style="font-style: italic;">strict</span>'. (<span style="font-family: Courier New,Courier,monospace;">modules</span>)<br>
    2585       <br>
    2586 Adjustments for runs on lcxt4 (necessary due to a software update on CRAY) and for coupled runs on ibmy. (<span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">subjob</span>)<br>
    2587       </td>
    2588       <td style="vertical-align: top;">advec_particles, advec_s_bc,
     537
     538      <br>
     539
     540NetCDF unit attribute in timeseries output in case of statistic regions
     541added. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
     542
     543      <br>
     544
     545Maximum number of tails is calculated from maximum number of particles
     546and <span style="font-family: Courier New,Courier,monospace;">skip_particles_for_tail</span>.
     547(<span style="font-family: Courier New,Courier,monospace;">init_particles</span>)<br>
     548
     549      <br>
     550
     551Value of <span style="font-family: Courier New,Courier,monospace;">vertical_particle_advection</span>
     552is allowed to differ for each particle group. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>,
     553      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     554      <span style="font-family: Courier New,Courier,monospace;">modules</span>)
     555      <br>
     556
     557      <br>
     558
     559First constant in array <span style="font-family: Courier New,Courier,monospace;">den</span> also
     560defined as type double. (<span style="font-family: Courier New,Courier,monospace;">eqn_state_seawater</span>)<br>
     561
     562      <br>
     563
     564Parameter <span style="font-family: Courier New,Courier,monospace;">dvrp_psize</span>
     565moved from <span style="font-family: Courier New,Courier,monospace;">particles_par</span>
     566to <span style="font-family: Courier New,Courier,monospace;">dvrp_graphics_par</span>.
     567(<span style="font-family: Courier New,Courier,monospace;">package_parin</span>)<br>
     568
     569      <br>
     570
     571      <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span>
     572moved from <span style="font-family: Courier New,Courier,monospace;">userpar</span>
     573to <span style="font-family: Courier New,Courier,monospace;">inipar</span>
     574(<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>,
     575      <span style="font-family: Courier New,Courier,monospace;">header</span>,
     576      <span style="font-family: Courier New,Courier,monospace;">parin</span>,
     577      <span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     578      <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span>,
     579      <span style="font-family: Courier New,Courier,monospace;">user_header</span>,
     580      <span style="font-family: Courier New,Courier,monospace;">user_init_grid</span>,
     581      <span style="font-family: Courier New,Courier,monospace;">user_parin</span>,
     582      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     583
     584      <br>
     585
     586Default value of <span style="font-family: Courier New,Courier,monospace;">grid_matching</span>
     587changed to '<span style="font-style: italic;">strict</span>'. (<span style="font-family: Courier New,Courier,monospace;">modules</span>)<br>
     588
     589      <br>
     590
     591Adjustments for runs on lcxt4 (necessary due to a software update on
     592CRAY) and for coupled runs on ibmy. (<span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">subjob</span>)</td>
     593      <td style="vertical-align: top; width: 189px;">advec_particles,
     594advec_s_bc,
    2589595buoyancy, calc_spectra, check_for_restart, check_open,
