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source: palm/trunk/SOURCE/parin.f90 @ 4218

Last change on this file since 4218 was 4196, checked in by gronemeier, 5 years ago

Consider rotation of model domain for claculation of Coriolis force:

check_parameters: Overwrite rotation_angle from namelist by value from static driver;
coriolis: Consider rotation of model domain;
header: Write information about rotation angle;
modules: Added rotation_angle;
netcdf_interface_mod: replaced rotation angle from input-netCDF file by namelist parameter 'rotation_angle';
ocean_mod: Consider rotation of model domain for calculating the Stokes drift;
parin: added rotation_angle to initialization_parameters;

Property svn:keywords set to Id

File size: 35.4 KB

Line
1	!> @file parin.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: parin.f90 4196 2019-08-29 11:02:06Z knoop $
27	! added rotation_angle to initialization_parameters
28	!
29	! 4191 2019-08-27 15:45:07Z gronemeier
30	! bugfix: add recycling_method_for_thermodynamic_quantities to inipar namelist
31	!
32	! 4183 2019-08-23 07:33:16Z oliver.maas
33	! replaced recycle_absolute_quantities by recycling_method_for_thermodynamic_quantities
34	!
35	! 4182 2019-08-22 15:20:23Z scharf
36	! Corrected "Former revisions" section
37	!
38	! 4176 2019-08-20 14:10:41Z oliver.maas
39	! added recycle_absolute_quantities to initialization_parameters namelist
40	!
41	! 4173 2019-08-20 12:04:06Z gronemeier
42	! add vdi_internal_controls
43	!
44	! 4131 2019-08-02 11:06:18Z monakurppa
45	! Allocate hom and hom_sum to allow profile output for salsa variables.
46	!
47	! 4079 2019-07-09 18:04:41Z suehring
48	! +monotonic_limiter_z
49	!
50	! 4022 2019-06-12 11:52:39Z suehring
51	! Change default top boundary condition for pressure to Neumann in offline
52	! nesting case
53	!
54	! 4017 2019-06-06 12:16:46Z schwenkel
55	! Introduce alternative switch for debug output during timestepping
56	!
57	! 3885 2019-04-11 11:29:34Z kanani
58	! Changes related to global restructuring of location messages and introduction
59	! of additional debug messages
60	!
61	! 3806 2019-03-21 12:45:50Z raasch
62	! additional check for lateral boundary conditions added
63	!
64	! 3747 2019-02-16 15:15:23Z gronemeier
65	! removed setting of parameter region
66	!
67	! 3746 2019-02-16 12:41:27Z gronemeier
68	! Removed most_method
69	!
70	! 3649 2019-01-02 16:52:21Z suehring
71	! Delete debug-print statements
72	!
73	! Revision 1.1 1997/07/24 11:22:50 raasch
74	! Initial revision
75	!
76	!
77	! Description:
78	! ------------
79	!> This subroutine reads variables controling the run from the NAMELIST files
80	!>
81	!> @todo: Revise max_pr_cs (profiles for chemistry)
82	!------------------------------------------------------------------------------!
