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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 2280

Last change on this file since 2280 was 1809, checked in by raasch, 9 years ago
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1	PROGRAM combine_plot_fields
2
3	!------------------------------------------------------------------------------!
4	! This file is part of PALM.
5	!
6	! PALM is free software: you can redistribute it and/or modify it under the terms
7	! of the GNU General Public License as published by the Free Software Foundation,
8	! either version 3 of the License, or (at your option) any later version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2014 Leibniz Universitaet Hannover
18	!--------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: combine_plot_fields.f90 1809 2016-04-05 20:13:28Z suehring $
27	!
28	! 1808 2016-04-05 19:44:00Z raasch
29	! cpu measurements are done with standard FORTRAN routine on every machine
30	!
31	! 1551 2015-03-03 14:18:16Z maronga
32	! Adjustments for data output of soil model quantities
33	!
34	! 1468 2014-09-24 14:06:57Z maronga
35	! Adapted for use on up to 6-digit processor cores (not tested)
36	!
37	! 1394 2014-05-06 10:17:31Z keck
38	! KIND-attribute added to all INTEGER and REAL declaration statements
39	!
40	! 1046 2012-11-09 14:38:45Z maronga
41	! code put under GPL (PALM 3.9)
42	!
43	! 691 2011-03-04 08:45:30Z maronga
44	! Bugfix: check for precursor ocean runs, removed typo
45	!
46	! 493 2010-03-01 08:30:24Z raasch
47	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
48	! cpu measurements included
49	!
50	! 210 2008-11-06 08:54:02Z raasch
51	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
52	! all three dimensions), because output of a subset of the data
53	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
54	! with the INTEL compiler.
55	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
56	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
57	! Bugfix: three misplaced #endif directives
58	!
59	! 114 2007-10-10 00:03:15Z raasch
60	! Bugfix: model_string needed a default value
61	!
62	! Aug 07 Loop for processing of output by coupled runs, id_string does not
63	! contain modus any longer
64	!
65	! 18/01/06 Output of time-averaged data
66	!
67	! 25/05/05 Errors removed
68	!
69	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
70	! file exists
71	!
72	! 31/10/01 All comments and messages translated into English
73	!
74	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
75	! Ursprungsversion vom 28/07/97
76	!
77	!
78	! Description:
79	! ------------
80	! This routine combines data of the PALM-subdomains into one file. In PALM
81	! every processor element opens its own file and writes 2D- or 3D-binary-data
82	! into it (different files are opened for xy-, xz-, yz-cross-sections and
83	! 3D-data). For plotting or analyzing these PE-data have to be collected and
84	! to be put into single files, which is done by this routine.
85	! Output format is NetCDF. Additionally, a data are output in a binary format
86	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
87	!------------------------------------------------------------------------------!
88
89	#if defined( __netcdf )
90	USE netcdf
91	#endif
92
93	IMPLICIT NONE
94
95	!
96	!-- Local variables
97	CHARACTER (LEN=2) :: modus, model_string
98	CHARACTER (LEN=6) :: id_string
99	CHARACTER (LEN=20) :: dimname, var_name
100	CHARACTER (LEN=40) :: filename
101
102	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
103
104	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
105
106	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
107	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
108	nza, nze, pos, time_step, &
109	xa, xe, xxa, xxe, ya, ya_do, ya_tot, ye, ye_do, ye_tot, yya, yye, za, &
110	ze, zza, zze
111
112	INTEGER(8) :: count, count_rate
113
114	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
115	fanz, id_set, id_var_time, num_var
116	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
117	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
118	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
119
120	LOGICAL :: avs_output, compressed, found, iso2d_output, netcdf_output, &
121	netcdf_parallel, netcdf_0, netcdf_1
122
123	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
124	REAL(wp), DIMENSION(:), ALLOCATABLE :: eta, ho, hu
125	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
126	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
127
128	PRINT*, ''
129	PRINT*, ''
130	PRINT, ' combine_plot_fields *'
131
132	!
133	!-- Find out if a coupled run has been carried out
134	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
135	IF ( found ) THEN
136	models = 2
137	PRINT*, ' coupled run'
138	ELSE
139	models = 1
140	PRINT*, ' uncoupled run'
141	ENDIF
142
143	!
144	!-- Find out if a precursor ocean run has been carried out
145	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
146	IF ( found ) THEN
147	model_string = '_O'
148	PRINT*, ' precursor ocean run'
149	ELSE
150	model_string = ''
151	ENDIF
152
153	!
