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user_defined_code.tex @ 1832

Last change on this file since 1832 was 1649, checked in by knoop, 9 years ago
Latex lecture update for PALM seminar in Hong Kong
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1	% $Id: user_defined_code.tex 1649 2015-09-15 16:34:42Z hoffmann $
2	\input{header_tmp.tex}
3	%\input{../header_lectures.tex}
4
5	\usepackage[utf8]{inputenc}
6	\usepackage{ngerman}
7	\usepackage{pgf}
8	\usepackage{subfigure}
9	\usepackage{units}
10	\usepackage{multimedia}
11	\usepackage{hyperref}
12	\newcommand{\event}[1]{\newcommand{\eventname}{#1}}
13	\usepackage{xmpmulti}
14	\usepackage{tikz}
15	\usetikzlibrary{shapes,arrows,positioning}
16	%\usetikzlibrary{decorations.markings} %neues paket
17	%\usetikzlibrary{decorations.pathreplacing} %neues paket
18	\def\Tiny{\fontsize{4pt}{4pt}\selectfont}
19	\usepackage{amsmath}
20	\usepackage{amssymb}
21	\usepackage{multicol}
22	\usepackage{pdfcomment}
23	\usepackage{graphicx}
24	\usepackage{listings}
25	\lstset{showspaces=false,language=fortran,basicstyle=
26	\ttfamily,showstringspaces=false,captionpos=b}
27
28	\institute{Institute of Meteorology and Climatology, Leibniz UniversitÃ€t Hannover}
29	\selectlanguage{english}
30	\date{last update: \today}
31	\event{PALM Seminar}
32	\setbeamertemplate{navigation symbols}{}
33
34	\setbeamertemplate{footline}
35	{
36	\begin{beamercolorbox}[rightskip=-0.1cm]&
37	{\includegraphics[height=0.65cm]{imuk_logo.pdf}\hfill \includegraphics[height=0.65cm]{luh_logo.pdf}}
38	\end{beamercolorbox}
39	\begin{beamercolorbox}[ht=2.5ex,dp=1.125ex,
40	leftskip=.3cm,rightskip=0.3cm plus1fil]{title in head/foot}
41	{\leavevmode{\usebeamerfont{author in head/foot}\insertshortauthor} \hfill \eventname \hfill \insertframenumber \; / \inserttotalframenumber}
42	\end{beamercolorbox}
43	\begin{beamercolorbox}[colsep=1.5pt]{lower separation line foot}
44	\end{beamercolorbox}
45	}
46	%\logo{\includegraphics[width=0.3\textwidth]{luhimuk_logo.pdf}}
47
48	\title[The PALM User-Interface]{The PALM User-Interface}
49	\author{PALM group}
50
51	\begin{document}
52
53	% Folie 1
54	\begin{frame}
55	\titlepage
56	\end{frame}
57
58	\section{The PALM User-Interface}
59	\subsection{The PALM User-Interface}
60
61	% Folie 2
62	\begin{frame}
63	\frametitle{Purpose of the User-Interface}
64	\scriptsize
65	\begin{itemize}
66	\item<2-> The standard (default) PALM code cannot account for every specific demand of a user. In order to include these specific demands, the user would have to modify the standard code.
67	\end{itemize}
68	\vspace{2mm}
69	\onslide<3->
70	\textbf{Problem:}
71	\begin{itemize}
72	\item<3-> New releases of PALM (current release is 3.10) would require the user to add his modifications to the new release again.
73	\end{itemize}
74	\vspace{3mm}
75	\onslide<4->
76	\textbf{Solution:}
77	\begin{itemize}
78	\item<4-> PALM offers a \grqq user-interface\grqq, i.e. a set of subroutines, where the user can add his modifications, and which can be re-used for future releases of the standard PALM code.
79	\item<5-> By using the user-interface, the standard code does not have to be modified by the user in most of the cases.
80	\item<6-> The user-interface subroutines are almost \grqq empty\grqq\, by default. They are called from the standard PALM code but (with some very minor exceptions) do not contain any executable code.
81	\end{itemize}
82	\end{frame}
83
84	% Folie 3
85	\begin{frame}
86	\frametitle{General Structure of the User-Interface}
87	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\Tiny]
88	\scriptsize
89	\begin{itemize}
90	\item<1-> All routines can be found under \texttt{.../trunk/SOURCE}.
91	\item<2-> There is one file for each routine. Filenames are \texttt{user\underline{ }*.f90}.\\
92	Example: \texttt{user\underline{ }last\underline{ }actions.f90}
93	\end{itemize}
94	\onslide<3->
95	\begin{center}
96	\begin{tikzpicture}[auto]
97	\node[yellow]{~\texttt{SUBROUTINE user\_last\_actions} \\
98	\par\medskip
99	\texttt{!------------------------------------------------------------------------------!}\\
100	\texttt{!}\\
101	\texttt{! Description:}\\
102	\texttt{! ------------}\\
103	\texttt{! Execution of user-defined actions at the end of a job.}\\
104	\texttt{!------------------------------------------------------------------------------!}\\
105	\par\medskip
106	~~~~\texttt{USE control\_parameters}\\
107	~~~~\texttt{USE kinds}\\
108	~~~~\texttt{USE user}\\
109	\par\medskip
110	~~~~\texttt{IMPLICIT NONE}\\
111	\par\medskip
112	\texttt{!}\\
113	\texttt{!-- Here the user-defined actions at the end of a job follow.}\\
114	\texttt{!-- Sample for user-defined output:}\\
115	\vspace{0.5mm}
116	~~~~\texttt{IF ( write\_binary(1:4) == 'true' ) THEN}\\
117	\vspace{0.5mm}
118	\texttt{!~~~~~~~IF ( ALLOCATED( u2\_av ) ) THEN}\\
119	\vspace{0.5mm}
120	\texttt{!~~~~~~~~~~WRITE ( 14 ) 'u2\_av~~~~~~~~~~~~~~~'; WRITE ( 14 ) u2\_av}\\
121	\vspace{0.5mm}
122	\texttt{!~~~~~~~ENDIF}\\
123	\par\medskip
