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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 2393

Last change on this file since 2393 was 2365, checked in by kanani, 7 years ago
Vertical nesting implemented (SadiqHuq?)
Property svn:keywords set to `Id`
File size: 31.7 KB

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1	PROGRAM combine_plot_fields
2
3	!------------------------------------------------------------------------------!
4	! This file is part of PALM.
5	!
6	! PALM is free software: you can redistribute it and/or modify it under the terms
7	! of the GNU General Public License as published by the Free Software Foundation,
8	! either version 3 of the License, or (at your option) any later version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2014 Leibniz Universitaet Hannover
18	!--------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: combine_plot_fields.f90 2365 2017-08-21 14:59:59Z knoop $
27	! Vertical grid nesting implemented (SadiqHuq)
28	!
29	! 1809 2016-04-05 20:13:28Z raasch
30	!
31	! 1808 2016-04-05 19:44:00Z raasch
32	! cpu measurements are done with standard FORTRAN routine on every machine
33	!
34	! 1551 2015-03-03 14:18:16Z maronga
35	! Adjustments for data output of soil model quantities
36	!
37	! 1468 2014-09-24 14:06:57Z maronga
38	! Adapted for use on up to 6-digit processor cores (not tested)
39	!
40	! 1394 2014-05-06 10:17:31Z keck
41	! KIND-attribute added to all INTEGER and REAL declaration statements
42	!
43	! 1046 2012-11-09 14:38:45Z maronga
44	! code put under GPL (PALM 3.9)
45	!
46	! 691 2011-03-04 08:45:30Z maronga
47	! Bugfix: check for precursor ocean runs, removed typo
48	!
49	! 493 2010-03-01 08:30:24Z raasch
50	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
51	! cpu measurements included
52	!
53	! 210 2008-11-06 08:54:02Z raasch
54	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
55	! all three dimensions), because output of a subset of the data
56	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
57	! with the INTEL compiler.
58	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
59	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
60	! Bugfix: three misplaced #endif directives
61	!
62	! 114 2007-10-10 00:03:15Z raasch
63	! Bugfix: model_string needed a default value
64	!
65	! Aug 07 Loop for processing of output by coupled runs, id_string does not
66	! contain modus any longer
67	!
68	! 18/01/06 Output of time-averaged data
69	!
70	! 25/05/05 Errors removed
71	!
72	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
73	! file exists
74	!
75	! 31/10/01 All comments and messages translated into English
76	!
77	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
78	! Ursprungsversion vom 28/07/97
79	!
80	!
81	! Description:
82	! ------------
83	! This routine combines data of the PALM-subdomains into one file. In PALM
84	! every processor element opens its own file and writes 2D- or 3D-binary-data
85	! into it (different files are opened for xy-, xz-, yz-cross-sections and
86	! 3D-data). For plotting or analyzing these PE-data have to be collected and
87	! to be put into single files, which is done by this routine.
88	! Output format is NetCDF. Additionally, a data are output in a binary format
89	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
90	!------------------------------------------------------------------------------!
91
92	#if defined( __netcdf )
93	USE netcdf
94	#endif
95
96	IMPLICIT NONE
97
98	!
99	!-- Local variables
100	CHARACTER (LEN=2) :: modus, model_string
101	CHARACTER (LEN=6) :: id_string
102	CHARACTER (LEN=20) :: dimname, var_name
103	CHARACTER (LEN=40) :: filename
104
105	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
106
107	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
108
109	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
110	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
111	nza, nze, pos, time_step, &
112	xa, xe, xxa, xxe, ya, ya_do, ya_tot, ye, ye_do, ye_tot, yya, yye, za, &
113	ze, zza, zze
114
115	INTEGER(8) :: count, count_rate
116
117	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
118	fanz, id_set, id_var_time, num_var
119	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
120	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
121	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
122
123	LOGICAL :: avs_output, compressed, found, iso2d_output, netcdf_output, &
124	netcdf_parallel, netcdf_0, netcdf_1
125	LOGICAL :: vnest
126
127	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
128	REAL(wp), DIMENSION(:), ALLOCATABLE :: eta, ho, hu
129	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
130	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
131
132
133
134	PRINT*, ''
135	PRINT*, ''
136	PRINT, ' combine_plot_fields *'
137
138	!