83	SUBROUTINE parin
84
85
86	USE arrays_3d, &
87	ONLY: pt_init, q_init, ref_state, s_init, sa_init, &
88	ug, u_init, v_init, vg
89
90	USE chem_modules
91
92	USE control_parameters
93
94	USE cpulog, &
95	ONLY: cpu_log_barrierwait
96
97	USE date_and_time_mod, &
98	ONLY: date_init, day_of_year_init, time_utc_init
99
100	USE grid_variables, &
101	ONLY: dx, dy
102
103	USE indices, &
104	ONLY: nx, ny, nz
105
106	USE kinds
107
108	USE model_1d_mod, &
109	ONLY: damp_level_1d, dt_pr_1d, dt_run_control_1d, end_time_1d
110
111	USE module_interface, &
112	ONLY: module_interface_parin
113
114	USE netcdf_interface, &
115	ONLY: netcdf_data_format, netcdf_deflate, netcdf_precision
116
117	USE pegrid
118
119	USE pmc_interface, &
120	ONLY: nested_run, nesting_mode
121
122	USE profil_parameter, &
123	ONLY: cross_profiles, profile_columns, profile_rows
124
125	USE progress_bar, &
126	ONLY : progress_bar_disabled
127
128	USE read_restart_data_mod, &
129	ONLY: rrd_global
130
131	USE statistics, &
132	ONLY: hom, hom_sum, pr_palm, statistic_regions
133
134	USE turbulence_closure_mod, &
135	ONLY: rans_const_c, rans_const_sigma
136
137	USE vertical_nesting_mod, &
138	ONLY: vnest_start_time
139
140
141	IMPLICIT NONE
142
143	CHARACTER (LEN=80) :: line !< dummy string that contains the current line of the parameter file
144
145	INTEGER(iwp) :: global_id !< process id with respect to MPI_COMM_WORLD
146	INTEGER(iwp) :: global_procs !< # of procs with respect to MPI_COMM_WORLD
147	INTEGER(iwp) :: i !<
148	INTEGER(iwp) :: ioerr !< error flag for open/read/write
149
150	NAMELIST /inipar/ alpha_surface, approximation, bc_e_b, &
151	bc_lr, bc_ns, bc_p_b, bc_p_t, bc_pt_b, bc_pt_t, bc_q_b, &
152	bc_q_t,bc_s_b, bc_s_t, bc_uv_b, bc_uv_t, &
153	building_height, building_length_x, &
154	building_length_y, building_wall_left, building_wall_south, &
155	calc_soil_moisture_during_spinup, &
156	call_psolver_at_all_substeps, &
157	canyon_height, &
158	canyon_width_x, canyon_width_y, canyon_wall_left, &
159	canyon_wall_south, cfl_factor, cloud_droplets, &
160	collective_wait, complex_terrain, &
161	conserve_volume_flow, &
162	conserve_volume_flow_mode, constant_flux_layer, &
163	coupling_start_time, &
164	cycle_mg, damp_level_1d, &
165	data_output_during_spinup, &
166	date_init, &
167	day_of_year_init, &
168	dissipation_1d, &
169	dp_external, dp_level_b, dp_smooth, dpdxy, &
170	dt, dt_pr_1d, dt_run_control_1d, dt_spinup, dx, dy, dz, dz_max, &
171	dz_stretch_factor, dz_stretch_level, dz_stretch_level_start, &
172	dz_stretch_level_end, end_time_1d, ensemble_member_nr, e_init, &
173	e_min, fft_method, flux_input_mode, flux_output_mode, &
174	galilei_transformation, humidity, &
175	inflow_damping_height, inflow_damping_width, &
176	inflow_disturbance_begin, inflow_disturbance_end, &
177	initializing_actions, km_constant, &
178	large_scale_forcing, large_scale_subsidence, latitude, &
179	longitude, &
180	loop_optimization, lsf_exception, masking_method, mg_cycles, &
181	mg_switch_to_pe0_level, mixing_length_1d, momentum_advec, &
182	monotonic_limiter_z, &
183	netcdf_precision, neutral, ngsrb, &
184	nsor, nsor_ini, nudging, nx, ny, nz, ocean_mode, omega, &
185	omega_sor, outflow_source_plane, passive_scalar, &
186	prandtl_number, psolver, pt_damping_factor, &
187	pt_damping_width, pt_reference, pt_surface, &
188	pt_surface_initial_change, pt_vertical_gradient, &
189	pt_vertical_gradient_level, q_surface, q_surface_initial_change, &
190	q_vertical_gradient, q_vertical_gradient_level, &
191	random_generator, random_heatflux, rans_const_c, rans_const_sigma,&
192	rayleigh_damping_factor, rayleigh_damping_height, &
193	recycling_method_for_thermodynamic_quantities, &
194	recycling_width, recycling_yshift, &
195	reference_state, residual_limit, &
