1 | /****************************************************************************** |
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2 | |
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3 | KPP - The Kinetic PreProcessor |
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4 | Builds simulation code for chemical kinetic systems |
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5 | |
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6 | Copyright (C) 1995-1996 Valeriu Damian and Adrian Sandu |
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7 | Copyright (C) 1997-2005 Adrian Sandu |
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8 | |
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9 | KPP is free software; you can redistribute it and/or modify it under the |
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10 | terms of the GNU General Public License as published by the Free Software |
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11 | Foundation (http://www.gnu.org/copyleft/gpl.html); either version 2 of the |
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12 | License, or (at your option) any later version. |
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13 | |
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14 | KPP is distributed in the hope that it will be useful, but WITHOUT ANY |
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15 | WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
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16 | FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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17 | details. |
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18 | |
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19 | You should have received a copy of the GNU General Public License along |
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20 | with this program; if not, consult http://www.gnu.org/copyleft/gpl.html or |
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21 | write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, |
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22 | Boston, MA 02111-1307, USA. |
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23 | |
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24 | Adrian Sandu |
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25 | Computer Science Department |
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26 | Virginia Polytechnic Institute and State University |
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27 | Blacksburg, VA 24060 |
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28 | E-mail: sandu@cs.vt.edu |
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29 | |
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30 | ******************************************************************************/ |
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31 | |
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32 | /****************************************************************************** |
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33 | bug fixes for upgrading from yacc to bison implemented by Rolf Sander, |
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34 | following suggestions from Jason Lander <jason@env.leeds.ac.uk> |
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35 | ******************************************************************************/ |
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36 | |
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37 | %{ |
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38 | #include <stdio.h> |
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39 | #include <stdlib.h> |
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40 | #include <malloc.h> |
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41 | #include <string.h> |
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42 | #include <unistd.h> |
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43 | #include "scan.h" |
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44 | |
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45 | #define __YYSCLASS |
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46 | |
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47 | #define YYDEBUG 1 |
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48 | extern char yytext[]; |
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49 | extern FILE * yyin; |
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50 | |
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51 | int nError = 0; |
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52 | int nWarning = 0; |
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53 | |
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54 | int crt_section; |
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55 | int eqState; |
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56 | int isPhoto = 0; |
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57 | |
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58 | char crt_term[ 30 ]; |
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59 | char crt_coef[ 30 ]; |
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60 | |
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61 | char * InlineBuf; |
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62 | int InlineLen; |
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63 | |
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64 | void SemicolonError(); |
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65 | int yyerrflag=0; |
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66 | |
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67 | void ParserErrorMessage(); |
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68 | void yyerror(char *); |
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69 | |
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70 | %} |
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71 | |
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72 | %union{ |
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73 | char str[80]; |
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74 | }; |
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75 | |
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76 | %token JACOBIAN DOUBLE FUNCTION DEFVAR DEFRAD DEFFIX SETVAR SETRAD SETFIX |
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77 | %token HESSIAN STOICMAT STOCHASTIC DECLARE |
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78 | %token INITVALUES EQUATIONS LUMP INIEQUAL EQNEQUAL EQNCOLON |
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79 | %token LMPCOLON LMPPLUS SPCPLUS SPCEQUAL ATOMDECL CHECK CHECKALL REORDER |
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80 | %token MEX DUMMYINDEX EQNTAGS |
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81 | %token LOOKAT LOOKATALL TRANSPORT TRANSPORTALL MONITOR USES SPARSEDATA |
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82 | %token WRITE_ATM WRITE_SPC WRITE_MAT WRITE_OPT INITIALIZE XGRID YGRID ZGRID |
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83 | %token USE LANGUAGE INTFILE DRIVER RUN INLINE ENDINLINE |
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84 | %token PARAMETER SPCSPC INISPC INIVALUE EQNSPC EQNSIGN EQNCOEF |
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85 | %type <str> PARAMETER SPCSPC INISPC INIVALUE EQNSPC EQNSIGN EQNCOEF |
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86 | %token RATE LMPSPC SPCNR ATOMID LKTID MNIID INLCTX INCODE SSPID |
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87 | %type <str> RATE LMPSPC SPCNR ATOMID LKTID MNIID INLCTX INCODE SSPID |
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88 | %token EQNLESS EQNTAG EQNGREATER |
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89 | %type <str> EQNLESS EQNTAG EQNGREATER |
