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source: palm/trunk/SOURCE/init_3d_model.f90 @ 2300

Last change on this file since 2300 was 2292, checked in by schwenkel, 7 years ago

implementation of new bulk microphysics scheme

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/palm/branches/forwind/SOURCE/init_3d_model.f90 1564-1913

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[1682]	1	!> @file init_3d_model.f90
[2000]	2	!------------------------------------------------------------------------------!
[1036]	3	! This file is part of PALM.
	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2101]	17	! Copyright 1997-2017 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[732]	21	! ------------------
[2233]	22	!
	23	!
	24	! Former revisions:
	25	! -----------------
	26	! $Id: init_3d_model.f90 2292 2017-06-20 09:51:42Z raasch $
[2292]	27	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	28	! includes two more prognostic equations for cloud drop concentration (nc)
	29	! and cloud water content (qc).
	30	!
	31	! 2277 2017-06-12 10:47:51Z kanani
[2277]	32	! Removed unused variable sums_up_fraction_l
	33	!
	34	! 2270 2017-06-09 12:18:47Z maronga
[2270]	35	! dots_num must be increased when LSM and/or radiation is used
	36	!
	37	! 2259 2017-06-08 09:09:11Z gronemeier
[2259]	38	! Implemented synthetic turbulence generator
	39	!
	40	! 2252 2017-06-07 09:35:37Z knoop
[2252]	41	! rho_air now depending on surface_pressure even in Boussinesq mode
	42	!
	43	! 2233 2017-05-30 18:08:54Z suehring
[2233]	44	!
	45	! 2232 2017-05-30 17:47:52Z suehring
[2232]	46	! Adjustments to new topography and surface concept:
	47	! - Modify passed parameters for disturb_field
	48	! - Topography representation via flags
	49	! - Remove unused arrays.
	50	! - Move initialization of surface-related quantities to surface_mod
[1961]	51	!
[2173]	52	! 2172 2017-03-08 15:55:25Z knoop
	53	! Bugfix: moved parallel random generator initialization into its module
	54	!
[2119]	55	! 2118 2017-01-17 16:38:49Z raasch
	56	! OpenACC directives removed
	57	!
[2038]	58	! 2037 2016-10-26 11:15:40Z knoop
	59	! Anelastic approximation implemented
	60	!
[2032]	61	! 2031 2016-10-21 15:11:58Z knoop
	62	! renamed variable rho to rho_ocean
	63	!
[2012]	64	! 2011 2016-09-19 17:29:57Z kanani
	65	! Flag urban_surface is now defined in module control_parameters.
	66	!
[2008]	67	! 2007 2016-08-24 15:47:17Z kanani
	68	! Added support for urban surface model,
	69	! adjusted location_message in case of plant_canopy
	70	!
[2001]	71	! 2000 2016-08-20 18:09:15Z knoop
	72	! Forced header and separation lines into 80 columns
	73	!
[1993]	74	! 1992 2016-08-12 15:14:59Z suehring
	75	! Initializaton of scalarflux at model top
	76	! Bugfixes in initialization of surface and top salinity flux, top scalar and
	77	! humidity fluxes
	78	!
[1961]	79	! 1960 2016-07-12 16:34:24Z suehring
[1960]	80	! Separate humidity and passive scalar
	81	! Increase dimension for mean_inflow_profiles
	82	! Remove inadvertent write-statement
	83	! Bugfix, large-scale forcing is still not implemented for passive scalars
[1919]	84	!
[1958]	85	! 1957 2016-07-07 10:43:48Z suehring
	86	! flight module added
	87	!
[1921]	88	! 1920 2016-05-30 10:50:15Z suehring
	89	! Initialize us with very small number to avoid segmentation fault during
	90	! calculation of Obukhov length
	91	!
[1919]	92	! 1918 2016-05-27 14:35:57Z raasch
	93	! intermediate_timestep_count is set 0 instead 1 for first call of pres,
	94	! bugfix: initialization of local sum arrays are moved to the beginning of the
	95	! routine because otherwise results from pres are overwritten
	96	!
[1917]	97	! 1914 2016-05-26 14:44:07Z witha
	98	! Added initialization of the wind turbine model
	99	!
[1879]	100	! 1878 2016-04-19 12:30:36Z hellstea
	101	! The zeroth element of weight_pres removed as unnecessary
	102	!
[1851]	103	! 1849 2016-04-08 11:33:18Z hoffmann
[1849]	104	! Adapted for modularization of microphysics.
	105	! precipitation_amount, precipitation_rate, prr moved to arrays_3d.
[1852]	106	! Initialization of nc_1d, nr_1d, pt_1d, qc_1d, qr_1d, q_1d moved to
[1849]	107	! microphysics_init.
	108	!
[1846]	109	! 1845 2016-04-08 08:29:13Z raasch
	110	! nzb_2d replaced by nzb_u\|v_inner
[1914]	111	!
[1834]	112	! 1833 2016-04-07 14:23:03Z raasch
	113	! initialization of spectra quantities moved to spectra_mod
	114	!
[1832]	115	! 1831 2016-04-07 13:15:51Z hoffmann
	116	! turbulence renamed collision_turbulence
	117	!
[1827]	118	! 1826 2016-04-07 12:01:39Z maronga
	119	! Renamed radiation calls.
	120	! Renamed canopy model calls.
	121	!
[1823]	122	! 1822 2016-04-07 07:49:42Z hoffmann
	123	! icloud_scheme replaced by microphysics_*
[1914]	124	!
[1818]	125	! 1817 2016-04-06 15:44:20Z maronga
	126	! Renamed lsm calls.
	127	!
[1816]	128	! 1815 2016-04-06 13:49:59Z raasch
	129	! zero-settings for velocities inside topography re-activated (was deactivated
	130	! in r1762)
	131	!
[1789]	132	! 1788 2016-03-10 11:01:04Z maronga
	133	! Added z0q.
	134	! Syntax layout improved.
	135	!
[1784]	136	! 1783 2016-03-06 18:36:17Z raasch
	137	! netcdf module name changed + related changes
	138	!
[1765]	139	! 1764 2016-02-28 12:45:19Z raasch
	140	! bugfix: increase size of volume_flow_area_l and volume_flow_initial_l by 1
	141	!
[1763]	142	! 1762 2016-02-25 12:31:13Z hellstea
	143	! Introduction of nested domain feature
	144	!
[1739]	145	! 1738 2015-12-18 13:56:05Z raasch
	146	! calculate mean surface level height for each statistic region
	147	!
[1735]	148	! 1734 2015-12-02 12:17:12Z raasch
	149	! no initial disturbances in case that the disturbance energy limit has been
	150	! set zero
	151	!
[1708]	152	! 1707 2015-11-02 15:24:52Z maronga
	153	! Bugfix: transfer of Richardson number from 1D model to Obukhov length caused
	154	! devision by zero in neutral stratification
	155	!
[1692]	156	! 1691 2015-10-26 16:17:44Z maronga
	157	! Call to init_surface_layer added. rif is replaced by ol and zeta.
	158	!
[1683]	159	! 1682 2015-10-07 23:56:08Z knoop
	160	! Code annotations made doxygen readable
	161	!
[1616]	162	! 1615 2015-07-08 18:49:19Z suehring
	163	! Enable turbulent inflow for passive_scalar and humidity
	164	!
[1586]	165	! 1585 2015-04-30 07:05:52Z maronga
	166	! Initialization of radiation code is now done after LSM initializtion
	167	!
[1576]	168	! 1575 2015-03-27 09:56:27Z raasch
	169	! adjustments for psolver-queries
	170	!
[1552]	171	! 1551 2015-03-03 14:18:16Z maronga
[1817]	172	! Allocation of land surface arrays is now done in the subroutine lsm_init_arrays,
[1552]	173	! which is part of land_surface_model.
	174	!
[1508]	175	! 1507 2014-12-10 12:14:18Z suehring
	176	! Bugfix: set horizontal velocity components to zero inside topography
	177	!
[1497]	178	! 1496 2014-12-02 17:25:50Z maronga
	179	! Added initialization of the land surface and radiation schemes
	180	!
[1485]	181	! 1484 2014-10-21 10:53:05Z kanani
[1484]	182	! Changes due to new module structure of the plant canopy model:
[1508]	183	! canopy-related initialization (e.g. lad and canopy_heat_flux) moved to new
	184	! subroutine init_plant_canopy within the module plant_canopy_model_mod,
	185	! call of subroutine init_plant_canopy added.
[1341]	186	!
[1432]	187	! 1431 2014-07-15 14:47:17Z suehring
	188	! var_d added, in order to normalize spectra.
	189	!
[1430]	190	! 1429 2014-07-15 12:53:45Z knoop
	191	! Ensemble run capability added to parallel random number generator
	192	!
[1412]	193	! 1411 2014-05-16 18:01:51Z suehring
	194	! Initial horizontal velocity profiles were not set to zero at the first vertical
	195	! grid level in case of non-cyclic lateral boundary conditions.
	196	!
[1407]	197	! 1406 2014-05-16 13:47:01Z raasch
	198	! bugfix: setting of initial velocities at k=1 to zero not in case of a
	199	! no-slip boundary condition for uv
	200	!
[1403]	201	! 1402 2014-05-09 14:25:13Z raasch
	202	! location messages modified
	203	!
[1401]	204	! 1400 2014-05-09 14:03:54Z knoop
	205	! Parallel random number generator added
	206	!
[1385]	207	! 1384 2014-05-02 14:31:06Z raasch
	208	! location messages added
	209	!
[1362]	210	! 1361 2014-04-16 15:17:48Z hoffmann
	211	! tend_* removed
	212	! Bugfix: w_subs is not allocated anymore if it is already allocated
	213	!
[1360]	214	! 1359 2014-04-11 17:15:14Z hoffmann
	215	! module lpm_init_mod added to use statements, because lpm_init has become a
	216	! module
	217	!
[1354]	218	! 1353 2014-04-08 15:21:23Z heinze
	219	! REAL constants provided with KIND-attribute
	220	!
[1341]	221	! 1340 2014-03-25 19:45:13Z kanani
	222	! REAL constants defined as wp-kind
	223	!
[1323]	224	! 1322 2014-03-20 16:38:49Z raasch
	225	! REAL constants defined as wp-kind
	226	! module interfaces removed
	227	!
[1321]	228	! 1320 2014-03-20 08:40:49Z raasch
	229	! ONLY-attribute added to USE-statements,
	230	! kind-parameters added to all INTEGER and REAL declaration statements,
	231	! kinds are defined in new module kinds,
	232	! revision history before 2012 removed,
	233	! comment fields (!:) to be used for variable explanations added to
	234	! all variable declaration statements
	235	!
[1317]	236	! 1316 2014-03-17 07:44:59Z heinze
	237	! Bugfix: allocation of w_subs
	238	!
