Changeset 4480


Ignore:
Timestamp:
Mar 31, 2020 2:00:27 PM (13 months ago)
Author:
Giersch
Message:

module load command in config files revised for intel and intel mpi compiler

Location:
palm/trunk/SCRIPTS
Files:
4 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/SCRIPTS/.palm.config.atosb

    r4439 r4480  
    2626%compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/intel.18/4.7.3/skl/include/ -I /sw/numerics/fftw3/impi/intel/3.3.8/skl/include/
    2727%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L /sw/numerics/fftw3/impi/intel/3.3.8/skl/lib -lfftw3
    28 %module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf-parallel/impi/intel fftw3/impi/intel
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel/18.0.6 impi/2018.5 netcdf-parallel/impi/intel fftw3/impi/intel
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
     
    3232
    3333# BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
    34 BD:#!/bin/bash 
     34BD:#!/bin/bash
    3535BD:#SBATCH --job-name={{job_id}}
    3636BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
    37 BD:#SBATCH --ntasks={{mpi_tasks}} 
     37BD:#SBATCH --ntasks={{mpi_tasks}}
    3838BD:#SBATCH --nodes={{nodes}}
    3939BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
     
    5454
    5555#----------------------------------------------------------------------------
    56 # INPUT-commands, executed before running PALM - lines must start with "IC:" 
     56# INPUT-commands, executed before running PALM - lines must start with "IC:"
    5757#----------------------------------------------------------------------------
    5858# my settings
     
    6060IC:export I_MPI_PMI_LIBRARY=libpmi.so
    6161IC:export I_MPI_FABRICS=shm:ofi
    62 IC:export I_MPI_OFI_PROVIDER=psm2 
     62IC:export I_MPI_OFI_PROVIDER=psm2
    6363IC:export I_MPI_ADJUST_ALLTOALL=3
    6464IC:export I_MPI_HYDRA_BRANCH_COUNT=128
  • palm/trunk/SCRIPTS/.palm.config.atosb_debug

    r4439 r4480  
    2626%compiler_options    -fpe0 -check -check nooutput_conversion -check noarg_temp_created -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/intel.18/4.7.3/skl/include/ -I /sw/numerics/fftw3/impi/intel/3.3.8/skl/include/
    2727%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L /sw/numerics/fftw3/impi/intel/3.3.8/skl/lib -lfftw3
    28 %module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf-parallel/impi/intel fftw3/impi/intel
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel/18.0.6 impi/2018.5 netcdf-parallel/impi/intel fftw3/impi/intel
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
     
    3232
    3333# BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
    34 BD:#!/bin/bash 
     34BD:#!/bin/bash
    3535BD:#SBATCH --job-name={{job_id}}
    3636BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
    37 BD:#SBATCH --ntasks={{mpi_tasks}} 
     37BD:#SBATCH --ntasks={{mpi_tasks}}
    3838BD:#SBATCH --nodes={{nodes}}
    3939BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
     
    5454
    5555#----------------------------------------------------------------------------
    56 # INPUT-commands, executed before running PALM - lines must start with "IC:" 
     56# INPUT-commands, executed before running PALM - lines must start with "IC:"
    5757#----------------------------------------------------------------------------
    5858# my settings
     
    6060IC:export I_MPI_PMI_LIBRARY=libpmi.so
    6161IC:export I_MPI_FABRICS=shm:ofi
    62 IC:export I_MPI_OFI_PROVIDER=psm2 
     62IC:export I_MPI_OFI_PROVIDER=psm2
    6363IC:export I_MPI_ADJUST_ALLTOALL=3
    6464IC:export I_MPI_HYDRA_BRANCH_COUNT=128
  • palm/trunk/SCRIPTS/.palm.config.atosg

    r4410 r4480  
    2626%compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
    2727%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
    28 %module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_impi
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel/18.0.5 impi/2018.4 netcdf/4.6.3_intel.18_impi
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
  • palm/trunk/SCRIPTS/.palm.config.atosg_debug

    r4410 r4480  
    2626%compiler_options    -fpe0 -check -check nooutput_conversion -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
    2727%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
    28 %module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_impi
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel/18.0.5 impi/2018.4 netcdf/4.6.3_intel.18_impi
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
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