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90 | %token TPTID USEID |
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91 | %type <str> TPTID USEID |
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92 | %type <str> rate eqntag |
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93 | |
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94 | %% |
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95 | |
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96 | program : section |
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97 | | section program |
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98 | ; |
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99 | section : JACOBIAN PARAMETER |
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100 | { CmdJacobian( $2 ); |
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101 | } |
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102 | | HESSIAN PARAMETER |
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103 | { CmdHessian( $2 ); |
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104 | } |
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105 | | DECLARE PARAMETER |
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106 | { CmdDeclareValues( $2 ); |
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107 | } |
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108 | | STOICMAT PARAMETER |
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109 | { CmdStoicmat( $2 ); |
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110 | } |
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111 | | DOUBLE PARAMETER |
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112 | { CmdDouble( $2 ); |
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113 | } |
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114 | | REORDER PARAMETER |
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115 | { CmdReorder( $2 ); |
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116 | } |
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117 | | MEX PARAMETER |
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118 | { CmdMex( $2 ); |
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119 | } |
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120 | | DUMMYINDEX PARAMETER |
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121 | { CmdDummyindex( $2 ); |
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122 | } |
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123 | | EQNTAGS PARAMETER |
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124 | { CmdEqntags( $2 ); |
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125 | } |
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126 | | FUNCTION PARAMETER |
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127 | { CmdFunction( $2 ); |
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128 | } |
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129 | | STOCHASTIC PARAMETER |
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130 | { CmdStochastic( $2 ); |
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131 | } |
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132 | | ATOMDECL atomlist |
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133 | {} |
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134 | | CHECK atomlist |
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135 | {} |
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136 | | DEFVAR species |
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137 | {} |
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138 | | DEFRAD species |
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139 | {} |
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140 | | DEFFIX species |
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141 | {} |
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142 | | SETVAR setspclist |
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143 | {} |
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144 | | SETRAD setspclist |
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145 | {} |
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146 | | SETFIX setspclist |
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147 | {} |
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148 | | INITVALUES initvalues |
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149 | {} |
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150 | | EQUATIONS equations |
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151 | {} |
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152 | | LUMP lumps |
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153 | {} |
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154 | | LOOKAT lookatlist |
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155 | {} |
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156 | | MONITOR monitorlist |
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157 | {} |
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158 | | TRANSPORT translist |
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159 | {} |
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160 | | CHECKALL |
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161 | { CheckAll(); } |
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162 | | LOOKATALL |
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163 | { LookAtAll(); } |
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164 | | TRANSPORTALL |
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165 | { TransportAll(); } |
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166 | | WRITE_ATM |
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167 | { WriteAtoms(); } |
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168 | | WRITE_SPC |
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169 | { WriteSpecies(); } |
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170 | | WRITE_MAT |
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171 | { WriteMatrices(); } |
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172 | | WRITE_OPT |
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173 | { WriteOptions(); } |
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174 | | USE PARAMETER |
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175 | { CmdUse( $2 ); } |
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176 | | LANGUAGE PARAMETER |
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177 | { CmdLanguage( $2 ); } |
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178 | | INITIALIZE PARAMETER |
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179 | { DefineInitializeNbr( $2 ); } |
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180 | | XGRID PARAMETER |
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181 | { DefineXGrid( $2 ); } |
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182 | | YGRID PARAMETER |
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183 | { DefineYGrid( $2 ); } |
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184 | | ZGRID PARAMETER |
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185 | { DefineZGrid( $2 ); } |
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186 | | INLINE INLCTX inlinecode ENDINLINE |
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187 | { |
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188 | AddInlineCode( $2, InlineBuf ); |
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189 | free( InlineBuf ); |
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190 | } |
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191 | | INLINE error |
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192 | { ParserErrorMessage(); } |
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193 | | INTFILE PARAMETER |
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194 | { CmdIntegrator( $2 ); } |