[1300]	239	! 1299 2014-03-06 13:15:21Z heinze
	240	! Allocate w_subs due to extension of large scale subsidence in combination
	241	! with large scale forcing data (LSF_DATA)
	242	!
[1242]	243	! 1241 2013-10-30 11:36:58Z heinze
	244	! Overwrite initial profiles in case of nudging
	245	! Inititialize shf and qsws in case of large_scale_forcing
	246	!
[1222]	247	! 1221 2013-09-10 08:59:13Z raasch
	248	! +rflags_s_inner in copyin statement, use copyin for most arrays instead of
	249	! copy
	250	!
[1213]	251	! 1212 2013-08-15 08:46:27Z raasch
	252	! array tri is allocated and included in data copy statement
	253	!
[1196]	254	! 1195 2013-07-01 12:27:57Z heinze
	255	! Bugfix: move allocation of ref_state to parin.f90 and read_var_list.f90
	256	!
[1182]	257	! 1179 2013-06-14 05:57:58Z raasch
	258	! allocate and set ref_state to be used in buoyancy terms
	259	!
[1172]	260	! 1171 2013-05-30 11:27:45Z raasch
	261	! diss array is allocated with full size if accelerator boards are used
	262	!
[1160]	263	! 1159 2013-05-21 11:58:22Z fricke
	264	! -bc_lr_dirneu, bc_lr_neudir, bc_ns_dirneu, bc_ns_neudir
	265	!
[1154]	266	! 1153 2013-05-10 14:33:08Z raasch
	267	! diss array is allocated with dummy elements even if it is not needed
[1171]	268	! (required by PGI 13.4 / CUDA 5.0)
[1154]	269	!
[1116]	270	! 1115 2013-03-26 18:16:16Z hoffmann
	271	! unused variables removed
	272	!
[1114]	273	! 1113 2013-03-10 02:48:14Z raasch
	274	! openACC directive modified
	275	!
[1112]	276	! 1111 2013-03-08 23:54:10Z raasch
	277	! openACC directives added for pres
	278	! array diss allocated only if required
	279	!
[1093]	280	! 1092 2013-02-02 11:24:22Z raasch
	281	! unused variables removed
	282	!
[1066]	283	! 1065 2012-11-22 17:42:36Z hoffmann
	284	! allocation of diss (dissipation rate) in case of turbulence = .TRUE. added
	285	!
[1054]	286	! 1053 2012-11-13 17:11:03Z hoffmann
[1053]	287	! allocation and initialisation of necessary data arrays for the two-moment
	288	! cloud physics scheme the two new prognostic equations (nr, qr):
	289	! +dr, lambda_r, mu_r, sed_, xr, s, sws, swst, , _p, t_m, _1, _2, _3,
	290	! +tend_*, prr
[979]	291	!
[1037]	292	! 1036 2012-10-22 13:43:42Z raasch
	293	! code put under GPL (PALM 3.9)
	294	!
[1033]	295	! 1032 2012-10-21 13:03:21Z letzel
	296	! save memory by not allocating pt_2 in case of neutral = .T.
	297	!
[1026]	298	! 1025 2012-10-07 16:04:41Z letzel
	299	! bugfix: swap indices of mask for ghost boundaries
	300	!
[1017]	301	! 1015 2012-09-27 09:23:24Z raasch
	302	! mask is set to zero for ghost boundaries
	303	!
[1011]	304	! 1010 2012-09-20 07:59:54Z raasch
	305	! cpp switch __nopointer added for pointer free version
	306	!
[1004]	307	! 1003 2012-09-14 14:35:53Z raasch
	308	! nxra,nyna, nzta replaced ny nxr, nyn, nzt
	309	!
[1002]	310	! 1001 2012-09-13 14:08:46Z raasch
	311	! all actions concerning leapfrog scheme removed
	312	!
[997]	313	! 996 2012-09-07 10:41:47Z raasch
	314	! little reformatting
	315	!
[979]	316	! 978 2012-08-09 08:28:32Z fricke
[978]	317	! outflow damping layer removed
	318	! roughness length for scalar quantites z0h added
	319	! damping zone for the potential temperatur in case of non-cyclic lateral
	320	! boundaries added
	321	! initialization of ptdf_x, ptdf_y
	322	! initialization of c_u_m, c_u_m_l, c_v_m, c_v_m_l, c_w_m, c_w_m_l
[708]	323	!
[850]	324	! 849 2012-03-15 10:35:09Z raasch
	325	! init_particles renamed lpm_init
	326	!
[826]	327	! 825 2012-02-19 03:03:44Z raasch
	328	! wang_collision_kernel renamed wang_kernel
	329	!
[1]	330	! Revision 1.1 1998/03/09 16:22:22 raasch
	331	! Initial revision
	332	!
	333	!
	334	! Description:
	335	! ------------
[1682]	336	!> Allocation of arrays and initialization of the 3D model via
	337	!> a) pre-run the 1D model
	338	!> or
	339	!> b) pre-set constant linear profiles
	340	!> or
	341	!> c) read values of a previous run
[1]	342	!------------------------------------------------------------------------------!
[1682]	343	SUBROUTINE init_3d_model
	344
[1]	345
[667]	346	USE advec_ws
[1320]	347
[1]	348	USE arrays_3d
[1849]	349
[2037]	350	USE cloud_parameters, &
	351	ONLY: cp, l_v, r_d
	352
[1320]	353	USE constants, &
	354	ONLY: pi
	355
[1]	356	USE control_parameters
[1320]	357
[1957]	358	USE flight_mod, &
	359	ONLY: flight_init
	360
[1320]	361	USE grid_variables, &
[2037]	362	ONLY: dx, dy, ddx2_mg, ddy2_mg
[1320]	363
[1]	364	USE indices
[1359]	365
[1429]	366	USE lpm_init_mod, &
[1359]	367	ONLY: lpm_init
[1320]	368
	369	USE kinds
[1496]	370
	371	USE land_surface_model_mod, &
[2232]	372	ONLY: lsm_init, lsm_init_arrays
[1496]	373
[1241]	374	USE ls_forcing_mod
[1849]	375
	376	USE microphysics_mod, &
	377	ONLY: collision_turbulence, microphysics_init
	378
[1320]	379	USE model_1d, &
	380	ONLY: e1d, kh1d, km1d, l1d, rif1d, u1d, us1d, usws1d, v1d, vsws1d
	381
[1783]	382	USE netcdf_interface, &
	383	ONLY: dots_max, dots_num
[1320]	384
	385	USE particle_attributes, &
	386	ONLY: particle_advection, use_sgs_for_particles, wang_kernel
	387
[1]	388	USE pegrid
[1320]	389
[1484]	390	USE plant_canopy_model_mod, &
[1826]	391	ONLY: pcm_init, plant_canopy
[1496]	392
	393	USE radiation_model_mod, &
[2270]	394	ONLY: radiation_init, radiation, radiation_scheme
[1484]	395
[1320]	396	USE random_function_mod
	397
[1400]	398	USE random_generator_parallel, &
[2172]	399	ONLY: init_parallel_random_generator
[1400]	400
[1320]	401	USE statistics, &
[1738]	402	ONLY: hom, hom_sum, mean_surface_level_height, pr_palm, rmask, &
[1833]	403	statistic_regions, sums, sums_divnew_l, sums_divold_l, sums_l, &
[2277]	404	sums_l_l, sums_wsts_bc_l, ts_value, &
[1833]	405	weight_pres, weight_substep
[2259]	406
	407	USE synthetic_turbulence_generator_mod, &
	408	ONLY: stg_init, use_synthetic_turbulence_generator
	409
[1691]	410	USE surface_layer_fluxes_mod, &
	411	ONLY: init_surface_layer_fluxes
[2232]	412
	413	USE surface_mod, &
	414	ONLY : init_surface_arrays, init_surfaces, surf_def_h, surf_lsm_h, &
	415	surf_usm_h
[1691]	416
[2007]	417	USE transpose_indices
[1]	418
[2007]	419	USE urban_surface_mod, &
[2011]	420	ONLY: usm_init_urban_surface
[2007]	421
[1914]	422	USE wind_turbine_model_mod, &
	423	ONLY: wtm_init, wtm_init_arrays, wind_turbine
	424
[1]	425	IMPLICIT NONE
	426
[1682]	427	INTEGER(iwp) :: i !<
	428	INTEGER(iwp) :: ind_array(1) !<
	429	INTEGER(iwp) :: j !<
	430	INTEGER(iwp) :: k !<
[2232]	431	INTEGER(iwp) :: k_surf !< surface level index
	432	INTEGER(iwp) :: m !< index of surface element in surface data type
	433	INTEGER(iwp) :: sr !< index of statistic region
[1]	434
[1682]	435	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: ngp_2dh_l !<
[1]	436
[1682]	437	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l !<
	438	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_s_inner_l !<
[1]	439
[2037]	440	REAL(wp) :: t_surface !< air temperature at the surface
	441
	442	REAL(wp), DIMENSION(:), ALLOCATABLE :: p_hydrostatic !< hydrostatic pressure
	443
	444	INTEGER(iwp) :: l !< loop variable
	445	INTEGER(iwp) :: nzt_l !< index of top PE boundary for multigrid level
	446	REAL(wp) :: dx_l !< grid spacing along x on different multigrid level
	447	REAL(wp) :: dy_l !< grid spacing along y on different multigrid level
	448
[1764]	449	REAL(wp), DIMENSION(1:3) :: volume_flow_area_l !<
	450	REAL(wp), DIMENSION(1:3) :: volume_flow_initial_l !<
[1]	451
[1738]	452	REAL(wp), DIMENSION(:), ALLOCATABLE :: mean_surface_level_height_l !<
[1682]	453	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l !<
	454	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_tmp !<
[1]	455
[485]	456
[1402]	457	CALL location_message( 'allocating arrays', .FALSE. )
[1]	458	!