    2590596check_parameters, close_file, coriolis, cpu_log, data_output_2d,
    … …  
    2595601message, mrun, netcdf, package_parin, parin, plant_canopy_model,
    2596602poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, subjob,
    2597 surface_coupler, temperton_fft, timestep, user_actions,user_check_parameters, user_data_output_dvrp, user_dvrp_coltab, user_header, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list <br>
    2598       </td>
    2599     </tr>
    2600     <tr>
    2601       <td style="vertical-align: top;"><br>
    2602       </td>
    2603       <td style="vertical-align: top;"><br>
    2604       </td>
    2605       <td style="vertical-align: top;"><br>
    2606       </td>
    2607       <td style="vertical-align: top;">E<br>
    2608       </td>
    2609       <td style="vertical-align: top;">Bugfix: Initial hydrostatic pressure profile in case of ocean runs is now calculated in 5 iteration steps. (<span style="font-family: Courier New,Courier,monospace;">init_ocean</span>)<br>
    2610       <br>
    2611 Bugfix: wrong sign in buoyancy production of ocean part in case of not using the reference density (only in 3D routine <span style="font-family: Courier New,Courier,monospace;">production_e</span>). (<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br>
    2612       <br>
     603surface_coupler, temperton_fft, timestep,
     604user_actions,user_check_parameters, user_data_output_dvrp,
     605user_dvrp_coltab, user_header, user_init_grid, user_init_plant_canopy,
     606user_parin, user_read_restart_data, user_spectra, write_var_list </td>
     607    </tr>
     608    <tr>
     609      <td style="vertical-align: top; width: 27px;"><br>
     610      </td>
     611      <td style="vertical-align: top; width: 38px;"><br>
     612      </td>
     613      <td style="vertical-align: top; width: 42px;"><br>
     614      </td>
     615      <td style="vertical-align: top; width: 40px;"><br>
     616      </td>
     617      <td style="vertical-align: top; width: 27px;">E<br>
     618      </td>
     619      <td style="vertical-align: top; width: 497px;">Bugfix: Initial hydrostatic
     620pressure profile in case of ocean runs is now calculated in 5 iteration
     621steps. (<span style="font-family: Courier New,Courier,monospace;">init_ocean</span>)<br>
     622
     623      <br>
     624
     625Bugfix: wrong sign in buoyancy production of ocean part in case of not
     626using the reference density (only in 3D routine <span style="font-family: Courier New,Courier,monospace;">production_e</span>).
     627(<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br>
     628
     629      <br>
     630
    2613631Bugfix: output of averaged 2d/3d quantities requires that an avaraging
    2614632interval has been set, respective error message is included. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br>
    2615       <br>
    2616 Bugfix: Output on unit 14 only if requested by <span style="font-family: Courier New,Courier,monospace;">write_binary</span>. (<span style="font-family: Courier New,Courier,monospace;">user_last_actions</span>)<br>
    2617       <br>
    2618 Bugfix to avoid zero division by <span style="font-family: Courier New,Courier,monospace;">km_neutral</span>. (<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br>
    2619       <br>
     633
     634      <br>
     635
     636Bugfix: Output on unit 14 only if requested by <span style="font-family: Courier New,Courier,monospace;">write_binary</span>.
     637(<span style="font-family: Courier New,Courier,monospace;">user_last_actions</span>)<br>
     638
     639      <br>
     640
     641Bugfix to avoid zero division by <span style="font-family: Courier New,Courier,monospace;">km_neutral</span>.