196	rotation_angle, &
197	roughness_length, &
198	scalar_advec, &
199	scalar_rayleigh_damping, &
200	spinup_time, spinup_pt_amplitude, spinup_pt_mean, &
201	statistic_regions, subs_vertical_gradient, &
202	subs_vertical_gradient_level, surface_heatflux, surface_pressure, &
203	surface_scalarflux, surface_waterflux, &
204	s_surface, s_surface_initial_change, s_vertical_gradient, &
205	s_vertical_gradient_level, time_utc_init, timestep_scheme, &
206	topography, topography_grid_convention, top_heatflux, &
207	top_momentumflux_u, top_momentumflux_v, &
208	top_scalarflux, transpose_compute_overlap, &
209	tunnel_height, tunnel_length, tunnel_width_x, tunnel_width_y, &
210	tunnel_wall_depth, turbulence_closure, &
211	turbulent_inflow, turbulent_outflow, &
212	use_subsidence_tendencies, ug_surface, ug_vertical_gradient, &
213	use_free_convection_scaling, &
214	ug_vertical_gradient_level, use_surface_fluxes, use_cmax, &
215	use_top_fluxes, use_ug_for_galilei_tr, use_upstream_for_tke, &
216	uv_heights, u_bulk, u_profile, vdi_checks, vg_surface, &
217	vg_vertical_gradient, &
218	vg_vertical_gradient_level, v_bulk, v_profile,&
219	wall_adjustment, wall_heatflux, wall_humidityflux, &
220	wall_scalarflux, y_shift, zeta_max, zeta_min, &
221	z0h_factor
222
223	NAMELIST /initialization_parameters/ alpha_surface, &
224	approximation, bc_e_b, &
225	bc_lr, bc_ns, bc_p_b, bc_p_t, bc_pt_b, bc_pt_t, bc_q_b, &
226	bc_q_t,bc_s_b, bc_s_t, bc_uv_b, bc_uv_t, &
227	building_height, building_length_x, &
228	building_length_y, building_wall_left, building_wall_south, &
229	calc_soil_moisture_during_spinup, &
230	call_psolver_at_all_substeps, &
231	canyon_height, &
232	canyon_width_x, canyon_width_y, canyon_wall_left, &
233	canyon_wall_south, cfl_factor, cloud_droplets, &
234	collective_wait, complex_terrain, &
235	conserve_volume_flow, &
236	conserve_volume_flow_mode, constant_flux_layer, &
237	coupling_start_time, &
238	cycle_mg, damp_level_1d, &
239	data_output_during_spinup, &
240	date_init, &
241	day_of_year_init, &
242	dissipation_1d, &
243	dp_external, dp_level_b, dp_smooth, dpdxy, &
244	dt, dt_pr_1d, dt_run_control_1d, dt_spinup, dx, dy, dz, dz_max, &
245	dz_stretch_factor, dz_stretch_level, dz_stretch_level_start, &
246	dz_stretch_level_end, end_time_1d, ensemble_member_nr, e_init, &
247	e_min, fft_method, flux_input_mode, flux_output_mode, &
248	galilei_transformation, humidity, &
249	inflow_damping_height, inflow_damping_width, &
250	inflow_disturbance_begin, inflow_disturbance_end, &
251	initializing_actions, km_constant, &
252	large_scale_forcing, large_scale_subsidence, latitude, &
253	longitude, &
254	loop_optimization, lsf_exception, masking_method, mg_cycles, &
255	mg_switch_to_pe0_level, mixing_length_1d, momentum_advec, &
256	monotonic_limiter_z, &
257	netcdf_precision, neutral, ngsrb, &
258	nsor, nsor_ini, nudging, nx, ny, nz, ocean_mode, omega, &
259	omega_sor, outflow_source_plane, passive_scalar, &
260	prandtl_number, psolver, pt_damping_factor, &
261	pt_damping_width, pt_reference, pt_surface, &
262	pt_surface_initial_change, pt_vertical_gradient, &
263	pt_vertical_gradient_level, q_surface, q_surface_initial_change, &
264	q_vertical_gradient, q_vertical_gradient_level, &
265	random_generator, random_heatflux, rans_const_c, rans_const_sigma,&
266	rayleigh_damping_factor, rayleigh_damping_height, &
267	recycling_method_for_thermodynamic_quantities, &
268	recycling_width, recycling_yshift, &
269	reference_state, residual_limit, &
270	rotation_angle, &
271	roughness_length, scalar_advec, &
272	scalar_rayleigh_damping, &
273	spinup_time, spinup_pt_amplitude, spinup_pt_mean, &
274	statistic_regions, subs_vertical_gradient, &
275	subs_vertical_gradient_level, surface_heatflux, surface_pressure, &
