source: palm/trunk/SOURCE/posix_interface_mod.f90 @ 4635

!> @file posix_interface_mod.f90
!------------------------------------------------------------------------------!
! This file is part of the PALM model system.
!
! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General
! Public License as published by the Free Software Foundation, either version 3 of the License, or
! (at your option) any later version.
!
! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the
! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
! Public License for more details.
!
! You should have received a copy of the GNU General Public License along with PALM. If not, see
! <http://www.gnu.org/licenses/>.
!
! Copyright 1997-2020 Leibniz Universitaet Hannover
! -------------------------------------------------------------------------------------------------!
!
! Current revisions:
! -----------------
!
!
! Former revisions:
! -----------------
! $Id: posix_interface_mod.f90 4628 2020-07-29 07:23:03Z suehring $
! extensions required for MPI-I/O of particle data to restart files
! 
! 4495 2020-04-13 20:11:20Z raasch
! Initial version (K. Ketelsen)
!
! 
!
! Description:
! ------------
!> Interface to some POSIX system calls, mainly used for read/write of restart files
!> in non-parallel mode in MPI-IO compatible format.
!--------------------------------------------------------------------------------------------------!
 MODULE posix_interface

    USE ISO_C_BINDING

    USE kinds

    IMPLICIT NONE

    PRIVATE

    SAVE

!
!-- Definitions copied from C include file fcntl.h
    INTEGER, PARAMETER ::  O_RDONLY =  0
    INTEGER, PARAMETER ::  O_WRONLY =  1
    INTEGER, PARAMETER ::  O_RDWR   =  2
    INTEGER, PARAMETER ::  O_CREAT  = 64  !> 0100 octal
    INTEGER, PARAMETER ::  SEEK_SET =  0


!
!-- Interfaces for POSIX calls
    INTERFACE
       INTEGER(C_INT)  FUNCTION C_OPEN( pathname, flags, mode )  BIND( C, NAME = 'open' )
          USE ISO_C_BINDING
          IMPLICIT NONE
          CHARACTER(KIND=C_CHAR), DIMENSION(128) ::  pathname
          INTEGER(KIND=C_INT), VALUE             ::  flags
          INTEGER(KIND=C_INT), VALUE             ::  mode
       END FUNCTION C_OPEN
    END INTERFACE

   INTERFACE
      INTEGER(C_SIZE_T)  FUNCTION C_LSEEK( fd, offset, whence )  BIND( C, NAME = 'lseek' )
         USE ISO_C_BINDING
         IMPLICIT NONE
         INTEGER(KIND=C_INT), VALUE              ::  fd
         INTEGER(KIND=C_SIZE_T), VALUE           ::  offset
         INTEGER(KIND=C_INT), VALUE              ::  whence
      END FUNCTION C_LSEEK
   END INTERFACE

!
!-- The read system call uses values of type off_t. There is no Fortran C_OFF_T, therefore  C_SIZE_T
!-- has been used here, assuming both are 8 byte integers.
    INTERFACE
       INTEGER(C_SIZE_T)  FUNCTION C_READ( fd, buf, nr_byte )  BIND(C, NAME = 'read' )
          USE ISO_C_BINDING
          IMPLICIT NONE
          INTEGER(KIND=C_INT), VALUE            ::  fd
          TYPE(C_PTR), VALUE                    ::  buf
          INTEGER(KIND=C_SIZE_T), VALUE         ::  nr_byte
          END FUNCTION C_READ
    END INTERFACE

    INTERFACE
       INTEGER(C_SIZE_T)  FUNCTION C_WRITE( fd, buf, nr_byte )  BIND( C, NAME = 'write' )
          USE ISO_C_BINDING
          IMPLICIT NONE
          INTEGER(KIND=C_INT), VALUE            ::  fd
          TYPE(C_PTR), VALUE                    ::  buf
          INTEGER(KIND=C_SIZE_T), VALUE         ::  nr_byte
       END FUNCTION C_WRITE
    END INTERFACE

    INTERFACE
       INTEGER(C_INT)  FUNCTION C_CLOSE( fd )  BIND( C, NAME = 'close' )
          USE ISO_C_BINDING
          IMPLICIT NONE
          INTEGER(KIND=C_INT), VALUE            ::  fd
       END FUNCTION C_CLOSE
    END INTERFACE

!
!-- PALM interfaces
    INTERFACE posix_close
       MODULE PROCEDURE posix_close
    END INTERFACE posix_close

    INTERFACE posix_lseek
       MODULE PROCEDURE posix_lseek
    END INTERFACE posix_lseek

    INTERFACE posix_open
       MODULE PROCEDURE posix_open
    END INTERFACE posix_open