154	!-- Do everything for each model
155	DO model = 1, models
156	!
157	!-- Set the model string used to identify the filenames
158	IF ( models == 2 ) THEN
159	PRINT*, ''
160	PRINT, ' combine_plot_fields *'
161	IF ( model == 2 ) THEN
162	model_string = '_O'
163	PRINT*, ' now combining ocean data'
164	PRINT*, ' ========================'
165	ELSE
166	PRINT*, ' now combining atmosphere data'
167	PRINT*, ' ============================='
168	ENDIF
169	ENDIF
170	!
171	!-- 2D-arrays for ISO2D
172	!-- Main loop for the three different cross-sections, starting with
173	!-- xy-section
174	modus = 'XY'
175	PRINT*, ''
176	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
177	!
178	!-- Take current time
179	CALL SYSTEM_CLOCK( count, count_rate )
180	cpu_start_time = REAL( count ) / REAL( count_rate )
181
182	netcdf_parallel = .FALSE.
183	!
184	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
185	!-- create any output for this cross-section.
186	danz = 0
187	WRITE (id_string,'(I6.6)') danz
188	INQUIRE ( &
189	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
190	EXIST=found )
191	!
192	!-- Find out the number of files (equal to the number of PEs which
193	!-- have been used in PALM) and open them
194	DO WHILE ( found )
195
196	OPEN ( danz+110, &
197	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
198	FORM='UNFORMATTED' )
199	danz = danz + 1
200	WRITE (id_string,'(I6.6)') danz
201	INQUIRE ( &
202	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
203	EXIST=found )
204
205	ENDDO
206
207	!
208	!-- Inquire whether an iso2d parameter file exists
209	INQUIRE( FILE='PLOT2D_'//modus//'_GLOBAL'//TRIM( model_string ), &
210	EXIST=iso2d_output )
211
212	!
213	!-- Inquire whether a NetCDF file exists
214	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
215	EXIST=netcdf_0 )
216
217	!
218	!-- Inquire whether a NetCDF file for time-averaged data exists
219	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
220	EXIST=netcdf_1 )
221
222	IF ( netcdf_0 .OR. netcdf_1 ) THEN
223	netcdf_output = .TRUE.
224	!
225	!-- Inquire whether the NetCDF file is already complete (parallel
226	!-- output)
227	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
228	EXIST=netcdf_parallel )
229	IF ( netcdf_parallel ) THEN
230	netcdf_parallel = .TRUE.
231	ELSE
232	netcdf_parallel = .FALSE.
233	ENDIF
234	ELSE
235	netcdf_output = .FALSE.
236	ENDIF
237
238	!
239	!-- Info-output
240	PRINT*, ''
241	PRINT, ' combine_plot_fields *'
242	#if defined( __netcdf )
243	IF ( netcdf_output ) THEN
244	IF ( netcdf_parallel ) THEN
245	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
246	'(NetCDF4-format) - merging not neccessary'
247	ELSE
248	PRINT*, ' NetCDF output enabled'
249	ENDIF
250	ENDIF
251	#else
252	IF ( netcdf_output ) THEN
253	PRINT*, '--- Sorry, no NetCDF support on this host'
254	netcdf_output = .FALSE.
255	ENDIF
256	#endif
257	IF ( .NOT. netcdf_parallel ) THEN
258	IF ( danz /= 0 ) THEN
259	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
260	ELSE
261	PRINT*, ' no ', modus, '-section data available'
262	ENDIF
263	ENDIF
264
265	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
266	THEN
267	#if defined( __netcdf )
268	DO av = 0, 1
269
270	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
271	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
272
273	!
274	!-- Open NetCDF dataset
275	IF ( av == 0 ) THEN
276	filename = 'DATA_2D_'//modus//'_NETCDF' &
277	//TRIM( model_string )
278	ELSE
279	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
280	//TRIM( model_string )
281	ENDIF
282	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
283	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
284
285	!
286	!-- Get the list of variables (order of variables corresponds with
287	!-- the order of data on the binary file)
288	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
289	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
290	var_list(av) )
291	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
292
293	!
294	!-- Inquire id of the time coordinate variable
295	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
296	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
297
298	!
299	!-- Count number of variables; there is one more semicolon in the
300	!-- string than variable names
301	num_var(av) = -1
302	DO i = 1, LEN( var_list(av) )
303	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
304	ENDDO
305
306	!
