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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 4512

Last change on this file since 4512 was 4481, checked in by maronga, 5 years ago
Bugfix for copyright updates in document_changes; copyright update applied to all files
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1	PROGRAM combine_plot_fields
2
3	!------------------------------------------------------------------------------!
4	! This file is part of the PALM model system.
5	!
6	! PALM is free software: you can redistribute it and/or modify it under the
7	! terms of the GNU General Public License as published by the Free Software
8	! Foundation, either version 3 of the License, or (at your option) any later
9	! version.
10	!
11	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
12	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
13	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
14	!
15	! You should have received a copy of the GNU General Public License along with
16	! PALM. If not, see <http://www.gnu.org/licenses/>.
17	!
18	! Copyright 1997-2020 Leibniz Universitaet Hannover
19	!------------------------------------------------------------------------------!
20	!
21	! Current revisions:
22	! -----------------
23	!
24	!
25	! Former revisions:
26	! -----------------
27	! $Id: combine_plot_fields.f90 4481 2020-03-31 18:55:54Z monakurppa $
28	! bugfix for processing data from atmosphere-ocean coupled runs (only atmosphere data were
29	! processed, but twice)
30	!
31	! 3241 2018-09-12 15:02:00Z raasch
32	! unused variables removed
33	!
34	! 2718 2018-01-02 08:49:38Z maronga
35	! Corrected "Former revisions" section
36	!
37	! 2696 2017-12-14 17:12:51Z kanani
38	! Change in file header (GPL part)
39	!
40	! 2669 2017-12-06 16:03:27Z raasch
41	! data of 3d-nest runs are completely processed now
42	!
43	! 2523 2017-10-05 14:42:47Z kanani
44	! Increased LEN for CHARACTER variable var_name, equal to the value in PALM
45	!
46	! 2512 2017-10-04 08:26:59Z raasch
47	! PALM output does not contain ghost layer data any more
48	! avs- and iso2d-related parts removed, handling of compressed data removed
49	!
50	! 2365 2017-08-21 14:59:59Z kanani
51	! Vertical grid nesting implemented (SadiqHuq)
52	!
53	! 1809 2016-04-05 20:13:28Z raasch
54	!
55	! 1808 2016-04-05 19:44:00Z raasch
56	! cpu measurements are done with standard FORTRAN routine on every machine
57	!
58	! 1551 2015-03-03 14:18:16Z maronga
59	! Adjustments for data output of soil model quantities
60	!
61	! 1468 2014-09-24 14:06:57Z maronga
62	! Adapted for use on up to 6-digit processor cores (not tested)
63	!
64	! 1394 2014-05-06 10:17:31Z keck
65	! KIND-attribute added to all INTEGER and REAL declaration statements
66	!
67	! 1046 2012-11-09 14:38:45Z maronga
68	! code put under GPL (PALM 3.9)
69	!
70	! 691 2011-03-04 08:45:30Z maronga
71	! Bugfix: check for precursor ocean runs, removed typo
72	!
73	! 493 2010-03-01 08:30:24Z raasch
74	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
75	! cpu measurements included
76	!
77	! 210 2008-11-06 08:54:02Z raasch
78	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
79	! all three dimensions), because output of a subset of the data
80	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
81	! with the INTEL compiler.
82	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
83	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
84	! Bugfix: three misplaced #endif directives
85	!
86	! 114 2007-10-10 00:03:15Z raasch
87	! Bugfix: model_string needed a default value
88	!
89	! Aug 07 Loop for processing of output by coupled runs, id_string does not
90	! contain modus any longer
91	!
92	! 18/01/06 Output of time-averaged data
93	!
94	! 25/05/05 Errors removed
95	!
96	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
97	! file exists
98	!
99	! 31/10/01 All comments and messages translated into English
100	!
101	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
102	! Ursprungsversion vom 28/07/97
103	!
104	!
105	! Description:
106	! ------------
107	! This routine combines data of the PALM-subdomains into one file. In PALM
108	! every processor element opens its own file and writes 2D- or 3D-binary-data
109	! into it (different files are opened for xy-, xz-, yz-cross-sections and
110	! 3D-data). For plotting or analyzing these PE-data have to be collected and
111	! to be put into single files, which is done by this routine.
112	! Output format is NetCDF. Additionally, a data are output in a binary format
113	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
114	!------------------------------------------------------------------------------!