	459	!-- Allocate arrays
[1788]	460	ALLOCATE( mean_surface_level_height(0:statistic_regions), &
	461	mean_surface_level_height_l(0:statistic_regions), &
	462	ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	463	ngp_3d(0:statistic_regions), &
	464	ngp_3d_inner(0:statistic_regions), &
	465	ngp_3d_inner_l(0:statistic_regions), &
	466	ngp_3d_inner_tmp(0:statistic_regions), &
	467	sums_divnew_l(0:statistic_regions), &
[1]	468	sums_divold_l(0:statistic_regions) )
[1195]	469	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt), rdf_sc(nzb+1:nzt) )
[1788]	470	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
	471	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
	472	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	473	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
	474	rmask(nysg:nyng,nxlg:nxrg,0:statistic_regions), &
	475	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	476	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
	477	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	478	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	479	ts_value(dots_max,0:statistic_regions) )
[978]	480	ALLOCATE( ptdf_x(nxlg:nxrg), ptdf_y(nysg:nyng) )
[1]	481
[1788]	482	ALLOCATE( d(nzb+1:nzt,nys:nyn,nxl:nxr), &
	483	kh(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	484	km(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	485	p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	486	tend(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	487
	488	#if defined( __nopointer )
[1788]	489	ALLOCATE( e(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	490	e_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	491	pt(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	492	pt_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	493	u(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	494	u_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	495	v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	496	v_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	497	w(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	498	w_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	499	te_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	500	tpt_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	501	tu_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	502	tv_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	503	tw_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	504	#else
[1788]	505	ALLOCATE( e_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	506	e_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	507	e_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	508	pt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	509	pt_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	510	u_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	511	u_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	512	u_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	513	v_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	514	v_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	515	v_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	516	w_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	517	w_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	518	w_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1788]	519	IF ( .NOT. neutral ) THEN
[1032]	520	ALLOCATE( pt_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	521	ENDIF
[1010]	522	#endif
	523
[673]	524	!
[707]	525	!-- Following array is required for perturbation pressure within the iterative
	526	!-- pressure solvers. For the multistep schemes (Runge-Kutta), array p holds
	527	!-- the weighted average of the substeps and cannot be used in the Poisson
	528	!-- solver.
	529	IF ( psolver == 'sor' ) THEN
	530	ALLOCATE( p_loc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1575]	531	ELSEIF ( psolver(1:9) == 'multigrid' ) THEN
[707]	532	!
	533	!-- For performance reasons, multigrid is using one ghost layer only
	534	ALLOCATE( p_loc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[673]	535	ENDIF
[1]	536
[1111]	537	!
	538	!-- Array for storing constant coeffficients of the tridiagonal solver
	539	IF ( psolver == 'poisfft' ) THEN
[1212]	540	ALLOCATE( tri(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1,2) )
[1111]	541	ALLOCATE( tric(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1) )
	542	ENDIF
	543
[1960]	544	IF ( humidity ) THEN
[1]	545	!
[1960]	546	!-- 3D-humidity
[1010]	547	#if defined( __nopointer )
[1788]	548	ALLOCATE( q(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	549	q_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	550	tq_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	551	#else
[1788]	552	ALLOCATE( q_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	553	q_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	554	q_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	555	#endif
[1]	556
	557	!
[1960]	558	!-- 3D-arrays needed for humidity
[75]	559	IF ( humidity ) THEN
[1010]	560	#if defined( __nopointer )
	561	ALLOCATE( vpt(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	562	#else
[667]	563	ALLOCATE( vpt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	564	#endif
[1]	565
[1788]	566	IF ( cloud_physics ) THEN
[1]	567	!
	568	!-- Liquid water content
[1010]	569	#if defined( __nopointer )
	570	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	571	#else
[667]	572	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	573	#endif
[1053]	574
	575	!
[1822]	576	!-- 3D-cloud water content
[2292]	577	IF ( .NOT. microphysics_morrison ) THEN
[1053]	578	#if defined( __nopointer )
[2292]	579	ALLOCATE( qc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	580	#else
[2292]	581	ALLOCATE( qc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	582	#endif
[2292]	583	ENDIF
[1822]	584	!
[2292]	585	!-- Precipitation amount and rate (only needed if output is switched)
	586	ALLOCATE( precipitation_amount(nysg:nyng,nxlg:nxrg), &
	587	precipitation_rate(nysg:nyng,nxlg:nxrg) )
	588
	589	!
[1822]	590	!-- 3d-precipitation rate
	591	ALLOCATE( prr(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	592
[2292]	593	IF ( microphysics_morrison ) THEN
	594	!
	595	!-- 3D-cloud drop water content, cloud drop concentration arrays
	596	#if defined( __nopointer )
	597	ALLOCATE( nc(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	598	nc_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	599	qc(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	600	qc_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	601	tnc_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg)
	602	tqc_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	603	#else
	604	ALLOCATE( nc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	605	nc_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	606	nc_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	607	qc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	608	qc_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	609	qc_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	610	#endif
	611	ENDIF
	612
[1822]	613	IF ( microphysics_seifert ) THEN
[1053]	614	!
[1822]	615	!-- 3D-rain water content, rain drop concentration arrays
[1115]	616	#if defined( __nopointer )
[1822]	617	ALLOCATE( nr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	618	nr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	619	qr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	620	qr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	621	tnr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	622	tqr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	623	#else
[1822]	624	ALLOCATE( nr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	625	nr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	626	nr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	627	qr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	628	qr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	629	qr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1115]	630	#endif
[1822]	631	ENDIF
[1053]	632
[1]	633	ENDIF
	634
	635	IF ( cloud_droplets ) THEN
	636	!
[1010]	637	!-- Liquid water content, change in liquid water content
	638	#if defined( __nopointer )
[1788]	639	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	640	ql_c(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	641	#else
[1788]	642	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	643	ql_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	644	#endif
	645	!
	646	!-- Real volume of particles (with weighting), volume of particles
[1788]	647	ALLOCATE ( ql_v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	648	ql_vp(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	649	ENDIF
	650
	651	ENDIF
	652
	653	ENDIF
[1960]	654
	655
	656	IF ( passive_scalar ) THEN
[1]	657
[1960]	658	!
	659	!-- 3D scalar arrays
	660	#if defined( __nopointer )
	661	ALLOCATE( s(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	662	s_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	663	ts_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	664	#else
	665	ALLOCATE( s_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	666	s_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	667	s_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	668	#endif
	669	ENDIF
	670
[94]	671	IF ( ocean ) THEN
[1010]	672	#if defined( __nopointer )
[1788]	673	ALLOCATE( prho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[2031]	674	rho_ocean(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1788]	675	sa(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	676	sa_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	677	tsa_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	678	#else
[1788]	679	ALLOCATE( prho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	680	rho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	681	sa_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	682	sa_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	683	sa_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[388]	684	prho => prho_1
[2031]	685	rho_ocean => rho_1 ! routines calc_mean_profile and diffusion_e require
[388]	686	! density to be apointer
[1010]	687	#endif
[94]	688	ENDIF
	689
[1]	690	!
[2037]	691	!-- Allocation of anelastic and Boussinesq approximation specific arrays
	692	ALLOCATE( p_hydrostatic(nzb:nzt+1) )
	693	ALLOCATE( rho_air(nzb:nzt+1) )
	694	ALLOCATE( rho_air_zw(nzb:nzt+1) )
	695	ALLOCATE( drho_air(nzb:nzt+1) )
	696	ALLOCATE( drho_air_zw(nzb:nzt+1) )
	697
	698	!
	699	!-- Density profile calculation for anelastic approximation
[2252]	700	t_surface = pt_surface * ( surface_pressure / 1000.0_wp )**( r_d / cp )
[2037]	701	IF ( TRIM( approximation ) == 'anelastic' ) THEN
	702	DO k = nzb, nzt+1
	703	p_hydrostatic(k) = surface_pressure * 100.0_wp * &
	704	( 1 - ( g * zu(k) ) / ( cp * t_surface ) &
	705	)**( cp / r_d )
	706	rho_air(k) = ( p_hydrostatic(k) * &
	707	( 100000.0_wp / p_hydrostatic(k) &
	708	)**( r_d / cp ) &
	709	) / ( r_d * pt_init(k) )
	710	ENDDO
	711	DO k = nzb, nzt
	712	rho_air_zw(k) = 0.5_wp * ( rho_air(k) + rho_air(k+1) )
	713	ENDDO
	714	rho_air_zw(nzt+1) = rho_air_zw(nzt) &
	715	+ 2.0_wp * ( rho_air(nzt+1) - rho_air_zw(nzt) )
	716	ELSE
[2252]	717	DO k = nzb, nzt+1
	718	p_hydrostatic(k) = surface_pressure * 100.0_wp * &
	719	( 1 - ( g * zu(nzb) ) / ( cp * t_surface ) &
	720	)**( cp / r_d )
	721	rho_air(k) = ( p_hydrostatic(k) * &
	722	( 100000.0_wp / p_hydrostatic(k) &
	723	)**( r_d / cp ) &
	724	) / ( r_d * pt_init(nzb) )
	725	ENDDO
	726	DO k = nzb, nzt
	727	rho_air_zw(k) = 0.5_wp * ( rho_air(k) + rho_air(k+1) )
	728	ENDDO
	729	rho_air_zw(nzt+1) = rho_air_zw(nzt) &
	730	+ 2.0_wp * ( rho_air(nzt+1) - rho_air_zw(nzt) )
[2037]	731	ENDIF
	732
	733	!-- compute the inverse density array in order to avoid expencive divisions
	734	drho_air = 1.0_wp / rho_air
	735	drho_air_zw = 1.0_wp / rho_air_zw
	736
	737	!
	738	!-- Allocation of flux conversion arrays
	739	ALLOCATE( heatflux_input_conversion(nzb:nzt+1) )
	740	ALLOCATE( waterflux_input_conversion(nzb:nzt+1) )
	741	ALLOCATE( momentumflux_input_conversion(nzb:nzt+1) )
	742	ALLOCATE( heatflux_output_conversion(nzb:nzt+1) )
	743	ALLOCATE( waterflux_output_conversion(nzb:nzt+1) )
	744	ALLOCATE( momentumflux_output_conversion(nzb:nzt+1) )
	745
	746	!
	747	!-- calculate flux conversion factors according to approximation and in-/output mode
	748	DO k = nzb, nzt+1
	749
	750	IF ( TRIM( flux_input_mode ) == 'kinematic' ) THEN
	751	heatflux_input_conversion(k) = rho_air_zw(k)
	752	waterflux_input_conversion(k) = rho_air_zw(k)
	753	momentumflux_input_conversion(k) = rho_air_zw(k)
	754	ELSEIF ( TRIM( flux_input_mode ) == 'dynamic' ) THEN
	755	heatflux_input_conversion(k) = 1.0_wp / cp
	756	waterflux_input_conversion(k) = 1.0_wp / l_v
	757	momentumflux_input_conversion(k) = 1.0_wp
	758	ENDIF
	759
	760	IF ( TRIM( flux_output_mode ) == 'kinematic' ) THEN
	761	heatflux_output_conversion(k) = drho_air_zw(k)
	762	waterflux_output_conversion(k) = drho_air_zw(k)
	763	momentumflux_output_conversion(k) = drho_air_zw(k)
	764	ELSEIF ( TRIM( flux_output_mode ) == 'dynamic' ) THEN
	765	heatflux_output_conversion(k) = cp
	766	waterflux_output_conversion(k) = l_v
	767	momentumflux_output_conversion(k) = 1.0_wp
	768	ENDIF
	769
	770	IF ( .NOT. humidity ) THEN
	771	waterflux_input_conversion(k) = 1.0_wp
	772	waterflux_output_conversion(k) = 1.0_wp
	773	ENDIF
	774
	775	ENDDO
	776
	777	!