139	!-- Find out if a coupled run has been carried out
140	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
141	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
142	IF ( found ) THEN
143	models = 2
144	PRINT*, ' coupled run'
145	ELSEIF ( vnest ) THEN
146	models = 2
147	PRINT*, ' Vertically nested grid coupling'
148	ELSE
149	models = 1
150	PRINT*, ' uncoupled run'
151	ENDIF
152
153	!
154	!-- Find out if a precursor ocean run has been carried out
155	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
156	IF ( found ) THEN
157	model_string = '_O'
158	PRINT*, ' precursor ocean run'
159	ELSE
160	model_string = ''
161	ENDIF
162
163	!
164	!-- Do everything for each model
165	DO model = 1, models
166	!
167	!-- Set the model string used to identify the filenames
168	IF ( models == 2 ) THEN
169	PRINT*, ''
170	PRINT, ' combine_plot_fields *'
171	IF ( model == 2 ) THEN
172	IF ( vnest ) THEN
173	model_string = '_N'
174	PRINT*, ' now combining FINE data'
175	PRINT*, ' ========================'
176	ELSE
177	model_string = '_O'
178	PRINT*, ' now combining ocean data'
179	PRINT*, ' ========================'
180	ENDIF
181	ELSE
182	IF ( vnest ) THEN
183	PRINT*, ' now combining COARSE data'
184	PRINT*, ' ============================='
185	ELSE
186	PRINT*, ' now combining atmosphere data'
187	PRINT*, ' ============================='
188	ENDIF
189	ENDIF
190	ENDIF
191	!
192	!-- 2D-arrays for ISO2D
193	!-- Main loop for the three different cross-sections, starting with
194	!-- xy-section
195	modus = 'XY'
196	PRINT*, ''
197	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
198	!
199	!-- Take current time
200	CALL SYSTEM_CLOCK( count, count_rate )
201	cpu_start_time = REAL( count ) / REAL( count_rate )
202
203	netcdf_parallel = .FALSE.
204	!
205	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
206	!-- create any output for this cross-section.
207	danz = 0
208	WRITE (id_string,'(I6.6)') danz
209	INQUIRE ( &
210	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
211	EXIST=found )
212	!
213	!-- Find out the number of files (equal to the number of PEs which
214	!-- have been used in PALM) and open them
215	DO WHILE ( found )
216
217	OPEN ( danz+110, &
218	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
219	FORM='UNFORMATTED' )
220	danz = danz + 1
221	WRITE (id_string,'(I6.6)') danz
222	INQUIRE ( &
223	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
224	EXIST=found )
225
226	ENDDO
227
228	!
229	!-- Inquire whether an iso2d parameter file exists
230	INQUIRE( FILE='PLOT2D_'//modus//'_GLOBAL'//TRIM( model_string ), &
231	EXIST=iso2d_output )
232
233	!
234	!-- Inquire whether a NetCDF file exists
235	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
236	EXIST=netcdf_0 )
237
238	!
239	!-- Inquire whether a NetCDF file for time-averaged data exists
240	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
241	EXIST=netcdf_1 )
242
243	IF ( netcdf_0 .OR. netcdf_1 ) THEN
244	netcdf_output = .TRUE.
245	!
246	!-- Inquire whether the NetCDF file is already complete (parallel
247	!-- output)
248	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
249	EXIST=netcdf_parallel )
250	IF ( netcdf_parallel ) THEN
251	netcdf_parallel = .TRUE.
252	ELSE
253	netcdf_parallel = .FALSE.
