Changeset 4083


Ignore:
Timestamp:
Jul 10, 2019 3:27:28 PM (22 months ago)
Author:
gronemeier
Message:

bugfix: corrected module name in Atos configuration, updated debug configuration for Atos, removed accidentally inserted lines in install_rrtmg

Location:
palm/trunk
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/LIB/rrtmg/install_rrtmg

    r3943 r4083  
    1 #!/bin/ksh 
     1#!/bin/ksh
    22
    33# install_rrtmg - install script for creating a RRTMG library
     
    2222# Current revisions:
    2323# ------------------
    24 # 
    25 # 
     24#
     25#
    2626# Former revisions:
    2727# -----------------
     
    3030# 1613 2015-07-08 14:53:29Z maronga
    3131# Bugfix: compilation of shared library fails due to misplaced rm command
    32 # 
     32#
    3333# 1585 2015-04-30 07:05:52Z maronga
    3434# Initial revision
    35 # 
     35#
    3636#--------------------------------------------------------------------------------#
    3737# install_rrtmg - install script for creating a RRTMG library
     
    5353#
    5454
    55 
    56 %cpp_options         -cpp -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__fftw -D__netcdf -D__netcdf4 -D__netcdf4_parallel
    57 %make_options        -j 4
    58 %compiler_options    -fpe0 -O3 -xHost -fp-model source -ftz -fno-alias -no-prec-div -no-prec-sqrt -ip -I /muksoft/packages/fftw/3.3.7/mvapich2-2.3rc1/gnu/include/ -I /muksoft/packages/netcdf4_hdf5parallel/4411c_443f/hdf5-1.10.0-patch1/mvapich2-2.3rc1/intel/2018.1.163/include/
    59 %linker_options      -parallel -fpe0 -O3 -xHost -fp-model source -ftz -fno-alias -no-prec-div -no-prec-sqrt -ip -L/muksoft/packages/fftw/3.3.7/mvapich2-2.3rc1/gnu/lib64/ -lfftw3 -L/muksoft/packages/netcdf4_hdf5parallel/4411c_443f/hdf5-1.10.0-patch1/mvapich2-2.3rc1/intel/2018.1.163/lib64/ -lnetcdf -lnetcdff
    60 
    61 
    6255 compiler_name="mpif90"
    6356 fopts="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -fpe0 -O3 -xHost -fp-model source -ftz -fno-alias -no-prec-div -no-prec-sqrt -ip -I /muksoft/packages/fftw/3.3.7/mvapich2-2.3rc1/gnu/include/ -I /muksoft/packages/netcdf4_hdf5parallel/4411c_443f/hdf5-1.10.0-patch1/mvapich2-2.3rc1/intel/2018.1.163/include/"
     
    7366   case  $option  in
    7467       (p)   install_path=$OPTARG;;
    75  
     68
    7669       (\?)  printf "\n  +++ unknown option $OPTARG \n"
    7770             printf "\n  --> type \"$0 ?\" for available options \n"
     
    199192 fi
    200193
    201  printf "\n      Libraries $prog are installed in \"$install_path\".\n\n" 
     194 printf "\n      Libraries $prog are installed in \"$install_path\".\n\n"
    202195 printf "\n\n  *** all actions complete."
    203  
  • palm/trunk/SCRIPTS/.palm.config.atosg

    r4068 r4083  
    2424%cpp_options         -cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__intel_compiler -D__fftw
    2525%make_options        -j 4
    26 %compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian   -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
     26%compiler_options    -fpe0 -O3 -fp-model source -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
    2727%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
    28 %module_commands     module use /sw/modules/HLRN; module load HLRNENV sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
     
    3232
    3333# BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
    34 BD:#!/bin/bash 
     34BD:#!/bin/bash
    3535BD:#SBATCH --job-name={{job_id}}
    3636BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
    37 BD:#SBATCH --ntasks={{mpi_tasks}} 
     37BD:#SBATCH --ntasks={{mpi_tasks}}
    3838BD:#SBATCH --nodes={{nodes}}
    3939BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
     
