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Changeset 1446 for palm


Ignore:
Timestamp:
Aug 7, 2014 10:08:56 AM (10 years ago)
Author:
maronga
Message:

removed blanks from <> strings in .mrun.config files / adapted hlrn_watchdog for HLRN-III

Location:
palm/trunk/SCRIPTS
Files:
17 edited

Legend:

Unmodified
Added
Removed

  • palm/trunk/SCRIPTS/.mrun.config.csc_sisu

    r1241 r1446  
    3131# appropriately, if you are using a different compiler / MPI-Version.
    3232#
    33 %tmp_user_catalog    /wrk/<replace by your sisu-username>               lccrayf parallel
    34 %tmp_data_catalog    /wrk/<replace by your sisu-username>/restart_data  lccrayf parallel
     33%tmp_user_catalog    /wrk/<replace_by_your_sisu-username>               lccrayf parallel
     34%tmp_data_catalog    /wrk/<replace_by_your_sisu-username>/restart_data  lccrayf parallel
    3535%compiler_name       crayftn                                            lccrayf parallel
    3636%compiler_name_ser   crayftn                                            lccrayf parallel
    … …  
    4141%fopts               -em:-s:real64:-O2                                  lccrayf parallel
    4242%lopts               -em:-s:real64:-O2                                  lccrayf parallel
    43 %remote_username     <replace by your sisu-username>                    lccrayf parallel
     43%remote_username     <replace_by_your_sisu-username>                    lccrayf parallel
    4444%memory              1500                                               lccrayf parallel
    4545%login_init_cmd      .:/opt/modules/default/init/ksh\;:.:/etc/bash.bashrc.local\;:module:list  lccrayf parallel

  • palm/trunk/SCRIPTS/.mrun.config.cuhk

    r1241 r1446  
    1818#
    1919# The next line is just an example. Add your own line below or replace this line.
    20 %host_identifier   <hostname>  lccuhk
     20%host_identifier   <replace_with_your_hostname>  lccuhk
    2121#
    2222#
    … …  
    4343#%hostfile          $base_directory/.hostfile                    lccuhk parallel
    4444# if you want to load modules on the remote host, use the following line
    45 #%modules           <replace by the modules to be loaded>        lccuhk parallel
     45#%modules           <replace_by_the_modules_to_be_loaded>        lccuhk parallel
    4646# if you want to perform initial commands on ssh connections, use the following line
    47 #%login_init_cmd    <replace by the inital commands>             lccuhk parallel
    48 #%login_init_cmd    <replace by the inital commands>             lccuhk parallel
     47#%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel
     48#%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel
    4949#
    5050#
    … …  
    6262#%hostfile          $base_directory/.hostfile                    lccuhk parallel trace
    6363# if you want to load modules on the remote host, use the following line
    64 #%modules           <replace by the modules to be loaded>        lccuhk parallel trace
     64#%modules           <replace_by_the_modules_to_be_loaded>        lccuhk parallel trace
    6565# if you want to perform initial commands on ssh connections, use the following line
    66 #%login_init_cmd    <replace by the inital commands>             lccuhk parallel trace
     66#%login_init_cmd    <replace_by_the_inital_commands>             lccuhk parallel trace
    6767#
    6868#