    INTERFACE posix_read
       MODULE PROCEDURE posix_read
       MODULE PROCEDURE posix_read_char_array
       MODULE PROCEDURE posix_read_int_1d
       MODULE PROCEDURE posix_read_int_2d
       MODULE PROCEDURE posix_read_i4_3d
       MODULE PROCEDURE posix_read_i8_3d
       MODULE PROCEDURE posix_read_offset_1d
       MODULE PROCEDURE posix_read_real_1d
       MODULE PROCEDURE posix_read_real_2d
       MODULE PROCEDURE posix_read_real_3d
    END INTERFACE posix_read

    INTERFACE posix_write
       MODULE PROCEDURE posix_write
       MODULE PROCEDURE posix_write_char_array
       MODULE PROCEDURE posix_write_int_1d
       MODULE PROCEDURE posix_write_int_2d
       MODULE PROCEDURE posix_write_i4_3d
       MODULE PROCEDURE posix_write_i8_3d
       MODULE PROCEDURE posix_write_offset_1d
       MODULE PROCEDURE posix_write_real_1d
       MODULE PROCEDURE posix_write_real_2d
       MODULE PROCEDURE posix_write_real_3d
    END INTERFACE posix_write

    PUBLIC posix_close, posix_lseek, posix_open, posix_read, posix_write

 CONTAINS

 INTEGER FUNCTION posix_open( file_name, rd_flag )

    IMPLICIT NONE

    CHARACTER(LEN=*), INTENT(IN)            ::  file_name
    CHARACTER(LEN=1), DIMENSION(:), POINTER ::  f_string
    CHARACTER(LEN=128), TARGET              ::  lo_file_name

    INTEGER(C_INT)                          ::  fd
    INTEGER(C_INT)                          ::  flags
    INTEGER(C_INT)                          ::  name_len
    INTEGER(C_INT)                          ::  mode
    INTEGER, DIMENSION(1)                   ::  bufshape

    LOGICAL, INTENT(IN)                     ::  rd_flag

    TYPE(C_PTR)                             ::  ptr


!
!-- Note: There might be better solutions to convert FORTRAN string to C string but this works on
!-- different FORTRAN compiler
    name_len     = LEN( TRIM( file_name ) ) + 1
    lo_file_name = TRIM( file_name ) // CHAR(0)
    ptr          = C_LOC( lo_file_name(1:1) )
    bufshape(1)  = name_len
    CALL C_F_POINTER( ptr, f_string, bufshape )

    mode = 420  ! Mode 644

    IF ( rd_flag )  THEN
       flags = O_RDONLY
       fd    = C_OPEN (f_string, flags, mode)  ! Open for reading
    ELSE
       flags = O_WRONLY + O_CREAT
       fd    = C_OPEN (f_string, flags, mode)  ! Open for writing
    ENDIF

    posix_open = fd

 END FUNCTION posix_open



 SUBROUTINE posix_lseek( fid, offset )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                ::  fid
    INTEGER(KIND=C_INT)                ::  my_fid
    INTEGER(KIND=C_SIZE_T), INTENT(IN) ::  offset
    INTEGER(KIND=C_SIZE_T)             ::  retval
    INTEGER(KIND=C_INT)                ::  whence


    my_fid = fid
    whence = SEEK_SET

    retval = C_LSEEK( my_fid, offset, whence )

 END SUBROUTINE posix_lseek



 SUBROUTINE posix_read_int_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER(KIND=iwp), INTENT(IN), TARGET, DIMENSION(:) ::  data
    INTEGER, INTENT(IN)                                 ::  fid
    INTEGER                                             ::  nr_byte
    INTEGER, INTENT(IN)                                 ::  nw

    TYPE(C_PTR)                                         ::  buf


    nr_byte = nw*iwp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_int_1d



 SUBROUTINE posix_read_int_2d( fid, data, nw )

    IMPLICIT NONE

    INTEGER(KIND=iwp), INTENT(IN), TARGET, DIMENSION(:,:) ::  data
    INTEGER, INTENT(IN)                                   ::  fid
    INTEGER                                               ::  nr_byte
    INTEGER, INTENT(IN)                                   ::  nw

    TYPE(C_PTR)                                           ::  buf


    nr_byte = nw * iwp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_int_2d



 SUBROUTINE posix_read_i4_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER(KIND=isp), INTENT(IN), TARGET, DIMENSION(:,:,:) ::  data         !<
    INTEGER, INTENT(IN)                                     ::  fid          !<
    INTEGER                                                 ::  nr_byte      !<
    INTEGER, INTENT(IN)                                     ::  nw           !<

    TYPE(C_PTR)                                             ::  buf          !<


    nr_byte = nw * isp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_i4_3d



 SUBROUTINE posix_read_i8_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER(KIND=idp), INTENT(IN), TARGET, DIMENSION(:,:,:) ::  data         !<
    INTEGER, INTENT(IN)                                     ::  fid          !<
    INTEGER                                                 ::  nr_byte      !<
    INTEGER, INTENT(IN)                                     ::  nw           !<