276	surface_scalarflux, surface_waterflux, &
277	s_surface, s_surface_initial_change, s_vertical_gradient, &
278	s_vertical_gradient_level, time_utc_init, timestep_scheme, &
279	topography, topography_grid_convention, top_heatflux, &
280	top_momentumflux_u, top_momentumflux_v, &
281	top_scalarflux, transpose_compute_overlap, &
282	tunnel_height, tunnel_length, tunnel_width_x, tunnel_width_y, &
283	tunnel_wall_depth, turbulence_closure, &
284	turbulent_inflow, turbulent_outflow, &
285	use_subsidence_tendencies, ug_surface, ug_vertical_gradient, &
286	ug_vertical_gradient_level, use_surface_fluxes, use_cmax, &
287	use_top_fluxes, use_ug_for_galilei_tr, use_upstream_for_tke, &
288	use_free_convection_scaling, &
289	uv_heights, u_bulk, u_profile, vdi_checks, &
290	vg_surface, vg_vertical_gradient, &
291	vg_vertical_gradient_level, v_bulk, v_profile, &
292	wall_adjustment, wall_heatflux, wall_humidityflux, &
293	wall_scalarflux, y_shift, zeta_max, zeta_min, z0h_factor
294
295	NAMELIST /d3par/ averaging_interval, averaging_interval_pr, &
296	cpu_log_barrierwait, create_disturbances, &
297	cross_profiles, data_output, data_output_masks, &
298	data_output_pr, data_output_2d_on_each_pe, &
299	debug_output, &
300	debug_output_timestep, &
301	disturbance_amplitude, &
302	disturbance_energy_limit, disturbance_level_b, &
303	disturbance_level_t, do2d_at_begin, do3d_at_begin, &
304	dt, dt_averaging_input, dt_averaging_input_pr, &
305	dt_coupling, dt_data_output, dt_data_output_av, dt_disturb, &
306	dt_domask, dt_dopr, dt_dopr_listing, dt_dots, dt_do2d_xy, &
307	dt_do2d_xz, dt_do2d_yz, dt_do3d, dt_max, dt_restart, &
308	dt_run_control,end_time, force_print_header, mask_k_over_surface, &
309	mask_scale_x, &
310	mask_scale_y, mask_scale_z, mask_x, mask_y, mask_z, mask_x_loop, &
311	mask_y_loop, mask_z_loop, netcdf_data_format, netcdf_deflate, &
312	normalizing_region, npex, npey, nz_do3d, &
313	profile_columns, profile_rows, &
314	restart_time, section_xy, section_xz, section_yz, &
315	skip_time_data_output, skip_time_data_output_av, skip_time_dopr, &
316	skip_time_do2d_xy, skip_time_do2d_xz, skip_time_do2d_yz, &
317	skip_time_do3d, skip_time_domask, synchronous_exchange, &
318	termination_time_needed, vnest_start_time
319
320	NAMELIST /runtime_parameters/ averaging_interval, averaging_interval_pr, &
321	cpu_log_barrierwait, create_disturbances, &
322	cross_profiles, data_output, data_output_masks, &
323	data_output_pr, data_output_2d_on_each_pe, &
324	debug_output, &
325	debug_output_timestep, &
326	disturbance_amplitude, &
327	disturbance_energy_limit, disturbance_level_b, &
328	disturbance_level_t, do2d_at_begin, do3d_at_begin, &
329	dt, dt_averaging_input, dt_averaging_input_pr, &
330	dt_coupling, dt_data_output, dt_data_output_av, dt_disturb, &
331	dt_domask, dt_dopr, dt_dopr_listing, dt_dots, dt_do2d_xy, &
332	dt_do2d_xz, dt_do2d_yz, dt_do3d, dt_max, dt_restart, &
333	dt_run_control,end_time, force_print_header, mask_k_over_surface, &
334	mask_scale_x, &
335	mask_scale_y, mask_scale_z, mask_x, mask_y, mask_z, mask_x_loop, &
336	mask_y_loop, mask_z_loop, netcdf_data_format, netcdf_deflate, &
337	normalizing_region, npex, npey, nz_do3d, &
338	profile_columns, profile_rows, &
339	restart_time, section_xy, section_xz, section_yz, &
340	skip_time_data_output, skip_time_data_output_av, skip_time_dopr, &
341	skip_time_do2d_xy, skip_time_do2d_xz, skip_time_do2d_yz, &
342	skip_time_do3d, skip_time_domask, synchronous_exchange, &
343	termination_time_needed, vnest_start_time
344
345	NAMELIST /envpar/ progress_bar_disabled, host, &
346	maximum_cpu_time_allowed, maximum_parallel_io_streams, &
347	read_svf, revision, run_identifier, tasks_per_node, &
348	write_binary, write_svf
349
350	!
