Changeset 4083 for palm/trunk/SCRIPTS

Timestamp:

Jul 10, 2019 3:27:28 PM (5 years ago)

Author:

gronemeier

Message:

bugfix: corrected module name in Atos configuration, updated debug configuration for Atos, removed accidentally inserted lines in install_rrtmg

Location:

palm/trunk/SCRIPTS

Files:

• .palm.config.atosg (modified) (5 diffs)
• .palm.config.atosg_debug (modified) (5 diffs)

palm/trunk/SCRIPTS/.palm.config.atosg

@@ -24 +24 @@
 %cpp_options         -cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__intel_compiler -D__fftw
 %make_options        -j 4
-%compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian   -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
+%compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
 %linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
-%module_commands     module use /sw/modules/HLRN; module load HLRNENV sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
+%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
 %execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
 %execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
@@ -32 +32 @@
 
 # BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
-BD:#!/bin/bash 
+BD:#!/bin/bash
 BD:#SBATCH --job-name={{job_id}}
 BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
-BD:#SBATCH --ntasks={{mpi_tasks}} 
+BD:#SBATCH --ntasks={{mpi_tasks}}
 BD:#SBATCH --nodes={{nodes}}
 BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
@@ -47 +47 @@
 BDT:#SBATCH --job-name=job_transfer
 BDT:#SBATCH --time=00:30:00
-BDT:#SBATCH --ntasks=1 
+BDT:#SBATCH --ntasks=1
 BDT:#SBATCH --nodes=1
 BDT:#SBATCH --ntasks-per-node=1
@@ -55 +55 @@
 
 #----------------------------------------------------------------------------
-# INPUT-commands, executed before running PALM - lines must start with "IC:" 
+# INPUT-commands, executed before running PALM - lines must start with "IC:"
 #----------------------------------------------------------------------------
 # my settings
@@ -61 +61 @@
 IC:export I_MPI_PMI_LIBRARY=libpmi.so
 IC:export I_MPI_FABRICS=shm:ofi
-IC:export I_MPI_OFI_PROVIDER=psm2 
+IC:export I_MPI_OFI_PROVIDER=psm2
 IC:module list
 

palm/trunk/SCRIPTS/.palm.config.atosg_debug

@@ -24 +24 @@
 %cpp_options         -cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__intel_compiler -D__fftw
 %make_options        -j 4
-%compiler_options    -fpe0 -check -check nooutput_conversion -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian   -I /home/bekklaus/opt/NetCDF_parallel_intel18/include  -I /home/bekklaus/opt/fftw3_intel18/include
-%linker_options      -L/home/bekklaus/opt/NetCDF_parallel_intel18/lib -lnetcdff -Wl,-rpath=/home/bekklaus/opt/NetCDF_parallel_intel18/lib -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
-%module_commands     module load slurm intel/compiler/64/2018/18.0.3
+%compiler_options    -fpe0 -check -check nooutput_conversion -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
+%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
+%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
 %execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
 %execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
@@ -32 +32 @@
 
 # BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
-BD:#!/bin/bash 
+BD:#!/bin/bash
 BD:#SBATCH --job-name={{job_id}}
 BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
-BD:#SBATCH --ntasks={{mpi_tasks}} 
+BD:#SBATCH --ntasks={{mpi_tasks}}
 BD:#SBATCH --nodes={{nodes}}
 BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
@@ -47 +47 @@
 BDT:#SBATCH --job-name=job_transfer
 BDT:#SBATCH --time=00:30:00
-BDT:#SBATCH --ntasks=1 
+BDT:#SBATCH --ntasks=1
 BDT:#SBATCH --nodes=1
 BDT:#SBATCH --ntasks-per-node=1
@@ -55 +55 @@
 
 #----------------------------------------------------------------------------
-# INPUT-commands, executed before running PALM - lines must start with "IC:" 
+# INPUT-commands, executed before running PALM - lines must start with "IC:"
 #----------------------------------------------------------------------------
 # my settings
@@ -61 +61 @@
 IC:export I_MPI_PMI_LIBRARY=libpmi.so
 IC:export I_MPI_FABRICS=shm:ofi
-IC:export I_MPI_OFI_PROVIDER=psm2 
+IC:export I_MPI_OFI_PROVIDER=psm2
 IC:module list