254	ENDIF
255	ELSE
256	netcdf_output = .FALSE.
257	ENDIF
258
259	!
260	!-- Info-output
261	PRINT*, ''
262	PRINT, ' combine_plot_fields *'
263	#if defined( __netcdf )
264	IF ( netcdf_output ) THEN
265	IF ( netcdf_parallel ) THEN
266	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
267	'(NetCDF4-format) - merging not neccessary'
268	ELSE
269	PRINT*, ' NetCDF output enabled'
270	ENDIF
271	ENDIF
272	#else
273	IF ( netcdf_output ) THEN
274	PRINT*, '--- Sorry, no NetCDF support on this host'
275	netcdf_output = .FALSE.
276	ENDIF
277	#endif
278	IF ( .NOT. netcdf_parallel ) THEN
279	IF ( danz /= 0 ) THEN
280	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
281	ELSE
282	PRINT*, ' no ', modus, '-section data available'
283	ENDIF
284	ENDIF
285
286	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
287	THEN
288	#if defined( __netcdf )
289	DO av = 0, 1
290
291	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
292	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
293
294	!
295	!-- Open NetCDF dataset
296	IF ( av == 0 ) THEN
297	filename = 'DATA_2D_'//modus//'_NETCDF' &
298	//TRIM( model_string )
299	ELSE
300	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
301	//TRIM( model_string )
302	ENDIF
303	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
304	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
305
306	!
307	!-- Get the list of variables (order of variables corresponds with
308	!-- the order of data on the binary file)
309	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
310	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
311	var_list(av) )
312	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
313
314	!
315	!-- Inquire id of the time coordinate variable
316	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
317	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
318
319	!
320	!-- Count number of variables; there is one more semicolon in the
321	!-- string than variable names
322	num_var(av) = -1
323	DO i = 1, LEN( var_list(av) )
324	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
325	ENDDO
326
327	!
328	!-- Extract the variable names from the list and inquire their
329	!-- NetCDF IDs
330	pos = INDEX( var_list(av), ';' )
331	!
332	!-- Loop over all variables
333	DO i = 1, num_var(av)
334
335	!
336	!-- Extract variable name from list
337	var_list(av) = var_list(av)(pos+1:)
338	pos = INDEX( var_list(av), ';' )
339	var_name = var_list(av)(1:pos-1)
340
341	!
342	!-- Get variable ID from name
343	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
344	id_var(av,i) )
345	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
346
347	!
348	!-- Get number of x/y/z levels for that variable
349	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
350	dimids = id_dims_loc )
351	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
352	id_dims(av,:) = id_dims_loc
353
354	!
355	!-- Inquire dimension ID
356	DO j = 1, 4
357	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
358	id_dims(av,j), dimname, levels(av,i) )
359	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
360
361	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
362	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
363	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
364	ENDDO
365
366	ENDDO
367
368	ENDDO ! av = 0, 1
369
370	#endif
371	ENDIF
372
373	!
374	!-- Read the arrays, as long as the end of the file is reached
375	IF ( .NOT. netcdf_parallel ) THEN
376
377	fanz = 0
378	current_level = 1
379	current_var = 999999999
380
381	DO WHILE ( danz /= 0 )
382
383	!
384	!-- Loop over all files (reading data of the subdomains)
385	DO id = 0, danz-1
386	!
387	!-- File from PE0 contains special information at the beginning,
388	!-- concerning the lower and upper indices of the total-domain
389	!-- used in PALM (nxag, nxeg, nyag, nyeg) and the lower and
390	!-- upper indices of the array to be written by this routine
391	!-- (nxa, nxe, nya, nye). Usually in the horizontal directions
392	!-- nxag=-1 and nxa=0 while all other variables have the same
393	!-- value (i.e. nxeg=nxe).
394	!-- Allocate necessary arrays, open the output file and write
395	!-- the coordinate informations needed by ISO2D.