115
116	#if defined( __netcdf )
117	USE netcdf
118	#endif
119
120	IMPLICIT NONE
121
122	!
123	!-- Local variables
124	CHARACTER (LEN=2) :: modus
125	CHARACTER (LEN=4) :: model_string
126	CHARACTER (LEN=6) :: id_string
127	CHARACTER (LEN=30) :: dimname, var_name
128	CHARACTER (LEN=40) :: filename
129
130	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
131
132	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
133
134	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
135	nxa, nxe, nya, nye, &
136	nza, nze, pos, time_step, xa, xe, xxa, xxe, ya, ya_do, &
137	ya_tot, ye, ye_do, ye_tot, yya, yye, za, ze
138
139	INTEGER(8) :: count, count_rate
140
141	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
142	fanz, id_set, id_var_time, num_var
143	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
144	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
145	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
146
147	LOGICAL :: found, found_ao, nest3d, netcdf_output, netcdf_parallel, netcdf_0, &
148	netcdf_1, vnest
149
150	REAL(wp) :: cpu_start_time, cpu_end_time, simulated_time
151	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
152	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
153
154
155
156	PRINT*, ''
157	PRINT*, ''
158	PRINT, ' combine_plot_fields *'
159
160	!
161	!-- Find out if a coupled or nested run has been carried out
162	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found_ao )
163	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
164	INQUIRE( FILE='3DNESTING', EXIST=nest3d )
165	IF ( found_ao ) THEN
166	models = 2
167	PRINT*, ' coupled run'
168	ELSEIF ( vnest ) THEN
169	models = 2
170	PRINT*, ' Vertically nested grid coupling'
171	ELSEIF ( nest3d ) THEN
172	OPEN( 90, FILE='3DNESTING', FORM='FORMATTED' )
173	READ ( 90, '(I2)' ) models
174	CLOSE ( 90 )
175	PRINT*, ' 3d-nest run'
176	PRINT*, ' number of nest domains = ', models
177	ELSE
178	models = 1
179	PRINT*, ' uncoupled run'
180	ENDIF
181
182	!
183	!-- Find out if a precursor ocean run has been carried out
184	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
185	IF ( found ) THEN
186	model_string = '_O'
187	PRINT*, ' precursor ocean run'
188	ELSE
189	model_string = ''
190	ENDIF
191
192	!
193	!-- Do everything for each model
194	DO model = 1, models
195	!
196	!-- Set the model string used to identify the filenames
197	IF ( found_ao .OR. vnest ) THEN
198	PRINT*, ''
199	IF ( model == 2 ) THEN
200	IF ( vnest ) THEN
201	model_string = '_N'
202	PRINT*, ' now combining FINE data'
203	PRINT*, ' ========================'
204	ELSE
205	model_string = '_O'
206	PRINT*, ' now combining ocean data'
207	PRINT*, ' ========================'
208	ENDIF
209	ELSE
210	IF ( vnest ) THEN
211	PRINT*, ' now combining COARSE data'
212	PRINT*, ' ============================='
213	ELSE
214	PRINT*, ' now combining atmosphere data'
215	PRINT*, ' ============================='
216	ENDIF
217	ENDIF
218	ELSEIF ( nest3d ) THEN
219	PRINT*, ''
220	PRINT*, '--> processing nest id = ', model
221	IF ( model == 1 ) THEN
222	model_string = ''
223	ELSE
224	WRITE( model_string, '(A2,I2.2)' ) '_N', model
225	ENDIF
226	ENDIF
227	!
228	!-- 2D-arrays for ISO2D
229	!-- Main loop for the three different cross-sections, starting with
230	!-- xy-section
231	modus = 'XY'
232	PRINT*, ''
233	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
234	!
235	!-- Take current time
236	CALL SYSTEM_CLOCK( count, count_rate )
237	cpu_start_time = REAL( count ) / REAL( count_rate )
238
239	netcdf_parallel = .FALSE.
240	!
241	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
242	!-- create any output for this cross-section.
243	danz = 0
244	WRITE (id_string,'(I6.6)') danz
245	INQUIRE ( &
246	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
247	EXIST=found )
248	!
249	!-- Find out the number of files (equal to the number of PEs which
250	!-- have been used in PALM) and open them
251	DO WHILE ( found )
252
253	OPEN ( danz+110, &
254	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
255	FORM='UNFORMATTED' )
256	danz = danz + 1
257	WRITE (id_string,'(I6.6)') danz
258	INQUIRE ( &
259	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
260	EXIST=found )
261
262	ENDDO
263
264	!