307	!-- Extract the variable names from the list and inquire their
308	!-- NetCDF IDs
309	pos = INDEX( var_list(av), ';' )
310	!
311	!-- Loop over all variables
312	DO i = 1, num_var(av)
313
314	!
315	!-- Extract variable name from list
316	var_list(av) = var_list(av)(pos+1:)
317	pos = INDEX( var_list(av), ';' )
318	var_name = var_list(av)(1:pos-1)
319
320	!
321	!-- Get variable ID from name
322	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
323	id_var(av,i) )
324	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
325
326	!
327	!-- Get number of x/y/z levels for that variable
328	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
329	dimids = id_dims_loc )
330	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
331	id_dims(av,:) = id_dims_loc
332
333	!
334	!-- Inquire dimension ID
335	DO j = 1, 4
336	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
337	id_dims(av,j), dimname, levels(av,i) )
338	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
339
340	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
341	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
342	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
343	ENDDO
344
345	ENDDO
346
347	ENDDO ! av = 0, 1
348
349	#endif
350	ENDIF
351
352	!
353	!-- Read the arrays, as long as the end of the file is reached
354	IF ( .NOT. netcdf_parallel ) THEN
355
356	fanz = 0
357	current_level = 1
358	current_var = 999999999
359
360	DO WHILE ( danz /= 0 )
361
362	!
363	!-- Loop over all files (reading data of the subdomains)
364	DO id = 0, danz-1
365	!
366	!-- File from PE0 contains special information at the beginning,
367	!-- concerning the lower and upper indices of the total-domain
368	!-- used in PALM (nxag, nxeg, nyag, nyeg) and the lower and
369	!-- upper indices of the array to be written by this routine
370	!-- (nxa, nxe, nya, nye). Usually in the horizontal directions
371	!-- nxag=-1 and nxa=0 while all other variables have the same
372	!-- value (i.e. nxeg=nxe).
373	!-- Allocate necessary arrays, open the output file and write
374	!-- the coordinate informations needed by ISO2D.
375	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
376	READ ( id+110 ) nxag, nxeg, nyag, nyeg
377	READ ( id+110 ) nxa, nxe, nya, nye
378	ALLOCATE ( eta(nya:nye), ho(nxa:nxe), hu(nxa:nxe), &
379	pf(nxag:nxeg,nyag:nyeg) )
380	READ ( id+110 ) dx, eta, hu, ho
381
382
383	!
384	!-- Set actual domain bounds to total domain
385	ya_do = nya
386	ye_do = nye
387
388	IF ( iso2d_output ) THEN
389	OPEN ( 2, FILE='PLOT2D_'//modus//TRIM( model_string ),&
390	FORM='UNFORMATTED' )
391	WRITE ( 2 ) dx, eta, hu, ho
392	ENDIF
393	ENDIF
394	!
395	!-- Read output time
396	IF ( netcdf_output .AND. id == 0 ) THEN
397	IF ( netcdf_1 ) THEN
398	READ ( id+110, END=998 ) simulated_time, time_step, av
399	ELSE
400	!
401	!-- For compatibility with earlier PALM versions
402	READ ( id+110, END=998 ) simulated_time, time_step
403	av = 0
404	ENDIF
405	ENDIF
406	!
407	!-- Read subdomain indices
408	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
409
410	!
411	!-- IF the PE made no output (in case that no part of the
412	!-- cross-section is situated on this PE), indices have the
413	!-- value -1
414	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
415	ya == -1 .AND. ye == -1 ) ) THEN
416
417
418	!
419	!-- Read the subdomain grid-point values
420	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
421	READ ( id+110 ) pf_tmp
422	!
423	!-- Calculate indices on atmospheric grid (e.g. for soil model
424	!-- quantities)
425	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
426	ye_do = ye - ya
427	ya_do = ya
428	pf(xa:xe,ya_do:ye_do) = pf_tmp
429	ELSE
430	ye_do = nye
431	ya_do = nya
432	pf(xa:xe,ya:ye) = pf_tmp
433	ENDIF
434
435	DEALLOCATE( pf_tmp )
436	ENDIF
437	IF ( id == 0 ) fanz(av) = fanz(av) + 1
438
439	ENDDO
440	!
441	!-- Write the data of the total domain cross-section
442	IF ( iso2d_output ) WRITE ( 2 ) pf(nxa:nxe,nya:nye)
443
444	!