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195 | | DRIVER PARAMETER |
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196 | { CmdDriver( $2 ); } |
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197 | | RUN PARAMETER |
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198 | { CmdRun( $2 ); } |
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199 | | USES uselist |
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200 | {} |
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201 | | SPARSEDATA PARAMETER |
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202 | { SparseData( $2 ); |
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203 | } |
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204 | ; |
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205 | semicolon : semicolon ';' |
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206 | { ScanWarning("Unnecessary ';'"); |
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207 | } |
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208 | | ';' |
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209 | ; |
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210 | atomlist : atomlist atomdef semicolon |
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211 | | atomdef semicolon |
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212 | | error semicolon |
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213 | { ParserErrorMessage(); } |
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214 | ; |
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215 | atomdef : ATOMID |
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216 | { switch( crt_section ) { |
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217 | case ATOMDECL: DeclareAtom( $1 ); break; |
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218 | case CHECK: SetAtomType( $1, DO_CHECK ); break; |
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219 | } |
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220 | } |
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221 | ; |
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222 | lookatlist : lookatlist lookatspc semicolon |
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223 | | lookatspc semicolon |
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224 | | error semicolon |
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225 | { ParserErrorMessage(); } |
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226 | ; |
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227 | lookatspc : LKTID |
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228 | { AddLookAt( $1 ); |
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229 | } |
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230 | ; |
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231 | monitorlist : monitorlist monitorspc semicolon |
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232 | | monitorspc semicolon |
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233 | | error semicolon |
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234 | { ParserErrorMessage(); } |
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235 | ; |
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236 | monitorspc : MNIID |
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237 | { AddMonitor( $1 ); |
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238 | } |
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239 | ; |
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240 | translist : translist transspc semicolon |
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241 | | transspc semicolon |
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242 | | error semicolon |
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243 | { ParserErrorMessage(); } |
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244 | ; |
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245 | transspc : TPTID |
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246 | { AddTransport( $1 ); |
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247 | } |
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248 | ; |
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249 | uselist : uselist usefile semicolon |
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250 | | usefile semicolon |
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251 | | error semicolon |
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252 | { ParserErrorMessage(); } |
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253 | ; |
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254 | usefile : USEID |
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255 | { AddUseFile( $1 ); |
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256 | } |
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257 | ; |
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258 | setspclist : setspclist setspcspc semicolon |
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259 | | setspcspc semicolon |
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260 | | error semicolon |
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261 | { ParserErrorMessage(); } |
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262 | ; |
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263 | setspcspc : SSPID |
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264 | { switch( crt_section ) { |
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265 | case SETVAR: SetSpcType( VAR_SPC, $1 ); break; |
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266 | case SETRAD: SetSpcType( RAD_SPC, $1 ); break; |
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267 | case SETFIX: SetSpcType( FIX_SPC, $1 ); break; |
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268 | } |
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269 | } |
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270 | ; |
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271 | species : species spc semicolon |
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272 | | spc semicolon |
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273 | | error semicolon |
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274 | { ParserErrorMessage(); } |
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275 | ; |
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276 | spc : spcname |
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277 | | spcdef |
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278 | ; |
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279 | spcname : SPCSPC SPCEQUAL atoms |
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280 | { switch( crt_section ) { |
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281 | case DEFVAR: DeclareSpecies( VAR_SPC, $1 ); break; |
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282 | case DEFRAD: DeclareSpecies( RAD_SPC, $1 ); break; |
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283 | case DEFFIX: DeclareSpecies( FIX_SPC, $1 ); break; |
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284 | } |
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285 | } |
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286 | ; |
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287 | spcdef : SPCSPC |
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288 | { switch( crt_section ) { |
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289 | case DEFVAR: DeclareSpecies( VAR_SPC, $1 ); break; |
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290 | case DEFRAD: DeclareSpecies( RAD_SPC, $1 ); break; |
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291 | case DEFFIX: DeclareSpecies( FIX_SPC, $1 ); break; |
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292 | } |
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293 | } |
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294 | ; |