124	~~~~~~~\texttt{WRITE ( 14 ) '* end user *~~~~'}\\
125	\par\medskip
126	~~~~\texttt{ENDIF}\\
127	\par\medskip
128	~\texttt{END SUBROUTINE user\_last\_actions}};
129	\end{tikzpicture}
130	\end{center}
131	% \includegraphics[scale=0.3]{user_defined_code_figures/user_last_actions.png}\\
132	\end{frame}
133
134	% Folie 4
135	\begin{frame}
136	\frametitle{Embedding of User-Interface Routines}
137	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\Tiny]
138	\scriptsize
139	\begin{itemize}
140	\item<1-> The user-interface routines are called from specific, well-defined locations in the standard PALM code.\\
141	\ \\
142	Example from \texttt{palm.f90}:
143	\end{itemize}
144	\onslide<2->
145	\begin{center}
146	\begin{tikzpicture}[auto]
147	\node[yellow]{~\texttt{...}\\
148	\vspace{0.5mm}
149	\texttt{!}\\
150	\texttt{!-- If required, final user-defined actions, and}\\
151	\texttt{!-- last actions on the open files and close files. Unit 14 was opened}\\
152	\texttt{!-- in write\_3d\_binary but it is closed here, to allow writing on this}\\
153	\texttt{!-- unit in routine user\_last\_actions.}\\
154	\vspace{0.5mm}
155	~~~~\texttt{CALL cpu\_log( log\_point(4), 'last actions', 'start' )}\\
156	~~~~\texttt{DO i = 0, io\_blocks-1}\\
157	~~~~~~~\texttt{IF ( i == io\_group ) THEN}\\
158	~~~~~~~~~~\texttt{\textcolor{blue}{CALL user\_last\_actions}}\\
159	\vspace{0.5mm}
160	~~~~~~~~~~\texttt{IF ( write\_binary(1:4) == 'true' ) CALL close\_file( 14 )}\\
161	~~~~~~~\texttt{ENDIF}\\
162	\vspace{0.5mm}
163	\texttt{\#if defined( \_\_parallel )}\\
164	~~~~~~~\texttt{CALL MPI\_BARRIER( comm2d, ierr )}\\
165	\vspace{0.5mm}
166	\texttt{\#endif}\\
167	\vspace{0.5mm}
168	~~~~\texttt{ENDDO}\\
169	\vspace{0.5mm}
170	~~~~\texttt{CALL close\_file( 0 )}\\
171	\vspace{0.5mm}
172	~~~~\texttt{CALL close\_dvrp}\\
173	~~~~\texttt{CALL cpu\_log( log\_point(4), 'last actions', 'stop' )}\\
174	\vspace{1mm}
175	~\texttt{...}\\
176	\vspace{1mm}
177	\texttt{!}\\
178	\texttt{!-- Take final CPU-time for CPU-time analysis}\\
179	~~~~\texttt{CALL cpu\_log( log\_point(1), 'total', 'stop' )}\\
180	~~~~\texttt{CALL cpu\_statistics}\\
181	\texttt{\#if defined( \_\_parallel )}\\
182	~~~~\texttt{CALL MPI\_FINALIZE( ierr )}\\
183	\vspace{0.5mm}
184	\texttt{\#endif}\\
185	\par\medskip
186	~\texttt{END PROGRAM palm}};
187	\end{tikzpicture}
188	\end{center}
189
190	% \includegraphics[scale=0.33]{user_defined_code_figures/embedding.png}\\
191	\end{frame}
192
193
194	% Folie 5
195	\begin{frame}
196	\frametitle{Embedding of User-Interface Routines\\
197	Flow Chart Overview (I): Initial Steps}
198	\scriptsize
199	\begin{tikzpicture}[scale=0.8, transform shape]
200	% Define colours
201	\tikzstyle{green} = [draw, fill=green!30, text width=7.1em, text centered, minimum height=1.6em]
202	\tikzstyle{green1} = [draw, fill=green!30, text width=12em, text centered, minimum height=1.6em]
203	\tikzstyle{green2} = [draw, fill=green!30, text width=10em, text centered, minimum height=1.6em]
204	\tikzstyle{yellow} = [draw, fill=yellow!30, text width=7.1em, text centered, minimum height=1.6em]
205	\tikzstyle{orange} = [draw, fill=orange!60, text width=7.1em, text centered]
206
207	% Define coordinates and draw nodes
208	\node[yellow, text width=5em] (PALM) at (0,0.1) {PALM};
209
210	\coordinate (A) at (0,-0.7);
211	\node[yellow, right=0.6cm of A] (parin) {parin};
212
213	\node[green, right=1mm of parin] (userparin) {user\_parin};
214	\draw[-] (parin) -- (userparin);
215
216	\coordinate[below=0.6cm of A] (B);
217	\node[yellow, right=0.6cm of B] (initgrid) {init\_grid};
218
219	\node[green, right=1mm of initgrid] (userinigrid) {user\_init\_grid};
220	\draw[-] (initgrid) -- (userinigrid);
221
222	\coordinate[below=0.6cm of B] (C);
223	\node[yellow, right=0.6cm of C] (checkparam) {check\_parameters};
224
225	\coordinate[below=0.3cm of checkparam] (D);
226	\node[green1, right=0.6cm of D] (usercheckdataout) {user\_check\_data\_output/\_pr};
227
228	\coordinate[below=0.55cm of D] (E);
229	\node[green1, right=0.6cm of E] (usercheckparam) {user\_check\_parameters};
230
231	\coordinate[below=1.7cm of C] (F);
232	\node[yellow, right=0.6cm of F] (init3dmodel) {init\_3d\_model};
233
234	\coordinate[below=0.3cm of init3dmodel] (G);
235	\node[green2, right=0.6cm of G] (userinit3d) {user\_init\_3d\_model};
236
237	\coordinate[below=0.55cm of G] (H);
238	\node[yellow, right=0.6cm of H] (read3dbin) {read\_3d\_binary};
239
240	\coordinate[below=0.3cm of read3dbin] (I);
241	\node[green1, right=0.6cm of I] (userreadrestart) {user\_read\_restart\_data};
242
243	\coordinate[below=1.15cm of H] (J);
244	\node[green1, right=0.6cm of J] (userinitplan) {user\_init\_plant\_canopy};
245
246	\coordinate[below=0.6cm of J] (K);
247	\node[yellow, right=0.6cm of K] (lpminit) {lpm\_init};
248
249	\node[green, right=1mm of lpminit] (userlpminit) {user\_lpm\_init};
250	\draw[-] (lpminit) -- (userlpminit);
251
252	\coordinate[below=0.6cm of K] (L);
253	\node[green, right=0.6cm of L] (userinit) {user\_init};
254
255	\coordinate[below=4.05cm of F] (M);