  • palm/trunk/SCRIPTS/.mrun.config.default

    r1441 r1446  
    1818#
    1919# The next line is just an example. Add your own line below or replace this line.
    20 %host_identifier   myhostname  lcmy
     20%host_identifier   <replace_by_your_hostname>  lcmy
    2121#
    2222#
    … …  
    3434%compiler_name_ser ifort                                         <hi> parallel
    3535%cpp_options       -cpp:-D__mpi2:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__intel_compiler   <hi> parallel
    36 %netcdf_inc        -I:<replace by netcdf include path>           <hi> parallel
    37 %netcdf_lib        -L<replace by netcdf library path>:-lnetcdf   <hi> parallel
     36%netcdf_inc        -I:<replace_by_netcdf_include_path>           <hi> parallel
     37%netcdf_lib        -L<replace_by_netcdf_library_path>:-lnetcdf   <hi> parallel
    3838%mopts             -j:4                                          <hi> parallel
    39 %fopts             -I:<replace by mpi include path>:-fpe0:-O3:-xHost:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291   <hi> parallel
    40 %lopts             -L:<replace by mpi library path>:-fpe0:-O3:-xHost:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291   <hi> parallel
     39%fopts             -I:<replace_by_mpi_include path>:-fpe0:-O3:-xHost:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291   <hi> parallel
     40%lopts             -L:<replace_by_mpi_library path>:-fpe0:-O3:-xHost:-fp-model:source:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291   <hi> parallel
    4141# if you want to use your own hostfile, uncomment next line
    4242#%hostfile          $base_directory/.hostfile                    <hi> parallel
    4343# if you want this host to be used as a remote host, uncomment next line
    44 #%remote_username   <replace by your username on this host>      <hi> parallel
     44#%remote_username   <replace_by_your_username_on_this_host>      <hi> parallel
    4545# if you want to load modules on the remote host, use the following line
    46 #%modules           <replace by the modules to be loaded>        <hi> parallel
     46#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel
    4747# if you want to perform initial commands on ssh connections, use the following line
    48 #%login_init_cmd    <replace by the inital commands>             <hi> parallel
     48#%login_init_cmd    <replace_by_the_inital_commands>             <hi> parallel
    4949#
    5050#
    … …  
    5353%compiler_name_ser ifort                                         <hi> parallel trace
    5454%cpp_options       -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__intel_compiler   <hi> parallel trace
    55 %netcdf_inc        -I:<replace by netcdf include path>           <hi> parallel trace
    56 %netcdf_lib        -L<replace by netcdf library path>:-lnetcdf   <hi> parallel trace
     55%netcdf_inc        -I:<replace_by_netcdf_include_path>           <hi> parallel trace
     56%netcdf_lib        -L<replace_by_netcdf_library_path>:-lnetcdf   <hi> parallel trace
    5757%mopts             -j:4                                          <hi> parallel trace
    5858%fopts             -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-O0:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs  <hi> parallel trace
    … …  
    6161#%hostfile          $base_directory/.hostfile                    <hi> parallel trace
    6262# if you want this host to be used as a remote host, uncomment next line
    63 #%remote_username   <replace by your username on this host>      <hi> parallel trace
     63#%remote_username   <replace_by_your_username_on_this_host>      <hi> parallel trace
    6464# if you want to load modules on the remote host, use the following line
    65 #%modules           <replace by the modules to be loaded>        <hi> parallel trace
     65#%modules           <replace_by_the_modules_to_be_loaded>        <hi> parallel trace
    6666# if you want to perform initial commands on ssh connections, use the following line
    67 #%login_init_cmd    <replace by the inital commands>             <hi> parallel trace
     67#%login_init_cmd    <replace_by_the_inital_commands>             <hi> parallel trace
    6868#
    6969#

  • palm/trunk/SCRIPTS/.mrun.config.forwind

    r1241 r1446  
    77%base_data         ~/palm/current_version/JOBS
    88################################################################################
    9 # Replace <<REPLACE BY YOUR USERNAME> by your username on FLOW. Replace "/fw/"
     9# Replace <replace_with_your_local_username> by your username on FLOW. Replace "/fw/"
    1010# by "/iwes/" if your user directory resides in /iwes/.
    1111################################################################################
    12 %output_data       /data/work/gpfs/fw/<REPLACE BY YOUR USERNAME>/palm/current_version/JOBS
     12%output_data       /data/work/gpfs/fw/<replace_with_your_local_username>/palm/current_version/JOBS
    1313%source_path       $base_directory/trunk/SOURCE
    1414%add_source_path   $base_directory/USER_CODE/$fname
    … …  
    2323
    2424################################################################################
    25 # Replace <YOUR_DESKTOP_HOSTNAME> by the hostname of your desktop
     25# Replace <eplace_with_your_local_hostname> by the hostname of your desktop
    2626# an uncomment following line to enable job submission from you local desktop
    2727################################################################################
    28 #%host_identifier       <YOUR_DESKTOP_HOSTNAME>           lcfor
     28#%host_identifier       <replace_with_your_local_hostname>           lcfor
    2929
    3030################################################################################
    … …  
    3333# The next block contains all informations for compiling the PALM code
    3434# and for generating and running the PALM executable using MPI on a Linux machine
    35 # with gcc and OpenMPI. Replace <LOCAL_USERNAME> with your username on your
     35# with gcc and OpenMPI. Replace <replace_with_your_local_username> with your
     36# username on your
    3637# local machine
    3738#
    … …  
    4445#
    4546################################################################################
    46 %remote_username   <LOCAL_USERNAME>                                          lcfor parallel
     47%remote_username   <replace_with_your_local_username>                        lcfor parallel
    4748%tmp_user_catalog  /tmp                                                      lcfor parallel
    4849%tmp_data_catalog  /tmp                                                      lcfor parallel
    … …  
    6566# on host flow. Please note that other hosts may require different settings.
    6667################################################################################
    67 %remote_username   <USERNAME_FLOW>                                                                                               lcflow parallel
     68%remote_username   <replace_with_your_FLOW_username>                                                                             lcflow parallel
    6869%tmp_user_catalog  /data/work/gpfs/fw/$remote_username/tmp                                                                       lcflow parallel
    6970%tmp_data_catalog  /data/work/gpfs/fw/$remote_username/palm_restart_data                                                         lcflow parallel

