1 | #!/usr/bin/ksh |
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2 | |
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3 | # kpp4palm - script for creating gasphase module |
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4 | |
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5 | #------------------------------------------------------------------------------# |
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6 | # This file is part of the PALM model system. |
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7 | # |
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8 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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9 | # of the GNU General Public License as published by the Free Software Foundation, |
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10 | # either version 3 of the License, or (at your option) any later version. |
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11 | # |
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12 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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13 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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14 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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15 | # |
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16 | # You should have received a copy of the GNU General Public License along with |
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17 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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18 | # |
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19 | # Copyright 2017-2018 Klaus Ketelsen and MPI-CH (April 2007) |
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20 | # Copyright 2017-2018 Karlsruhe Institute of Technology |
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21 | # Copyright 2017-2018 Leibniz Universitaet Hannover |
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22 | #------------------------------------------------------------------------------# |
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23 | # |
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24 | # Current revisions: |
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25 | # ------------------ |
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26 | # |
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27 | # |
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28 | # Former revisions: |
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29 | # ----------------- |
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30 | # $Id: kpp4palm.ksh 2718 2018-01-02 08:49:38Z kanani $ |
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31 | # Initial revision |
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32 | # |
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33 | # |
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34 | # |
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35 | # |
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36 | # Other notes: |
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37 | # ------------# |
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38 | # Re-introduced relative path for KPP_HOME |
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39 | # Subroutine list adapted to lowercase subroutine names |
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40 | # Added arr2, removed update_sun and k_3rd from subroutine list |
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41 | # Renamed output file to chem_gasphase_mod |
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42 | # Renamed this fikle from kp4/ksh to kpp4kpp.ksh |
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43 | # changed location of def_mechanism directories to GASPHASE_PREPROC/mechanisms |
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44 | # |
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45 | # Nov. 2016: Initial Version of KPP chemistry convertor by Klaus Ketelsen |
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46 | # |
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47 | # |
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48 | |
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49 | set -eu |
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50 | |
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51 | |
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52 | ########################### User SetUp #################################### |
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53 | |
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54 | export KPP_HOME=`pwd`/kpp |
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55 | export KPP=$KPP_HOME/bin/kpp |
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56 | |
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57 | BASE=`pwd`/kpp4palm |
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58 | |
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59 | ########################## End User Setup ################################ |
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60 | |
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61 | WORK=tmp_kpp4palm |
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62 | |
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63 | # Default |
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64 | |
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65 | OUTDIR=`pwd`/../../../SOURCE |
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66 | OUTFILE=chem_gasphase_mod |
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67 | DEFDIR=`pwd`/mechanisms/def_smog |
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68 | PREFIX=chem_gasphase_mod |
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69 | MODE="scalar" |
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70 | VLEN=1 |
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71 | KEEP="NO" |
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72 | DE_INDEX="NO" |
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73 | DE_INDEX_FAST="NO" |
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74 | |
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75 | export KPP_SOLVER=Rosenbrock |
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76 | |
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77 | # get Command line option |
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78 | |
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79 | echo xxxxxxxxxx |
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80 | while getopts :d:ifkp:o:s:v:w: c # get options |
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81 | do case $c in |
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82 | d) DEFDIR=$OPTARG;; # directory of definition files |
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83 | |
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84 | i) DE_INDEX="YES";; # if set, deindexing |
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85 | |
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86 | f) DE_INDEX_FAST="YES";; # if set, fast deindexing |
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87 | |
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88 | k) KEEP="YES";; # keep Working directory |
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89 | |
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90 | o) OUTDIR=$OPTARG;; # Output directory of Generated Code |
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91 | |
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92 | p) PREFIX=$OPTARG;; # Name Prefix |
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93 | |
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94 | s) KPP_SOLVER=$OPTARG;; # Name Prefix |
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95 | |
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96 | v) MODE="vector" |
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97 | VLEN=$OPTARG;; # Set to vector Mode |
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98 | |
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99 | w) WORK=$OPTARG;; # Working directory |
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100 | |
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101 | \?) print ${0##*/} "unknown option:" $OPTARG |
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102 | print "USAGE: ${0##*/} [ -d dir -e -k -o dir -p name -s solver -v length -w dir ] " |
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103 | exit 1;; |
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104 | esac |
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105 | done |
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106 | shift OPTIND-1 |
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107 | |
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108 | echo $DEFDIR |
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109 | |
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110 | DEF_PREFIX=${PREFIX}.kpp |
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111 | |
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112 | # Create or clean working directory |
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113 | |
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114 | MY_PWD=`pwd` |
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115 | mkdir -p $WORK |
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116 | rm -rf $WORK/* |
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117 | cd $WORK |
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118 | |
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119 | # kpp dependend, may be changed |
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120 | |
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121 | KPP_FILE_LIST="Initialize Integrator LinearAlgebra Jacobian Function Rates Util" |
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122 | |
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123 | |
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124 | KPP_SUBROUTINE_LIST="initialize" |
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125 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST integrate fun" |
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126 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST kppsolve kppdecomp wlamch wlamch_add" |
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127 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST jac_sp k_arr " |
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128 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST update_rconst arr2" |
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129 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST initialize_kpp_ctrl error_output" |
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130 | |
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131 | # if [[ $MODE = "vector" && $KPP_SOLVER = "ROS2" ]] |
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132 | # then |
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133 | # cp $BASE/templates/${KPP_SOLVER}_vec.f90 ${KPP_SOLVER}.f90 # get vector Solver |