	778	!-- In case of multigrid method, compute grid lengths and grid factors for the
	779	!-- grid levels with respective density on each grid
	780	IF ( psolver(1:9) == 'multigrid' ) THEN
	781
	782	ALLOCATE( ddx2_mg(maximum_grid_level) )
	783	ALLOCATE( ddy2_mg(maximum_grid_level) )
	784	ALLOCATE( dzu_mg(nzb+1:nzt+1,maximum_grid_level) )
	785	ALLOCATE( dzw_mg(nzb+1:nzt+1,maximum_grid_level) )
	786	ALLOCATE( f1_mg(nzb+1:nzt,maximum_grid_level) )
	787	ALLOCATE( f2_mg(nzb+1:nzt,maximum_grid_level) )
	788	ALLOCATE( f3_mg(nzb+1:nzt,maximum_grid_level) )
	789	ALLOCATE( rho_air_mg(nzb:nzt+1,maximum_grid_level) )
	790	ALLOCATE( rho_air_zw_mg(nzb:nzt+1,maximum_grid_level) )
	791
	792	dzu_mg(:,maximum_grid_level) = dzu
	793	rho_air_mg(:,maximum_grid_level) = rho_air
	794	!
	795	!-- Next line to ensure an equally spaced grid.
	796	dzu_mg(1,maximum_grid_level) = dzu(2)
	797	rho_air_mg(nzb,maximum_grid_level) = rho_air(nzb) + &
	798	(rho_air(nzb) - rho_air(nzb+1))
	799
	800	dzw_mg(:,maximum_grid_level) = dzw
	801	rho_air_zw_mg(:,maximum_grid_level) = rho_air_zw
	802	nzt_l = nzt
	803	DO l = maximum_grid_level-1, 1, -1
	804	dzu_mg(nzb+1,l) = 2.0_wp * dzu_mg(nzb+1,l+1)
	805	dzw_mg(nzb+1,l) = 2.0_wp * dzw_mg(nzb+1,l+1)
	806	rho_air_mg(nzb,l) = rho_air_mg(nzb,l+1) + (rho_air_mg(nzb,l+1) - rho_air_mg(nzb+1,l+1))
	807	rho_air_zw_mg(nzb,l) = rho_air_zw_mg(nzb,l+1) + (rho_air_zw_mg(nzb,l+1) - rho_air_zw_mg(nzb+1,l+1))
	808	rho_air_mg(nzb+1,l) = rho_air_mg(nzb+1,l+1)
	809	rho_air_zw_mg(nzb+1,l) = rho_air_zw_mg(nzb+1,l+1)
	810	nzt_l = nzt_l / 2
	811	DO k = 2, nzt_l+1
	812	dzu_mg(k,l) = dzu_mg(2k-2,l+1) + dzu_mg(2k-1,l+1)
	813	dzw_mg(k,l) = dzw_mg(2k-2,l+1) + dzw_mg(2k-1,l+1)
	814	rho_air_mg(k,l) = rho_air_mg(2*k-1,l+1)
	815	rho_air_zw_mg(k,l) = rho_air_zw_mg(2*k-1,l+1)
	816	ENDDO
	817	ENDDO
	818
	819	nzt_l = nzt
	820	dx_l = dx
	821	dy_l = dy
	822	DO l = maximum_grid_level, 1, -1
	823	ddx2_mg(l) = 1.0_wp / dx_l**2
	824	ddy2_mg(l) = 1.0_wp / dy_l**2
	825	DO k = nzb+1, nzt_l
	826	f2_mg(k,l) = rho_air_zw_mg(k,l) / ( dzu_mg(k+1,l) * dzw_mg(k,l) )
	827	f3_mg(k,l) = rho_air_zw_mg(k-1,l) / ( dzu_mg(k,l) * dzw_mg(k,l) )
	828	f1_mg(k,l) = 2.0_wp * ( ddx2_mg(l) + ddy2_mg(l) ) &
	829	* rho_air_mg(k,l) + f2_mg(k,l) + f3_mg(k,l)
	830	ENDDO
	831	nzt_l = nzt_l / 2
	832	dx_l = dx_l * 2.0_wp
	833	dy_l = dy_l * 2.0_wp
	834	ENDDO
	835
	836	ENDIF
	837
	838	!
[1]	839	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	840	!-- particle velocities
[2118]	841	IF ( use_sgs_for_particles .OR. wang_kernel .OR. collision_turbulence )&
	842	THEN
[1153]	843	ALLOCATE( diss(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	844	ENDIF
	845
	846	!
[1299]	847	!-- 1D-array for large scale subsidence velocity
[1361]	848	IF ( .NOT. ALLOCATED( w_subs ) ) THEN
	849	ALLOCATE ( w_subs(nzb:nzt+1) )
	850	w_subs = 0.0_wp
	851	ENDIF
[1299]	852
	853	!
[106]	854	!-- Arrays to store velocity data from t-dt and the phase speeds which
	855	!-- are needed for radiation boundary conditions
[73]	856	IF ( outflow_l ) THEN
[1788]	857	ALLOCATE( u_m_l(nzb:nzt+1,nysg:nyng,1:2), &
	858	v_m_l(nzb:nzt+1,nysg:nyng,0:1), &
[667]	859	w_m_l(nzb:nzt+1,nysg:nyng,0:1) )
[73]	860	ENDIF
	861	IF ( outflow_r ) THEN
[1788]	862	ALLOCATE( u_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	863	v_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
[667]	864	w_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx) )
[73]	865	ENDIF
[106]	866	IF ( outflow_l .OR. outflow_r ) THEN
[1788]	867	ALLOCATE( c_u(nzb:nzt+1,nysg:nyng), c_v(nzb:nzt+1,nysg:nyng), &
[667]	868	c_w(nzb:nzt+1,nysg:nyng) )
[106]	869	ENDIF
[73]	870	IF ( outflow_s ) THEN
[1788]	871	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxlg:nxrg), &
	872	v_m_s(nzb:nzt+1,1:2,nxlg:nxrg), &
[667]	873	w_m_s(nzb:nzt+1,0:1,nxlg:nxrg) )
[73]	874	ENDIF
	875	IF ( outflow_n ) THEN
[1788]	876	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	877	v_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
[667]	878	w_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg) )
[73]	879	ENDIF
[106]	880	IF ( outflow_s .OR. outflow_n ) THEN
[1788]	881	ALLOCATE( c_u(nzb:nzt+1,nxlg:nxrg), c_v(nzb:nzt+1,nxlg:nxrg), &
[667]	882	c_w(nzb:nzt+1,nxlg:nxrg) )
[106]	883	ENDIF
[996]	884	IF ( outflow_l .OR. outflow_r .OR. outflow_s .OR. outflow_n ) THEN
[978]	885	ALLOCATE( c_u_m_l(nzb:nzt+1), c_v_m_l(nzb:nzt+1), c_w_m_l(nzb:nzt+1) )
	886	ALLOCATE( c_u_m(nzb:nzt+1), c_v_m(nzb:nzt+1), c_w_m(nzb:nzt+1) )
	887	ENDIF
[73]	888
[978]	889
[1010]	890	#if ! defined( __nopointer )
[73]	891	!
[1]	892	!-- Initial assignment of the pointers
[1001]	893	e => e_1; e_p => e_2; te_m => e_3
[1032]	894	IF ( .NOT. neutral ) THEN
	895	pt => pt_1; pt_p => pt_2; tpt_m => pt_3
	896	ELSE
	897	pt => pt_1; pt_p => pt_1; tpt_m => pt_3
	898	ENDIF
[1001]	899	u => u_1; u_p => u_2; tu_m => u_3
	900	v => v_1; v_p => v_2; tv_m => v_3
	901	w => w_1; w_p => w_2; tw_m => w_3
[1]	902
[1960]	903	IF ( humidity ) THEN
[1001]	904	q => q_1; q_p => q_2; tq_m => q_3
[1053]	905	IF ( humidity ) THEN
	906	vpt => vpt_1
	907	IF ( cloud_physics ) THEN
	908	ql => ql_1
[2292]	909	IF ( .NOT. microphysics_morrison ) THEN
	910	qc => qc_1
	911	ENDIF
	912	IF ( microphysics_morrison ) THEN
	913	qc => qc_1; qc_p => qc_2; tqc_m => qc_3
	914	nc => nc_1; nc_p => nc_2; tnc_m => nc_3
	915	ENDIF
[1822]	916	IF ( microphysics_seifert ) THEN
	917	qr => qr_1; qr_p => qr_2; tqr_m => qr_3
	918	nr => nr_1; nr_p => nr_2; tnr_m => nr_3
[1053]	919	ENDIF
	920	ENDIF
	921	ENDIF
[1001]	922	IF ( cloud_droplets ) THEN
	923	ql => ql_1
	924	ql_c => ql_2
[1]	925	ENDIF
[1001]	926	ENDIF
[1960]	927
	928	IF ( passive_scalar ) THEN
	929	s => s_1; s_p => s_2; ts_m => s_3
	930	ENDIF
[1]	931
[1001]	932	IF ( ocean ) THEN
	933	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	934	ENDIF
[1010]	935	#endif
[1]	936	!
[2232]	937	!-- Initialize wall arrays
	938	CALL init_surface_arrays
	939	!
[1551]	940	!-- Allocate land surface model arrays
	941	IF ( land_surface ) THEN
[1817]	942	CALL lsm_init_arrays
[1551]	943	ENDIF
	944
	945	!
[1914]	946	!-- Allocate wind turbine model arrays
	947	IF ( wind_turbine ) THEN
	948	CALL wtm_init_arrays
	949	ENDIF
[1957]	950
	951	!
	952	!-- Initialize virtual flight measurements
	953	IF ( virtual_flight ) THEN
	954	CALL flight_init
	955	ENDIF
[1914]	956
	957	!
[709]	958	!-- Allocate arrays containing the RK coefficient for calculation of
	959	!-- perturbation pressure and turbulent fluxes. At this point values are
	960	!-- set for pressure calculation during initialization (where no timestep
	961	!-- is done). Further below the values needed within the timestep scheme
	962	!-- will be set.
[1788]	963	ALLOCATE( weight_substep(1:intermediate_timestep_count_max), &
[1878]	964	weight_pres(1:intermediate_timestep_count_max) )
[1340]	965	weight_substep = 1.0_wp
	966	weight_pres = 1.0_wp
[1918]	967	intermediate_timestep_count = 0 ! needed when simulated_time = 0.0
[673]	968
[1402]	969	CALL location_message( 'finished', .TRUE. )
[1918]	970
[673]	971	!
[1918]	972	!-- Initialize local summation arrays for routine flow_statistics.