445	!-- Write same data in NetCDF format
446	IF ( netcdf_output ) THEN
447	#if defined( __netcdf )
448	!
449	!-- Check if a new time step has begun; if yes write data to
450	!-- time axis
451	IF ( current_var(av) > num_var(av) ) THEN
452	current_var(av) = 1
453	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
454	(/ simulated_time /), &
455	start = (/ time_step /), &
456	count = (/ 1 /) )
457	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
458	ENDIF
459
460	!
461	!-- Now write the data; this is mode dependent
462	SELECT CASE ( modus )
463
464	CASE ( 'XY' )
465	nc_stat = NF90_PUT_VAR( id_set(av), &
466	id_var(av,current_var(av)), &
467	pf(nxa:nxe,nya:nye), &
468	start = (/ 1, 1, current_level(av), time_step /), &
469	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
470	IF ( nc_stat /= NF90_NOERR ) THEN
471	CALL handle_netcdf_error( 8 )
472	ENDIF
473
474	CASE ( 'XZ' )
475	nc_stat = NF90_PUT_VAR( id_set(av), &
476	id_var(av,current_var(av)), &
477	pf(nxa:nxe,ya_do:ye_do), &
478	start = (/ 1, current_level(av), 1, time_step /), &
479	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
480	IF ( nc_stat /= NF90_NOERR ) THEN
481	CALL handle_netcdf_error( 9 )
482	ENDIF
483
484	CASE ( 'YZ' )
485	nc_stat = NF90_PUT_VAR( id_set(av), &
486	id_var(av,current_var(av)), &
487	pf(nxa:nxe,ya_do:ye_do), &
488	start = (/ current_level(av), 1, 1, time_step /), &
489	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
490	IF ( nc_stat /= NF90_NOERR ) THEN
491	CALL handle_netcdf_error( 10 )
492	ENDIF
493
494	END SELECT
495
496	!
497	!-- Data is written, check if max level is reached
498	current_level(av) = current_level(av) + 1
499	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
500	current_level(av) = 1
501	current_var(av) = current_var(av) + 1
502	ENDIF
503
504	#endif
505	ENDIF
506
507	ENDDO
508
509	ENDIF
510
511	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
512	!
513	!-- Print the number of the arrays processed
514	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
515	IF ( fanz(1) /= 0 ) THEN
516	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
517	ENDIF
518
519	!
520	!-- Close all files and deallocate arrays
521	DO id = 0, danz-1
522	CLOSE ( id+110 )
523	ENDDO
524	CLOSE ( 2 )
525	DEALLOCATE ( eta, ho, hu, pf )
526
527	!
528	!-- Close the NetCDF file
529	IF ( netcdf_output ) THEN
530	#if defined( __netcdf )
531	IF ( netcdf_0 ) THEN
532	nc_stat = NF90_CLOSE( id_set(0) )
533	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
534	ENDIF
535	IF ( netcdf_1 ) THEN
536	nc_stat = NF90_CLOSE( id_set(1) )
537	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
538	ENDIF
539	#endif
540	ENDIF
541	ENDIF
542
543	!
544	!-- Output required cpu time
545	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
546	CALL SYSTEM_CLOCK( count, count_rate )
547	cpu_end_time = REAL( count ) / REAL( count_rate )
548	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
549	cpu_end_time-cpu_start_time, ' sec'
550	ENDIF
551
552	!
553	!-- Choose the next cross-section
554	SELECT CASE ( modus )
555	CASE ( 'XY' )
556	modus = 'XZ'
557	CASE ( 'XZ' )
558	modus = 'YZ'
559	CASE ( 'YZ' )
560	modus = 'no'
561	END SELECT
562
563	ENDDO
564
565
566	!
567	!-- Combine the 3D-arrays
568	netcdf_parallel = .FALSE.
569
570	!
571	!-- Info-output
572	PRINT*, ' '
573	PRINT, ' combine_plot_fields *'
574
575	!
576	!-- Take current time
577	CALL SYSTEM_CLOCK( count, count_rate )
578	cpu_start_time = REAL( count ) / REAL( count_rate )
579
580	!
581	!-- Inquire whether an avs fld file exists
582	INQUIRE( FILE='PLOT3D_FLD'//TRIM( model_string ), EXIST=avs_output )
583
584	!
585	!-- Inquire whether a NetCDF file exists
586	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
587
588	!