396	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
397	READ ( id+110 ) nxag, nxeg, nyag, nyeg
398	READ ( id+110 ) nxa, nxe, nya, nye
399	ALLOCATE ( eta(nya:nye), ho(nxa:nxe), hu(nxa:nxe), &
400	pf(nxag:nxeg,nyag:nyeg) )
401	READ ( id+110 ) dx, eta, hu, ho
402
403
404	!
405	!-- Set actual domain bounds to total domain
406	ya_do = nya
407	ye_do = nye
408
409	IF ( iso2d_output ) THEN
410	OPEN ( 2, FILE='PLOT2D_'//modus//TRIM( model_string ),&
411	FORM='UNFORMATTED' )
412	WRITE ( 2 ) dx, eta, hu, ho
413	ENDIF
414	ENDIF
415	!
416	!-- Read output time
417	IF ( netcdf_output .AND. id == 0 ) THEN
418	IF ( netcdf_1 ) THEN
419	READ ( id+110, END=998 ) simulated_time, time_step, av
420	ELSE
421	!
422	!-- For compatibility with earlier PALM versions
423	READ ( id+110, END=998 ) simulated_time, time_step
424	av = 0
425	ENDIF
426	ENDIF
427	!
428	!-- Read subdomain indices
429	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
430
431	!
432	!-- IF the PE made no output (in case that no part of the
433	!-- cross-section is situated on this PE), indices have the
434	!-- value -1
435	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
436	ya == -1 .AND. ye == -1 ) ) THEN
437
438
439	!
440	!-- Read the subdomain grid-point values
441	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
442	READ ( id+110 ) pf_tmp
443	!
444	!-- Calculate indices on atmospheric grid (e.g. for soil model
445	!-- quantities)
446	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
447	ye_do = ye - ya
448	ya_do = ya
449	pf(xa:xe,ya_do:ye_do) = pf_tmp
450	ELSE
451	ye_do = nye
452	ya_do = nya
453	pf(xa:xe,ya:ye) = pf_tmp
454	ENDIF
455
456	DEALLOCATE( pf_tmp )
457	ENDIF
458	IF ( id == 0 ) fanz(av) = fanz(av) + 1
459
460	ENDDO
461	!
462	!-- Write the data of the total domain cross-section
463	IF ( iso2d_output ) WRITE ( 2 ) pf(nxa:nxe,nya:nye)
464
465	!
466	!-- Write same data in NetCDF format
467	IF ( netcdf_output ) THEN
468	#if defined( __netcdf )
469	!
470	!-- Check if a new time step has begun; if yes write data to
471	!-- time axis
472	IF ( current_var(av) > num_var(av) ) THEN
473	current_var(av) = 1
474	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
475	(/ simulated_time /), &
476	start = (/ time_step /), &
477	count = (/ 1 /) )
478	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
479	ENDIF
480
481	!
482	!-- Now write the data; this is mode dependent
483	SELECT CASE ( modus )
484
485	CASE ( 'XY' )
486	nc_stat = NF90_PUT_VAR( id_set(av), &
487	id_var(av,current_var(av)), &
488	pf(nxa:nxe,nya:nye), &
489	start = (/ 1, 1, current_level(av), time_step /), &
490	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
491	IF ( nc_stat /= NF90_NOERR ) THEN
492	CALL handle_netcdf_error( 8 )
493	ENDIF
494
495	CASE ( 'XZ' )
496	nc_stat = NF90_PUT_VAR( id_set(av), &
497	id_var(av,current_var(av)), &
498	pf(nxa:nxe,ya_do:ye_do), &
499	start = (/ 1, current_level(av), 1, time_step /), &
500	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
501	IF ( nc_stat /= NF90_NOERR ) THEN
502	CALL handle_netcdf_error( 9 )
503	ENDIF
504
505	CASE ( 'YZ' )
506	nc_stat = NF90_PUT_VAR( id_set(av), &
507	id_var(av,current_var(av)), &
508	pf(nxa:nxe,ya_do:ye_do), &
509	start = (/ current_level(av), 1, 1, time_step /), &
510	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
511	IF ( nc_stat /= NF90_NOERR ) THEN
512	CALL handle_netcdf_error( 10 )
513	ENDIF
514
515	END SELECT
516
517	!
