source: palm/trunk/TUTORIAL/SOURCE/mrun_data_analysis.tex @ 965

Last change on this file since 965 was 945, checked in by maronga, 12 years ago

added/updated several tutorial files

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1% $Id: mrun_data_analysis.tex 945 2012-07-17 15:43:01Z raasch $
2\input{header_tmp.tex}
3%\input{../header_lectures.tex}
4
5\usepackage[utf8]{inputenc}
6\usepackage{ngerman}
7\usepackage{pgf}
8\usetheme{Dresden}
9\usepackage{subfigure}
10\usepackage{units}
11\usepackage{multimedia}
12\usepackage{hyperref}
13\newcommand{\event}[1]{\newcommand{\eventname}{#1}}
14\usepackage{xmpmulti}
15\usepackage{tikz}
16\usetikzlibrary{shapes,arrows,positioning}
17\usetikzlibrary{decorations.markings}             %neues paket
18\usetikzlibrary{decorations.pathreplacing}        %neues paket
19\def\Tiny{\fontsize{4pt}{4pt}\selectfont}
20\usepackage{amsmath}
21\usepackage{amssymb}
22\usepackage{multicol}
23\usepackage{pdfcomment}
24\usepackage{graphicx}
25\usepackage{listings}
26\lstset{showspaces=false,language=fortran,basicstyle=
27        \ttfamily,showstringspaces=false,captionpos=b}
28
29\institute{Institut fÌr Meteorologie und Klimatologie, Leibniz UniversitÀt Hannover}
30\date{last update: \today}
31\event{PALM Seminar}
32\setbeamertemplate{navigation symbols}{}
33
34\setbeamertemplate{footline}
35  {
36    \begin{beamercolorbox}[rightskip=-0.1cm]&
37     {\includegraphics[height=0.65cm]{imuk_logo.pdf}\hfill \includegraphics[height=0.65cm]{luh_logo.pdf}}
38    \end{beamercolorbox}
39    \begin{beamercolorbox}[ht=2.5ex,dp=1.125ex,
40      leftskip=.3cm,rightskip=0.3cm plus1fil]{title in head/foot}
41      {\leavevmode{\usebeamerfont{author in head/foot}\insertshortauthor} \hfill \eventname \hfill \insertframenumber \; / \inserttotalframenumber}
42    \end{beamercolorbox}
43    \begin{beamercolorbox}[colsep=1.5pt]{lower separation line foot}
44    \end{beamercolorbox}
45  }
46%\logo{\includegraphics[width=0.3\textwidth]{luhimuk_logo.pdf}}
47
48\title[Data Analysis]{Data Analysis}
49\author{Siegfried Raasch}
50
51\begin{document}
52
53% Folie 1
54\begin{frame}
55\titlepage
56\end{frame}
57
58\section{Data Analysis}
59\subsection{Data Analysis}
60
61% Folie 2
62\begin{frame}
63   \frametitle{PALM Data Analysis}
64   
65   \footnotesize
66   PALM  offers different ways of standard output to analyze the simulation data:
67   \begin{enumerate}
68      \item<2-> Run control informations (for certain timesteps)
69      \item<3-> Mean vertical profiles
70      \begin{itemize}
71         \item[-]<3-> horizontally averaged, instantaneous or time-averaged
72      \end{itemize}
73      \item<4-> Time series
74      \item<5-> Two-dimensional cross sections ($xy$, $xz$, $yz$)
75      \begin{itemize}
76         \item[-]<5-> instantaneous or time-averaged, + averaged along 3rd dimension
77      \end{itemize}
78      \item<6-> Complete three-dimensional data arrays
79      \begin{itemize}
80         \item[-]<6-> instantaneous or time-averaged
81      \end{itemize}
82   \end{enumerate}
83   \quad \onslide<7-> Others (spectra, particle data)\\
84   \vspace{3mm}
85   \onslide<8-> First item is pure ASCII-data to give a short overview of the run. All other output is in netCDF format and can be graphically displayed.\\
86   \vspace{2mm}
87   Additionally, power spectra can be output using the spectra-package (use \texttt{mrun}-option \texttt{“-p spectra“}).
88   
89\end{frame}
90
91% Folie 3
92\begin{frame}
93   \tikzstyle{yellow} = [rectangle, fill=yellow!20, font=\scriptsize, minimum height=1.2cm]
94   \tikzstyle{purple} = [rectangle, fill=magenta!10, font=\scriptsize, minimum height=0.9cm]
95   \tikzstyle{white} = [rectangle, font=\tiny, minimum height=0.9cm]
96     
97   \frametitle{Processing Standard Output Data with Graphics Software (Public Domain-Software)}
98   
99   \footnotesize
100   The standard output files are in netCDF format which can be easily displayed with \texttt{ncview}, \texttt{ncl}, or \texttt{ferret}.
101   
102   \begin{tikzpicture}[auto, node distance=0]
103   
104      % Zeile 1
105      \node [yellow, text width=0.2\textwidth] (1) {standard output};
106      \node [yellow, text width=0.25\textwidth, right=0.0cm of 1] (2) {names of local files created by PALM};   
107      \node [yellow, text width=0.25\textwidth, right=0.0cm of 2] (3) {suffix of permanent files as defined in \texttt{.mrun.config}};   