256	\node[yellow, right=0.6cm of M] (header) {header};
257
258	\node[green, right=1mm of header] (userheader) {user\_header};
259	\draw[-] (header) -- (userheader);
260	%
261	% Draw lines
262	\draw[-, thick] (PALM) -- (0,-7.8);
263	\draw[dotted, thick] (0,-8.2) -- (0,-7.8);
264	\draw[-] (A) -- (parin);
265	\draw[-] (B) -- (initgrid);
266	\draw[-] (C) -- (checkparam);
267	\draw[-] (checkparam.south) \|- (usercheckdataout.west);
268	\draw[-] (checkparam.south) \|- (usercheckparam.west);
269	\draw[-] (F) -- (init3dmodel);
270	\draw[-,dashed] (init3dmodel.south) \|- (userinit3d.west);
271	\draw[-,dashed] (init3dmodel.south) \|- (read3dbin.west);
272	\draw[-] (read3dbin.south) \|- (userreadrestart.west);
273	\draw[-,dashed] (init3dmodel.south) \|- (userinitplan);
274	\draw[-,dashed] (init3dmodel.south) \|- (lpminit);
275	\draw[-] (init3dmodel.south) \|- (userinit);
276	\draw[-] (M) -- (header);
277
278	\end{tikzpicture}
279	\end{frame}
280
281	% Folie 6
282	\begin{frame}
283	\frametitle{Embedding of User-Interface Routines\\
284	Flow Chart Overview (II): Time Integration Loop}
285	\scriptsize
286	\begin{tikzpicture}[scale=0.7, transform shape]
287	% Define colours
288	\tikzstyle{green} = [draw, fill=green!30, text width=7.1em, text centered, minimum height=1.6em]
289	\tikzstyle{green1} = [draw, fill=green!30, text width=10em, text centered, minimum height=1.6em]
290	\tikzstyle{yellow} = [draw, fill=yellow!30, text width=7.1em, text centered, minimum height=1.6em]
291	\tikzstyle{orange} = [draw, fill=orange!60, text width=7.1em, text centered]
292	\tikzstyle{orange1} = [draw, fill=orange!80, text width=11em, text centered]
293	\definecolor{grey}{rgb}{0.25,0.25,0.25}
294
295	% Define coordinates and draw nodes
296	\node[draw, text width=25em,minimum height=4.0em,fill=black!15] (progframe) at (5.75,-1.5) {};
297
298	\coordinate (A) at (0,0);
299
300	\node[orange, right=0.6cm of A] (timeint) {time\_integration};
301
302	\coordinate[below=0.3cm of timeint] (B);
303	\coordinate[below=0.8cm of timeint] (C);
304	\coordinate[right=2cm of C] (D);
305	\coordinate[right=3.8cm of D] (E);
306
307	\node[green, right=0.6cm of B, text width=14em] (useractions1) {\textcolor{blue}{user\_actions\_(\textit{'before\_timestep'})}};
308
309	\node[orange1, below=0.2cm of D] (progeq) {prognostic\_equations\_vector};
310	\node[orange1, below=0.2cm of E] (progeqfast) {prognostic\_equations\_cache};
311
312	\node[green, right=0.3cm of progframe, text width=14em] (useractions2) {\textcolor{blue}{user\_actions\_(\textit{'*\_tendency'})}};
313
314
315	\coordinate[below=2.3cm of timeint] (F);
316	\coordinate[below=2.9cm of timeint] (G);
317	\coordinate[below=3.5cm of timeint] (H);
318	\coordinate[below=4.1cm of timeint] (I);
319
320
321	\node[yellow, right=0.6cm of F] (lpm) {lpm};
322	\node[green, right=0.9cm of lpm, text width=10em] (userlpmadvec) {user\_lpm\_advec};
323	\node[yellow, right=0.6cm of G] (exchangehoriz) {exchange\_horiz};
324	% \node[yellow, right=0.0cm of exchangehoriz] (asselin) {asselin\_filter};
325	\node[yellow, right=0.6cm of H] (swaptimelevel) {swap\_timelevel};
326	\node[yellow, right=0.6cm of I] (pres) {pres};
327
328	\coordinate[below=0.3cm of pres] (J);
329	\coordinate[below=5.1cm of timeint] (K);
330	\coordinate[below=5.7cm of timeint] (L);
331	\coordinate[below=6.3cm of timeint] (M);
332	\coordinate[below=6.9cm of timeint] (N);
333	\coordinate[below=8.2cm of timeint] (O);
334	\coordinate[below=8.8cm of timeint] (P);
335
336	% \node[yellow, right=0.6cm of K] (prandtlfluxes) {prandtl\_fluxes};
337	\node[green, right=0.6cm of K, text width=14em] (useractions3) {\textcolor{blue}{user\_actions\_(\textit{'after\_integration'})}};
338	% \node[yellow, right=0.6cm of L] (diffusivities) {diffusivities};
339	% \node[yellow, right=0.6cm of L] (checkrestart) {check\_for\_restart};
340	\node[yellow, right=0.6cm of L] (flowstat) {flow\_statistics};
341	\node[green, right=0.6cm of flowstat] (userstat2) {user\_statistics};
342
343	\node[yellow, right=0.6cm of M] (sum3ddata) {sum\_up\_3d\_data};
344	\node[green1, right=0.6cm of sum3ddata] (user3ddataav) {user\_3d\_data\_averaging};
345
346	\node[green, right=0.6cm of O, text width=14em] (useractions4) {\textcolor{blue}{user\_actions\_(\textit{'after\_timestep'})}};
347	% \node[yellow, right=0.6cm of P] (timestep) {timestep};
348
349	\node[yellow, right=0.2cm of user3ddataav] (dataoutput) {data\_output\_***};
350	\node[green, right=0.2cm of dataoutput] (userdvrpcoltab) {user\_dvrp\_coltab};
351	\coordinate[below=0.2cm of dataoutput] (Q);
352	\coordinate[right=0.4cm of Q] (R);
353	\coordinate[right=3.0cm of R] (S);
354
355	\node[green, below=0.2cm of R, text width=9em] (output2d) {user\_data\_output\_2d};
356	\node[green, below=0.2cm of S, text width=9em] (output3d) {user\_data\_output\_3d};
357
358
359
360	\draw[dotted, thick] (0,0.05) -- (0,0.3);
361	\draw[-, thick] (0,0.05) -- (0,-8.8);
362	\draw[dotted, thick] (0,-9.2) -- (0,-8.8);
363	\draw[-, thick] (A) -- (timeint);
364	\draw[-, thick] (timeint) -- (P);