265	!-- Inquire whether a NetCDF file exists
266	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
267	EXIST=netcdf_0 )
268
269	!
270	!-- Inquire whether a NetCDF file for time-averaged data exists
271	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
272	EXIST=netcdf_1 )
273
274	IF ( netcdf_0 .OR. netcdf_1 ) THEN
275	netcdf_output = .TRUE.
276	!
277	!-- Inquire whether the NetCDF file is already complete (parallel
278	!-- output)
279	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
280	EXIST=netcdf_parallel )
281	IF ( netcdf_parallel ) THEN
282	netcdf_parallel = .TRUE.
283	ELSE
284	netcdf_parallel = .FALSE.
285	ENDIF
286	ELSE
287	netcdf_output = .FALSE.
288	ENDIF
289
290	!
291	!-- Info-output
292	PRINT*, ''
293	#if defined( __netcdf )
294	IF ( netcdf_output ) THEN
295	IF ( netcdf_parallel ) THEN
296	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
297	'(NetCDF4-format) - merging not neccessary'
298	ELSE
299	PRINT*, ' NetCDF output enabled'
300	ENDIF
301	ENDIF
302	#else
303	IF ( netcdf_output ) THEN
304	PRINT*, '--- Sorry, no NetCDF support on this host'
305	netcdf_output = .FALSE.
306	ENDIF
307	#endif
308	IF ( .NOT. netcdf_parallel ) THEN
309	IF ( danz /= 0 ) THEN
310	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
311	ELSE
312	PRINT*, ' no ', modus, '-section data available'
313	ENDIF
314	ENDIF
315
316	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
317	THEN
318	#if defined( __netcdf )
319	DO av = 0, 1
320
321	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
322	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
323
324	!
325	!-- Open NetCDF dataset
326	IF ( av == 0 ) THEN
327	filename = 'DATA_2D_'//modus//'_NETCDF' &
328	//TRIM( model_string )
329	ELSE
330	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
331	//TRIM( model_string )
332	ENDIF
333	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
334	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
335
336	!
337	!-- Get the list of variables (order of variables corresponds with
338	!-- the order of data on the binary file)
339	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
340	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
341	var_list(av) )
342	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
343
344	!
345	!-- Inquire id of the time coordinate variable
346	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
347	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
348
349	!
350	!-- Count number of variables; there is one more semicolon in the
351	!-- string than variable names
352	num_var(av) = -1
353	DO i = 1, LEN( var_list(av) )
354	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
355	ENDDO
356
357	!
358	!-- Extract the variable names from the list and inquire their
359	!-- NetCDF IDs
360	pos = INDEX( var_list(av), ';' )
361	!
362	!-- Loop over all variables
363	DO i = 1, num_var(av)
364
365	!
366	!-- Extract variable name from list
367	var_list(av) = var_list(av)(pos+1:)
368	pos = INDEX( var_list(av), ';' )
369	var_name = var_list(av)(1:pos-1)
370
371	!
372	!-- Get variable ID from name
373	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
374	id_var(av,i) )
375	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
376
377	!
378	!-- Get number of x/y/z levels for that variable
379	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
380	dimids = id_dims_loc )
381	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
382	id_dims(av,:) = id_dims_loc
383
384	!
385	!-- Inquire dimension ID
386	DO j = 1, 4
387	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
388	id_dims(av,j), dimname, levels(av,i) )
389	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
390
391	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
392	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
393	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
394	ENDDO
395
396	ENDDO
397
398	ENDDO ! av = 0, 1
399
400	#endif
401	ENDIF
402
403	!
404	!-- Read the arrays, as long as the end of the file is reached
405	IF ( .NOT. netcdf_parallel ) THEN
406
407	fanz = 0
408	current_level = 1
409	current_var = 999999999
410
411	DO WHILE ( danz /= 0 )
412
413	!
414	!-- Loop over all files (reading data of the subdomains)
415	DO id = 0, danz-1
416	!
417	!-- File from PE0 contains special information at the beginning,
418	!-- concerning the lower and upper indices of the total-domain
419	!-- used in PALM (nxa, nxe, nya, nye).
420	!-- Allocate necessary arrays, open the output file and write
421	!-- the coordinate informations needed by ISO2D.