  • palm/trunk/SCRIPTS/.mrun.config.hayaka

    r1241 r1446  
    2525# required paths (given in <>) by the respective paths valid on your host.
    2626#
    27 %tmp_user_catalog  <replace by your preferred tmp directory>     lckyuh parallel
    28 %tmp_data_catalog  <replace by your preferred data directory>    lckyuh parallel
     27%tmp_user_catalog  <replace_by_your_preferred_tmp_directory>     lckyuh parallel
     28%tmp_data_catalog  <replace_by_your_preferred_data_directory>    lckyuh parallel
    2929%compiler_name     mpifrtpx                                      lckyuh parallel
    3030%compiler_name_ser frtpx                                         lckyuh parallel
    … …  
    3737%lopts             -Kfast:-Ad                                    lckyuh parallel
    3838%scp_port          22                                            lckyuh parallel
    39 %remote_username   <replace by your hayaka username>             lckyuh parallel
     39%remote_username   <replace_by_your_hayaka_username>             lckyuh parallel
    4040#             
    4141%write_binary        true                             restart

  • palm/trunk/SCRIPTS/.mrun.config.hlrnIII

    r1440 r1446  
    3333#
    3434# HLRN-III Hannover
    35 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
    36 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
     35%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel
     36%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel
    3737%compiler_name       ftn                                                lccrayh parallel
    3838%compiler_name_ser   ftn                                                lccrayh parallel
    … …  
    4141%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayh parallel
    4242%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayh parallel
    43 %remote_username     <replace by your HLRN-III username>                lccrayh parallel
     43%remote_username     <replace_by_your_HLRN-III_username>                lccrayh parallel
    4444%memory              2300                                               lccrayh parallel
    4545%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel
    4646#
    4747# HLRN-III Hannover debug/trace mode
    48 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
    49 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
     48%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel trace
     49%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel trace
    5050%compiler_name       ftn                                                lccrayh parallel trace
    5151%compiler_name_ser   ftn                                                lccrayh parallel trace
    … …  
    5454%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
    5555%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
    56 %remote_username     <replace by your HLRN-III username>                lccrayh parallel trace
     56%remote_username     <replace_by_your_HLRN-III_username>                lccrayh parallel trace
    5757%memory              2300                                               lccrayh parallel trace
    5858%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel trace
    5959#
    6060# HLRN-III Berlin
    61 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
    62 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
     61%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel
     62%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel
    6363%compiler_name       ftn                                                lccrayb parallel
    6464%compiler_name_ser   ftn                                                lccrayb parallel
    … …  
    6767%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayb parallel
    6868%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayb parallel
    69 %remote_username     <replace by your HLRN-III username>                lccrayb parallel
     69%remote_username     <replace_by_your_HLRN-III_username>                lccrayb parallel
    7070%memory              2300                                               lccrayb parallel
    7171%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel
    7272#
    7373# HLRN-III Berlin debug/trace mode
    74 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
    75 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
     74%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel trace
     75%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel trace
    7676%compiler_name       ftn                                                lccrayb parallel trace
    7777%compiler_name_ser   ftn                                                lccrayb parallel trace
    … …  
    8080%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
    8181%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
    82 %remote_username     <replace by your HLRN-III username>                lccrayb parallel trace
     82%remote_username     <replace_by_your_HLRN-III_username>                lccrayb parallel trace
    8383%memory              2300                                               lccrayb parallel trace
    8484%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel trace