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295 | atoms : atoms SPCPLUS atom |
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296 | | atom |
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297 | ; |
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298 | atom : SPCNR SPCSPC |
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299 | { AddAtom( $2, $1 ); |
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300 | } |
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301 | | SPCSPC |
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302 | { AddAtom( $1, "1" ); |
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303 | } |
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304 | ; |
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305 | initvalues : initvalues assignment semicolon |
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306 | | assignment semicolon |
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307 | | error semicolon |
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308 | { ParserErrorMessage(); } |
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309 | ; |
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310 | assignment : INISPC INIEQUAL INIVALUE |
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311 | { AssignInitialValue( $1, $3 ); } |
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312 | ; |
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313 | equations : equations equation semicolon |
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314 | | equation semicolon |
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315 | | error semicolon |
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316 | { ParserErrorMessage(); |
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317 | eqState = LHS; |
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318 | } |
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319 | ; |
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320 | equation : eqntag lefths righths rate |
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321 | { eqState = LHS; |
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322 | StoreEquationRate( $4, $1 ); |
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323 | CheckEquation(); |
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324 | } |
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325 | | lefths righths rate |
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326 | { eqState = LHS; |
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327 | StoreEquationRate( $3, " " ); |
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328 | CheckEquation(); |
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329 | } |
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330 | rate : RATE rate |
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331 | { strcpy( $$, $1 ); |
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332 | strcat( $$, $2 ); |
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333 | } |
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334 | | RATE |
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335 | { strcpy( $$, $1 ); |
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336 | } |
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337 | ; |
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338 | eqntag : EQNLESS EQNTAG EQNGREATER |
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339 | { strcpy( $$, $2 ); |
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340 | } |
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341 | ; |
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342 | lefths : expresion EQNEQUAL |
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343 | { eqState = RHS; } |
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344 | ; |
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345 | righths : expresion EQNCOLON |
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346 | { eqState = RAT; } |
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347 | ; |
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348 | expresion : expresion EQNSIGN term |
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349 | { ProcessTerm( eqState, $2, crt_coef, crt_term ); |
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350 | } |
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351 | | EQNSIGN term |
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352 | { ProcessTerm( eqState, $1, crt_coef, crt_term ); |
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353 | } |
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354 | | term |
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355 | { ProcessTerm( eqState, "+", crt_coef, crt_term ); |
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356 | } |
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357 | ; |
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358 | term : EQNCOEF EQNSPC |
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359 | { strcpy( crt_term, $2 ); |
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360 | strcpy( crt_coef, $1 ); |
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361 | } |
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362 | | EQNSPC |
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363 | { strcpy( crt_term, $1 ); |
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364 | strcpy( crt_coef, "1" ); |
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365 | } |
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366 | ; |
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367 | lumps : lumps lump semicolon |
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368 | | lump semicolon |
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369 | | error semicolon |
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370 | { ParserErrorMessage(); } |
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371 | ; |
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372 | lump : LMPSPC LMPPLUS lump |
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373 | { AddLumpSpecies( $1 ); |
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374 | } |
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375 | | LMPSPC LMPCOLON LMPSPC |
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376 | { |
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377 | AddLumpSpecies( $1 ); |
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378 | CheckLump( $3 ); |
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379 | } |
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380 | inlinecode : inlinecode INCODE |
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381 | { |
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382 | InlineBuf = AppendString( InlineBuf, $2, &InlineLen, MAX_INLINE ); |
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383 | } |
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384 | | INCODE |
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385 | { |
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386 | InlineBuf = malloc( MAX_INLINE ); |
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387 | InlineLen = MAX_INLINE; |
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388 | strcpy( InlineBuf, $1); |
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389 | } |
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390 | ; |
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391 | %% |
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392 | |
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393 | void yyerror( char * str ) |
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394 | { |
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395 | } |
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396 | |
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397 | void ParserErrorMessage() |
