source: palm/trunk/SOURCE/user_read_restart_data.f90 @ 392

Last change on this file since 392 was 392, checked in by raasch, 15 years ago


Adapted for machine lck
(mrun, mbuild, subjob)

bc_lr/bc_ns in most subroutines replaced by LOGICAL variables bc_lr_cyc,
bc_ns_cyc for speed optimization
(check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)

Additional timestep criterion in case of simulations with plant canopy (timestep)

Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1

Clipping of dvrp output implemented. Default colourtable for particles
implemented, particle attributes (color, dvrp_size) can be set with new
parameters particle_color, particle_dvrpsize, color_interval,
dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
and are controlled with existing parameters slicer_range_limits.

Ocean atmosphere coupling allows to use independent precursor runs in order
to account for different spin-up times. The time when coupling has to be
started is given by new inipar parameter coupling_start_time. The precursor
ocean run has to be started using new mrun option "-y" in order to add
appendix "_O" to all output files.
(check_for_restart, check_parameters, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, header, init_coupling, modules, mrun,
parin, read_var_list, surface_coupler, time_integration, write_var_list)

Polygon reduction for topography and ground plate isosurface. Reduction level
for buildings can be chosen with parameter cluster_size. (init_dvrp)

External pressure gradient (check_parameters, header, init_3d_model, modules,
parin, prognostic_equations, read_var_list, write_var_list)

New topography case 'single_street_canyon' (header, init_grid, modules, parin,
read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)

Option to predefine a target bulk velocity for conserve_volume_flow
(check_parameters, header, init_3d_model, modules, parin, read_var_list,

Option for user defined 2D data output in xy cross sections at z=nzb+1
(data_output_2d, user_data_output_2d)

xy cross section output of surface heatfluxes (latent, sensible)
(average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
sum_up_3d_data, write_3d_binary)

average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list

New: set_particle_attributes, set_slicer_attributes_dvrp


lcmuk changed to lc to avoid problems with Intel compiler on sgi-ice

For extended NetCDF files, the updated title attribute includes an update of
time_average_text where appropriate. (netcdf)

In case of restart runs without extension, initial profiles are not written
to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)

Small change in formatting of the message handling routine concering the output in the
job protocoll. (message)

initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
independent of turbulent_inflow (check_parameters, header, init_3d_model)

2 NetCDF error numbers changed. (data_output_3d)

A Link to the website appendix_a.html is printed for further information
about the possible errors. (message)

Temperature gradient criterion for estimating the boundary layer height
replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)

NetCDF unit attribute in timeseries output in case of statistic regions added

Output of NetCDF messages with aid of message handling routine.
(check_open, close_file, data_output_2d, data_output_3d,
data_output_profiles, data_output_ptseries, data_output_spectra,
data_output_tseries, netcdf, output_particles_netcdf)

Output of messages replaced by message handling routine.
(advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
user_parin, user_read_restart_data, user_spectra )

Maximum number of tails is calculated from maximum number of particles and
skip_particles_for_tail (init_particles)

Value of vertical_particle_advection may differ for each particle group
(advec_particles, header, modules)

First constant in array den also defined as type double. (eqn_state_seawater)

Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)

topography_grid_convention moved from userpar to inipar (check_parameters,
header, parin, read_var_list, user_check_parameters, user_header,
user_init_grid, user_parin, write_var_list)

Default value of grid_matching changed to strict.

Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
for coupled runs on ibmy (mrun, subjob)

advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list


Bugfix: Initial hydrostatic pressure profile in case of ocean runs is now
calculated in 5 iteration steps. (init_ocean)

Bugfix: wrong sign in buoyancy production of ocean part in case of not using
the reference density (only in 3D routine production_e) (production_e)

Bugfix: output of averaged 2d/3d quantities requires that an avaraging
interval has been set, respective error message is included (check_parameters)

Bugfix: Output on unit 14 only if requested by write_binary.