	973	!-- This is necessary because they may not yet have been initialized when they
	974	!-- are called from flow_statistics (or - depending on the chosen model run -
	975	!-- are never initialized)
	976	sums_divnew_l = 0.0_wp
	977	sums_divold_l = 0.0_wp
	978	sums_l_l = 0.0_wp
	979	sums_wsts_bc_l = 0.0_wp
	980
	981	!
[1]	982	!-- Initialize model variables
[1788]	983	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	984	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	985	!
	986	!-- First model run of a possible job queue.
	987	!-- Initial profiles of the variables must be computes.
	988	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
[1384]	989
[1402]	990	CALL location_message( 'initializing with 1D model profiles', .FALSE. )
[1]	991	!
	992	!-- Use solutions of the 1D model as initial profiles,
	993	!-- start 1D model
	994	CALL init_1d_model
	995	!
	996	!-- Transfer initial profiles to the arrays of the 3D model
[667]	997	DO i = nxlg, nxrg
	998	DO j = nysg, nyng
[1]	999	e(:,j,i) = e1d
	1000	kh(:,j,i) = kh1d
	1001	km(:,j,i) = km1d
	1002	pt(:,j,i) = pt_init
	1003	u(:,j,i) = u1d
	1004	v(:,j,i) = v1d
	1005	ENDDO
	1006	ENDDO
	1007
[1960]	1008	IF ( humidity ) THEN
[667]	1009	DO i = nxlg, nxrg
	1010	DO j = nysg, nyng
[1]	1011	q(:,j,i) = q_init
	1012	ENDDO
	1013	ENDDO
[2292]	1014	IF ( cloud_physics .AND. microphysics_morrison ) THEN
	1015	DO i = nxlg, nxrg
	1016	DO j = nysg, nyng
	1017	qc(:,j,i) = 0.0_wp
	1018	nc(:,j,i) = 0.0_wp
	1019	ENDDO
	1020	ENDDO
	1021	ENDIF
[1822]	1022	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1053]	1023	DO i = nxlg, nxrg
	1024	DO j = nysg, nyng
[1340]	1025	qr(:,j,i) = 0.0_wp
	1026	nr(:,j,i) = 0.0_wp
[1053]	1027	ENDDO
	1028	ENDDO
	1029	ENDIF
[1]	1030	ENDIF
[2292]	1031
[1960]	1032	IF ( passive_scalar ) THEN
	1033	DO i = nxlg, nxrg
	1034	DO j = nysg, nyng
	1035	s(:,j,i) = s_init
	1036	ENDDO
	1037	ENDDO
	1038	ENDIF
[1]	1039
	1040	IF ( .NOT. constant_diffusion ) THEN
[667]	1041	DO i = nxlg, nxrg
	1042	DO j = nysg, nyng
[1]	1043	e(:,j,i) = e1d
	1044	ENDDO
	1045	ENDDO
	1046	!
	1047	!-- Store initial profiles for output purposes etc.
	1048	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	1049
	1050	ELSE
[1340]	1051	e = 0.0_wp ! must be set, because used in
[1]	1052	ENDIF
	1053	!
[1762]	1054	!-- Inside buildings set velocities back to zero
[1]	1055	IF ( topography /= 'flat' ) THEN
[1762]	1056	DO i = nxlg, nxrg
	1057	DO j = nysg, nyng
[2232]	1058	DO k = nzb, nzt
	1059	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	1060	BTEST( wall_flags_0(k,j,i), 1 ) )
	1061	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	1062	BTEST( wall_flags_0(k,j,i), 2 ) )
	1063	ENDDO
[1]	1064	ENDDO
	1065	ENDDO
[667]	1066
[1]	1067	!
	1068	!-- WARNING: The extra boundary conditions set after running the
	1069	!-- ------- 1D model impose an error on the divergence one layer
	1070	!-- below the topography; need to correct later
	1071	!-- ATTENTION: Provisional correction for Piacsek & Williams
	1072	!-- --------- advection scheme: keep u and v zero one layer below
	1073	!-- the topography.
[667]	1074	IF ( ibc_uv_b == 1 ) THEN
	1075	!
[1]	1076	!-- Neumann condition
	1077	DO i = nxl-1, nxr+1
	1078	DO j = nys-1, nyn+1
[2232]	1079	u(nzb,j,i) = u(nzb+1,j,i)
	1080	v(nzb,j,i) = v(nzb+1,j,i)
[1]	1081	ENDDO
	1082	ENDDO
	1083
	1084	ENDIF
	1085
	1086	ENDIF
	1087
[1402]	1088	CALL location_message( 'finished', .TRUE. )
[1384]	1089
[1788]	1090	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
[1]	1091	THEN
[1241]	1092
[1402]	1093	CALL location_message( 'initializing with constant profiles', .FALSE. )
[1]	1094	!
[1241]	1095	!-- Overwrite initial profiles in case of nudging
[1788]	1096	IF ( nudging ) THEN
[1241]	1097	pt_init = ptnudge(:,1)
	1098	u_init = unudge(:,1)
	1099	v_init = vnudge(:,1)
[1960]	1100	IF ( humidity ) THEN ! is passive_scalar correct???
[1241]	1101	q_init = qnudge(:,1)
	1102	ENDIF
	1103
[1788]	1104	WRITE( message_string, * ) 'Initial profiles of u, v and ', &
[1241]	1105	'scalars from NUDGING_DATA are used.'
	1106	CALL message( 'init_3d_model', 'PA0370', 0, 0, 0, 6, 0 )
	1107	ENDIF
	1108
	1109	!
[2259]	1110	!-- Overwrite initial profiles in case of synthetic turbulence generator
	1111	IF( use_synthetic_turbulence_generator ) THEN
	1112	CALL stg_init
	1113	ENDIF
	1114
	1115	!
[1]	1116	!-- Use constructed initial profiles (velocity constant with height,
	1117	!-- temperature profile with constant gradient)
[667]	1118	DO i = nxlg, nxrg
	1119	DO j = nysg, nyng
[1]	1120	pt(:,j,i) = pt_init
	1121	u(:,j,i) = u_init
	1122	v(:,j,i) = v_init
	1123	ENDDO
	1124	ENDDO
[75]	1125
[1]	1126	!
[292]	1127	!-- Set initial horizontal velocities at the lowest computational grid
	1128	!-- levels to zero in order to avoid too small time steps caused by the
	1129	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
[1815]	1130	!-- in the limiting formula!).
	1131	IF ( ibc_uv_b /= 1 ) THEN
	1132	DO i = nxlg, nxrg
	1133	DO j = nysg, nyng
[2232]	1134	DO k = nzb, nzt
	1135	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	1136	BTEST( wall_flags_0(k,j,i), 20 ) )
	1137	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	1138	BTEST( wall_flags_0(k,j,i), 21 ) )
	1139	ENDDO
[1815]	1140	ENDDO
	1141	ENDDO
	1142	ENDIF
[1]	1143
[1960]	1144	IF ( humidity ) THEN
[667]	1145	DO i = nxlg, nxrg
	1146	DO j = nysg, nyng
[1]	1147	q(:,j,i) = q_init
	1148	ENDDO
	1149	ENDDO
[2292]	1150	IF ( cloud_physics .AND. microphysics_morrison ) THEN
	1151	DO i = nxlg, nxrg
	1152	DO j = nysg, nyng
	1153	qc(:,j,i) = 0.0_wp
	1154	nc(:,j,i) = 0.0_wp
	1155	ENDDO
	1156	ENDDO
	1157	ENDIF
	1158
[1822]	1159	IF ( cloud_physics .AND. microphysics_seifert ) THEN
	1160	DO i = nxlg, nxrg
	1161	DO j = nysg, nyng
	1162	qr(:,j,i) = 0.0_wp
	1163	nr(:,j,i) = 0.0_wp
[1053]	1164	ENDDO
[1822]	1165	ENDDO
[2292]	1166	ENDIF
[1115]	1167
[1]	1168	ENDIF
[1960]	1169
	1170	IF ( passive_scalar ) THEN
	1171	DO i = nxlg, nxrg
	1172	DO j = nysg, nyng
	1173	s(:,j,i) = s_init
	1174	ENDDO
	1175	ENDDO
	1176	ENDIF
[1]	1177
[94]	1178	IF ( ocean ) THEN
[667]	1179	DO i = nxlg, nxrg
	1180	DO j = nysg, nyng
[94]	1181	sa(:,j,i) = sa_init
	1182	ENDDO
	1183	ENDDO
	1184	ENDIF
[1]	1185
	1186	IF ( constant_diffusion ) THEN
	1187	km = km_constant
	1188	kh = km / prandtl_number
[1340]	1189	e = 0.0_wp
	1190	ELSEIF ( e_init > 0.0_wp ) THEN
[108]	1191	DO k = nzb+1, nzt
[1340]	1192	km(k,:,:) = 0.1_wp * l_grid(k) * SQRT( e_init )
[108]	1193	ENDDO
	1194	km(nzb,:,:) = km(nzb+1,:,:)
	1195	km(nzt+1,:,:) = km(nzt,:,:)
	1196	kh = km / prandtl_number
	1197	e = e_init
[1]	1198	ELSE
[108]	1199	IF ( .NOT. ocean ) THEN
[1340]	1200	kh = 0.01_wp ! there must exist an initial diffusion, because
	1201	km = 0.01_wp ! otherwise no TKE would be produced by the
[108]	1202	! production terms, as long as not yet
	1203	! e = (u/cm)*2 at k=nzb+1
	1204	ELSE
[1340]	1205	kh = 0.00001_wp
	1206	km = 0.00001_wp
[108]	1207	ENDIF
[1340]	1208	e = 0.0_wp
[1]	1209	ENDIF
[1920]	1210	!
[1]	1211	!-- Compute initial temperature field and other constants used in case
	1212	!-- of a sloping surface
	1213	IF ( sloping_surface ) CALL init_slope
	1214
[1402]	1215	CALL location_message( 'finished', .TRUE. )
[1384]	1216
[1788]	1217	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
[46]	1218	THEN
[1384]	1219
[1402]	1220	CALL location_message( 'initializing by user', .FALSE. )
[46]	1221	!
	1222	!-- Initialization will completely be done by the user
	1223	CALL user_init_3d_model
	1224
[1402]	1225	CALL location_message( 'finished', .TRUE. )
[1384]	1226
[1]	1227	ENDIF
[1384]	1228
[1402]	1229	CALL location_message( 'initializing statistics, boundary conditions, etc.', &
	1230	.FALSE. )
[1384]	1231
[667]	1232	!
	1233	!-- Bottom boundary
	1234	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2 ) THEN
[1340]	1235	u(nzb,:,:) = 0.0_wp
	1236	v(nzb,:,:) = 0.0_wp
[667]	1237	ENDIF
[1]	1238
	1239	!