    TYPE(C_PTR)                                             ::  buf          !<


    nr_byte = nw * idp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_i8_3d



 SUBROUTINE posix_read_offset_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER(KIND=C_SIZE_T), INTENT(IN), TARGET, DIMENSION(:) ::  data
    INTEGER, INTENT(IN)                                      ::  fid
    INTEGER                                                  ::  nr_byte
    INTEGER, INTENT(IN)                                      ::  nw
    TYPE(C_PTR)                                              ::  buf


    nr_byte = nw * C_SIZE_T
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_offset_1d



 SUBROUTINE posix_read_real_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                             ::  fid
    INTEGER                                         ::  nr_byte
    INTEGER, INTENT(IN)                             ::  nw

    REAL(KIND=wp), INTENT(IN), TARGET, DIMENSION(:) ::  data

    TYPE(C_PTR)                                     ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_real_1d



 SUBROUTINE posix_read_real_2d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                  ::  fid
    INTEGER                                              ::  nr_byte
    INTEGER, INTENT(IN)                                  ::  nw

    REAL(KIND=wp), INTENT(INOUT), TARGET, DIMENSION(:,:) ::  data

    TYPE(C_PTR)                                          ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_real_2d



 SUBROUTINE posix_read_real_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                    ::  fid
    INTEGER                                                ::  nr_byte
    INTEGER, INTENT(IN)                                    ::  nw

    REAL(KIND=wp), INTENT(INOUT), TARGET, DIMENSION(:,:,:) ::  data

    TYPE(C_PTR)                                            ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_read( fid, buf, nr_byte )

 END SUBROUTINE posix_read_real_3d



 SUBROUTINE posix_read( fid, buf, nb )

    IMPLICIT NONE

    INTEGER, INTENT(IN)    ::  fid
    INTEGER(KIND=C_INT)    ::  my_fid
    INTEGER , INTENT(IN)   ::  nb
    INTEGER(KIND=C_SIZE_T) ::  nr_byte
    INTEGER(KIND=C_SIZE_T) ::  retval

    TYPE(C_PTR)            ::  buf


    my_fid  = fid
    nr_byte = nb

    retval = C_READ( my_fid, buf, nr_byte )

!
!-- The posix standard says that is not guaranteed that all bytes are read in one read system call.
!-- If retval is not equal to nr_byte, another system call has to be issued.
!-- However, in all Unix distributions it is commonly accepted, that all bytes are read in one call
!-- during during disk-IO. Therefore, here is only an error query and no reading in a while loop.
    IF ( retval /= nr_byte )  THEN
        WRITE(6,*) 'Number of bytes read does not match the number of requested bytes'
        CALL abort
    ENDIF

 END SUBROUTINE posix_read



 SUBROUTINE posix_read_char_array( fid, data )

    IMPLICIT NONE

    CHARACTER(LEN=*), DIMENSION(:)   ::  data
    CHARACTER(LEN=LEN(data)), TARGET ::  data_buf

    INTEGER, INTENT(IN)              ::  fid
    INTEGER                          ::  i
    INTEGER(KIND=C_INT)              ::  my_fid
    INTEGER(KIND=C_SIZE_T)           ::  name_len
    INTEGER(KIND=C_SIZE_T)           ::  retval

    TYPE(C_PTR)                      ::  ptr


    my_fid  = fid

    DO  i = 1, SIZE( data )
       data_buf = data(i)
       name_len = LEN(data(i))
       ptr      = C_LOC( data_buf(1:1) )
       retval   = C_READ( my_fid, ptr, name_len )
       data(i)  = data_buf
    ENDDO

 END SUBROUTINE posix_read_char_array



 SUBROUTINE posix_write_int_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                 ::  fid
    INTEGER(KIND=C_INT)                                 ::  my_fid
    INTEGER(KIND=C_SIZE_T)                              ::  nr_byte
    INTEGER , INTENT(IN)                                ::  nw
    INTEGER(KIND=C_SIZE_T)                              ::  retval

    INTEGER(KIND=iwp), INTENT(IN), TARGET, DIMENSION(:) ::  data

    TYPE(C_PTR)                                         ::  buf


    my_fid  = fid
    nr_byte = nw * iwp
    buf     = C_LOC( data )

    retval = C_WRITE( my_fid, buf, nr_byte )

 END SUBROUTINE posix_write_int_1d



 SUBROUTINE posix_write_int_2d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                   ::  fid
    INTEGER                                               ::  nr_byte
    INTEGER, INTENT(IN)                                   ::  nw