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134 | # else |
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135 | # # KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST FunTemplate JacTemplate Update_SUN " |
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136 | # KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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137 | # if [[ $MODE = "vector" ]] |
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138 | # then |
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139 | # cp $BASE/templates/${KPP_SOLVER}_vec.f90 ${KPP_SOLVER}.f90 # get vector Solver |
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140 | # else |
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141 | # KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST Rosenbrock FunTemplate JacTemplate Update_SUN" |
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142 | # fi |
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143 | # fi |
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144 | if [[ $MODE = "vector" ]] |
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145 | then |
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146 | # get vector Solver |
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147 | cp $BASE/templates/${KPP_SOLVER}_vec.f90 ${KPP_SOLVER}.f90 |
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148 | fi |
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149 | |
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150 | # Interface ignore list |
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151 | KPP_INTERFACE_IGNORE="waxpy wcopy" |
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152 | |
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153 | case $KPP_SOLVER in |
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154 | ROS2) ;; |
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155 | |
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156 | Rosenbrock) |
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157 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST wcopy wscal waxpy" |
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158 | if [[ $MODE != "vector" ]] |
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159 | then |
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160 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST rosenbrock funtemplate jactemplate" |
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161 | fi;; |
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162 | |
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163 | rosenbrock_mz) |
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164 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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165 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST Rosenbrock FunTemplate JacTemplate Update_SUN";; |
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166 | |
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167 | rosenbrock) |
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168 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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169 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST rosenbrock funtemplate jactemplate";; |
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170 | |
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171 | kpp_lsode) |
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172 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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173 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST KppLsode DLSODE JAC_CHEM FUN_CHEM" |
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174 | KPP_INTERFACE_IGNORE="$KPP_INTERFACE_IGNORE JAC_CHEM KppDecomp KppSolve";; |
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175 | |
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176 | kpp_radau5) |
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177 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY FUN_CHEM JAC_CHEM SET2ZERO" |
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178 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST RADAU5 Update_SUN" |
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179 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST KppSolveCmplx KppDecompCmplx";; |
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180 | |
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181 | kpp_sdirk) |
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182 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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183 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST SDIRK JAC_CHEM SET2ZERO FUN_CHEM" |
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184 | KPP_INTERFACE_IGNORE="$KPP_INTERFACE_IGNORE Set2zero SET2ZERO FUN_CHEM";; |
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185 | |
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186 | kpp_seulex) |
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187 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST WCOPY WSCAL WAXPY" |
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188 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST ATMSEULEX" |
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189 | KPP_SUBROUTINE_LIST="$KPP_SUBROUTINE_LIST SEULEX_ErrorMsg SEULEX_Integrator FUN_CHEM JAC_CHEM SEUL" |
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190 | KPP_INTERFACE_IGNORE="$KPP_INTERFACE_IGNORE SEULEX_Integrator SDIRK FUN_CHEM SEUL";; |
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191 | |
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192 | \?) print "SORRY ONLY ROSENBROCK METHODS WORK AT THE MOMENT:" $KPP_SOLVER |
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193 | exit 1;; |
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194 | esac |
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195 | #mz-ak-20070509+ |
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196 | |
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197 | KPP_INCLUDE_LIST="Parameters Global JacobianSP Monitor" |
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198 | |
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199 | #Get definition Files |
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200 | |
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201 | cp $DEFDIR/*.eqn . |
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202 | cp $DEFDIR/*.spc . |
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203 | cp $DEFDIR/${PREFIX}.kpp . |
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204 | |
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205 | # Run kpp |
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206 | |
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207 | $KPP $DEF_PREFIX |
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208 | |
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209 | # Get templates for C++ program |
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210 | |
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211 | cp $BASE/templates/module_header* . # Use fixed Module_header |
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212 | cp $BASE/templates/initialize_kpp_ctrl_template.f90 . # CTRL kpp time stepping |
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213 | |
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214 | # file with subroutine list for c++ program create_kpp_module |
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215 | |
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216 | for i in $KPP_FILE_LIST |
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217 | do |
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218 | echo ${PREFIX}_${i} >> file_list |
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219 | done |
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220 | echo initialize_kpp_ctrl_template >> file_list |
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221 | |
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222 | # file with subroutine list for c++ program create_kpp_module |
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223 | |
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224 | for i in $KPP_SUBROUTINE_LIST |
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225 | do |
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226 | echo $i >> subroutine_list |
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227 | done |
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228 | |
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229 | # file with include list for c++ program create_kpp_module |
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230 | |
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231 | for i in $KPP_INCLUDE_LIST |
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232 | do |
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233 | echo ${PREFIX}_${i} >> include_list |
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234 | done |
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235 | |
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236 | touch interface_ignore_list |
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237 | for i in $KPP_INTERFACE_IGNORE |
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238 | do |
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239 | echo $i >> interface_ignore_list |
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240 | done |
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241 | |
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242 | $BASE/bin/kpp4palm.exe $PREFIX $MODE $VLEN $DE_INDEX $DE_INDEX_FAST |
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243 | |
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244 | |
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245 | if [[ -e $OUTDIR/${OUTFILE}.f90 ]] |
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246 | then |
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247 | mv $OUTDIR/${OUTFILE}.f90 $OUTDIR/${OUTFILE}.f90.sav |
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248 | fi |
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249 | cp -p kk_kpp.f90 $OUTDIR/${OUTFILE}.f90 |
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250 | #cp -p kk_kpp.f90 $MY_PWD/../SOURCE/${OUTFILE}.f90 |
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251 | |
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252 | echo " " |
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253 | echo "Write kpp module -- > " $OUTDIR/${OUTFILE}.f90 |
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254 | |
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255 | if [[ $KEEP = "NO" ]] |
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256 | then |
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257 | cd $MY_PWD |
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258 | rm -rf $WORK |
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259 | fi |
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260 | exit |
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261 | |
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