Bugfix to avoid zero division by km_neutral (production_e)

Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
updated attributes are larger than their original size, NF90_PUT_ATT is called
in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
possible performance loss; an alternative strategy would be to ensure equal
attribute size in a job chain. (netcdf)

Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)

Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)

Bugfix: error in formatting the output (message)

Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)

Typographical error: unit of wpt in dots_unit (modules)

Bugfix: error in check, if particles moved further than one subdomain length.
This check must not be applied for newly released particles. (advec_particles)

Bugfix: several tail counters are initialized, particle_tail_coordinates is
only written to file if its third index is > 0, arrays for tails are allocated
with a minimum size of 10 tails if there is no tail initially (init_particles,

Bugfix: pressure included for profile output (check_parameters)

Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines

Bugfix: output if particle time series only if particle advection is switched
on. (time_integration)

Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)

Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)

Typographical errors (netcdf)

If the inversion height calculated by the prerun is zero, inflow_damping_height
must be explicitly specified (init_3d_model)

Small bugfix concerning 3d 64bit netcdf output format (header)

Bugfix: dt_fixed removed from the restart file, because otherwise, no change
from a fixed to a variable timestep would be possible in restart runs.
(read_var_list, write_var_list)

Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)

advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, init_ocean, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list

  • Property svn:keywords set to Id
File size: 3.4 KB
1 SUBROUTINE user_read_restart_data( i, nxlfa, nxl_on_file, nxrfa, nxr_on_file, &
2                                    nynfa, nyn_on_file, nysfa, nys_on_file,    &
3                                    offset_xa, offset_ya, overlap_count,       &
4                                    tmp_2d, tmp_3d )
7! Current revisions:
8! -----------------
11! Former revisions:
12! -----------------
13! $Id: user_read_restart_data.f90 392 2009-09-24 10:39:14Z raasch $
15! 274 2009-03-26 15:11:21Z heinze
16! Output of messages replaced by message handling routine.
18! 220 2008-12-18 07:00:36Z raasch
19! reading mechanism revised (subdomain/total domain size can vary arbitrarily
20! between current and previous run),
21! former file user_interface.f90 split into one file per subroutine
23! Description:
24! ------------
25! Reading restart data from file(s)
26! Subdomain index limits on file are given by nxl_on_file, etc.
27! Indices nxlc, etc. indicate the range of gridpoints to be mapped from the
28! subdomain on file (f) to the subdomain of the current PE (c). They have been
29! calculated in routine read_3d_binary.
32    USE control_parameters
33    USE indices
34    USE pegrid
35    USE user
39    CHARACTER (LEN=20) :: field_char
41    INTEGER ::  i, k, nxlc, nxlf, nxl_on_file, nxrc, nxrf, nxr_on_file, nync, &
42                nynf, nyn_on_file, nysc, nysf, nys_on_file, overlap_count
44    INTEGER, DIMENSION(numprocs_previous_run,1000) ::  nxlfa, nxrfa, nynfa, &
45                                                       nysfa, offset_xa, &
46                                                       offset_ya
48    REAL, DIMENSION(nys_on_file-1:nyn_on_file+1,nxl_on_file-1:nxr_on_file+1) ::&
49          tmp_2d
51    REAL, DIMENSION(nzb:nzt+1,nys_on_file-1:nyn_on_file+1, &
52                    nxl_on_file-1:nxr_on_file+1) ::        &
53          tmp_3d
56!-- Here the reading of user-defined restart data follows:
57!-- Sample for user-defined output
59!    IF ( initializing_actions == 'read_restart_data' )  THEN
60!       READ ( 13 )  field_char
61!       DO  WHILE ( TRIM( field_char ) /= '*** end user ***' )
63!          DO  k = 1, overlap_count
65!             nxlf = nxlfa(i,k)
66!             nxlc = nxlfa(i,k) + offset_xa(i,k)
67!             nxrf = nxrfa(i,k)
68!             nxrc = nxrfa(i,k) + offset_xa(i,k)
69!             nysf = nysfa(i,k)
70!             nysc = nysfa(i,k) + offset_ya(i,k)
71!             nynf = nynfa(i,k)
72!             nync = nynfa(i,k) + offset_ya(i,k)
75!             SELECT CASE ( TRIM( field_char ) )
77!                CASE ( 'u2_av' )
78!                   IF ( .NOT. ALLOCATED( u2_av ) ) THEN
79!                      ALLOCATE( u2_av(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
80!                   ENDIF
81!                   IF ( k == 1 )  READ ( 13 )  tmp_3d
82!                   u2_av(:,nysc-1:nync+1,nxlc-1:nxrc+1) = &
83!                                          tmp_3d(:,nysf-1:nynf+1,nxlf-1:nxrf+1)
85!                CASE DEFAULT
86!                   WRITE( message_string, * ) 'unknown variable named "',  &
87!                                         TRIM( field_char ), '" found in', &
88!                                         '&data from prior run on PE ', myid
89!                   CALL message( 'user_spectra', 'UI0012', 1, 2, 0, 6, 0 )
91!             END SELECT
93!          ENDDO
95!          READ ( 13 )  field_char
97!       ENDDO
98!    ENDIF
100 END SUBROUTINE user_read_restart_data
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