[151]	1240	!-- Apply channel flow boundary condition
[132]	1241	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
[1340]	1242	u(nzt+1,:,:) = 0.0_wp
	1243	v(nzt+1,:,:) = 0.0_wp
[132]	1244	ENDIF
	1245
	1246	!
[1]	1247	!-- Calculate virtual potential temperature
[1960]	1248	IF ( humidity ) vpt = pt * ( 1.0_wp + 0.61_wp * q )
[1]	1249
	1250	!
	1251	!-- Store initial profiles for output purposes etc.
	1252	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	1253	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
[667]	1254	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2) THEN
[1340]	1255	hom(nzb,1,5,:) = 0.0_wp
	1256	hom(nzb,1,6,:) = 0.0_wp
[1]	1257	ENDIF
	1258	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	1259	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	1260	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	1261
[97]	1262	IF ( ocean ) THEN
	1263	!
	1264	!-- Store initial salinity profile
	1265	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	1266	ENDIF
[1]	1267
[75]	1268	IF ( humidity ) THEN
[1]	1269	!
	1270	!-- Store initial profile of total water content, virtual potential
	1271	!-- temperature
	1272	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	1273	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	1274	IF ( cloud_physics .OR. cloud_droplets ) THEN
	1275	!
	1276	!-- Store initial profile of specific humidity and potential
	1277	!-- temperature
	1278	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	1279	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	1280	ENDIF
	1281	ENDIF
	1282
	1283	IF ( passive_scalar ) THEN
	1284	!
	1285	!-- Store initial scalar profile
[1960]	1286	hom(:,1,115,:) = SPREAD( s(:,nys,nxl), 2, statistic_regions+1 )
[1]	1287	ENDIF
	1288
	1289	!
[1400]	1290	!-- Initialize the random number generators (from numerical recipes)
	1291	CALL random_function_ini
[1429]	1292
[1400]	1293	IF ( random_generator == 'random-parallel' ) THEN
[2172]	1294	CALL init_parallel_random_generator(nx, ny, nys, nyn, nxl, nxr)
[1400]	1295	ENDIF
	1296	!
[1179]	1297	!-- Set the reference state to be used in the buoyancy terms (for ocean runs
	1298	!-- the reference state will be set (overwritten) in init_ocean)
	1299	IF ( use_single_reference_value ) THEN
[1788]	1300	IF ( .NOT. humidity ) THEN
[1179]	1301	ref_state(:) = pt_reference
	1302	ELSE
	1303	ref_state(:) = vpt_reference
	1304	ENDIF
	1305	ELSE
[1788]	1306	IF ( .NOT. humidity ) THEN
[1179]	1307	ref_state(:) = pt_init(:)
	1308	ELSE
	1309	ref_state(:) = vpt(:,nys,nxl)
	1310	ENDIF
	1311	ENDIF
[152]	1312
	1313	!
[707]	1314	!-- For the moment, vertical velocity is zero
[1340]	1315	w = 0.0_wp
[1]	1316
	1317	!
	1318	!-- Initialize array sums (must be defined in first call of pres)
[1340]	1319	sums = 0.0_wp
[1]	1320
	1321	!
[707]	1322	!-- In case of iterative solvers, p must get an initial value
[1575]	1323	IF ( psolver(1:9) == 'multigrid' .OR. psolver == 'sor' ) p = 0.0_wp
[707]	1324
	1325	!
[72]	1326	!-- Treating cloud physics, liquid water content and precipitation amount
	1327	!-- are zero at beginning of the simulation
	1328	IF ( cloud_physics ) THEN
[1340]	1329	ql = 0.0_wp
[1822]	1330	qc = 0.0_wp
	1331
	1332	precipitation_amount = 0.0_wp
[72]	1333	ENDIF
[673]	1334	!
[1]	1335	!-- Impose vortex with vertical axis on the initial velocity profile
	1336	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	1337	CALL init_rankine
	1338	ENDIF
	1339
	1340	!
	1341	!-- Impose temperature anomaly (advection test only)
	1342	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	1343	CALL init_pt_anomaly
	1344	ENDIF
	1345
	1346	!
	1347	!-- If required, change the surface temperature at the start of the 3D run
[1340]	1348	IF ( pt_surface_initial_change /= 0.0_wp ) THEN
[1]	1349	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	1350	ENDIF
	1351
	1352	!
	1353	!-- If required, change the surface humidity/scalar at the start of the 3D
	1354	!-- run
[1960]	1355	IF ( humidity .AND. q_surface_initial_change /= 0.0_wp ) &
[1]	1356	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
[1960]	1357
	1358	IF ( passive_scalar .AND. s_surface_initial_change /= 0.0_wp ) &
	1359	s(nzb,:,:) = s(nzb,:,:) + s_surface_initial_change
	1360
[1]	1361
	1362	!
	1363	!-- Initialize old and new time levels.
[1340]	1364	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1]	1365	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	1366
[1960]	1367	IF ( humidity ) THEN
[1340]	1368	tq_m = 0.0_wp
[1]	1369	q_p = q
[2292]	1370	IF ( cloud_physics .AND. microphysics_morrison ) THEN
	1371	tqc_m = 0.0_wp
	1372	qc_p = qc
	1373	tnc_m = 0.0_wp
	1374	nc_p = nc
	1375	ENDIF
[1822]	1376	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1340]	1377	tqr_m = 0.0_wp
[1822]	1378	qr_p = qr
[1340]	1379	tnr_m = 0.0_wp
[1822]	1380	nr_p = nr
[1053]	1381	ENDIF
[1]	1382	ENDIF
[1960]	1383
	1384	IF ( passive_scalar ) THEN
	1385	ts_m = 0.0_wp
	1386	s_p = s
	1387	ENDIF
[1]	1388
[94]	1389	IF ( ocean ) THEN
[1340]	1390	tsa_m = 0.0_wp
[94]	1391	sa_p = sa
	1392	ENDIF
[667]	1393
[1402]	1394	CALL location_message( 'finished', .TRUE. )
[94]	1395
[1788]	1396	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[2232]	1397	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	1398	THEN
[1384]	1399
[1402]	1400	CALL location_message( 'initializing in case of restart / cyclic_fill', &
	1401	.FALSE. )
[1]	1402	!
[2232]	1403	!-- Initialize surface elements and its attributes, e.g. heat- and
	1404	!-- momentumfluxes, roughness, scaling parameters. As number of surface
	1405	!-- elements might be different between runs, e.g. in case of cyclic fill,
	1406	!-- and not all surface elements are read, surface elements need to be
	1407	!-- initialized before.
	1408	CALL init_surfaces
	1409	!
[767]	1410	!-- When reading data for cyclic fill of 3D prerun data files, read
	1411	!-- some of the global variables from the restart file which are required
	1412	!-- for initializing the inflow
[328]	1413	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[559]	1414
[759]	1415	DO i = 0, io_blocks-1
	1416	IF ( i == io_group ) THEN
	1417	CALL read_parts_of_var_list
	1418	CALL close_file( 13 )
	1419	ENDIF
	1420	#if defined( __parallel )
	1421	CALL MPI_BARRIER( comm2d, ierr )
	1422	#endif
	1423	ENDDO
[328]	1424
[767]	1425	ENDIF
	1426
[151]	1427	!
[767]	1428	!-- Read binary data from restart file
	1429	DO i = 0, io_blocks-1
	1430	IF ( i == io_group ) THEN
	1431	CALL read_3d_binary
	1432	ENDIF
	1433	#if defined( __parallel )
	1434	CALL MPI_BARRIER( comm2d, ierr )
	1435	#endif
	1436	ENDDO
	1437
[328]	1438	!
[767]	1439	!-- Initialization of the turbulence recycling method
[1788]	1440	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
[767]	1441	turbulent_inflow ) THEN
	1442	!
	1443	!-- First store the profiles to be used at the inflow.
	1444	!-- These profiles are the (temporally) and horizontally averaged vertical
	1445	!-- profiles from the prerun. Alternatively, prescribed profiles
	1446	!-- for u,v-components can be used.
[1960]	1447	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,7) )
[151]	1448
[767]	1449	IF ( use_prescribed_profile_data ) THEN
	1450	mean_inflow_profiles(:,1) = u_init ! u
	1451	mean_inflow_profiles(:,2) = v_init ! v
	1452	ELSE
[328]	1453	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	1454	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
[767]	1455	ENDIF
	1456	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	1457	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[1960]	1458	IF ( humidity ) &
	1459	mean_inflow_profiles(:,6) = hom_sum(:,41,0) ! q
	1460	IF ( passive_scalar ) &
	1461	mean_inflow_profiles(:,7) = hom_sum(:,115,0) ! s
[151]	1462
	1463	!
[767]	1464	!-- If necessary, adjust the horizontal flow field to the prescribed
	1465	!-- profiles
	1466	IF ( use_prescribed_profile_data ) THEN
	1467	DO i = nxlg, nxrg
[667]	1468	DO j = nysg, nyng
[328]	1469	DO k = nzb, nzt+1
[767]	1470	u(k,j,i) = u(k,j,i) - hom_sum(k,1,0) + u_init(k)
	1471	v(k,j,i) = v(k,j,i) - hom_sum(k,2,0) + v_init(k)
[328]	1472	ENDDO
[151]	1473	ENDDO
[767]	1474	ENDDO
	1475	ENDIF
[151]	1476
	1477	!
[767]	1478	!-- Use these mean profiles at the inflow (provided that Dirichlet
	1479	!-- conditions are used)
	1480	IF ( inflow_l ) THEN
	1481	DO j = nysg, nyng
	1482	DO k = nzb, nzt+1
	1483	u(k,j,nxlg:-1) = mean_inflow_profiles(k,1)
	1484	v(k,j,nxlg:-1) = mean_inflow_profiles(k,2)
[1340]	1485	w(k,j,nxlg:-1) = 0.0_wp
[767]	1486	pt(k,j,nxlg:-1) = mean_inflow_profiles(k,4)
	1487	e(k,j,nxlg:-1) = mean_inflow_profiles(k,5)
[1960]	1488	IF ( humidity ) &
[1615]	1489	q(k,j,nxlg:-1) = mean_inflow_profiles(k,6)
[1960]	1490	IF ( passive_scalar ) &
	1491	s(k,j,nxlg:-1) = mean_inflow_profiles(k,7)
[767]	1492	ENDDO
	1493	ENDDO
	1494	ENDIF
	1495
[151]	1496	!
[767]	1497	!-- Calculate the damping factors to be used at the inflow. For a
	1498	!-- turbulent inflow the turbulent fluctuations have to be limited
	1499	!-- vertically because otherwise the turbulent inflow layer will grow
	1500	!-- in time.
[1340]	1501	IF ( inflow_damping_height == 9999999.9_wp ) THEN
[767]	1502	!