518	!-- Data is written, check if max level is reached
519	current_level(av) = current_level(av) + 1
520	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
521	current_level(av) = 1
522	current_var(av) = current_var(av) + 1
523	ENDIF
524
525	#endif
526	ENDIF
527
528	ENDDO
529
530	ENDIF
531
532	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
533	!
534	!-- Print the number of the arrays processed
535	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
536	IF ( fanz(1) /= 0 ) THEN
537	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
538	ENDIF
539
540	!
541	!-- Close all files and deallocate arrays
542	DO id = 0, danz-1
543	CLOSE ( id+110 )
544	ENDDO
545	CLOSE ( 2 )
546	DEALLOCATE ( eta, ho, hu, pf )
547
548	!
549	!-- Close the NetCDF file
550	IF ( netcdf_output ) THEN
551	#if defined( __netcdf )
552	IF ( netcdf_0 ) THEN
553	nc_stat = NF90_CLOSE( id_set(0) )
554	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
555	ENDIF
556	IF ( netcdf_1 ) THEN
557	nc_stat = NF90_CLOSE( id_set(1) )
558	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
559	ENDIF
560	#endif
561	ENDIF
562	ENDIF
563
564	!
565	!-- Output required cpu time
566	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
567	CALL SYSTEM_CLOCK( count, count_rate )
568	cpu_end_time = REAL( count ) / REAL( count_rate )
569	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
570	cpu_end_time-cpu_start_time, ' sec'
571	ENDIF
572
573	!
574	!-- Choose the next cross-section
575	SELECT CASE ( modus )
576	CASE ( 'XY' )
577	modus = 'XZ'
578	CASE ( 'XZ' )
579	modus = 'YZ'
580	CASE ( 'YZ' )
581	modus = 'no'
582	END SELECT
583
584	ENDDO
585
586
587	!
588	!-- Combine the 3D-arrays
589	netcdf_parallel = .FALSE.
590
591	!
592	!-- Info-output
593	PRINT*, ' '
594	PRINT, ' combine_plot_fields *'
595
596	!
597	!-- Take current time
598	CALL SYSTEM_CLOCK( count, count_rate )
599	cpu_start_time = REAL( count ) / REAL( count_rate )
600
601	!
602	!-- Inquire whether an avs fld file exists
603	INQUIRE( FILE='PLOT3D_FLD'//TRIM( model_string ), EXIST=avs_output )
604
605	!
606	!-- Inquire whether a NetCDF file exists
607	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
608
609	!
610	!-- Inquire whether a NetCDF file for time-averaged data exists
611	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
612
613	IF ( netcdf_0 .OR. netcdf_1 ) THEN
614	netcdf_output = .TRUE.
615	!
616	!-- Inquire whether the NetCDF file is already complete (parallel output)
617	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
618	IF ( netcdf_parallel ) THEN
619	netcdf_parallel = .TRUE.
620	ELSE
621	netcdf_parallel = .FALSE.
622	ENDIF
623	ELSE
624	netcdf_output = .FALSE.
625	ENDIF
626
627	!
628	!-- Check, if file from PE0 exists; not neccessary in case of parallel
629	!-- PALM output
630	IF ( .NOT. netcdf_parallel ) THEN
631	danz = 0
632	WRITE (id_string,'(I6.6)') danz
633	INQUIRE ( &
634	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
635	EXIST=found )
636	ELSE
637	found = .FALSE.
638	ENDIF
639
640	!