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398 | { |
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399 | /* yyerrok; */ |
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400 | /* |
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401 | Message("[%d,%s] -> [%d,%s]", crtTokType, crtToken, nextTokType, nextToken ); |
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402 | */ |
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403 | if( crtToken[0] == ';' ) { |
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404 | ParserError("Misplaced ';'"); |
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405 | return; |
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406 | } |
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407 | switch( crtTokType ) { |
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408 | case ATOMID: |
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409 | ParserError("Missing ';' after '%s'", crtToken ); |
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410 | break; |
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411 | |
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412 | case SPCSPC: |
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413 | ParserError("Missing ';' or '+' after '%s'", crtToken ); |
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414 | break; |
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415 | case SPCNR: |
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416 | ParserError("Missing species after '%s'", crtToken ); |
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417 | break; |
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418 | case SPCPLUS: |
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419 | ParserError("Missing atom after '%s'", crtToken ); |
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420 | break; |
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421 | case SPCEQUAL: |
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422 | ParserError("Invalid '=' after '%s'", crtToken ); |
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423 | break; |
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424 | |
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425 | case INISPC: |
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426 | ParserError("Missing '=' after '%s'", crtToken ); |
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427 | break; |
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428 | case INIEQUAL: |
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429 | ParserError("Missing value after '%s'", crtToken ); |
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430 | break; |
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431 | case INIVALUE: |
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432 | ParserError("Missing ';' after '%s'", crtToken ); |
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433 | break; |
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434 | |
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435 | case EQNSPC: |
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436 | ParserError("Missing '+' or '=' after '%s'", crtToken ); |
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437 | break; |
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438 | case EQNEQUAL: |
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439 | ParserError("Invalid right hand side of equation"); |
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440 | break; |
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441 | case EQNCOLON: |
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442 | ParserError("Missing rate after '%s'", crtToken ); |
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443 | break; |
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444 | case EQNSIGN: |
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445 | ParserError("Missing coeficient after '%s'", crtToken ); |
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446 | break; |
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447 | case EQNCOEF: |
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448 | ParserError("Missing species after '%s'", crtToken ); |
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449 | break; |
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450 | case RATE: |
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451 | ParserError("Missing ';' after '%s'", crtToken ); |
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452 | break; |
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453 | |
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454 | case LMPSPC: |
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455 | ParserError("Missing '+' or ':' or ';' after '%s'", crtToken ); |
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456 | break; |
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457 | case LMPPLUS: |
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458 | ParserError("Missing species after '%s'", crtToken ); |
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459 | break; |
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460 | case LMPCOLON: |
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461 | ParserError("Missing species after '%s'", crtToken ); |
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462 | break; |
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463 | case INLINE: |
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464 | ParserError("Missing inline option after '%s'", crtToken ); |
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465 | break; |
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466 | |
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467 | default: |
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468 | ParserError("Syntax error after '%s'", crtToken ); |
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469 | } |
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470 | } |
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471 | |
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472 | |
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473 | int Parser( char * filename ) |
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474 | { |
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475 | extern int yydebug; |
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476 | FILE *f; |
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477 | |
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478 | crt_filename = filename; |
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479 | |
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480 | f = fopen( crt_filename, "r" ); |
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481 | if( f == 0 ) { |
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482 | FatalError(7,"%s: File not found", crt_filename); |
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483 | } |
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484 | |
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485 | yyin = f; |
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486 | nError = 0; |
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487 | nWarning = 0; |
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488 | yydebug = 0; |
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489 | |
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490 | yyparse(); |
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491 | |
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492 | fclose( f ); |
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493 | |
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494 | return nError; |
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495 | } |
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496 | |
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