351	!-- First read values of environment variables (this NAMELIST file is
352	!-- generated by palmrun)
353	CALL location_message( 'reading environment parameters from ENVPAR', 'start' )
354
355	OPEN ( 90, FILE='ENVPAR', STATUS='OLD', FORM='FORMATTED', IOSTAT=ioerr )
356
357	IF ( ioerr /= 0 ) THEN
358	message_string = 'local file ENVPAR not found' // &
359	'&some variables for steering may not be properly set'
360	CALL message( 'parin', 'PA0276', 0, 1, 0, 6, 0 )
361	ELSE
362	READ ( 90, envpar, IOSTAT=ioerr )
363	IF ( ioerr < 0 ) THEN
364	message_string = 'no envpar-NAMELIST found in local file ' // &
365	'ENVPAR& or some variables for steering may ' // &
366	'not be properly set'
367	CALL message( 'parin', 'PA0278', 0, 1, 0, 6, 0 )
368	ELSEIF ( ioerr > 0 ) THEN
369	message_string = 'errors in local file ENVPAR' // &
370	'&some variables for steering may not be properly set'
371	CALL message( 'parin', 'PA0277', 0, 1, 0, 6, 0 )
372	ENDIF
373	CLOSE ( 90 )
374	ENDIF
375
376	CALL location_message( 'reading environment parameters from ENVPAR', 'finished' )
377	!
378	!-- Calculate the number of groups into which parallel I/O is split.
379	!-- The default for files which are opened by all PEs (or where each
380	!-- PE opens his own independent file) is, that all PEs are doing input/output
381	!-- in parallel at the same time. This might cause performance or even more
382	!-- severe problems depending on the configuration of the underlying file
383	!-- system.
384	!-- Calculation of the number of blocks and the I/O group must be based on all
385	!-- PEs involved in this run. Since myid and numprocs are related to the
386	!-- comm2d communicator, which gives only a subset of all PEs in case of
387	!-- nested runs, that information must be inquired again from the global
388	!-- communicator.
389	!-- First, set the default:
390	#if defined( __parallel )
391	CALL MPI_COMM_RANK( MPI_COMM_WORLD, global_id, ierr )
392	CALL MPI_COMM_SIZE( MPI_COMM_WORLD, global_procs, ierr )
393	#else
394	global_id = 0
395	global_procs = 1
396	#endif
397	IF ( maximum_parallel_io_streams == -1 .OR. &
398	maximum_parallel_io_streams > global_procs ) THEN
399	maximum_parallel_io_streams = global_procs
400	ENDIF
401	!
402	!-- Now calculate the number of io_blocks and the io_group to which the
403	!-- respective PE belongs. I/O of the groups is done in serial, but in parallel
404	!-- for all PEs belonging to the same group.
405	io_blocks = global_procs / maximum_parallel_io_streams
406	io_group = MOD( global_id+1, io_blocks )
407
408	CALL location_message( 'reading NAMELIST parameters from PARIN', 'start' )
409	!
410	!-- Data is read in parallel by groups of PEs
411	DO i = 0, io_blocks-1
412	IF ( i == io_group ) THEN
413
414	!
415	!-- Open the NAMELIST-file which is send with this job
416	CALL check_open( 11 )
417
418	!
419	!-- Read the control parameters for initialization.
420	!-- The namelist "inipar" must be provided in the NAMELIST-file.
421	READ ( 11, initialization_parameters, ERR=10, END=11 )
422	GOTO 14
423
424	10 BACKSPACE( 11 )
425	READ( 11 , '(A)') line
426	CALL parin_fail_message( 'initialization_parameters', line )
427
428	11 REWIND ( 11 )
429	READ ( 11, inipar, ERR=12, END=13 )
430
431	message_string = 'namelist inipar is deprecated and will be ' // &
432	'removed in near future. & Please use namelist ' // &
433	'initialization_parameters instead'
434	CALL message( 'parin', 'PA0017', 0, 1, 0, 6, 0 )
435
436	GOTO 14
437
438	12 BACKSPACE( 11 )
439	READ( 11 , '(A)') line
440	CALL parin_fail_message( 'inipar', line )
441
442	13 message_string = 'no initialization_parameters-namelist found'
443	CALL message( 'parin', 'PA0272', 1, 2, 0, 6, 0 )
444
445	!