  • palm/trunk/SCRIPTS/.mrun.config.ibmh

    r1346 r1446  
    2727%memory            1500                                       ibmh parallel
    2828%cpumax            1000                                       ibmh parallel
    29 %remote_username   <replace by username on ibmh>              ibmh parallel
    30 %tmp_data_catalog  /work/<replace by project>/$remote_username/palm_restart_data    ibmh parallel
    31 %tmp_user_catalog  /work/<replace by project>/$remote_username                      ibmh parallel
    32 %output_data       /work/<replace by project>/$remote_username/$fname/OUTPUT        ibmh parallel
     29%remote_username   <replace_by_username_on_ibmh>              ibmh parallel
     30%tmp_data_catalog  /work/<replace_by_project>/$remote_username/palm_restart_data    ibmh parallel
     31%tmp_user_catalog  /work/<replace_by_project>/$remote_username                      ibmh parallel
     32%output_data       /work/<replace_by_project>/$remote_username/$fname/OUTPUT        ibmh parallel
    3333#
    3434#
    … …  
    4646%cpumax            1000                                       ibmh parallel trace
    4747%remote_username   b380021                                    ibmh parallel trace
    48 %remote_username   <replace by username on ibmh>              ibmh parallel trace
    49 %tmp_data_catalog  /work/<replace by project>/$remote_username/palm_restart_data    ibmh parallel trace
    50 %tmp_user_catalog  /work/<replace by project>/$remote_username                      ibmh parallel trace
    51 %output_data       /work/<replace by project>/$remote_username/$fname/OUTPUT        ibmh parallel trace
     48%remote_username   <replace_by_username_on_ibmh>              ibmh parallel trace
     49%tmp_data_catalog  /work/<replace_by_project>/$remote_username/palm_restart_data    ibmh parallel trace
     50%tmp_user_catalog  /work/<replace_by_project>/$remote_username                      ibmh parallel trace
     51%output_data       /work/<replace_by_project>/$remote_username/$fname/OUTPUT        ibmh parallel trace
    5252#
    5353#

  • palm/trunk/SCRIPTS/.mrun.config.imuk

    r1440 r1446  
    1818#
    1919# The next line is just an example. Add your own line below or replace this line.
    20 %host_identifier   bora     lcmuk
     20%host_identifier   <replace_by_your_IMUK_hostname>     lcmuk
    2121#
    2222# IMUK
    23 %remote_username   <replace by your IMUK username>                             lcmuk parallel
     23%remote_username   <replace_by_your_IMUK_username>                             lcmuk parallel
    2424%tmp_user_catalog  /localdata                                                  lcmuk parallel
    2525%compiler_name     mpif90                                                      lcmuk parallel
    … …  
    3535#
    3636# IMUK debug/trace mode
    37 %remote_username   <replace by your IMUK username>                             lcmuk parallel trace
     37%remote_username   <replace_by_your_IMUK_username>                             lcmuk parallel trace
    3838%tmp_user_catalog  /localdata                                                  lcmuk parallel trace
    3939%compiler_name     mpif90                                                      lcmuk parallel trace

  • palm/trunk/SCRIPTS/.mrun.config.imuk_gpu

    r1241 r1446  
    1313#
    1414# pure MPI version
    15 %remote_username   <replace by your IMUK username>               lcmuk parallel pgi
     15%remote_username   <replace_by_your_IMUK_username>               lcmuk parallel pgi
    1616%tmp_user_catalog  /localdata                                    lcmuk parallel pgi
    1717%compiler_name     mpif90                                        lcmuk parallel pgi
    … …  
    2323#
    2424# pure MPI version with debug options
    25 %remote_username   <replace by your IMUK username>               lcmuk parallel pgidbg
     25%remote_username   <replace_by_your_IMUK_username>               lcmuk parallel pgidbg
    2626%tmp_user_catalog  /localdata                                    lcmuk parallel pgidbg
    2727%compiler_name     mpif90                                        lcmuk parallel pgidbg
    … …  
    3333#
    3434# pure GPU version
    35 %remote_username   <replace by your IMUK username>                       lcmuk pgigpu
     35%remote_username   <replace_by_your_IMUK_username>                       lcmuk pgigpu
    3636%tmp_user_catalog  /localdata                                            lcmuk pgigpu
    3737%compiler_name     pgf90                                                 lcmuk pgigpu
    … …  
    4444#
    4545# MPI+GPU
    46 %remote_username   <replace by your IMUK username>               lcmuk parallel pgigpu
     46%remote_username   <replace_by_your_IMUK_username>               lcmuk parallel pgigpu
    4747%tmp_user_catalog  /localdata                                    lcmuk parallel pgigpu
    4848%compiler_name     mpif90                                        lcmuk parallel pgigpu