422	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
423
424	READ ( id+110 ) nxa, nxe, nya, nye
425	ALLOCATE ( pf(nxa:nxe,nya:nye) )
426	!
427	!-- Set actual domain bounds to total domain
428	ya_do = nya
429	ye_do = nye
430
431	ENDIF
432	!
433	!-- Read output time
434	IF ( netcdf_output .AND. id == 0 ) THEN
435	READ ( id+110, END=998 ) simulated_time, time_step, av
436	ENDIF
437	!
438	!-- Read subdomain indices
439	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
440
441	!
442	!-- IF the PE made no output (in case that no part of the
443	!-- cross-section is situated on this PE), indices have the
444	!-- value -1
445	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
446	ya == -1 .AND. ye == -1 ) ) THEN
447
448
449	!
450	!-- Read the subdomain grid-point values
451	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
452	READ ( id+110 ) pf_tmp
453	!
454	!-- Calculate indices on atmospheric grid (e.g. for soil model
455	!-- quantities)
456	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
457	ye_do = ye - ya
458	ya_do = ya
459	pf(xa:xe,ya_do:ye_do) = pf_tmp
460	ELSE
461	ye_do = nye
462	ya_do = nya
463	pf(xa:xe,ya:ye) = pf_tmp
464	ENDIF
465
466	DEALLOCATE( pf_tmp )
467	ENDIF
468	IF ( id == 0 ) fanz(av) = fanz(av) + 1
469
470	ENDDO
471	!
472	!-- Write data in NetCDF format
473	IF ( netcdf_output ) THEN
474	#if defined( __netcdf )
475	!
476	!-- Check if a new time step has begun; if yes write data to
477	!-- time axis
478	IF ( current_var(av) > num_var(av) ) THEN
479	current_var(av) = 1
480	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
481	(/ simulated_time /), &
482	start = (/ time_step /), &
483	count = (/ 1 /) )
484	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
485	ENDIF
486
487	!
488	!-- Now write the data; this is mode dependent
489	SELECT CASE ( modus )
490
491	CASE ( 'XY' )
492	nc_stat = NF90_PUT_VAR( id_set(av), &
493	id_var(av,current_var(av)), &
494	pf(nxa:nxe,nya:nye), &
495	start = (/ 1, 1, current_level(av), time_step /), &
496	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
497	IF ( nc_stat /= NF90_NOERR ) THEN
498	CALL handle_netcdf_error( 8 )
499	ENDIF
500
501	CASE ( 'XZ' )
502	nc_stat = NF90_PUT_VAR( id_set(av), &
503	id_var(av,current_var(av)), &
504	pf(nxa:nxe,ya_do:ye_do), &
505	start = (/ 1, current_level(av), 1, time_step /), &
506	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
507	IF ( nc_stat /= NF90_NOERR ) THEN
508	CALL handle_netcdf_error( 9 )
509	ENDIF
510
511	CASE ( 'YZ' )
512	nc_stat = NF90_PUT_VAR( id_set(av), &
513	id_var(av,current_var(av)), &
514	pf(nxa:nxe,ya_do:ye_do), &
515	start = (/ current_level(av), 1, 1, time_step /), &
516	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
517	IF ( nc_stat /= NF90_NOERR ) THEN
518	CALL handle_netcdf_error( 10 )
519	ENDIF
520
521	END SELECT
522
523	!
524	!-- Data is written, check if max level is reached
525	current_level(av) = current_level(av) + 1
526	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
527	current_level(av) = 1
528	current_var(av) = current_var(av) + 1
529	ENDIF
530
531	#endif
532	ENDIF
533
534	ENDDO
535
536	ENDIF
537
538	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
539	!
540	!-- Print the number of the arrays processed
541	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
542	IF ( fanz(1) /= 0 ) THEN
543	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
544	ENDIF
545
546	!
547	!-- Close all files and deallocate arrays
548	DO id = 0, danz-1
549	CLOSE ( id+110 )
550	ENDDO
551	CLOSE ( 2 )
552	DEALLOCATE ( pf )
553
554	!
555	!-- Close the NetCDF file
556	IF ( netcdf_output ) THEN
557	#if defined( __netcdf )
558	IF ( netcdf_0 ) THEN
559	nc_stat = NF90_CLOSE( id_set(0) )
560	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
561	ENDIF
562	IF ( netcdf_1 ) THEN
563	nc_stat = NF90_CLOSE( id_set(1) )
564	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
565	ENDIF
566	#endif
567	ENDIF
568	ENDIF
569
570	!