589	!-- Inquire whether a NetCDF file for time-averaged data exists
590	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
591
592	IF ( netcdf_0 .OR. netcdf_1 ) THEN
593	netcdf_output = .TRUE.
594	!
595	!-- Inquire whether the NetCDF file is already complete (parallel output)
596	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
597	IF ( netcdf_parallel ) THEN
598	netcdf_parallel = .TRUE.
599	ELSE
600	netcdf_parallel = .FALSE.
601	ENDIF
602	ELSE
603	netcdf_output = .FALSE.
604	ENDIF
605
606	!
607	!-- Check, if file from PE0 exists; not neccessary in case of parallel
608	!-- PALM output
609	IF ( .NOT. netcdf_parallel ) THEN
610	danz = 0
611	WRITE (id_string,'(I6.6)') danz
612	INQUIRE ( &
613	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
614	EXIST=found )
615	ELSE
616	found = .FALSE.
617	ENDIF
618
619	!
620	!-- Combination only works, if data are not compressed. In that case,
621	!-- PALM created a flag file (PLOT3D_COMPRESSED)
622	INQUIRE ( FILE='PLOT3D_COMPRESSED'//TRIM( model_string ), &
623	EXIST=compressed )
624
625	!
626	!-- Find out the number of files and open them
627	DO WHILE ( found .AND. .NOT. compressed )
628
629	OPEN ( danz+110, &
630	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
631	FORM='UNFORMATTED')
632	danz = danz + 1
633	WRITE (id_string,'(I6.6)') danz
634	INQUIRE ( &
635	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
636	EXIST=found )
637
638	ENDDO
639
640	#if defined( __netcdf )
641	IF ( netcdf_output ) THEN
642	IF ( netcdf_parallel ) THEN
643	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
644	' - merging not neccessary'
645	ELSE
646	PRINT*, ' NetCDF output enabled'
647	ENDIF
648	ENDIF
649	#else
650	IF ( netcdf_output ) THEN
651	PRINT*, '--- Sorry, no NetCDF support on this host'
652	netcdf_output = .FALSE.
653	ENDIF
654	#endif
655	IF ( .NOT. netcdf_parallel ) THEN
656	IF ( danz /= 0 ) THEN
657	PRINT*, ' 3D-data: ', danz, ' file(s) found'
658	ELSE
659	IF ( found .AND. compressed ) THEN
660	PRINT*, '+++ no 3D-data processing, since data are compressed'
661	ELSE
662	PRINT*, ' no 3D-data file available'
663	ENDIF
664	ENDIF
665	ENDIF
666
667	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
668	#if defined( __netcdf )
669	DO av = 0, 1
670
671	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
672	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
673
674	!
675	!-- Open NetCDF dataset
676	IF ( av == 0 ) THEN
677	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
678	ELSE
679	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
680	ENDIF
681	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
682	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
683
684
685	!
686	!-- Get the list of variables (order of variables corresponds with the
687	!-- order of data on the binary file)
688	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
689	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
690	var_list(av) )
691	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
692
693	!
694	!-- Inquire id of the time coordinate variable
695	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
696	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
697
698	!
699	!-- Count number of variables; there is one more semicolon in the
700	!-- string than variable names
701	num_var(av) = -1
702	DO i = 1, LEN( var_list(av) )
703	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
704	ENDDO
705
706	!
707	!-- Extract the variable names from the list and inquire their NetCDF
708	!-- IDs
709	pos = INDEX( var_list(av), ';' )
710	!
711	!-- Loop over all variables
712	DO i = 1, num_var(av)
713
714	!
715	!-- Extract variable name from list
716	var_list(av) = var_list(av)(pos+1:)
717	pos = INDEX( var_list(av), ';' )
718	var_name = var_list(av)(1:pos-1)
719
720	!
721	!-- Get variable ID from name
722	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
723	id_var(av,i) )
724	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
725
726	ENDDO
727
728	ENDDO ! av=0,1
729
730	#endif
731	ENDIF
732
733	!
734	!-- Read arrays, until the end of the file is reached
735	IF ( .NOT. netcdf_parallel ) THEN
736
737	current_var = 999999999
738	fanz = 0
739	DO WHILE ( danz /= 0 )
740
741	!
742	!-- Loop over all files
743	DO id = 0, danz-1
744	!