365	\draw[-, thick] (B) -- (useractions1);
366	\draw[-, thick] (C) -- (D);
367	\draw[-, thick] (D) -- (E);
368	\draw[->, thick] (E) -- (progeqfast);
369	\draw[-, thick] (progeq) -- (D);
370	\draw[-, thick] (progframe) -- (useractions2);
371	\draw[-, thick] (F) -- (lpm);
372	\draw[-, thick] (userlpmadvec) -- (lpm);
373	\draw[-, thick] (G) -- (exchangehoriz);
374	\draw[-, thick] (H) -- (swaptimelevel);
375	\draw[-, thick] (I) -- (pres);
376	\draw[dotted, thick] (pres) -- (J);
377	% \draw[-, thick] (K) -- (prandtlfluxes);
378	\draw[-, thick] (K) -- (useractions3);
379	\draw[-, thick] (L) -- (flowstat);
380	\draw[-, thick] (M) -- (sum3ddata);
381	\draw[-, thick] (sum3ddata) -- (user3ddataav);
382
383	\draw[-, thick] (userstat2) -- (flowstat);
384	\draw[-, thick] (O) -- (useractions4);
385	% \draw[-, thick] (O) -- (timestep);
386	\draw[-, thick] (dataoutput) -- (Q);
387	\draw[-, thick] (S) -- (Q);
388	\draw[-, thick] (R) -- (output2d);
389	\draw[-, thick] (S) -- (output3d);
390	\end{tikzpicture}
391	\end{frame}
392
393
394	% Folie 7
395	\begin{frame}
396	\frametitle{Embedding of User-Interface Routines\\
397	Flow Chart Overview (III): Final Steps}
398	\scriptsize
399	\begin{tikzpicture}[scale=0.8, transform shape]
400	% Define colours
401	\tikzstyle{green} = [draw, fill=green!30, text width=7.1em, text centered, minimum height=1.6em]
402	\tikzstyle{yellow} = [draw, fill=yellow!30, text width=7.1em, text centered, minimum height=1.6em]
403	\tikzstyle{orange} = [draw, fill=orange!60, text width=7.1em, text centered]
404
405	% Define coordinates and draw nodes
406	\node[green, text width=5em] (PALM) at (0,0.1) {PALM};
407
408	\coordinate (A) at (0,-0.7);
409
410
411	\node[orange, right=0.6cm of A] (timeint) {time\_integration};
412	\coordinate[below=0.5cm of timeint] (B);
413	\coordinate[below=1.0cm of timeint] (C);
414
415	\coordinate[below=2.5cm of PALM] (D);
416
417	\node[yellow, right=0.6cm of D] (write3dbinary) {write\_3d\_binary};
418	\node[yellow, right=0.9cm of write3dbinary] (writevarlist) {write\_var\_list};
419
420	\coordinate[below=3.5cm of PALM] (E);
421	\coordinate[below=4.1cm of PALM] (F);
422	\coordinate[below=4.7cm of PALM] (G);
423	\node[yellow, right=0.6cm of E] (header) {header};
424	\node[green, right=0.6cm of F] (userlastactions) {user\_last\_actions};
425	\node[yellow, right=0.6cm of G] (cpustat) {cpu\_statistics};
426	% Draw lines
427	\draw[-, thick] (PALM) -- (G);
428	\draw[-, thick] (A) -- (timeint);
429	\draw[-, thick] (B) -- (timeint);
430	\draw[dotted, thick] (B) -- (C);
431	\draw[dashed, thick] (D) -- (write3dbinary);
432	\draw[-, thick] (write3dbinary) -- (writevarlist);
433	\draw[-, thick] (E) -- (header);
434	\draw[-, thick] (F) -- (userlastactions);
435	\draw[-, thick] (G) -- (cpustat);
436
437	\end{tikzpicture}
438	\end{frame}
439
440	% Folie 8
441	\begin{frame}
442	\frametitle{Complete List of User-Interface Routines (I)}
443	\tiny
444	\begin{tabular}{\|p{2.5cm}\|p{2.4cm}\|p{2.1cm}\|p{3cm}\|}
445	\hline
446	\textbf{Name} & \textbf{Arguments} & \textbf{Called from} & \textbf{Task}\\
447	\hline
448	\texttt{user\_3d\_data\_averaging} & \texttt{mode}, \texttt{variable} & \texttt{average\_3d\_data} + \texttt{sum\_up\_3d\_data} & temporal averaging for user-defined quantities\\
449	\hline
450	\texttt{user\_actions} \texttt{user\_actions} & \texttt{location} \,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\,\, \texttt{i}, \texttt{j}, \texttt{location} & \texttt{time\_integration} +
451	\texttt{prognostic\_equations} & e.g. additional forces to be included in the prognostic equations\\
452	\hline
453	\texttt{user\_dummy (user\_additional \_routines.f90)} & - - - & - - - & for additional subroutines defined by the user\\
454	\hline
455	\texttt{user\_check\_data\_output} & \texttt{variable}, \texttt{unit} & \texttt{check\_parameters} + \texttt{init\_masks}& check the user-defined output quantities\\
456	\hline
457	\texttt{user\_check\_data\_output\_pr} & \texttt{variable}, \texttt{var\_count}, \texttt{unit} & \texttt{check\_parameters} & check the user-defined profile output quantities\\
458	\hline
459	\texttt{user\_check\_parameters} & - - - & \texttt{check\_parameters} & check user-defined variables\\
460	\hline
461	\texttt{user\_data\_output\_2d} & \texttt{av}, \texttt{variable}, \texttt{found}, \texttt{grid}, \texttt{local\_pf}, \texttt{two\_d} & \texttt{data\_output\_2d} & output/calculation of additional user-defined quantities\\
462	\hline
463	\texttt{user\_data\_output\_3d} & \texttt{av}, \texttt{variable}, \texttt{found}, \texttt{local\_pf}, \texttt{nz\_do} & \texttt{data\_output\_3d} & output/calculation of additional user-defined quantities\\
464	\hline
465	\texttt{user\_data\_output\_dvrp} & \texttt{output\_variable}, \texttt{local\_pf} & \texttt{data\_output\_dvrp} & output of additional user-defined quantities\\
466	\hline
467	\texttt{user\_data\_output\_mask} & \texttt{av}, \texttt{variable}, \texttt{found}, \texttt{local\_pf} & \texttt{data\_output\_mask} & output of additional masked user-defined quantities\\