	1503	!-- Default: use the inversion height calculated by the prerun; if
	1504	!-- this is zero, inflow_damping_height must be explicitly
	1505	!-- specified.
[1340]	1506	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0_wp ) THEN
[767]	1507	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1508	ELSE
[1788]	1509	WRITE( message_string, * ) 'inflow_damping_height must be ', &
	1510	'explicitly specified because&the inversion height ', &
[767]	1511	'calculated by the prerun is zero.'
	1512	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
[292]	1513	ENDIF
[151]	1514
[767]	1515	ENDIF
	1516
[1340]	1517	IF ( inflow_damping_width == 9999999.9_wp ) THEN
[151]	1518	!
[767]	1519	!-- Default for the transition range: one tenth of the undamped
	1520	!-- layer
[1340]	1521	inflow_damping_width = 0.1_wp * inflow_damping_height
[151]	1522
[767]	1523	ENDIF
[151]	1524
[767]	1525	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1526
[767]	1527	DO k = nzb, nzt+1
[151]	1528
[767]	1529	IF ( zu(k) <= inflow_damping_height ) THEN
[1340]	1530	inflow_damping_factor(k) = 1.0_wp
[996]	1531	ELSEIF ( zu(k) <= ( inflow_damping_height + inflow_damping_width ) ) THEN
[1340]	1532	inflow_damping_factor(k) = 1.0_wp - &
[996]	1533	( zu(k) - inflow_damping_height ) / &
	1534	inflow_damping_width
[767]	1535	ELSE
[1340]	1536	inflow_damping_factor(k) = 0.0_wp
[767]	1537	ENDIF
[151]	1538
[767]	1539	ENDDO
[151]	1540
[147]	1541	ENDIF
	1542
[152]	1543	!
[359]	1544	!-- Inside buildings set velocities and TKE back to zero
[1788]	1545	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
[359]	1546	topography /= 'flat' ) THEN
	1547	!
	1548	!-- Inside buildings set velocities and TKE back to zero.
	1549	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1550	!-- maybe revise later.
[1001]	1551	DO i = nxlg, nxrg
	1552	DO j = nysg, nyng
[2232]	1553	DO k = nzb, nzt
	1554	u(k,j,i) = MERGE( u(k,j,i), 0.0_wp, &
	1555	BTEST( wall_flags_0(k,j,i), 1 ) )
	1556	v(k,j,i) = MERGE( v(k,j,i), 0.0_wp, &
	1557	BTEST( wall_flags_0(k,j,i), 2 ) )
	1558	w(k,j,i) = MERGE( w(k,j,i), 0.0_wp, &
	1559	BTEST( wall_flags_0(k,j,i), 3 ) )
	1560	e(k,j,i) = MERGE( e(k,j,i), 0.0_wp, &
	1561	BTEST( wall_flags_0(k,j,i), 0 ) )
	1562	tu_m(k,j,i) = MERGE( tu_m(k,j,i), 0.0_wp, &
	1563	BTEST( wall_flags_0(k,j,i), 1 ) )
	1564	tv_m(k,j,i) = MERGE( tv_m(k,j,i), 0.0_wp, &
	1565	BTEST( wall_flags_0(k,j,i), 2 ) )
	1566	tw_m(k,j,i) = MERGE( tw_m(k,j,i), 0.0_wp, &
	1567	BTEST( wall_flags_0(k,j,i), 3 ) )
	1568	te_m(k,j,i) = MERGE( te_m(k,j,i), 0.0_wp, &
	1569	BTEST( wall_flags_0(k,j,i), 0 ) )
	1570	tpt_m(k,j,i) = MERGE( tpt_m(k,j,i), 0.0_wp, &
	1571	BTEST( wall_flags_0(k,j,i), 0 ) )
	1572	ENDDO
[359]	1573	ENDDO
[1001]	1574	ENDDO
[359]	1575
	1576	ENDIF
	1577
	1578	!
[1]	1579	!-- Calculate initial temperature field and other constants used in case
	1580	!-- of a sloping surface
	1581	IF ( sloping_surface ) CALL init_slope
	1582
	1583	!
	1584	!-- Initialize new time levels (only done in order to set boundary values
	1585	!-- including ghost points)
	1586	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[1960]	1587	IF ( humidity ) THEN
[1053]	1588	q_p = q
[2292]	1589	IF ( cloud_physics .AND. microphysics_morrison ) THEN
	1590	qc_p = qc
	1591	nc_p = nc
	1592	ENDIF
[1822]	1593	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1053]	1594	qr_p = qr
	1595	nr_p = nr
	1596	ENDIF
	1597	ENDIF
[1960]	1598	IF ( passive_scalar ) s_p = s
	1599	IF ( ocean ) sa_p = sa
[1]	1600
[181]	1601	!
	1602	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1603	!-- have to be predefined here because they are used (but multiplied with 0)
	1604	!-- there before they are set.
[1340]	1605	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1960]	1606	IF ( humidity ) THEN
[1340]	1607	tq_m = 0.0_wp
[2292]	1608	IF ( cloud_physics .AND. microphysics_morrison ) THEN
	1609	tqc_m = 0.0_wp
	1610	tnc_m = 0.0_wp
	1611	ENDIF
[1822]	1612	IF ( cloud_physics .AND. microphysics_seifert ) THEN
[1340]	1613	tqr_m = 0.0_wp
	1614	tnr_m = 0.0_wp
[1053]	1615	ENDIF
	1616	ENDIF
[1960]	1617	IF ( passive_scalar ) ts_m = 0.0_wp
	1618	IF ( ocean ) tsa_m = 0.0_wp
[2259]	1619	!
	1620	!-- Initialize synthetic turbulence generator in case of restart.
	1621	IF ( TRIM( initializing_actions ) == 'read_restart_data' .AND. &
	1622	use_synthetic_turbulence_generator ) CALL stg_init
[181]	1623
[1402]	1624	CALL location_message( 'finished', .TRUE. )
[1384]	1625
[1]	1626	ELSE
	1627	!
	1628	!-- Actually this part of the programm should not be reached
[254]	1629	message_string = 'unknown initializing problem'
	1630	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1631	ENDIF
	1632
[151]	1633
	1634	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1635	!
[151]	1636	!-- Initialize old timelevels needed for radiation boundary conditions
	1637	IF ( outflow_l ) THEN
	1638	u_m_l(:,:,:) = u(:,:,1:2)
	1639	v_m_l(:,:,:) = v(:,:,0:1)
	1640	w_m_l(:,:,:) = w(:,:,0:1)
	1641	ENDIF
	1642	IF ( outflow_r ) THEN
	1643	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1644	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1645	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1646	ENDIF
	1647	IF ( outflow_s ) THEN
	1648	u_m_s(:,:,:) = u(:,0:1,:)
	1649	v_m_s(:,:,:) = v(:,1:2,:)
	1650	w_m_s(:,:,:) = w(:,0:1,:)
	1651	ENDIF
	1652	IF ( outflow_n ) THEN
	1653	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1654	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1655	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1656	ENDIF
[667]	1657
[151]	1658	ENDIF
[680]	1659
[667]	1660	!
	1661	!-- Calculate the initial volume flow at the right and north boundary
[709]	1662	IF ( conserve_volume_flow ) THEN
[151]	1663
[767]	1664	IF ( use_prescribed_profile_data ) THEN
[667]	1665
[1340]	1666	volume_flow_initial_l = 0.0_wp
	1667	volume_flow_area_l = 0.0_wp
[732]	1668
[667]	1669	IF ( nxr == nx ) THEN
	1670	DO j = nys, nyn
[2232]	1671	DO k = nzb+1, nzt
[1788]	1672	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[2232]	1673	u_init(k) * dzw(k) &
	1674	* MERGE( 1.0_wp, 0.0_wp, &
	1675	BTEST( wall_flags_0(k,j,nxr), 1 )&
	1676	)
	1677
	1678	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1679	* MERGE( 1.0_wp, 0.0_wp, &
	1680	BTEST( wall_flags_0(k,j,nxr), 1 )&
	1681	)
[767]	1682	ENDDO
	1683	ENDDO
	1684	ENDIF
	1685
	1686	IF ( nyn == ny ) THEN
	1687	DO i = nxl, nxr
[2232]	1688	DO k = nzb+1, nzt
	1689	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1690	v_init(k) * dzw(k) &
	1691	* MERGE( 1.0_wp, 0.0_wp, &
	1692	BTEST( wall_flags_0(k,nyn,i), 2 )&
	1693	)
	1694	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1695	* MERGE( 1.0_wp, 0.0_wp, &
	1696	BTEST( wall_flags_0(k,nyn,i), 2 )&
	1697	)
[767]	1698	ENDDO
	1699	ENDDO
	1700	ENDIF
	1701
	1702	#if defined( __parallel )
	1703	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1704	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1705	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1706	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1707
	1708	#else
	1709	volume_flow_initial = volume_flow_initial_l
	1710	volume_flow_area = volume_flow_area_l
	1711	#endif
	1712
	1713	ELSEIF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
	1714
[1340]	1715	volume_flow_initial_l = 0.0_wp
	1716	volume_flow_area_l = 0.0_wp
[767]	1717
	1718	IF ( nxr == nx ) THEN
	1719	DO j = nys, nyn
[2232]	1720	DO k = nzb+1, nzt
[1788]	1721	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[2232]	1722	hom_sum(k,1,0) * dzw(k) &
	1723	* MERGE( 1.0_wp, 0.0_wp, &
	1724	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1725	)
	1726	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1727	* MERGE( 1.0_wp, 0.0_wp, &
	1728	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1729	)
[667]	1730	ENDDO
	1731	ENDDO
	1732	ENDIF
	1733
	1734	IF ( nyn == ny ) THEN
	1735	DO i = nxl, nxr
[2232]	1736	DO k = nzb+1, nzt
[1788]	1737	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[2232]	1738	hom_sum(k,2,0) * dzw(k) &
	1739	* MERGE( 1.0_wp, 0.0_wp, &
	1740	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1741	)
	1742	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1743	* MERGE( 1.0_wp, 0.0_wp, &
	1744	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1745	)
[667]	1746	ENDDO
	1747	ENDDO
	1748	ENDIF
	1749
[732]	1750	#if defined( __parallel )
	1751	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1752	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1753	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1754	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1755
	1756	#else
	1757	volume_flow_initial = volume_flow_initial_l
	1758	volume_flow_area = volume_flow_area_l
	1759	#endif
	1760
[667]	1761	ELSEIF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
	1762
[1340]	1763	volume_flow_initial_l = 0.0_wp
	1764	volume_flow_area_l = 0.0_wp
[732]	1765
[667]	1766	IF ( nxr == nx ) THEN
	1767	DO j = nys, nyn
[2232]	1768	DO k = nzb+1, nzt
	1769	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
	1770	u(k,j,nx) * dzw(k) &
	1771	* MERGE( 1.0_wp, 0.0_wp, &
	1772	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1773	)
	1774	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k) &
	1775	* MERGE( 1.0_wp, 0.0_wp, &
	1776	BTEST( wall_flags_0(k,j,nx), 1 ) &
	1777	)
[667]	1778	ENDDO
	1779	ENDDO
	1780	ENDIF
	1781
	1782	IF ( nyn == ny ) THEN
	1783	DO i = nxl, nxr
[2232]	1784	DO k = nzb+1, nzt
[1788]	1785	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[2232]	1786	v(k,ny,i) * dzw(k) &
	1787	* MERGE( 1.0_wp, 0.0_wp, &
	1788	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1789	)
	1790	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k) &
	1791	* MERGE( 1.0_wp, 0.0_wp, &
	1792	BTEST( wall_flags_0(k,ny,i), 2 ) &
	1793	)
[667]	1794	ENDDO
	1795	ENDDO
	1796	ENDIF
	1797
	1798	#if defined( __parallel )
[732]	1799	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1800	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1801	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1802	2, MPI_REAL, MPI_SUM, comm2d, ierr )
[667]	1803
	1804	#else
[732]	1805	volume_flow_initial = volume_flow_initial_l
	1806	volume_flow_area = volume_flow_area_l
[667]	1807	#endif
	1808
[732]	1809	ENDIF
	1810
[151]	1811	!