     642(<span style="font-family: Courier New,Courier,monospace;">production_e</span>)<br>
     643
     644      <br>
     645
    2620646Bugfix for extended NetCDF files: In order to avoid 'data mode' errors
    2621 if updated attributes are larger than their original size, <span style="font-family: Courier New,Courier,monospace;">NF90_PUT_ATT</span> is called in 'define mode' enclosed by <span style="font-family: Courier New,Courier,monospace;">NF90_REDEF</span> and <span style="font-family: Courier New,Courier,monospace;">NF90_ENDDEF</span>
     647if updated attributes are larger than their original size, <span style="font-family: Courier New,Courier,monospace;">NF90_PUT_ATT</span>
     648is called in 'define mode' enclosed by <span style="font-family: Courier New,Courier,monospace;">NF90_REDEF</span>
     649and <span style="font-family: Courier New,Courier,monospace;">NF90_ENDDEF</span>
    2622650calls. This implies a possible performance loss; an alternative
    2623651strategy would be to ensure equal attribute size in a job chain. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
    2624       <br>
     652
     653      <br>
     654
    2625655Bugfix: correction of initial volume flow for non-flat topography. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
    2626       <br>
     656
     657      <br>
     658
    2627659Bugfix: zero initialization of arrays within buildings for '<span style="font-style: italic;">cyclic_fill</span>'. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
    2628       <br>
    2629 Bugfix: <span style="font-family: Courier New,Courier,monospace;">to_be_resorted</span> =&gt; <span style="font-family: Courier New,Courier,monospace;">s_av</span> for time-averaged scalars. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>, <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>)<br>
    2630       <br>
    2631 Bugfix: avoid that <span style="font-family: Courier New,Courier,monospace;">ngp_2dh_s_inner</span> becomes zero. (<span style="font-family: Courier New,Courier,monospace;">init_3_model</span>)<br>
    2632       <br>
     660
     661      <br>
     662
     663Bugfix: <span style="font-family: Courier New,Courier,monospace;">to_be_resorted</span>
     664=&gt; <span style="font-family: Courier New,Courier,monospace;">s_av</span>
     665for time-averaged scalars. (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>,
     666      <span style="font-family: Courier New,Courier,monospace;">data_output_3d</span>)<br>
     667
     668      <br>
     669
     670Bugfix: avoid that <span style="font-family: Courier New,Courier,monospace;">ngp_2dh_s_inner</span>
     671becomes zero. (<span style="font-family: Courier New,Courier,monospace;">init_3_model</span>)<br>
     672
     673      <br>
     674
    2633675Typographical error: unit of wpt in dots_unit. (<span style="font-family: Courier New,Courier,monospace;">modules</span>)<br>
    2634       <br>
     676
     677      <br>
     678
    2635679Bugfix: error in check, if particles moved further than one subdomain
    2636680length. This check must not be applied for newly released particles. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>)<br>
    2637       <br>
     681
     682      <br>
     683
    2638684Bugfix: several tail counters are initialized, <span style="font-family: Courier New,Courier,monospace;">particle_tail_coordinates</span>
    2639685is only written to file if its third index is &gt; 0, arrays for tails
    2640686are allocated with a minimum size of 10 tails if there is no tail
    2641 initially. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>, <span style="font-family: Courier New,Courier,monospace;">init_particles</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br>
    2642       <br>
     687initially. (<span style="font-family: Courier New,Courier,monospace;">advec_particles</span>,
     688      <span style="font-family: Courier New,Courier,monospace;">init_particles</span><span style="font-family: Courier New,Courier,monospace;"></span>)<br>
     689
     690      <br>
     691
    2643692Bugfix: pressure included for profile output. (<span style="font-family: Courier New,Courier,monospace;">check_parameters</span>)<br>
    2644       <br>
    2645 Bugfix: Type of <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span> changed to default <span style="font-family: Courier New,Courier,monospace;">INTEGER</span> on NEC machines. (<span style="font-family: Courier New,Courier,monospace;">cpu_log</span>)<br>
    2646       <br>
    2647 Bugfix: output of particle time series only if particle advection is switched on. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)<br>
    2648       <br>
    2649 Bugfix: qsws was calculated in case of <span style="font-family: Courier New,Courier,monospace;">constant heatflux</span> = <span style="font-family: Courier New,Courier,monospace;">.FALSE.</span>. (<span style="font-family: Courier New,Courier,monospace;">prandtl_fluxes</span>)<br>
    2650       <br>
    2651 Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0). (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>)<br>
    2652       <br>
     693
     694      <br>
     695
     696Bugfix: Type of <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span>
     697changed to default <span style="font-family: Courier New,Courier,monospace;">INTEGER</span> on
     698NEC machines. (<span style="font-family: Courier New,Courier,monospace;">cpu_log</span>)<br>
     699
     700      <br>
     701
     702Bugfix: output of particle time series only if particle advection is
     703switched on. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)<br>
     704
     705      <br>
     706
     707Bugfix: qsws was calculated in case of <span style="font-family: Courier New,Courier,monospace;">constant heatflux</span>
     708= <span style="font-family: Courier New,Courier,monospace;">.FALSE.</span>.