    INTEGER(KIND=iwp), INTENT(IN), TARGET, DIMENSION(:,:) ::  data

    TYPE(C_PTR)                                           :: buf


    nr_byte = nw * iwp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_int_2d



 SUBROUTINE posix_write_i4_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                     ::  fid        !<
    INTEGER                                                 ::  nr_byte    !<
    INTEGER, INTENT(IN)                                     ::  nw         !<

    INTEGER(KIND=isp), INTENT(IN), TARGET, DIMENSION(:,:,:) ::  data       !<

    TYPE(C_PTR)                                             ::  buf        !<


    nr_byte = nw * isp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_i4_3d



 SUBROUTINE posix_write_i8_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                     ::  fid        !<
    INTEGER                                                 ::  nr_byte    !<
    INTEGER, INTENT(IN)                                     ::  nw         !<

    INTEGER(KIND=idp), INTENT(IN), TARGET, DIMENSION(:,:,:) ::  data       !<

    TYPE(C_PTR)                                             ::  buf        !<


    nr_byte = nw * idp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_i8_3d



 SUBROUTINE posix_write_offset_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                      ::  fid
    INTEGER                                                  ::  nr_byte
    INTEGER, INTENT(IN)                                      ::  nw

    INTEGER(KIND=C_SIZE_T), INTENT(IN), TARGET, DIMENSION(:) ::  data

    TYPE(C_PTR)                                              ::  buf


    nr_byte = nw * STORAGE_SIZE( data(1) ) / 8
    buf     = C_LOC( data )

    CALL posix_write(fid, buf, nr_byte )

 END SUBROUTINE posix_write_offset_1d



 SUBROUTINE posix_write_real_1d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                             ::  fid
    INTEGER                                         ::  nr_byte
    INTEGER, INTENT(IN)                             ::  nw

    REAL(KIND=wp), INTENT(IN), TARGET, DIMENSION(:) ::  data

    TYPE(C_PTR)                                     ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_real_1d



 SUBROUTINE posix_write_real_2d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                  ::  fid
    INTEGER                                              ::  nr_byte
    INTEGER, INTENT(IN)                                  ::  nw

    REAL(KIND=wp), INTENT(INOUT), TARGET, DIMENSION(:,:) ::  data

    TYPE(C_PTR)                                          ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_real_2d



 SUBROUTINE posix_write_real_3d( fid, data, nw )

    IMPLICIT NONE

    INTEGER, INTENT(IN)                                    ::  fid
    INTEGER                                                ::  nr_byte
    INTEGER, INTENT(IN)                                    ::  nw

    REAL(KIND=wp), INTENT(INOUT), TARGET, DIMENSION(:,:,:) ::  data

    TYPE(C_PTR)                                            ::  buf


    nr_byte = nw * wp
    buf     = C_LOC( data )

    CALL posix_write( fid, buf, nr_byte )

 END SUBROUTINE posix_write_real_3d



 SUBROUTINE posix_write( fid, buf, nb )

    IMPLICIT NONE

    INTEGER, INTENT(IN)    ::  fid
    INTEGER(KIND=C_INT)    ::  my_fid
    INTEGER , INTENT(IN)   ::  nb
    INTEGER(KIND=C_SIZE_T) ::  nr_byte
    INTEGER(KIND=C_SIZE_T) ::  retval

    TYPE(C_PTR)            ::  buf


    my_fid  = fid
    nr_byte = nb

    retval = C_WRITE( my_fid, buf, nr_byte )

    IF ( retval /= nr_byte )  THEN
       WRITE(6,*) 'Number of bytes to write does not match the number of requested bytes'
       CALL abort
    ENDIF

 END SUBROUTINE posix_write



 SUBROUTINE posix_write_char_array( fid, data )

    IMPLICIT NONE

    CHARACTER(LEN=*), DIMENSION(:)     ::  data

    CHARACTER(LEN=LEN(data)+1), TARGET ::  data_buf

    INTEGER, INTENT(IN)                ::  fid
    INTEGER                            ::  i
    INTEGER(KIND=C_INT)                ::  my_fid
    INTEGER(KIND=C_SIZE_T)             ::  name_len
    INTEGER(KIND=C_SIZE_T)             ::  retval

    TYPE(C_PTR)                        ::  ptr


    my_fid  = fid

    DO  i = 1, SIZE( data )
       data_buf = data(i) // CHAR( 0 )
       name_len = LEN( data(i) )
       ptr      = C_LOC( data_buf(1:1) )
       retval   = C_WRITE( my_fid, ptr, name_len )
    ENDDO

 END SUBROUTINE posix_write_char_array



 SUBROUTINE posix_close( fid )

    IMPLICIT NONE

    INTEGER, INTENT(IN) ::  fid
    INTEGER(KIND=C_INT) ::  my_fid
    INTEGER(KIND=C_INT) ::  retval


    my_fid = fid

    retval = C_CLOSE( my_fid )

 END SUBROUTINE posix_close


 END MODULE posix_interface