  • palm/trunk/SCRIPTS/.mrun.config.imuk_hlrnIII

    r1440 r1446  
    1919#
    2020# The next line is just an example. Add your own line below or replace this line.
    21 %host_identifier   bora         lcmuk
     21%host_identifier   <replace_by_your_IMUK_hostname>         lcmuk
    2222%host_identifier   hlogin*      lccrayh
    2323%host_identifier   hxc*         lccrayh
    … …  
    2626#
    2727# IMUK
    28 %remote_username   <replace by your IMUK username>                             lcmuk parallel
     28%remote_username   <replace_by_your_IMUK_username>                             lcmuk parallel
    2929%tmp_user_catalog  /localdata                                                  lcmuk parallel
    3030%compiler_name     mpif90                                                      lcmuk parallel
    … …  
    4040#
    4141# IMUK debug/trace mode
    42 %remote_username   <replace by your IMUK username>                             lcmuk parallel trace
     42%remote_username   <replace_by_your_IMUK_username>                             lcmuk parallel trace
    4343%tmp_user_catalog  /localdata                                                  lcmuk parallel trace
    4444%compiler_name     mpif90                                                      lcmuk parallel trace
    … …  
    5353#
    5454# HLRN-III Hannover
    55 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
    56 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel
     55%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel
     56%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel
    5757%compiler_name       ftn                                                lccrayh parallel
    5858%compiler_name_ser   ftn                                                lccrayh parallel
    … …  
    6161%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayh parallel
    6262%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayh parallel
    63 %remote_username     <replace by your HLRN-III username>                lccrayh parallel
     63%remote_username     <replace_by_your_HLRN-III_username>                lccrayh parallel
    6464%memory              2300                                               lccrayh parallel
    6565%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel
    6666#
    6767# HLRN-III Hannover debug/trace mode
    68 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
    69 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayh parallel trace
     68%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel trace
     69%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayh parallel trace
    7070%compiler_name       ftn                                                lccrayh parallel trace
    7171%compiler_name_ser   ftn                                                lccrayh parallel trace
    … …  
    7474%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
    7575%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayh parallel trace
    76 %remote_username     <replace by your HLRN-III username>                lccrayh parallel trace
     76%remote_username     <replace_by_your_HLRN-III_username>                lccrayh parallel trace
    7777%memory              2300                                               lccrayh parallel trace
    7878%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayh parallel trace
    7979#
    8080# HLRN-III Berlin
    81 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
    82 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel
     81%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel
     82%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel
    8383%compiler_name       ftn                                                lccrayb parallel
    8484%compiler_name_ser   ftn                                                lccrayb parallel
    … …  
    8787%fopts               -em:-O3:-hnoomp:-hfp3:-hdynamic                    lccrayb parallel
    8888%lopts               -em:-O3:-hnoomp:-hfp3:-hdynamic:-dynamic           lccrayb parallel
    89 %remote_username     <replace by your HLRN-III username>                lccrayb parallel
     89%remote_username     <replace_by_your_HLRN-III_username>                lccrayb parallel
    9090%memory              2300                                               lccrayb parallel
    9191%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel
    9292#
    9393# HLRN-III Berlin debug/trace mode
    94 %tmp_user_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
    95 %tmp_data_catalog    /gfs1/work/<replace by your HLRN-III username>     lccrayb parallel trace
     94%tmp_user_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel trace
     95%tmp_data_catalog    /gfs1/work/<replace_by_your_HLRN-III_username>     lccrayb parallel trace
    9696%compiler_name       ftn                                                lccrayb parallel trace
    9797%compiler_name_ser   ftn                                                lccrayb parallel trace
    … …  
    100100%fopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
    101101%lopts               -eD:-em:-g:-R:b:-K:trap=fp:-O0:-hnoomp             lccrayb parallel trace
    102 %remote_username     <replace by your HLRN-III username>                lccrayb parallel trace
     102%remote_username     <replace_by_your_HLRN-III_username>                lccrayb parallel trace
    103103%memory              2300                                               lccrayb parallel trace
    104104%modules             fftw:cray-hdf5-parallel:cray-netcdf-hdf5parallel   lccrayb parallel trace