     709(<span style="font-family: Courier New,Courier,monospace;">prandtl_fluxes</span>)<br>
     710
     711      <br>
     712
     713Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and
     714z0). (<span style="font-family: Courier New,Courier,monospace;">data_output_2d</span>)<br>
     715
     716      <br>
     717
    2653718Typographical errors. (<span style="font-family: Courier New,Courier,monospace;">netcdf</span>)<br>
    2654       <br>
    2655 If the inversion height calculated by the prerun is zero, inflow_damping_height must be explicitly specified. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
    2656       <br>
     719
     720      <br>
     721
     722If the inversion height calculated by the prerun is zero,
     723inflow_damping_height must be explicitly specified. (<span style="font-family: Courier New,Courier,monospace;">init_3d_model</span>)<br>
     724
     725      <br>
     726
    2657727Small bugfix concerning 3d 64bit netcdf output format. (<span style="font-family: Courier New,Courier,monospace;">header</span>)<br>
    2658       <br>
     728
     729      <br>
     730
    2659731Bugfix: <span style="font-family: Courier New,Courier,monospace;">dt_fixed</span>
    2660732removed from the restart file, because otherwise, no change from a
    2661 fixed to a variable timestep would be possible in restart runs. (<span style="font-family: Courier New,Courier,monospace;">read_var_list</span>, <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
    2662       <br>
    2663 Bugfix: initial setting of <span style="font-family: Courier New,Courier,monospace;">time_coupling</span> in coupled restart runs. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)<br>
    2664       </td>
    2665       <td style="vertical-align: top;">advec_particles,
     733fixed to a variable timestep would be possible in restart runs. (<span style="font-family: Courier New,Courier,monospace;">read_var_list</span>,
     734      <span style="font-family: Courier New,Courier,monospace;">write_var_list</span>)<br>
     735
     736      <br>
     737
     738Bugfix: initial setting of <span style="font-family: Courier New,Courier,monospace;">time_coupling</span>
     739in coupled restart runs. (<span style="font-family: Courier New,Courier,monospace;">time_integration</span>)</td>
     740      <td style="vertical-align: top; width: 189px;">advec_particles,
    2666741check_parameters, cpu_log, data_output_2d, data_output_3d, header,
    2667742init_3d_model, init_particles, init_ocean, modules, netcdf,
    2668743prandtl_fluxes, production_e, read_var_list, time_integration,
    2669744user_last_actions, write_var_list<br>
    2670       <br>
    2671       </td>
    2672     </tr>
    2673 
    2674 </tbody>
    2675 </table>&nbsp;<b><blink>Attention:</blink></b>
    2676 If<tt> make </tt>is not used
    2677 for
    2678 compiling,
    2679 <b>all routines</b> have to be re-compiled after every
    2680 change
    2681 to <b>modules.f90!</b>
    2682 <br>&nbsp;
     745
     746      </td>
     747    </tr>
     748    <tr>
     749      <td style="vertical-align: top; width: 27px;">02/02/09<br>
     750      </td>
     751      <td style="vertical-align: top; width: 38px;">SR<br>
     752      </td>
     753      <td style="vertical-align: top; width: 42px;">228<br>
     754      </td>
     755      <td style="vertical-align: top; width: 40px;">3.6<br>
     756      </td>
     757      <td style="vertical-align: top; width: 27px;">N<br>
     758      </td>
     759      <td style="vertical-align: top; width: 497px;">This
     760release contains further additions, changes, and bugfixes for the
     761SGI-ICE system, as well as important changes like the splitting of the
     762user-interface into single files, a complete revision of the
     763pre-compiling mechanism allowing to use different make-depositories
     764simultaneously, and a revision of the reading-mechanism from restart
     765files, which has no more restrictions in case that the previous and
     766current run have different domain/subdomain sizes. A new handling of
     767all kind of output messages is introduced with this release and will be
     768applied to all existing messages within the next releases.<br>
     769
     770      <br>
     771
     772      <span style="font-weight: bold;">New features are:</span><br style="font-weight: bold;">
     773
     774      <br>
     775
     776Restart runs on SGI-ICE are working. (mrun)<br>
     777
     7782d-decomposition is default on SGI-ICE systems. (init_pegrid)<br>
     779
     780      <br>
     781
     782Ocean-atmosphere coupling realized with MPI-1. mrun adjusted for this
     783case (-Y option). Check that PALM is called with <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option
     784"<span style="font-style: italic;">-K parallel</span>" for coupling.