468	\hline
469	\texttt{user\_define\_netcdf\_grid} & \texttt{variable}, \texttt{found}, \texttt{grid\_x}, \texttt{grid\_y}, \texttt{grid\_z} & \texttt{netcdf} & defining the grid for additional output quantities\\
470	\hline
471	\texttt{user\_dvrp\_coltab} & \texttt{mode}, \texttt{variable} & \texttt{data\_output\_dvrp} & defining color tables for particles\\
472	\hline
473	\texttt{user\_header} & \texttt{io} & \texttt{header} & output user variables to header\\
474	\hline
475	\texttt{user\_init} & - - - & \texttt{init\_3d\_model} & e.g. reading from restart file\\
476	\hline
477	\end{tabular}
478
479	\end{frame}
480
481	% Folie 9
482	\begin{frame}
483	\frametitle{Complete List of User-Interface Routines (II)}
484	\tiny
485	\ \\
486	\begin{tabular}{\|p{2.5cm}\|p{2.4cm}\|p{2.1cm}\|p{3cm}\|}
487	\hline
488	\textbf{Name} & \textbf{Arguments} & \textbf{Called from} & \textbf{Task}\\
489	\hline
490	\texttt{user\_init\_3d\_model} & - - - & \texttt{init\_3d\_model} & special initializations\\
491	\hline
492	\texttt{user\_init\_grid} & \texttt{gls} & \texttt{init\_grid} & defining a special topography\\
493	\hline
494	\texttt{user\_init\_plant\_canopy} & - - - & \texttt{init\_3d\_model} & setting of leaf area density and canopy drag coefficient\\
495	\hline
496	\texttt{user\_last\_actions} & - - - & \texttt{palm} & e.g. output for restart runs\\
497	\hline
498	\texttt{user\_lpm\_advec} & - - - & \texttt{lpm} & modification of particles after advection \\
499	\hline
500	\texttt{user\_lpm\_init} & - - - & \texttt{lpm\_init} & defining initial particle sources \\
501	\hline
502	\texttt{user\_lpm\_set\_attributes} & - - - & \texttt{lpm} & defining particles attributes \\
503	\hline
504	\texttt{MODULE user (user\_module.f90)} & - - - & - - - & contains user defined variables\\
505	\hline
506	\texttt{user\_parin} & & \texttt{parin} & reading user variables\\
507	\hline
508	\texttt{user\_read\_restart\_data} & \texttt{i}, \texttt{nxlfa}, \texttt{nxl\_on\_file}, \texttt{nxrfa}, \texttt{nxr\_on\_file}, \texttt{nynfa}, \texttt{nyn\_on\_file}, \texttt{nysfa}, \texttt{nys\_on\_file}, \texttt{offset\_xa}, \texttt{offset\_ya}, \texttt{overlap\_count}, \texttt{tmp\_2d}, \texttt{tmp\_3d} & \texttt{read\_3d\_binary} & reading user-defined 2d/3d-arrays from the restart file\\
509	\hline
510	\texttt{user\_spectra} & \texttt{mode}, \texttt{m}, \texttt{pr} & \texttt{calc\_spectra} + \texttt{data\_output\_spectra} & output/calculation of additional user-defined quantities\\
511	\hline
512	\texttt{user\_statistics} & \texttt{mode}, \texttt{sr}, \texttt{tn} & \texttt{flow\_statistics} & calculating additional horizontal averages + time series quantities\\
513	\hline
514	\end{tabular}
515	\ \\
516	\ \\
517	See PALM online documentation under \\
518	\textbf{http://palm.muk.uni-hannover.de/trac/wiki/doc/app/userint}\\
519	for detailed explanations.
520
521	\end{frame}
522
523	% Folie 10
524	\begin{frame}
525	\frametitle{Data Access / Exchange}
526	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.6\textwidth, font=\tiny]
527	\footnotesize
528	\begin{itemize}
529	\item<2-> \textbf{Between the standard PALM code and the user-interface:}\\
530	\begin{itemize}
531	\scriptsize
532	\item<3-> by including the respective \textcolor{blue}{PALM modules} in the user-interface subroutines.\\
533	\begin{center}
534	% \includegraphics[scale=0.3]{user_defined_code_figures/data_access_exchange.png}
535	\begin{tikzpicture}[auto]
536	\node[yellow]{\texttt{SUBROUTINE user\_actions( location )} \\
537	\par\medskip
538	~~~~~\texttt{\textcolor{blue}{USE arrays\_3d}} \\
539	~~~~~\texttt{\textcolor{blue}{USE control\_parameters}} \\
540	~~~~~\texttt{\textcolor{blue}{USE cpulog}} \\
541	~~~~~\texttt{\textcolor{blue}{USE indices}} \\
542	~~~~~\texttt{\textcolor{blue}{USE interfaces}} \\
543	~~~~~\texttt{\textcolor{blue}{USE pegrid}} \\
544	~~~~~\texttt{\textcolor{red}{USE user}} \\
545	\par\medskip
546	~~~~~\texttt{IMPLICIT NONE} \\
547	\par\medskip
548	~~~~~\texttt{CHARACTER (LEN=$^\ast$) :: location} \\
549	\par\medskip
550	~~~~~\texttt{INTEGER :: i, j, k}};
551	\end{tikzpicture}
552	\end{center}
553	\end{itemize}
554	\item<4-> \textbf{Within the user-interface:}
555	\begin{itemize}
556	\scriptsize
557	\item by the module \texttt{\textcolor{red}{user}} (file \texttt{user\underline{ }module.f90}), which is used in every subroutine included in the interface.\\ \textbf{This module is (and should be) never used in the standard PALM code (otherwise, the default code would depend on the user\\ interface).}
558	\end{itemize}
559	\end{itemize}
560
561	\end{frame}
562
563	% Folie 11
564	\begin{frame}
565	\frametitle{Usage of \texttt{user\underline{ }actions} (I)}
566	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\tiny]
567	\scriptsize
568	\begin{itemize}
569	\item<1-> \texttt{user\underline{ }actions} is designed to add additional terms to the prognostic equations or to carry out special actions at the beginning or the end of each timestep.