641	!-- Combination only works, if data are not compressed. In that case,
642	!-- PALM created a flag file (PLOT3D_COMPRESSED)
643	INQUIRE ( FILE='PLOT3D_COMPRESSED'//TRIM( model_string ), &
644	EXIST=compressed )
645
646	!
647	!-- Find out the number of files and open them
648	DO WHILE ( found .AND. .NOT. compressed )
649
650	OPEN ( danz+110, &
651	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
652	FORM='UNFORMATTED')
653	danz = danz + 1
654	WRITE (id_string,'(I6.6)') danz
655	INQUIRE ( &
656	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
657	EXIST=found )
658
659	ENDDO
660
661	#if defined( __netcdf )
662	IF ( netcdf_output ) THEN
663	IF ( netcdf_parallel ) THEN
664	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
665	' - merging not neccessary'
666	ELSE
667	PRINT*, ' NetCDF output enabled'
668	ENDIF
669	ENDIF
670	#else
671	IF ( netcdf_output ) THEN
672	PRINT*, '--- Sorry, no NetCDF support on this host'
673	netcdf_output = .FALSE.
674	ENDIF
675	#endif
676	IF ( .NOT. netcdf_parallel ) THEN
677	IF ( danz /= 0 ) THEN
678	PRINT*, ' 3D-data: ', danz, ' file(s) found'
679	ELSE
680	IF ( found .AND. compressed ) THEN
681	PRINT*, '+++ no 3D-data processing, since data are compressed'
682	ELSE
683	PRINT*, ' no 3D-data file available'
684	ENDIF
685	ENDIF
686	ENDIF
687
688	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
689	#if defined( __netcdf )
690	DO av = 0, 1
691
692	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
693	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
694
695	!
696	!-- Open NetCDF dataset
697	IF ( av == 0 ) THEN
698	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
699	ELSE
700	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
701	ENDIF
702	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
703	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
704
705
706	!
707	!-- Get the list of variables (order of variables corresponds with the
708	!-- order of data on the binary file)
709	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
710	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
711	var_list(av) )
712	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
713
714	!
715	!-- Inquire id of the time coordinate variable
716	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
717	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
718
719	!
720	!-- Count number of variables; there is one more semicolon in the
721	!-- string than variable names
722	num_var(av) = -1
723	DO i = 1, LEN( var_list(av) )
724	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
725	ENDDO
726
727	!
728	!-- Extract the variable names from the list and inquire their NetCDF
729	!-- IDs
730	pos = INDEX( var_list(av), ';' )
731	!
732	!-- Loop over all variables
733	DO i = 1, num_var(av)
734
735	!
736	!-- Extract variable name from list
737	var_list(av) = var_list(av)(pos+1:)
738	pos = INDEX( var_list(av), ';' )
739	var_name = var_list(av)(1:pos-1)
740
741	!
742	!-- Get variable ID from name
743	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
744	id_var(av,i) )
745	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
746
747	ENDDO
748
749	ENDDO ! av=0,1
750
751	#endif
752	ENDIF
753
754	!
755	!-- Read arrays, until the end of the file is reached
756	IF ( .NOT. netcdf_parallel ) THEN
757
758	current_var = 999999999
759	fanz = 0
760	DO WHILE ( danz /= 0 )
761
762	!
763	!-- Loop over all files
764	DO id = 0, danz-1
765	!
766	!-- File from PE0 contains special information at the beginning,
767	!-- concerning the lower and upper indices of the total-domain used
768	!-- in PALM (nxag, nxeg, nyag, nyeg) and the lower and
769	!-- upper indices of the array to be written by this routine (nxa,
770	!-- nxe, nya, nye, nza, nze). Usually nxag=-1 and nxa=0, nyag=-1
771	!-- and nya=0, nzeg=nz and nze=nz_do3d.
772	!-- Allocate necessary array and open the output file.
773	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
774	READ ( id+110 ) nxag, nxeg, nyag, nyeg
775	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
776	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
777	IF ( avs_output ) THEN
778	OPEN ( 2, FILE='PLOT3D_DATA'//TRIM( model_string ), &
779	FORM='UNFORMATTED' )
780	ENDIF
781	ENDIF
782
783	!