     785Adjustments in <span style="font-family: Courier New,Courier,monospace;">mrun</span>, <span style="font-family: Courier New,Courier,monospace;">mbuild</span>, and
     786      <span style="font-family: Courier New,Courier,monospace;">subjob</span>
     787for lcxt4.<br>
     788
     789      <br>
     790
     791DVRP arguments changed to single precision, mode pathlines added.<br>
     792
     793      <br>
     794
     795User can add additional routines in files <span style="font-family: Courier New,Courier,monospace;">user_additional_routines</span>.<br>
     796
     797      <br>
     798
     799User can check user parameters and deduce further quantities in <span style="font-family: Courier New,Courier,monospace;">user_check_parameters</span></td>
     800      <td style="vertical-align: top; width: 189px;">check_for_restart,
     801check_parameters, data_output_dvrp, init_dvrp, init_pegrid, local_stop,
     802modules, package_parin, palm, surface_coupler, timestep<br>
     803
     804      <br>
     805
     806Makefile,&nbsp;mbuild, mrun, subjob<br>
     807
     808      <br>
     809
     810      <span style="font-weight: bold;">new:</span><br>
     811
     812init_coupling, user_additional_routines, user_check_parameters</td>
     813    </tr>
     814    <tr>
     815      <td style="vertical-align: top; width: 27px;"><br>
     816      </td>
     817      <td style="vertical-align: top; width: 38px;"><br>
     818      </td>
     819      <td style="vertical-align: top; width: 42px;"><br>
     820      </td>
     821      <td style="vertical-align: top; width: 40px;"><br>
     822      </td>
     823      <td style="vertical-align: top; width: 27px;">C<br>
     824      </td>
     825      <td style="vertical-align: top; width: 497px;">User interface has been
     826split into single files.<br>
     827
     828      <br>
     829
     830Type of variables <span style="font-family: Courier New,Courier,monospace;">count</span> and <span style="font-family: Courier New,Courier,monospace;">count_rate</span>
     831changed to INTEGER(8) in order to avoid "out of range" problems, which
     832result in measured negative time intervals. (cpu_log, local_tremain,
     833local_tremain_ini)<br>
     834
     835      <br>
     836
     837Reading mechanism from restart files
     838completely revised. The subdomain/total domain size is now allowed to
     839vary arbitrarily between the current and previous run. (read_var_list,
     840read_3d_binary, user_read_restart_data)<br>
     841
     842      <br>
     843
     844Precompilation mechanism (<span style="font-family: Courier New,Courier,monospace;">mbuild</span>)
     845completely revised: the source-tarfile remains in the source directory (<span style="font-family: Courier New,Courier,monospace;">trunk/SOURCE</span>).
     846One depository per block (given in the config-file) is created. Always
     847all files from the source directory are copied to the respective
     848depository. No additional file checks are done any more (mrun version
     8492.1). The depository name used contains the conditions given by <span style="font-family: Courier New,Courier,monospace;">mrun</span>-option
     850"<span style="font-family: Courier New,Courier,monospace;">-K</span>".