570	\vspace{1.8mm}
571	\item<2-> Therefore, several calls of \texttt{user\underline{ }actions} can be found in the default PALM routines \texttt{time\underline{ }integration} and \texttt{prognostic\underline{ }equations}. The place from which it is called is communicated to the routine by a string-argument, e.g.\\
572	\ \\
573	\quad \texttt{CALL user\underline{ }actions( 'u-tendency' )}\\
574	\ \\
575	\onslide<3-> It means that this call is from a line within \texttt{prognostic\underline{ }equations}, where the tendencies for the u-component are calculated and integrated:
576	\end{itemize}
577	\vspace{-3mm}
578	\begin{center}
579	\begin{tikzpicture}[auto]
580	\node[yellow] {\texttt{DO i = nxl, nxr} \\
581	~~~\texttt{DO j = nys, nyn} \\
582	\texttt{...} \\
583	~~~~~~\texttt{CALL diffusion\_u( i, j )}\\
584	~~~~~~\texttt{CALL coriolis( i, j, 1 )} \\
585	\texttt{...}\\
586	~~~~~~\texttt{\textcolor{blue}{CALL user\_actions( i, j, 'u-tendency' )}}\\
587	\texttt{!} \\
588	\texttt{!-- Prognostic equation for u-velocity component} \\
589	~~~~~~\texttt{DO k = nzb\_u\_inner(j,i)+1, nzt} \\
590	~~~~~~~~~\texttt{u\_p(k,j,i) = u(k,j,i) + dt\_3d * ( tsc(2) * tend(k,j,i) + \&} \\
591	\hspace{4.08cm} \texttt{tsc(3) * tu\_m(k,j,i) ) \&} \\
592	\hspace{2.93cm} \texttt{- tsc(5) * rdf(k) * ( u(k,j,i) - ug(k) )}\\
593	~~~~~~\texttt{ENDDO} \\
594	\texttt{...}};
595	\end{tikzpicture}
596	\end{center}
597	% \begin{center}
598	% \includegraphics[scale=0.33]{user_defined_code_figures/user_actions_1.png}
599	% \end{center}
600	\end{frame}
601
602	% Folie 12
603	\begin{frame}
604	\frametitle{Usage of \texttt{user\underline{ }actions} (II)}
605	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\tiny]
606	\scriptsize
607	\begin{itemize}
608	\item Additional tendencies have to be included by the user at the respective code line in \texttt{user\underline{ }actions}:
609	\end{itemize}
610	\begin{center}
611	\begin{tikzpicture}[auto]
612	\node[yellow]{~\texttt{SUBROUTINE user\_actions( location )}\\
613	\texttt{...}\\
614	\texttt{!}\\
615	\texttt{!-- Here the user-defined actions follow}\\
616	\texttt{!-- No calls for single grid points are allowed at locations before and}\\
617	\texttt{!-- after the timestep, since these calls are not within an i,j-loop}\\
618	~~~~~~\texttt{SELECT CASE ( location )}\\
619	\texttt{...}\\
620	~~~~~~~~~~\texttt{CASE ( 'after\_timestep' )}\\
621	\texttt{!}\\
622	\texttt{!-- \hspace{6mm}Enter actions to be done after every timestep here}\\
623	\par\medskip
624	~~~~~~~~~~\texttt{CASE ( 'u-tendency' )}\\
625	\texttt{!}\\
626	\texttt{!-- \hspace{6mm}Enter actions to be done in the u-tendency term here}\\
627	~~~~~~~~~~~~~~\texttt{\textcolor{blue}{DO i = nxl, nxr}}\\
628	~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{DO j = nys, nyn}}\\
629	~~~~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{DO k = nxb+1, nzt}}\\
630	~~~~~~~~~~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{tend(k,j,i) = tend(k,j,i) - const * u(k,j,i) ...}}\\
631	~~~~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{ENDDO}}\\
632	~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{ENDDO}}\\
633	~~~~~~~~~~~~~~\texttt{\textcolor{blue}{ENDDO}}\\
634	\par\bigskip
635	~~~~~~~~~~\texttt{CASE ( 'v-tendency' )}\\
636	\texttt{...}};
637	\end{tikzpicture}
638	% \includegraphics[scale=0.35]{user_defined_code_figures/user_actions_2.png}
639	\end{center}
640	\end{frame}
641
642	% Folie 13
643	\begin{frame}[t]
644	\frametitle{Usage of \texttt{user\underline{ }actions} (III)}
645	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.5\textwidth, font=\Tiny]
646	\scriptsize
647	\begin{columns}[T]
648	\begin{column}{1.15\textwidth}
649	\begin{itemize}
650	\item<1-> The different versions of \texttt{prognostic\underline{ }equations} (\texttt{prognostic\underline{ }equations\underline{ }cache}, \texttt{prognostic\underline{ }equations\underline{ }vector}) contain different calls of \texttt{user\underline{ }actions}:
651	\item<2-> From \texttt{prognostic\underline{ }equations\underline{ }vector}: \hspace{0.6em}\texttt{CALL user\underline{ }actions( 'u-tendency' )}
652	\item<3-> From \texttt{prognostic\underline{ }equations},\\
653	\texttt{prognostic\underline{ }equations\underline{ }cache}:\hspace{4em}\texttt{CALL user\underline{ }actions( i, j, 'u-tendency' )}
654	\vspace{3mm}
655	\item<4-> In case that \texttt{prognostic\underline{ }equations}\\
656	\texttt{prognostic\underline{ }equations\underline{ }cache} are\\
657	used, the user has to add his code in\\
658	the interface routine\\
659	\texttt{user\underline{ }actions\underline{ }ij}:
660	\vspace{3mm}
661	\item<5-> Here, only the \texttt{k}-loop (vertical direction)\\
662	has to be used, because loops over\\
663	i and j are executed in\\
664	\texttt{prognostic\underline{ }equations\underline{ }cache}.
665	\end{itemize}
666	\end{column}
667	\end{columns}
668
669	\uncover<4->{%
670	\begin{tikzpicture}[remember picture, overlay]
671	\node [yellow,shift={(9.2 cm,3.0cm)}] at (current page.south west){~\texttt{SUBROUTINE user\_actions\_ij( i, j, location )}\\
672	\par\medskip
673	~~~~~~\texttt{USE control\_parameters}\\
674	~~~~~~\texttt{USE pegrid}\\
675	~~~~~~\texttt{USE user}\\
676	\par\medskip
677	~~~~~~\texttt{IMPLICIT NONE}\
678	\par\medskip
679	~~~~~~\texttt{CHARACTER (LEN=*) :: location}\\
680	\par\medskip
681	~~~~~~\texttt{INTEGER(iwp) :: i, idum, j}\\
682	\par\medskip
683	\texttt{!}\\
684	\texttt{!-- Here the user-defined actions follow}\\
685	\vspace{0.5mm}
686	~~~~~~\texttt{SELECT CASE ( location )}\\
687	\par\medskip
688	~~~~~~~~~\texttt{CASE ( 'u-tendency' )}\\
689	\texttt{!}\\
690	~~~~~~\texttt{!-- Enter actions to be done in the u-tendency term here}\\
691	~~~~~~~~~~~~\texttt{\textcolor{blue}{DO k = nzb+1, nzt-1}}\\
692	~~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{tend(k,j,i) = tend(k,j,i) + ...}}\\
693	~~~~~~~~~~~~\texttt{\textcolor{blue}{ENDDO}}\\
694	\par\medskip
695	~~~~~~~~~\texttt{CASE ( 'v-tendency' )}};
696	% {%
697	% \begin{tikzpicture}[remember picture, overlay]
698	% % \node[text width=14em] at (0,0) {\includegraphics[scale=0.3]{user_defined_code_figures/user_actions_3.png}};
699	% \end{tikzpicture}
700	% };
701	\end{tikzpicture}}
702
703	\end{frame}
704
705	% Folie 14
706	\begin{frame}
707	\frametitle{Steering the User-Interface}
708	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\Tiny]
709	\scriptsize
710	\begin{columns}[T]
711	\begin{column}{1.1\textwidth}
712	For steering the user-interface code, the user may want to add some additional variables and set their respective values within the parameter-file (e.g. \texttt{example\underline{ }cbl\underline{ }p3d}). This requires the following actions (example for a variable named \texttt{foo}):
713	\end{column}
714	\end{columns}
715	\vspace{1mm}
716	\begin{enumerate}
717	\item<1-> Add the variable name to module \texttt{user} in order to define it and to make it available in all user-interface subroutines. Set a default value for this variable.