446	!-- Try to read runtime parameters given by the user for this run
447	!-- (namelist "runtime_parameters"). The namelist "runtime_parmeters"
448	!-- can be omitted. In that case default values are used for the
449	!-- parameters.
450	14 line = ' '
451
452	REWIND ( 11 )
453	line = ' '
454	DO WHILE ( INDEX( line, '&runtime_parameters' ) == 0 )
455	READ ( 11, '(A)', END=16 ) line
456	ENDDO
457	BACKSPACE ( 11 )
458
459	!
460	!-- Read namelist
461	READ ( 11, runtime_parameters, ERR = 15 )
462	GOTO 18
463
464	15 BACKSPACE( 11 )
465	READ( 11 , '(A)') line
466	CALL parin_fail_message( 'runtime_parameters', line )
467
468	16 REWIND ( 11 )
469	line = ' '
470	DO WHILE ( INDEX( line, '&d3par' ) == 0 )
471	READ ( 11, '(A)', END=18 ) line
472	ENDDO
473	BACKSPACE ( 11 )
474
475	!
476	!-- Read namelist
477	READ ( 11, d3par, ERR = 17, END = 18 )
478
479	message_string = 'namelist d3par is deprecated and will be ' // &
480	'removed in near future. &Please use namelist ' // &
481	'runtime_parameters instead'
482	CALL message( 'parin', 'PA0487', 0, 1, 0, 6, 0 )
483
484	GOTO 18
485
486	17 BACKSPACE( 11 )
487	READ( 11 , '(A)') line
488	CALL parin_fail_message( 'd3par', line )
489
490	18 CONTINUE
491
492	!
493	!-- Check for module namelists and read them
494	CALL module_interface_parin
495
496	!
497	!-- If required, read control parameters from restart file (produced by
498	!-- a prior run). All PEs are reading from file created by PE0 (see
499	!-- check_open)
500	IF ( TRIM( initializing_actions ) == 'read_restart_data' ) THEN
501
502	CALL rrd_global
503	!
504	!-- Increment the run count
505	runnr = runnr + 1
506	!
507	!-- In case of a restart run, the number of user-defined profiles on
508	!-- the restart file (already stored in max_pr_user) has to match the
509	!-- one given for the current run. max_pr_user_tmp is calculated in
510	!-- user_parin and max_pr_user is read in via rrd_global.
511	IF ( max_pr_user /= max_pr_user_tmp ) THEN
512	WRITE( message_string, * ) 'the number of user-defined ', &
513	'profiles given in data_output_pr (', max_pr_user_tmp, &
514	') does not match the one ', &
515	'found in the restart file (', max_pr_user, ')'
516	CALL message( 'user_parin', 'UI0009', 1, 2, 0, 6, 0 )
517	ENDIF
518	ELSE
519	max_pr_user = max_pr_user_tmp
520	ENDIF
521	!
522	!-- Activate spinup
523	IF ( land_surface .OR. urban_surface ) THEN
524	IF ( spinup_time > 0.0_wp ) THEN
525	coupling_start_time = spinup_time
526	time_since_reference_point = simulated_time - coupling_start_time
527	IF ( spinup_pt_mean == 9999999.9_wp ) THEN
528	spinup_pt_mean = pt_surface
529	ENDIF
530	end_time = end_time + spinup_time
531	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
532	spinup = .TRUE.
533	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' &
534	.AND. time_since_reference_point > 0.0_wp ) THEN
535	data_output_during_spinup = .FALSE. !< required for correct ntdim calculation
536	!< in check_parameters for restart run
537	ENDIF
538	ENDIF
539	ENDIF
540
541	!
542	!-- In case of nested runs, explicitly set nesting boundary conditions.
543	!-- This will overwrite the user settings and basic defaults.
544	!-- bc_lr and bc_ns always need to be cyclic for vertical nesting.