     851(mbuild, mrun)<br>
     852
     853      <br>
     854
     855Output messages (including required stop of execution) can now be
     856handled with the new subroutine&nbsp;<span style="font-family: Courier New,Courier,monospace;">message</span>.
     857All output messages will be replaced by this routine step by step
     858within the next revisions.<br>
     859
     860      <br>
     861
     862Neumann boundary condition at <span style="font-family: Courier New,Courier,monospace;">k=nzb</span> is
     863explicitly set for better reading, although this has been already done
     864in boundary_conds. (advec_s_bc)<br>
     865
     866      <br>
     867
     868Origin of the xy-coordinate system shifted from the center of the first
     869grid cell (indices <span style="font-family: Courier New,Courier,monospace;">i=0</span>, <span style="font-family: Courier New,Courier,monospace;">j=0</span>) to the
     870south-left corner of this cell. (netcdf) Topography definition
     871according to new user parameter <span style="font-family: Courier New,Courier,monospace;">topography_grid_convention</span>.
     872(init_grid, modules, user_header, user_init_grid, user_parin)</td>
     873      <td style="vertical-align: top; width: 189px;">advec_s_bc,
     874check_parameters, cpu_log, init_grid, local_stop, local_tremain,
     875local_tremain_ini, modules, netcdf, read_3d_binary, read_var_list,
     876user_read_restart_data<br>
     877
     878      <br>
     879
     880Makefile, mbuild, mrun<br>
     881
     882      <br>
     883
     884      <span style="font-weight: bold;">removed:</span><br>
     885
     886user_interface<br>
     887
     888      <br>
     889
     890      <span style="font-weight: bold;">new:</span><br>
     891
     892message,
     893user_3d_data_averaging, user_actions, user_advec_particles,
     894user_check_data_output, user_check_data_output_pr, user_data_output_2d,
     895user_data_output_3d, user_data_output_dvrp, user_define_netcdf_grid,
     896user_dvrp_coltab, user_header, user_init_3d_model, user_init,
     897user_init_grid, user_init_particles, user_init_plant_canopy,
     898user_last_actions, user_parin, user_parin, user_particle_attributes,
     899user_read_restart_data, user_spectra, user_statistics</td>
     900    </tr>
     901    <tr>
     902      <td style="vertical-align: top; width: 27px;"><br>
     903      </td>
     904      <td style="vertical-align: top; width: 38px;"><br>
     905      </td>
     906      <td style="vertical-align: top; width: 42px;"><br>
     907      </td>
     908      <td style="vertical-align: top; width: 40px;"><br>
     909      </td>
     910      <td style="vertical-align: top; width: 27px;">E<br>
     911      </td>
     912      <td style="vertical-align: top; width: 497px;">Bugfix: array <span style="font-family: Courier New,Courier,monospace;">d</span> is
     913reallocated in case that multigrid is used. (calc_spectra)<br>
     914
     915      <br>
     916
     917Bugfixes for nonparallel execution. (check_for_restart, cpu_statistics,
     918inflow_turbulence,&nbsp;timestep)<br>
     919
     920      <br>
     921
     922Size of <span style="font-family: Courier New,Courier,monospace;">pf3d
     923      </span>adjusted to the required output size (1 gridpoint less,
     924along all three dimensions), because output of a subset of the data (<span style="font-family: Courier New,Courier,monospace;">pf3d(nxa:nxe...)</span>)
     925in the NF90_PUT_VAR statement caused segmentation fault with the INTEL
     926compiler. (combine_plot_fields)<br>
     927
     928      <br>
     929
     930Bugfix: error in <span style="font-family: Courier New,Courier,monospace;">zu</span> index in
     931case of <span style="font-family: Courier New,Courier,monospace;">section_xy=-1</span>.