718	\begin{center}
719	% \includegraphics[scale=0.3]{user_defined_code_figures/steering_1.png}
720	\begin{tikzpicture}
721	\node[yellow]{~\texttt{MODULE user}\\
722	\vspace{0.4mm}
723	\texttt{...}\\
724	\vspace{0.4mm}
725	~\texttt{REAL(wp) \hspace{0.4cm}:: ~~\textcolor{blue}{foo = 0.0}}\\
726	\vspace{0.4mm}
727	\texttt{...}\\
728	\vspace{0.4mm}
729	~\texttt{END MODULE user}};
730	\end{tikzpicture}
731	\end{center}
732	\vspace{1mm}
733	\item<2-> Add the variable to the NAMELIST \texttt{/userpar/}. This NAMELIST already contains four predefined variables.
734	\begin{center}
735	% \includegraphics[scale=0.3]{user_defined_code_figures/steering_2.png}
736	\begin{tikzpicture}
737	\node[yellow]{~\texttt{SUBROUTINE user\_parin}\\
738	\vspace{0.4mm}
739	\texttt{...}\\
740	\vspace{0.4mm}
741	~~~~~\texttt{NAMELIST ~~/userpar/ ~~ data\_output\_pr\_user, data\_output\_user,}\\
742	\vspace{0.4mm}
743	\hspace{3cm}\texttt{\textcolor{blue}{foo}, region}\\
744	\vspace{0.4mm}
745	\texttt{...}\\
746	\vspace{0.4mm}
747	~\texttt{END SUBROUTINE user\_parin}};
748	\end{tikzpicture}
749	\end{center}
750	\vspace{1mm}
751	\item<3-> Add the NAMELIST \texttt{\&userpar} to the parameter file (e.g. \texttt{example\underline{ }cbl\underline{ }p3d}) and assign a value to this variable.
752	\begin{center}
753	% \includegraphics[scale=0.3]{user_defined_code_figures/steering_3.png}
754	\begin{tikzpicture}
755	\node[yellow]{~\texttt{\&inipar ~~~ nx = ... ~~/}\\
756	\vspace{0.4mm}
757	~\texttt{\&d3par ~~~ end\_time = 3600.0, ... ~~/}\\
758	\par\smallskip
759	~\texttt{\textcolor{blue}{\&userpar ~~foo = 12345.6 ~~/}}};
760	\end{tikzpicture}
761	\end{center}
762	\vspace{1mm}
763	\item<4-> Output the variable's value using \texttt{user\underline{ }header}.
764	\end{enumerate}
765
766
767	\end{frame}
768
769	% Folie 15
770	\begin{frame}
771	\frametitle{User-Defined Output}
772	\scriptsize
773	\begin{itemize}
774	\item<2-> A very typical request of users is the calculation and output of quantities which are not part of PALM's standard output (e.g. a 3D-array of the resolved-scale vertical heat (temperature) flux).
775	\vspace{2mm}
776	\item<3-> The default user interface includes a number of subroutines which allow the calculation of user-defined quantities and output of these quantities as profiles, timeseries, 2d cross section or 3d volume data. These are e.g.\\
777	\texttt{user\underline{ }check\underline{ }data\underline{ }output}, \texttt{user\underline{ }check\underline{ }data\underline{ }output\underline{ }pr},\\
778	\texttt{user\underline{ }define\underline{ }netcdf\underline{ }grid}, \texttt{user\underline{ }statistics},\\
779	\texttt{user\underline{ }3d\underline{ }data\underline{ }averaging}, \texttt{user\underline{ }data\underline{ }output\underline{ }2d},\\
780	\texttt{user\underline{ }data\underline{ }output\underline{ }3d}.
781	\vspace{2mm}
782	\item<4-> The respective subroutines contain, as an example, code lines (written as comment lines) for calculating and output the square of the u-component velocity.
783	\vspace{2mm}
784	\item<5-> These quantities are output to PALMâs standard netCDF files, i.e.\\ \texttt{DATA\underline{ }1D\underline{ }PR\underline{ }NETCDF}, \texttt{DATA\underline{ }1D\underline{ }TS\underline{ }NETCDF}, \texttt{DATA\underline{ }2D\underline{ }XY\underline{ }NETCDF} or \texttt{DATA\underline{ }3D\underline{ }NETCDF}.