545	IF ( nested_run ) THEN
546	IF ( nesting_mode == 'vertical' ) THEN
547	IF (bc_lr /= 'cyclic' .OR. bc_ns /= 'cyclic' ) THEN
548	WRITE ( message_string, *) 'bc_lr and bc_ns were set to ,', &
549	'cyclic for vertical nesting'
550	CALL message( 'parin', 'PA0428', 0, 0, 0, 6, 0 )
551	bc_lr = 'cyclic'
552	bc_ns = 'cyclic'
553	ENDIF
554	IF ( child_domain ) THEN
555	bc_uv_t = 'nested'
556	bc_pt_t = 'nested'
557	bc_q_t = 'nested'
558	bc_s_t = 'nested'
559	bc_cs_t = 'nested'
560	bc_p_t = 'neumann'
561	ENDIF
562	!
563	!-- For other nesting modes only set boundary conditions for
564	!-- nested domains.
565	ELSE
566	IF ( child_domain ) THEN
567	bc_lr = 'nested'
568	bc_ns = 'nested'
569	bc_uv_t = 'nested'
570	bc_pt_t = 'nested'
571	bc_q_t = 'nested'
572	bc_s_t = 'nested'
573	bc_cs_t = 'nested'
574	bc_p_t = 'neumann'
575	ENDIF
576	ENDIF
577	ENDIF
578	!
579	!-- Set boundary conditions also in case the model is offline-nested in
580	!-- larger-scale models.
581	IF ( nesting_offline ) THEN
582	bc_lr = 'nesting_offline'
583	bc_ns = 'nesting_offline'
584	bc_uv_t = 'nesting_offline'
585	bc_pt_t = 'nesting_offline'
586	bc_q_t = 'nesting_offline'
587	! bc_s_t = 'nesting_offline' ! scalar boundary condition is not clear yet
588	! bc_cs_t = 'nesting_offline' ! same for chemical species
589	bc_p_t = 'neumann'
590	ENDIF
591
592	!
593	!-- In case of nested runs, make sure that initializing_actions =
594	!-- 'set_constant_profiles' even though the constant-profiles
595	!-- initializations for the prognostic variables will be overwritten
596	!-- by pmci_child_initialize and pmci_parent_initialize. This is,
597	!-- however, important e.g. to make sure that diagnostic variables
598	!-- are set properly. An exception is made in case of restart runs and
599	!-- if user decides to do everything by its own.
600	IF ( child_domain .AND. .NOT. ( &
601	TRIM( initializing_actions ) == 'read_restart_data' .OR. &
602	TRIM( initializing_actions ) == 'set_constant_profiles' .OR. &
603	TRIM( initializing_actions ) == 'by_user' ) ) THEN
604	message_string = 'initializing_actions = ' // &
605	TRIM( initializing_actions ) // ' has been ' // &
606	'changed to set_constant_profiles in child ' // &
607	'domain.'
608	CALL message( 'parin', 'PA0492', 0, 0, 0, 6, 0 )
609
610	initializing_actions = 'set_constant_profiles'
611	ENDIF
612	!
613	!-- Check validity of lateral boundary conditions. This has to be done
614	!-- here because they are already used in init_pegrid and init_grid and
615	!-- therefore cannot be check in check_parameters
616	IF ( bc_lr /= 'cyclic' .AND. bc_lr /= 'dirichlet/radiation' .AND. &
617	bc_lr /= 'radiation/dirichlet' .AND. bc_lr /= 'nested' .AND. &
618	bc_lr /= 'nesting_offline' ) THEN
619	message_string = 'unknown boundary condition: bc_lr = "' // &
620	TRIM( bc_lr ) // '"'
621	CALL message( 'parin', 'PA0049', 1, 2, 0, 6, 0 )
622	ENDIF
623	IF ( bc_ns /= 'cyclic' .AND. bc_ns /= 'dirichlet/radiation' .AND. &
624	bc_ns /= 'radiation/dirichlet' .AND. bc_ns /= 'nested' .AND. &
625	bc_ns /= 'nesting_offline' ) THEN
626	message_string = 'unknown boundary condition: bc_ns = "' // &
627	TRIM( bc_ns ) // '"'
628	CALL message( 'parin', 'PA0050', 1, 2, 0, 6, 0 )
629	ENDIF
630	!