  • palm/trunk/SCRIPTS/.mrun.config.imuknb

    r1440 r1446  
    1818#
    1919# The next line is just an example. Add your own line below or replace this line.
    20 %host_identifier   myhostname  lcmuknb
     20%host_identifier   <replace_with_your_hostname>  lcmuknb
    2121#
    2222#

  • palm/trunk/SCRIPTS/.mrun.config.kiaps

    r1402 r1446  
    2727%login_init_cmd      .:/cm/local/apps/environment-modules/3.2.6/init/ksh  lckiaps parallel
    2828%modules             pgi/11.10:PrgEnv-pgi/1.1:mpich2/1.4.1p1:netcdf       lckiaps parallel
    29 %tmp_user_catalog    /home/data/<replace by your kiaps username>          lckiaps parallel
    30 %tmp_data_catalog    /home/data/<replace by your kiaps username>          lckiaps parallel
     29%tmp_user_catalog    /home/data/<replace_by_your_kiaps_username>          lckiaps parallel
     30%tmp_data_catalog    /home/data/<replace_by_your_kiaps_username>          lckiaps parallel
    3131%compiler_name       mpif90                            lckiaps parallel
    3232%compiler_name_ser   pgf90                             lckiaps parallel
    … …  
    3737%fopts               -fastsse                          lckiaps parallel
    3838%lopts               -fastsse                          lckiaps parallel
    39 %remote_username     <replace by your kiaps username>  lckiaps parallel
     39%remote_username     <replace_by_your_kiaps_username>  lckiaps parallel
    4040%memory              1500                              lckiaps parallel
    4141#             

  • palm/trunk/SCRIPTS/.mrun.config.lcxe6

    r1388 r1446  
    3333# know your project account, check the output of the "cost" command on hexagon
    3434#
    35 %tmp_user_catalog    /work/<replace by your CrayXE6 username>                                                         lcxe6 parallel
    36 %tmp_data_catalog    /work/<replace by your CrayXE6 username>/tmp/                                                    lcxe6 parallel
     35%tmp_user_catalog    /work/<replace_by_your_CrayXE6_username>                                                         lcxe6 parallel
     36%tmp_data_catalog    /work/<replace_by_your_CrayXE6_username>/tmp/                                                    lcxe6 parallel
    3737%compiler_name       ftn                                                                                              lcxe6 parallel
    3838%compiler_name_ser   ftn                                                                                              lcxe6 parallel
    … …  
    4141%fopts               -O3:-r8:-fp-model:source:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcxe6 parallel
    4242%lopts               -O3:-r8:-fp-model:source:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib lcxe6 parallel
    43 %remote_username      <replace by your CrayXE6 username>                                                              lcxe6 parallel
     43%remote_username      <replace_by_your_CrayXE6_username>                                                              lcxe6 parallel
    4444%memory              1000                                                                                             lcxe6 parallel
    45 %project_account     <replace by your project account>                                                                lcxe6 parallel
     45%project_account     <replace_by_your_project_account>                                                                lcxe6 parallel
    4646%modules             modules:Base-opts:pmi:cray-mpich:netcdf-hdf5parallel:xtpe-network-gemini:gni-headers:fftw           lcxe6 parallel
    4747%login_init_cmd      .:/opt/modules/default/init/ksh\;:.:/etc/bash.bashrc.local\;:module:swap:PrgEnv-cray:PrgEnv-intel\;:module:unload:xtpe-interlagos     lcxe6 parallel
    48 %email_notification  <replace by your email address>                                                                  lcxe6 parallel
     48%email_notification  <replace_by_your_email_address>                                                                  lcxe6 parallel
    4949#
    50  %tmp_user_catalog    /work/<replace by your CrayXE6 username>                                                         lcxe6 parallel trace
    51 %tmp_data_catalog    /work/<replace by your CrayXE6 username>/tmp/                                                    lcxe6 parallel trace
     50 %tmp_user_catalog    /work/<replace_by_your_CrayXE6_username>                                                         lcxe6 parallel trace
     51%tmp_data_catalog    /work/<replace_by_your_CrayXE6_username>/tmp/                                                    lcxe6 parallel trace
    5252%compiler_name       ftn                                                                                              lcxe6 parallel trace
    5353%compiler_name_ser   ftn                                                                                              lcxe6 parallel trace
    … …  
    5656%fopts               -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-O0:-r8:-fp-model:source:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcxe6 parallel trace
    5757%lopts               -C:-check:nooutput_conversion:-fpe0:-debug:-traceback:-g:-w:-O0:-r8:-fp-model:source:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib                       lcxe6 parallel trace
    58 %remote_username      <replace by your CrayXE6 username>                                                              lcxe6 parallel trace
     58%remote_username      <replace_by_your_CrayXE6_username>                                                              lcxe6 parallel trace
    5959%memory              1000                                                                                             lcxe6 parallel trace
    60 %project_account     <replace by your project account>                                                                lcxe6 parallel trace
     60%project_account     <replace_by_your_project_account>                                                                lcxe6 parallel trace
    6161%modules             modules:Base-opts:pmi:cray-mpich:netcdf-hdf5parallel:xtpe-network-gemini:gni-headers:fftw           lcxe6 parallel trace
    6262%login_init_cmd      .:/opt/modules/default/init/ksh\;:.:/etc/bash.bashrc.local\;:module:swap:PrgEnv-cray:PrgEnv-intel\;:module:unload:xtpe-interlagos     lcxe6 parallel trace
    63 %email_notification  <replace by your email address>                                                                  lcxe6 parallel trace
     63%email_notification  <replace_by_your_emai_address>                                                                  lcxe6 parallel trace
    6464#           
    6565%write_binary        true                             restart