     932(header)<br>
     933
     934      <br>
     935
     936Inconsistency
     937removed: as the thermal stratification is not taken into account for
     938the evaluation of the wall fluxes at vertical walls, the eddy viscosity
     939      <span style="font-family: Courier New,Courier,monospace;">km</span>
     940must not be used for the evaluation of the velocity gradients <span style="font-family: Courier New,Courier,monospace;">dudy</span>, <span style="font-family: Courier New,Courier,monospace;">dwdy</span>, <span style="font-family: Courier New,Courier,monospace;">dvdx</span> and <span style="font-family: Courier New,Courier,monospace;">dwdx</span>.
     941(production_e)<br>
     942
     943      <br>
     944
     945Bugfix in calculating <span style="font-family: Courier New,Courier,monospace;">k</span> index in
     946case of oceans runs. (sort_particles)<br>
     947
     948      <br>
     949
     950Bugfix: no output of particle concentration and radius unless particles
     951have been started. (data_output_2d)<br>
     952
     953      <br>
     954
     955Bugfix: reading of <span style="font-family: Courier New,Courier,monospace;">spectrum_x|y</span>
     956from restart files ignored if total numbers of grid points do not
     957match. (read_3d_binary)<br>
     958
     959      <br>
     960
     961Bugfix: abort in case that absolute temperature is below zero.
     962(init_cloud_physics)</td>
     963      <td style="vertical-align: top; width: 189px;">advec_particles,
     964calc_spectra, check_for_restart, cpu_statistics, data_output_2d,
     965header, inflow_turbulence, init_cloud_physics, production_e,
     966read_3d_binary, timestep<br>
     967
     968      <br>
     969
     970combine_plot_fields</td>
     971    </tr>
     972  </tbody>
     973</table>
     974<b><blink></blink></b><br>&nbsp;
    2683975<br>&nbsp;
    2684976<h2><a name="Kapitel2.0"></a>2.0&nbsp; How
    … …  
    2700992<br>&nbsp;
    2701993</p><ul> <li> <a name="UPS"></a>upstream-spline
    2702 advection scheme ( <a href="Upstream_Spline/ups.ps">.ps</a>
    2703 )</li> <li> <a name="Cloud_physics"></a>cloud
    2704 physics module ( <a href="Cloud_physics/cloud_physics.pdf">.pdf</a>
    2705 )</li> <li> <a name="Bitkompression"></a>Datenkompression
    2706 mit dem Verfahren
    2707 der <a href="Bitkompression/kompression.html">Bitverschiebung</a></li>
    2708 <li> <a name="Runge-kutta"></a>Runge-Kutta
    2709 time integration scheme ( <a href="numerik.heiko/zeitschrittverfahren.pdf">.pdf</a>
    2710 )</li>
     994advection scheme ( <a href="methods/upstream_spline/ups.pdf">.pdf</a>
     995, only in German)</li> <li> <a name="Cloud_physics"></a>cloud
     996physics module ( <a href="methods/cloud_physics/cloud_physics.pdf">.pdf</a>
     997)</li>
     998  <li> <a name="Bitkompression"></a>data compression with <a href="methods/bit_compression/bit_compression.html">bit shifting method</a> (only in German)<br>
     999  </li>
     1000  <li>Runge-Kutta
     1001time integration scheme ( <a href="methods/runge_kutta/runge_kutta.pdf">.pdf</a>
     1002, only in German)</li>
     1003
    27111004</ul><br>
    27121005&nbsp;

  • palm/trunk/SOURCE/CURRENT_MODIFICATIONS

    r480 r481  
    2323Changed:
    2424-------
    25 parallel make implemented (mbuild, mrun)
    26 
    27252d-decomposition is default for Cray-XT machines (init_pegrid)
    2826
    … …  
    3634Rogers and Yau. (collision_efficiency)
    3735
    38 advec_particles, collision_efficiency, init_3d_model, init_pegrid, mbuild, modules, mrun
     36advec_particles, collision_efficiency, init_3d_model, init_pegrid, modules
    3937
    4038
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