    4747BDT:#SBATCH --job-name=job_transfer
    4848BDT:#SBATCH --time=00:30:00
    49 BDT:#SBATCH --ntasks=1 
     49BDT:#SBATCH --ntasks=1
    5050BDT:#SBATCH --nodes=1
    5151BDT:#SBATCH --ntasks-per-node=1
     
    5555
    5656#----------------------------------------------------------------------------
    57 # INPUT-commands, executed before running PALM - lines must start with "IC:" 
     57# INPUT-commands, executed before running PALM - lines must start with "IC:"
    5858#----------------------------------------------------------------------------
    5959# my settings
     
    6161IC:export I_MPI_PMI_LIBRARY=libpmi.so
    6262IC:export I_MPI_FABRICS=shm:ofi
    63 IC:export I_MPI_OFI_PROVIDER=psm2 
     63IC:export I_MPI_OFI_PROVIDER=psm2
    6464IC:module list
    6565
  • palm/trunk/SCRIPTS/.palm.config.atosg_debug

    r3850 r4083  
    2424%cpp_options         -cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__intel_compiler -D__fftw
    2525%make_options        -j 4
    26 %compiler_options    -fpe0 -check -check nooutput_conversion -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian   -I /home/bekklaus/opt/NetCDF_parallel_intel18/include -I /home/bekklaus/opt/fftw3_intel18/include
    27 %linker_options      -L/home/bekklaus/opt/NetCDF_parallel_intel18/lib -lnetcdff -Wl,-rpath=/home/bekklaus/opt/NetCDF_parallel_intel18/lib -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
    28 %module_commands     module load slurm intel/compiler/64/2018/18.0.3
     26%compiler_options    -fpe0 -check -check nooutput_conversion -traceback -g -O0 -align all -ftz -xCORE-AVX512 -no-prec-div -no-prec-sqrt -ip -convert little_endian -I /sw/dataformats/netcdf/4.6.3/skl/intel.18_mpi/include -I /home/bekklaus/opt/fftw3_intel18/include
     27%linker_options      -Wl,-rpath=\\$LD_RUN_PATH \\`nf-config --flibs\\` -L/home/bekklaus/opt/fftw3_intel18/lib -lfftw3
     28%module_commands     module use /sw/modules/HLRN; module load HLRNenv sw.skl slurm intel impi netcdf/4.6.3_intel.18_mpi
    2929%execute_command     srun --propagate=STACK --kill-on-bad-exit -n {{mpi_tasks}} -N {{nodes}} --ntasks-per-node={{tasks_per_node}}  palm
    3030%execute_command_for_combine   srun --propagate=STACK -n 1 --ntasks-per-node=1  combine_plot_fields.x
     
    3232
    3333# BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
    34 BD:#!/bin/bash 
     34BD:#!/bin/bash
    3535BD:#SBATCH --job-name={{job_id}}
    3636BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
    37 BD:#SBATCH --ntasks={{mpi_tasks}} 
     37BD:#SBATCH --ntasks={{mpi_tasks}}
    3838BD:#SBATCH --nodes={{nodes}}
    3939BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
     
    4747BDT:#SBATCH --job-name=job_transfer
    4848BDT:#SBATCH --time=00:30:00
    49 BDT:#SBATCH --ntasks=1 
     49BDT:#SBATCH --ntasks=1
    5050BDT:#SBATCH --nodes=1
    5151BDT:#SBATCH --ntasks-per-node=1
     
    5555
    5656#----------------------------------------------------------------------------
    57 # INPUT-commands, executed before running PALM - lines must start with "IC:" 
     57# INPUT-commands, executed before running PALM - lines must start with "IC:"
    5858#----------------------------------------------------------------------------
    5959# my settings
     
    6161IC:export I_MPI_PMI_LIBRARY=libpmi.so
    6262IC:export I_MPI_FABRICS=shm:ofi
    63 IC:export I_MPI_OFI_PROVIDER=psm2 
     63IC:export I_MPI_OFI_PROVIDER=psm2
    6464IC:module list
    6565
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