  • palm/trunk/SCRIPTS/.mrun.config.riam

    r1241 r1446  
    4242%cpumax            1000                                       necriam parallel
    4343%numprocs          4                                          necriam parallel
    44 %tmp_data_catalog  /work/<replace by your username>/restart_data  necriam parallel
    45 %tmp_user_catalog  /work/<replace by your username>               necriam parallel
    46 %remote_username   <replace by your username>                     necriam parallel
     44%tmp_data_catalog  /work/<replace_by_your_username>/restart_data  necriam parallel
     45%tmp_user_catalog  /work/<replace_by_your_username>               necriam parallel
     46%remote_username   <replace_by_your_username>                     necriam parallel
    4747#
    4848%write_binary                true                             restart

  • palm/trunk/SCRIPTS/.mrun.config.tatara

    r1241 r1446  
    2525# required paths (given in <>) by the respective paths valid on your host.
    2626#
    27 %tmp_user_catalog  <replace by your preferred tmp directory>     lckyut parallel
     27%tmp_user_catalog  <replace_by_your_preferred_tmp_directory>     lckyut parallel
    2828%compiler_name     mpifrt                                        lckyut parallel
    2929%compiler_name_ser frt                                           lckyut parallel
    … …  
    3636%lopts             -Kfast:-Ad                                    lckyut parallel
    3737%scp_port          22                                            lckyut parallel
    38 %remote_username   <replace by your tatara username>             lckyut parallel
     38%remote_username   <replace_by_your_tatara_username>             lckyut parallel
    3939#             
    4040%write_binary        true                             restart

  • palm/trunk/SCRIPTS/.mrun.config.yonsei2011

    r1241 r1446  
    1717%host_identifier   gaia*       ibmkisti
    1818#
    19 %remote_username   <replace by username on climate0>             lcyon parallel
     19%remote_username   <replace_by_username_on_climate0>             lcyon parallel
    2020%tmp_user_catalog  $base_directory/work                          lcyon parallel
    2121%tmp_data_catalog  $base_directory/work                          lcyon parallel
    … …  
    4040%cpumax            1000                                       ibmkisti parallel
    4141%numprocs          4                                          ibmkisti parallel
    42 %remote_username   <replace by username on KISTI-IBM>         ibmkisti parallel
    43 %tmp_data_catalog  /gpfs1/<replace by username on KISTI-IBM>/palm_restart_data    ibmkisti parallel
    44 %tmp_user_catalog  /gpfs1/<replace by username on KISTI-IBM>                      ibmkisti parallel
     42%remote_username   <replace_by_username_on_KISTI-IBM>         ibmkisti parallel
     43%tmp_data_catalog  /gpfs1/<replace_by_username_on_KISTI-IBM>/palm_restart_data    ibmkisti parallel
     44%tmp_user_catalog  /gpfs1/<replace_by_username_on_KISTI-IBM>                      ibmkisti parallel
    4545#
    4646%write_binary                true                             restart