784	!-- Read output time
785	IF ( netcdf_output .AND. id == 0 ) THEN
786	IF ( netcdf_1 ) THEN
787	READ ( id+110, END=999 ) simulated_time, time_step, av
788	ELSE
789	!
790	!-- For compatibility with earlier PALM versions
791	READ ( id+110, END=999 ) simulated_time, time_step
792	av = 0
793	ENDIF
794	ENDIF
795
796	!
797	!-- Read subdomain indices and grid point values
798	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
799	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
800	READ ( id+110 ) pf3d_tmp
801
802	xxa = MAX( nxa, xa )
803	xxe = MIN( nxe, xe )
804	yya = MAX( nya, ya )
805	yye = MIN( nye, ye )
806	DO k = za, ze
807	DO j = yya, yye
808	DO i = xxa, xxe
809	pf3d(i,j,k) = pf3d_tmp(i,j,k)
810	ENDDO
811	ENDDO
812	ENDDO
813
814	DEALLOCATE( pf3d_tmp )
815	IF ( id == 0 ) fanz(av) = fanz(av) + 1
816
817	ENDDO
818
819	!
820	!-- Write data of the total domain
821	IF ( avs_output ) WRITE ( 2 ) pf3d(nxa:nxe,nya:nye,nza:nze)
822
823	!
824	!-- Write same data in NetCDF format
825	IF ( netcdf_output ) THEN
826	#if defined( __netcdf )
827	!
828	!-- Check if a new time step has begun; if yes write data to time
829	!-- axis
830	IF ( current_var(av) > num_var(av) ) THEN
831	current_var(av) = 1
832	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
833	(/ simulated_time /),&
834	start = (/ time_step /), count = (/ 1 /) )
835	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
836	ENDIF
837
838	!
839	!-- Now write the data
840	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
841	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
842	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
843	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
844
845	current_var(av) = current_var(av) + 1
846
847	#endif
848	ENDIF
849
850	ENDDO
851
852	ENDIF
853
854	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
855	!
856	!-- Print the number of arrays processed
857	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
858	IF ( fanz(1) /= 0 ) THEN
859	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
860	ENDIF
861	!
862	!-- Close all files and deallocate array
863	DO id = 0, danz-1
864	CLOSE ( id+110 )
865	ENDDO
866	CLOSE ( 2 )
867	DEALLOCATE ( pf3d )
868	!
869	!-- Close the NetCDF file
870	IF ( netcdf_output ) THEN
871	#if defined( __netcdf )
872	IF ( netcdf_0 ) THEN
873	nc_stat = NF90_CLOSE( id_set(0) )
874	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
875	ENDIF
876	IF ( netcdf_1 ) THEN
877	nc_stat = NF90_CLOSE( id_set(1) )
878	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
879	ENDIF
880	#endif
881	ENDIF
882
883	!
884	!-- Output required cpu time
885	CALL SYSTEM_CLOCK( count, count_rate )
886	cpu_end_time = REAL( count ) / REAL( count_rate )
887	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
888	cpu_end_time-cpu_start_time, ' sec'
889
890	ENDIF
891
892	ENDDO ! models
893
894
895	CONTAINS
896
897
898	SUBROUTINE handle_netcdf_error( errno )
899	!
900	!-- Prints out a text message corresponding to the current NetCDF status
901
902	IMPLICIT NONE
903
904	INTEGER, INTENT(IN) :: errno
905
906	#if defined( __netcdf )
907	IF ( nc_stat /= NF90_NOERR ) THEN
908	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
909	TRIM( nf90_strerror( nc_stat ) )
910	ENDIF
911	#endif
912
913	END SUBROUTINE handle_netcdf_error
914
915
916	END PROGRAM combine_plot_fields
917
918
919

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