745	!-- File from PE0 contains special information at the beginning,
746	!-- concerning the lower and upper indices of the total-domain used
747	!-- in PALM (nxag, nxeg, nyag, nyeg) and the lower and
748	!-- upper indices of the array to be written by this routine (nxa,
749	!-- nxe, nya, nye, nza, nze). Usually nxag=-1 and nxa=0, nyag=-1
750	!-- and nya=0, nzeg=nz and nze=nz_do3d.
751	!-- Allocate necessary array and open the output file.
752	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
753	READ ( id+110 ) nxag, nxeg, nyag, nyeg
754	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
755	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
756	IF ( avs_output ) THEN
757	OPEN ( 2, FILE='PLOT3D_DATA'//TRIM( model_string ), &
758	FORM='UNFORMATTED' )
759	ENDIF
760	ENDIF
761
762	!
763	!-- Read output time
764	IF ( netcdf_output .AND. id == 0 ) THEN
765	IF ( netcdf_1 ) THEN
766	READ ( id+110, END=999 ) simulated_time, time_step, av
767	ELSE
768	!
769	!-- For compatibility with earlier PALM versions
770	READ ( id+110, END=999 ) simulated_time, time_step
771	av = 0
772	ENDIF
773	ENDIF
774
775	!
776	!-- Read subdomain indices and grid point values
777	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
778	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
779	READ ( id+110 ) pf3d_tmp
780
781	xxa = MAX( nxa, xa )
782	xxe = MIN( nxe, xe )
783	yya = MAX( nya, ya )
784	yye = MIN( nye, ye )
785	DO k = za, ze
786	DO j = yya, yye
787	DO i = xxa, xxe
788	pf3d(i,j,k) = pf3d_tmp(i,j,k)
789	ENDDO
790	ENDDO
791	ENDDO
792
793	DEALLOCATE( pf3d_tmp )
794	IF ( id == 0 ) fanz(av) = fanz(av) + 1
795
796	ENDDO
797
798	!
799	!-- Write data of the total domain
800	IF ( avs_output ) WRITE ( 2 ) pf3d(nxa:nxe,nya:nye,nza:nze)
801
802	!
803	!-- Write same data in NetCDF format
804	IF ( netcdf_output ) THEN
805	#if defined( __netcdf )
806	!
807	!-- Check if a new time step has begun; if yes write data to time
808	!-- axis
809	IF ( current_var(av) > num_var(av) ) THEN
810	current_var(av) = 1
811	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
812	(/ simulated_time /),&
813	start = (/ time_step /), count = (/ 1 /) )
814	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
815	ENDIF
816
817	!
818	!-- Now write the data
819	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
820	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
821	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
822	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
823
824	current_var(av) = current_var(av) + 1
825
826	#endif
827	ENDIF
828
829	ENDDO
830
831	ENDIF
832
833	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
834	!
835	!-- Print the number of arrays processed
836	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
837	IF ( fanz(1) /= 0 ) THEN
838	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
839	ENDIF
840	!
841	!-- Close all files and deallocate array
842	DO id = 0, danz-1
843	CLOSE ( id+110 )
844	ENDDO
845	CLOSE ( 2 )
846	DEALLOCATE ( pf3d )
847	!
848	!-- Close the NetCDF file
849	IF ( netcdf_output ) THEN
850	#if defined( __netcdf )
851	IF ( netcdf_0 ) THEN
852	nc_stat = NF90_CLOSE( id_set(0) )
853	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
854	ENDIF
855	IF ( netcdf_1 ) THEN
856	nc_stat = NF90_CLOSE( id_set(1) )
857	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
858	ENDIF
859	#endif
860	ENDIF
861
862	!
863	!-- Output required cpu time
864	CALL SYSTEM_CLOCK( count, count_rate )
865	cpu_end_time = REAL( count ) / REAL( count_rate )
866	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
867	cpu_end_time-cpu_start_time, ' sec'
868
869	ENDIF
870
871	ENDDO ! models
872
873
874	CONTAINS
875
876
877	SUBROUTINE handle_netcdf_error( errno )
878	!
879	!-- Prints out a text message corresponding to the current NetCDF status
880
881	IMPLICIT NONE
882
883	INTEGER, INTENT(IN) :: errno
884
885	#if defined( __netcdf )
886	IF ( nc_stat /= NF90_NOERR ) THEN
887	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
888	TRIM( nf90_strerror( nc_stat ) )
889	ENDIF
890	#endif
891
892	END SUBROUTINE handle_netcdf_error
893
894
895	END PROGRAM combine_plot_fields
896
897
898

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