108      \node [yellow, text width=0.25\textwidth, right=0.0cm of 3] (4) {call of graphics software};   
109     
110      % Zeile 2     
111      \node [purple, text width=0.2\textwidth, below=0.0cm of 1] (12) {mean vertical profiles};
112      \node [white, text width=0.25\textwidth, below=0.0cm of 2] (22) {\texttt{DATA\_1D\_PR\_NETCDF}};
113      \node [white, text width=0.25\textwidth, below=0.0cm of 3] (32) {\texttt{\_pr.nc}};
114      \node [white, text width=0.25\textwidth, below=0.0cm of 4] (42) {\texttt{ncview <filename>}\\
115      \texttt{palmplot pr <options>}\\
116      \texttt{ferret -gui}};
117     
118      % Zeile 3     
119      \node [purple, text width=0.2\textwidth, below=0.0cm of 12] (13) {time series};
120      \node [white, text width=0.25\textwidth, below=0.0cm of 22] (23) {\texttt{DATA\_1D\_TS\_NETCDF}};
121      \node [white, text width=0.25\textwidth, below=0.0cm of 32] (33) {\texttt{\_ts.nc}};
122      \node [white, text width=0.25\textwidth, below=0.0cm of 42] (43) {\texttt{ncview <filename>}\\
123      \texttt{palmplot ts <options>}\\
124      \texttt{ferret -gui}};
125     
126      % Zeile 4           
127      \node [purple, text width=0.2\textwidth, minimum height=1.5cm, below=0.0cm of 13] (14) {2d-cross-sections};
128      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 23] (24) {\texttt{DATA\_2D\_XY\_NETCDF}\\ \texttt{DATA\_2D\_XZ\_NETCDF}\\ \texttt{DATA\_2D\_YZ\_NETCDF}};
129      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 33] (34) {\texttt{\_xy.nc}\\ \texttt{\_xz.nc}\\ \texttt{\_yz.nc}};
130      \node [white, text width=0.25\textwidth, minimum height=1.5cm, below=0.0cm of 43] (44) {\texttt{ncview <filename>}\\
131      \texttt{palmplot xy <options>}\\
132      \texttt{palmplot xz <options>}\\
133      \texttt{palmplot yz <options>}\\
134      \texttt{ferret -gui}};
135                 
136      % Zeile 5     
137      \node [purple, text width=0.2\textwidth, below=0.0cm of 14] (15) {3d-data};
138      \node [white, text width=0.25\textwidth, below=0.0cm of 24] (25) {\texttt{DATA\_3D\_NETCDF}};
139      \node [white, text width=0.25\textwidth, below=0.0cm of 34] (35) {\texttt{\_3d.nc}}
140      \node [white, text width=0.25\textwidth, below=0.0cm of 44] (45) {\texttt{ncview <filename>}\\
141      \texttt{palmplot xy <options>}\\
142      \texttt{ferret -gui}};
143   
144
145   \end{tikzpicture}
146\end{frame}
147
148% Folie 4
149\begin{frame}
150   \frametitle{User Actions Necessary to Get Output}
151   Example for the case of mean vertical profiles:
152   \footnotesize
153   \begin{enumerate}
154   
155      \item<2-> Carefully think about, which variables you want to analyze
156      \begin{itemize}
157         \scriptsize
158              \item[]<2-> e.g. temperature, wind, etc., resolved- or subgrid-scale?, output interval?, should they be time averaged?
159      \end{itemize}
160     
161      \item<3-> Find and set the appropriate output parameters in the parameter file
162      \begin{itemize}
163         \scriptsize
164              \item[]<3-> \texttt{data\_output\_pr = 'pt', 'u', 'w ''pt'' ',  dt\_dopr = 900.0,}
165              \item[]<3-> \texttt{averaging\_interval\_pr = 600.0, dt\_averaging\_input\_pr = 10.0}
166      \end{itemize}   
167     
168      \item<4-> Check, if the necessary file connection statements exist in the .mrun.config file
169      \begin{itemize}
170         \scriptsize
171              \item[]<4-> \texttt{DATA\_1D\_PR\_NETCDF   out:loc:tr  pr\#      \~{}/palm/current\_version/JOBS/\$fname/OUTPUT  \_pr  nc}
172      \end{itemize} 
173     
174      \item<5-> Don't forget to activate the file connection statements by setting the correct activation string(s) in \texttt{mrun}-option \texttt{-r}
175      \begin{itemize}
176         \scriptsize
177              \item[]<5-> \texttt{mrun ... -r ''... pr\# ...'' ...}
178      \end{itemize}   
179     
180      \item<6-> After job completion, change to the OUTPUT-directory and call the appropriate graphics software
181      \begin{itemize}
182         \scriptsize
183              \item[]<6-> \texttt{ncview <filename>} or \texttt{palmplot pr <options>}
184      \end{itemize} 
185   \end{enumerate}   
186
187\end{frame}
188
189\end{document}
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