571	!-- Output required cpu time
572	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
573	CALL SYSTEM_CLOCK( count, count_rate )
574	cpu_end_time = REAL( count ) / REAL( count_rate )
575	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
576	cpu_end_time-cpu_start_time, ' sec'
577	ENDIF
578
579	!
580	!-- Choose the next cross-section
581	SELECT CASE ( modus )
582	CASE ( 'XY' )
583	modus = 'XZ'
584	CASE ( 'XZ' )
585	modus = 'YZ'
586	CASE ( 'YZ' )
587	modus = 'no'
588	END SELECT
589
590	ENDDO
591
592
593	!
594	!-- Combine the 3D-arrays
595	netcdf_parallel = .FALSE.
596
597	!
598	!-- Info-output
599	PRINT*, ' '
600
601	!
602	!-- Take current time
603	CALL SYSTEM_CLOCK( count, count_rate )
604	cpu_start_time = REAL( count ) / REAL( count_rate )
605
606	!
607	!-- Inquire whether a NetCDF file exists
608	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
609
610	!
611	!-- Inquire whether a NetCDF file for time-averaged data exists
612	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
613
614	IF ( netcdf_0 .OR. netcdf_1 ) THEN
615	netcdf_output = .TRUE.
616	!
617	!-- Inquire whether the NetCDF file is already complete (parallel output)
618	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
619	IF ( netcdf_parallel ) THEN
620	netcdf_parallel = .TRUE.
621	ELSE
622	netcdf_parallel = .FALSE.
623	ENDIF
624	ELSE
625	netcdf_output = .FALSE.
626	ENDIF
627
628	!
629	!-- Check, if file from PE0 exists; not neccessary in case of parallel
630	!-- PALM output
631	IF ( .NOT. netcdf_parallel ) THEN
632	danz = 0
633	WRITE (id_string,'(I6.6)') danz
634	INQUIRE ( &
635	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
636	EXIST=found )
637	ELSE
638	found = .FALSE.
639	ENDIF
640
641	!
642	!-- Find out the number of files and open them
643	DO WHILE ( found )
644
645	OPEN ( danz+110, &
646	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
647	FORM='UNFORMATTED')
648	danz = danz + 1
649	WRITE (id_string,'(I6.6)') danz
650	INQUIRE ( &
651	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
652	EXIST=found )
653
654	ENDDO
655
656	#if defined( __netcdf )
657	IF ( netcdf_output ) THEN
658	IF ( netcdf_parallel ) THEN
659	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
660	' - merging not neccessary'
661	ELSE
662	PRINT*, ' NetCDF output enabled'
663	ENDIF
664	ENDIF
665	#else
666	IF ( netcdf_output ) THEN
667	PRINT*, '--- Sorry, no NetCDF support on this host'
668	netcdf_output = .FALSE.
669	ENDIF
670	#endif
671	IF ( .NOT. netcdf_parallel ) THEN
672	IF ( danz /= 0 ) THEN
673	PRINT*, ' 3D-data: ', danz, ' file(s) found'
674	ELSE
675	PRINT*, ' no 3D-data file available'
676	ENDIF
677	ENDIF
678
679	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
680	#if defined( __netcdf )
681	DO av = 0, 1
682
683	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
684	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
685
686	!
687	!-- Open NetCDF dataset
688	IF ( av == 0 ) THEN
689	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
690	ELSE
691	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
692	ENDIF
693	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
694	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
695
696
697	!
698	!-- Get the list of variables (order of variables corresponds with the
699	!-- order of data on the binary file)
700	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
701	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
702	var_list(av) )
703	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
704
705	!
706	!-- Inquire id of the time coordinate variable
707	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
708	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
709
710	!
711	!-- Count number of variables; there is one more semicolon in the
712	!-- string than variable names
713	num_var(av) = -1
714	DO i = 1, LEN( var_list(av) )
715	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
716	ENDDO
717
718	!
719	!-- Extract the variable names from the list and inquire their NetCDF
720	!-- IDs
721	pos = INDEX( var_list(av), ';' )
722	!
723	!-- Loop over all variables
724	DO i = 1, num_var(av)
725
726	!
727	!-- Extract variable name from list
728	var_list(av) = var_list(av)(pos+1:)
729	pos = INDEX( var_list(av), ';' )
730	var_name = var_list(av)(1:pos-1)
731
732	!