  • palm/trunk/SCRIPTS/hlrn_watchdog

    r1310 r1446  
    11#!/bin/ksh
    2 
    32#--------------------------------------------------------------------------------#
    43# This file is part of PALM.
    … …  
    2019# Current revisions:
    2120# -----------------
    22 #
     21# Adapted for HLRN III. Added windows if no runs are queued.
     22#
    2323# Former revisions:
    2424# -----------------
    … …  
    4141#------------------------------------------------------------------------------!
    4242
     43    check_hannover=false
     44    check_berlin=true
     45    debug=true
     46    PALM_BIN="/home/maronga/palm/tmp_version/trunk/SCRIPTS"
     47
    4348    cd $PALM_BIN
    4449
    45     gate_h="hicegate.hlrn.de"
    46     gate_b="bicegate.hlrn.de"
     50    gate_h="hlogin.hlrn.de"
     51    gate_b="blogin.hlrn.de"
    4752    update_frequency=600
    4853
    4954#   trap strg+c
    50     trap 'killall kdialog; exit' 2
     55    trap 'kill -9 $infoPID > /dev/null; kill -9 $dialogPID > /dev/null; exit' 2
    5156
    5257
    … …  
    6166          kill -9 $killid > /dev/null
    6267          killall kdialog
     68
     69          if [[ -f .watchdog_report.x ]] then
     70             rm .watchdog_report.x
     71          fi
     72          if [[ -f .watchdog_status.x ]] then
     73             rm .watchdog_status.x
     74          fi
    6375          echo "*** hlrn_watchdog stopped."
    6476       else
    … …  
    7385           echo "+++ hlrn_watchdog is already running."
    7486        else
    75            nohup ./hlrn_watchdog $2 1> /dev/null 2> /dev/null &
     87           if [[ $debug = true ]] then
     88              ./hlrn_watchdog $2 &
     89           else
     90              nohup ./hlrn_watchdog $2 1> /dev/null 2> /dev/null &
     91           fi
    7692           echo "\n*** hlrn_watchdog starting..."
    7793        fi
    7894        exit
    7995    else
    80 
    8196#      login via ssh and collect information in .watchdog_report.x
    8297       while true
    8398       do
    84           ssh  $gate_h -l $1 "showq | egrep \"($1)\"" > .watchdog_report.x
     99          touch .watchdog_report.x
     100          if [[ $check_hannover == true ]] then
     101             ssh  $gate_h -l $1 "showq | egrep \"($1)\"" > .watchdog_report.x
     102          fi
     103          if [[ $check_berlin == true ]] then
    85104          ssh  $gate_b -l $1 "showq | egrep \"($1)\"" >> .watchdog_report.x
     105          fi
    86106
    87107          i=0
    … …  
    104124          done
    105125          rm .watchdog_report.x
     126          touch .watchdog_status.x
    106127
    107128#         check for terminated jobs and status changes
    … …  
    138159          done
    139160
     161#         check whether any jobs are queued
     162          touch .watchdog_report.x
     163          file_size=`ls -l .watchdog_report.x | tr -s " " | cut -d " " -f 5`
     164          if [[ $file_size == 0 ]] then
     165            printf "No jobs queued.\n" >> .watchdog_report.x
     166          fi
     167
    140168#         get estimated starting time for all idle jobs and write watchdog output in .watchdog_report.x
    141169          while (( $j < $i ))
    … …  
    162190
    163191#         kill all windows
    164           killall kdialog
     192          if  [[ "$infoPID" -ne "" ]] then
     193             kill -9 $infoPID > /dev/null
     194             unset $infoPID
     195          fi
     196          if  [[ "$dialogPID" -ne "" ]] then
     197             kill -9 $dialogPID > /dev/null
     198             unset $dialogPID
     199          fi
    165200
    166201          timestamp=`date`
    167202
    168203#         create window and show information
    169           kdialog --textbox .watchdog_report.x 550 150 --title "HLRN watchdog  (last update: $timestamp)" &
     204          kdialog --textbox .watchdog_report.x 550 150 --title "HLRN watchdog  (last update: $timestamp)" & dialogPID=$!
    170205
    171206#         in case of status changes and terminated jobs, inform the user
    172207          if [[ $info != "" ]]
    173208          then
    174              kdialog --msgbox "$info" --title "HLRN Job Information" &
     209             kdialog --msgbox "$info" --title "HLRN Job Information" & infoPID=$!
    175210          fi
    176211
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