631	!-- Set internal variables used for speed optimization in if clauses
632	IF ( bc_lr /= 'cyclic' ) bc_lr_cyc = .FALSE.
633	IF ( bc_lr == 'dirichlet/radiation' ) bc_lr_dirrad = .TRUE.
634	IF ( bc_lr == 'radiation/dirichlet' ) bc_lr_raddir = .TRUE.
635	IF ( bc_ns /= 'cyclic' ) bc_ns_cyc = .FALSE.
636	IF ( bc_ns == 'dirichlet/radiation' ) bc_ns_dirrad = .TRUE.
637	IF ( bc_ns == 'radiation/dirichlet' ) bc_ns_raddir = .TRUE.
638	!
639	!-- Radiation-Dirichlet conditions are allowed along one of the horizontal directions only.
640	!-- In general, such conditions along x and y may work, but require a) some code changes
641	!-- (e.g. concerning allocation of c_u, c_v ... arrays), and b) a careful model setup by the
642	!-- user, in order to guarantee that there is a clearly defined outflow at two sides.
643	!-- Otherwise, the radiation condition may produce wrong results.
644	IF ( ( bc_lr_dirrad .OR. bc_lr_raddir ) .AND. ( bc_ns_dirrad .OR. bc_ns_raddir ) ) THEN
645	message_string = 'bc_lr = "' // TRIM( bc_lr ) // '" and bc_ns = "' // &
646	TRIM( bc_ns ) // '" are not allowed to be set at the same time'
647	CALL message( 'parin', 'PA0589', 1, 2, 0, 6, 0 )
648	ENDIF
649	!
650	!-- Check in case of initial run, if the grid point numbers are well
651	!-- defined and allocate some arrays which are already needed in
652	!-- init_pegrid or check_parameters. During restart jobs, these arrays
653	!-- will be allocated in rrd_global. All other arrays are allocated
654	!-- in init_3d_model.
655	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
656
657	IF ( nx <= 0 ) THEN
658	WRITE( message_string, * ) 'no value or wrong value given', &
659	' for nx: nx=', nx
660	CALL message( 'parin', 'PA0273', 1, 2, 0, 6, 0 )
661	ENDIF
662	IF ( ny <= 0 ) THEN
663	WRITE( message_string, * ) 'no value or wrong value given', &
664	' for ny: ny=', ny
665	CALL message( 'parin', 'PA0274', 1, 2, 0, 6, 0 )
666	ENDIF
667	IF ( nz <= 0 ) THEN
668	WRITE( message_string, * ) 'no value or wrong value given', &
669	' for nz: nz=', nz
670	CALL message( 'parin', 'PA0275', 1, 2, 0, 6, 0 )
671	ENDIF
672
673	!
674	!-- As a side condition, routine flow_statistics require at least 14
675	!-- vertical grid levels (they are used to store time-series data)
676	!> @todo Remove this restriction
677	IF ( nz < 14 ) THEN
678	WRITE( message_string, * ) 'nz >= 14 is required'
679	CALL message( 'parin', 'PA0362', 1, 2, 0, 6, 0 )
680	ENDIF
681
682	!
683	!-- ATTENTION: in case of changes to the following statement please
684	!-- also check the allocate statement in routine rrd_global
685	ALLOCATE( pt_init(0:nz+1), q_init(0:nz+1), s_init(0:nz+1), &
686	ref_state(0:nz+1), sa_init(0:nz+1), ug(0:nz+1), &
687	u_init(0:nz+1), v_init(0:nz+1), vg(0:nz+1), &
688	hom(0:nz+1,2,pr_palm+max_pr_user+max_pr_cs+max_pr_salsa,0:statistic_regions), &
689	hom_sum(0:nz+1,pr_palm+max_pr_user+max_pr_cs+max_pr_salsa,0:statistic_regions) )
690
691	hom = 0.0_wp
692
693	ENDIF
694
695	!
696	!-- NAMELIST-file is not needed anymore
697	CALL close_file( 11 )
698
699	ENDIF
700	#if defined( __parallel )
701	CALL MPI_BARRIER( MPI_COMM_WORLD, ierr )
702	#endif
703	ENDDO
704
705	CALL location_message( 'reading NAMELIST parameters from PARIN', 'finished' )
706
707	END SUBROUTINE parin

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