733	!-- Get variable ID from name
734	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
735	id_var(av,i) )
736	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
737
738	ENDDO
739
740	ENDDO ! av=0,1
741
742	#endif
743	ENDIF
744
745	!
746	!-- Read arrays, until the end of the file is reached
747	IF ( .NOT. netcdf_parallel ) THEN
748
749	current_var = 999999999
750	fanz = 0
751	DO WHILE ( danz /= 0 )
752
753	!
754	!-- Loop over all files
755	DO id = 0, danz-1
756	!
757	!-- File from PE0 contains at the beginning the index bounds
758	!-- of PALM's total domain.
759	!-- Allocate the array for storing the total domain data
760	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
761	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
762	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
763	ENDIF
764
765	!
766	!-- Read output time
767	IF ( netcdf_output .AND. id == 0 ) THEN
768	IF ( netcdf_1 ) THEN
769	READ ( id+110, END=999 ) simulated_time, time_step, av
770	ELSE
771	!
772	!-- For compatibility with earlier PALM versions
773	READ ( id+110, END=999 ) simulated_time, time_step
774	av = 0
775	ENDIF
776	ENDIF
777
778	!
779	!-- Read subdomain indices and grid point values
780	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
781	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
782	READ ( id+110 ) pf3d_tmp
783
784	xxa = MAX( nxa, xa )
785	xxe = MIN( nxe, xe )
786	yya = MAX( nya, ya )
787	yye = MIN( nye, ye )
788	DO k = za, ze
789	DO j = yya, yye
790	DO i = xxa, xxe
791	pf3d(i,j,k) = pf3d_tmp(i,j,k)
792	ENDDO
793	ENDDO
794	ENDDO
795
796	DEALLOCATE( pf3d_tmp )
797	IF ( id == 0 ) fanz(av) = fanz(av) + 1
798
799	ENDDO
800
801	!
802	!-- Write data of the total domain in NetCDF format
803	IF ( netcdf_output ) THEN
804	#if defined( __netcdf )
805	!
806	!-- Check if a new time step has begun; if yes write data to time
807	!-- axis
808	IF ( current_var(av) > num_var(av) ) THEN
809	current_var(av) = 1
810	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
811	(/ simulated_time /),&
812	start = (/ time_step /), count = (/ 1 /) )
813	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
814	ENDIF
815
816	!
817	!-- Now write the data
818	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
819	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
820	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
821	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
822
823	current_var(av) = current_var(av) + 1
824
825	#endif
826	ENDIF
827
828	ENDDO
829
830	ENDIF
831
832	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
833	!
834	!-- Print the number of arrays processed
835	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
836	IF ( fanz(1) /= 0 ) THEN
837	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
838	ENDIF
839	!
840	!-- Close all files and deallocate array
841	DO id = 0, danz-1
842	CLOSE ( id+110 )
843	ENDDO
844	CLOSE ( 2 )
845	DEALLOCATE ( pf3d )
846	!
847	!-- Close the NetCDF file
848	IF ( netcdf_output ) THEN
849	#if defined( __netcdf )
850	IF ( netcdf_0 ) THEN
851	nc_stat = NF90_CLOSE( id_set(0) )
852	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
853	ENDIF
854	IF ( netcdf_1 ) THEN
855	nc_stat = NF90_CLOSE( id_set(1) )
856	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
857	ENDIF
858	#endif
859	ENDIF
860
861	!
862	!-- Output required cpu time
863	CALL SYSTEM_CLOCK( count, count_rate )
864	cpu_end_time = REAL( count ) / REAL( count_rate )
865	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
866	cpu_end_time-cpu_start_time, ' sec'
867
868	ENDIF
869
870	ENDDO ! models
871
872
873	CONTAINS
874
875
876	SUBROUTINE handle_netcdf_error( errno )
877	!
878	!-- Prints out a text message corresponding to the current NetCDF status
879
880	IMPLICIT NONE
881
882	INTEGER, INTENT(IN) :: errno
883
884	#if defined( __netcdf )
885	IF ( nc_stat /= NF90_NOERR ) THEN
886	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
887	TRIM( nf90_strerror( nc_stat ) )
888	ENDIF
889	#endif
890
891	END SUBROUTINE handle_netcdf_error
892
893
894	END PROGRAM combine_plot_fields
895
896
897

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