785	\vspace{2mm}
786	\item<6-> The online documentation gives very detailed instructions about how to modify the interface in order to output user-defined quantities under\\
787	\vspace{1mm}
788	\textbf{http://palm.muk.uni-hannover.de/trac/wiki/doc/app/userint/output}
789	\end{itemize}
790	\end{frame}
791
792	% Folie 16
793	\begin{frame}
794	\frametitle{User-Defined Data for Restart Runs (I)}
795	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.7\textwidth, font=\tiny]
796	\scriptsize
797	\begin{itemize}
798	\item It might be neccessary to save the values of user-defined variables at the end of a model run in order to use them for a restart run.\\
799	\ \\
800	This can be done using the routine \texttt{user\underline{ }last\underline{ }actions}.\\
801	\grqq \texttt{14}\grqq\, is the file-id for the restart file (local filename \texttt{BINOUT}):
802	\end{itemize}
803	\begin{center}
804	% \includegraphics[scale=0.3]{user_defined_code_figures/restart_1.png}
805	\begin{tikzpicture}[auto]
806	\node[yellow]{~\texttt{SUBROUTINE user\_last\_actions}\\
807	\texttt{...}\\
808	~~~~~\texttt{\textcolor{blue}{WRITE ( 14 ) 'foo \hspace{2cm}'; WRITE ( 14 ) foo}}\\
809	~~~~~\texttt{\textcolor{blue}{WRITE ( 14 ) 'bar \hspace{2cm}'; WRITE ( 14 ) bar}}
810	\par\smallskip
811	~~~~~\texttt{WRITE ( 14 ) '* end user * \hspace{0.66cm}'}
812	\par\smallskip
813	~\texttt{END SUBROUTINE user\_last\_actions}};
814	\end{tikzpicture}
815	\end{center}
816	\end{frame}
817
818	% Folie 17
819	\begin{frame}
820	\frametitle{User-Defined Data for Restart Runs (II)}
821	\tikzstyle{yellow} = [rectangle, draw, fill=yellow!30, text width=0.95\textwidth, font=\tiny]
822	\scriptsize
823	\begin{itemize}
824	\item Additionally, these variables have to be read from the restart file (file-id \grqq \texttt{13}\grqq\,, local filename \texttt{BININ}) by adding code to the routine \texttt{user\underline{ }read\underline{ }restart\underline{ }data}:
825	\end{itemize}
826	\vspace{-2.7mm}
827	\begin{center}
828	% \includegraphics[scale=0.3]{user_defined_code_figures/restart_2.png}
829	\begin{tikzpicture}
830	\node[yellow]{\texttt{~SUBROUTINE user\_read\_restart\_data( i, nxlfa, nxl\_on\_file, nxrfa, nxr\_on\_file, \&} \\
831	\hspace{3.84cm}\texttt{nynfa, nyn\_on\_file, nysfa, nys\_on\_file, \&} \\
832	\hspace{3.84cm}\texttt{offset\_xa, offset\_ya, overlap\_count, \&} \\
833	\hspace{3.84cm}\texttt{tmp\_2d, tmp\_3d )}\\
834	\texttt{...} \\
835	~~~~~\texttt{IF ( initializing\_actions == 'read\_restart\_data' ) THEN}\\
836	~~~~~~~~~\texttt{READ ( 13 ) field\_char} \\
837	~~~~~~~~~\texttt{DO WHILE ( TRIM( field\_char ) '* end user *' )}\\
838	\par\smallskip
839	~~~~~~~~~~~~~\texttt{nxlf = nxlfa(i,k)}
840	\texttt{...} \\
841	~~~~~~~~~~~~~\texttt{SELECT CASE ( TRIM( field\_char ) )}\\
842	\par\smallskip
843	~~~~~~~~~~~~~~~~~\texttt{CASE ( '\textcolor{blue}{foo}' )} \\
844	~~~~~~~~~~~~~~~~~~~~~\texttt{IF ( .NOT. ALLOCATED( \textcolor{blue}{foo} ) ) THEN}\\
845	~~~~~~~~~~~~~~~~~~~~~~~~~\texttt{ALLOCATE( \textcolor{blue}{foo}(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )}\\
846	~~~~~~~~~~~~~~~~~~~~~\texttt{ENDIF}\\
847	~~~~~~~~~~~~~~~~~~~~~\texttt{IF ( k == 1 ) READ ( 13 ) tmp\_3d}\\
848	~~~~~~~~~~~~~~~~~~~~~\texttt{\textcolor{blue}{foo}(:,nysc-nbgp:nync+nbgp,nxlc-nbgp:nxrc+nbgp) = \&} \\
849	\hspace{4.5cm}\texttt{tmp\_3d(:,nysf-nbgp:nynf+nbgp,nxlf-nbgp:nxrf+nbgp)}\\
850	\texttt{...}\\
851	~~~~~~~~~~~~~\texttt{END SELECT}\\
852	\par\smallskip
853	~~~~~~~~~\texttt{ENDDO}
854	\par\smallskip
855	~~~~~~~~~\texttt{READ ( 13 ) field\_char}\\
856	\par\smallskip
857	~~~~~~~~~\texttt{ENDDO}\\
858	~~~~~\texttt{ENDIF}\\
859	\par\smallskip
860	~\texttt{END SUBROUTINE user\_read\_restart\_data}};
861	\end{tikzpicture}
862	\end{center}
863	\end{frame}
864
865	% Folie 18
866	\begin{frame}
867	\frametitle{Using the User-Interface with \texttt{mrun}}
868	\tiny
869	\begin{columns}[T]
870	\begin{column}{1.1\textwidth}
871	\vspace{-1mm}
872	\textbf{Users can add their own (modified) user-interface to a PALM-run by carrying out the following steps:}
873	\begin{enumerate}
874	\item<2-> Copy the default (empty) user-interface files that you need (e.g. user\underline{ }module.f90, user\underline{ }parin.f90, user\underline{ }actions.f90) to a directory of your choice, e.g.:\\
875	\scriptsize
876	\par\smallskip
877	\quad \texttt{cd \~{ }/palm/current\underline{ }version}\\
878	\quad \texttt{mkdir -p USER\underline{ }CODE/example\underline{ }cbl}\\
879	\quad \texttt{cp trunk/SOURCE/user\underline{ }module.f90 USER\underline{ }CODE/example\underline{ }cbl/user\underline{ }module.f90}\\
880	\quad \texttt{cp trunk/SOURCE/user\underline{ }parin.f90\hspace{1em}USER\underline{ }CODE/example\underline{ }cbl/user\underline{ }parin.f90}\\
881	\quad \texttt{...}
882
883	\item<3-> Set an additional path in the configuration file \texttt{.mrun.config} to allow \texttt{mrun} to find and include this file:\\
884	\tiny
885	\par\smallskip
886	\scriptsize \quad \texttt{\%add\underline{ }source\underline{ }path \hspace{1em} \$base\underline{ }directory/USER\underline{ }CODE/\$fname}
887	\par\smallskip
888	\item<4-> Modify the interface routines according to your needs.
889	\item<5-> Start a PALM run by executing\\
890	\par\smallskip
891	\scriptsize \quad \texttt{mrun -d example\underline{ }cbl ...}\\
892	\par\smallskip
893	\tiny
894	The files user\underline{ }*.f90 will be automatically compiled within the job / interactive run and will replace the respective PALM default user-interface files.
895	\end{enumerate}
896	\begin{itemize}
897	\item<6-> \textbf{The modified user-interface file cannot be pre-compiled by using} \texttt{mbuild}!
898	\item<7-> The above method allows to use different user-interfaces for different runs. Just store the respective interface-files in subdirectories \texttt{USER\underline{ }CODE/abcd}, \texttt{USER\underline{ }CODE/cdef}, etc. and start \texttt{mrun} with option \grqq \texttt{-d abcd}\grqq, \grqq \texttt{-d cdef}\grqq, etc.
899	\end{itemize}
900
901	\end{column}
902	\end{columns}
903
904	\end{frame}
905
906	\end{document}

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source: palm/trunk/TUTORIAL/SOURCE/user_defined_code.tex @ 1832

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