[709]	1812	!-- In case of 'bulk_velocity' mode, volume_flow_initial is calculated
	1813	!-- from u\|v_bulk instead
[680]	1814	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	1815	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	1816	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	1817	ENDIF
[667]	1818
[680]	1819	ENDIF
[2232]	1820	!
	1821	!-- Initialize surface elements and its attributes, e.g. heat- and
	1822	!-- momentumfluxes, roughness, scaling parameters.
	1823	!-- This is already done in case of restart data.
	1824	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
	1825	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1826	CALL init_surfaces
	1827	!
	1828	!-- Finally, if random_heatflux is set, disturb shf at horizontal
	1829	!-- surfaces. Actually, this should be done in surface_mod, where all other
	1830	!-- initializations of surface quantities are done. However, this
	1831	!-- would create a ring dependency, hence, it is done here. Maybe delete
	1832	!-- disturb_heatflux and tranfer the respective code directly into the
	1833	!-- initialization in surface_mod.
	1834	IF ( use_surface_fluxes .AND. constant_heatflux .AND. &
	1835	random_heatflux ) THEN
	1836	IF ( surf_def_h(0)%ns >= 1 ) CALL disturb_heatflux( surf_def_h(0) )
	1837	IF ( surf_lsm_h%ns >= 1 ) CALL disturb_heatflux( surf_lsm_h )
	1838	IF ( surf_usm_h%ns >= 1 ) CALL disturb_heatflux( surf_usm_h )
	1839	ENDIF
	1840	ENDIF
[680]	1841
[787]	1842	!
[2232]	1843	!-- Initialize surface forcing corresponding to large-scale forcing. Therein,
	1844	!-- initialize heat-fluxes, etc. via datatype. Revise it later!
	1845	IF ( large_scale_forcing .AND. lsf_surf ) THEN
	1846	IF ( use_surface_fluxes .AND. constant_heatflux ) THEN
	1847	CALL ls_forcing_surf ( simulated_time )
	1848	ENDIF
	1849	ENDIF
	1850	!
[787]	1851	!-- Initialize quantities for special advections schemes
	1852	CALL init_advec
[680]	1853
[667]	1854	!
[680]	1855	!-- Impose random perturbation on the horizontal velocity field and then
	1856	!-- remove the divergences from the velocity field at the initial stage
[1788]	1857	IF ( create_disturbances .AND. disturbance_energy_limit /= 0.0_wp .AND. &
	1858	TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[680]	1859	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1860
[1402]	1861	CALL location_message( 'creating initial disturbances', .FALSE. )
[2232]	1862	CALL disturb_field( 'u', tend, u )
	1863	CALL disturb_field( 'v', tend, v )
[1402]	1864	CALL location_message( 'finished', .TRUE. )
[1384]	1865
[1402]	1866	CALL location_message( 'calling pressure solver', .FALSE. )
[680]	1867	n_sor = nsor_ini
	1868	CALL pres
	1869	n_sor = nsor
[1402]	1870	CALL location_message( 'finished', .TRUE. )
[1384]	1871
[680]	1872	ENDIF
	1873
	1874	!
[1484]	1875	!-- If required, initialize quantities needed for the plant canopy model
[2007]	1876	IF ( plant_canopy ) THEN
	1877	CALL location_message( 'initializing plant canopy model', .FALSE. )
	1878	CALL pcm_init
	1879	CALL location_message( 'finished', .TRUE. )
	1880	ENDIF
[138]	1881
	1882	!
[1]	1883	!-- If required, initialize dvrp-software
[1340]	1884	IF ( dt_dvrp /= 9999999.9_wp ) CALL init_dvrp
[1]	1885
[96]	1886	IF ( ocean ) THEN
[1]	1887	!
[96]	1888	!-- Initialize quantities needed for the ocean model
	1889	CALL init_ocean
[388]	1890
[96]	1891	ELSE
	1892	!
	1893	!-- Initialize quantities for handling cloud physics
[849]	1894	!-- This routine must be called before lpm_init, because
[96]	1895	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
[849]	1896	!-- lpm_init) is not defined.
[96]	1897	CALL init_cloud_physics
[1849]	1898	!
	1899	!-- Initialize bulk cloud microphysics
	1900	CALL microphysics_init
[96]	1901	ENDIF
[1]	1902
	1903	!
	1904	!-- If required, initialize particles
[849]	1905	IF ( particle_advection ) CALL lpm_init
[1]	1906
[1585]	1907	!
	1908	!-- If required, initialize quantities needed for the LSM
	1909	IF ( land_surface ) THEN
	1910	CALL location_message( 'initializing land surface model', .FALSE. )
[1817]	1911	CALL lsm_init
[1585]	1912	CALL location_message( 'finished', .TRUE. )
	1913	ENDIF
[1496]	1914
[1]	1915	!
[1691]	1916	!-- Initialize surface layer (done after LSM as roughness length are required
	1917	!-- for initialization
	1918	IF ( constant_flux_layer ) THEN
	1919	CALL location_message( 'initializing surface layer', .FALSE. )
	1920	CALL init_surface_layer_fluxes
	1921	CALL location_message( 'finished', .TRUE. )
	1922	ENDIF
	1923
	1924	!
[1496]	1925	!-- If required, initialize radiation model
	1926	IF ( radiation ) THEN
[1585]	1927	CALL location_message( 'initializing radiation model', .FALSE. )
[1826]	1928	CALL radiation_init
[1585]	1929	CALL location_message( 'finished', .TRUE. )
[1496]	1930	ENDIF
[2007]	1931
[2270]	1932
[1914]	1933	!
[2270]	1934	!-- Temporary solution to add LSM and radiation time series to the default
	1935	!-- output
	1936	IF ( land_surface .OR. radiation ) THEN
	1937	IF ( TRIM( radiation_scheme ) == 'rrtmg' ) THEN
	1938	dots_num = dots_num + 15
	1939	ELSE
	1940	dots_num = dots_num + 11
	1941	ENDIF
	1942	ENDIF
	1943
	1944	!
[2007]	1945	!-- If required, initialize urban surface model
	1946	IF ( urban_surface ) THEN
	1947	CALL location_message( 'initializing urban surface model', .FALSE. )
	1948	CALL usm_init_urban_surface
	1949	CALL location_message( 'finished', .TRUE. )
	1950	ENDIF
	1951
	1952	!
[1914]	1953	!-- If required, initialize quantities needed for the wind turbine model
	1954	IF ( wind_turbine ) THEN
	1955	CALL location_message( 'initializing wind turbine model', .FALSE. )
	1956	CALL wtm_init
	1957	CALL location_message( 'finished', .TRUE. )
	1958	ENDIF
[1496]	1959
[1914]	1960
[1496]	1961	!
[673]	1962	!-- Initialize the ws-scheme.
	1963	IF ( ws_scheme_sca .OR. ws_scheme_mom ) CALL ws_init
[1]	1964
	1965	!
[709]	1966	!-- Setting weighting factors for calculation of perturbation pressure
[1762]	1967	!-- and turbulent quantities from the RK substeps
[709]	1968	IF ( TRIM(timestep_scheme) == 'runge-kutta-3' ) THEN ! for RK3-method
	1969
[1322]	1970	weight_substep(1) = 1._wp/6._wp
	1971	weight_substep(2) = 3._wp/10._wp
	1972	weight_substep(3) = 8._wp/15._wp
[709]	1973
[1322]	1974	weight_pres(1) = 1._wp/3._wp
	1975	weight_pres(2) = 5._wp/12._wp
	1976	weight_pres(3) = 1._wp/4._wp
[709]	1977
	1978	ELSEIF ( TRIM(timestep_scheme) == 'runge-kutta-2' ) THEN ! for RK2-method
	1979
[1322]	1980	weight_substep(1) = 1._wp/2._wp
	1981	weight_substep(2) = 1._wp/2._wp
[673]	1982
[1322]	1983	weight_pres(1) = 1._wp/2._wp
	1984	weight_pres(2) = 1._wp/2._wp
[709]	1985
[1001]	1986	ELSE ! for Euler-method
[709]	1987
[1340]	1988	weight_substep(1) = 1.0_wp
	1989	weight_pres(1) = 1.0_wp
[709]	1990
[673]	1991	ENDIF
	1992
	1993	!
[1]	1994	!-- Initialize Rayleigh damping factors
[1340]	1995	rdf = 0.0_wp
	1996	rdf_sc = 0.0_wp
	1997	IF ( rayleigh_damping_factor /= 0.0_wp ) THEN
[1788]	1998	IF ( .NOT. ocean ) THEN
[108]	1999	DO k = nzb+1, nzt
	2000	IF ( zu(k) >= rayleigh_damping_height ) THEN
[1788]	2001	rdf(k) = rayleigh_damping_factor * &
[1340]	2002	( SIN( pi * 0.5_wp * ( zu(k) - rayleigh_damping_height ) &
[1788]	2003	/ ( zu(nzt) - rayleigh_damping_height ) ) &
[1]	2004	)**2
[108]	2005	ENDIF
	2006	ENDDO
	2007	ELSE
	2008	DO k = nzt, nzb+1, -1
	2009	IF ( zu(k) <= rayleigh_damping_height ) THEN
[1788]	2010	rdf(k) = rayleigh_damping_factor * &
[1340]	2011	( SIN( pi * 0.5_wp * ( rayleigh_damping_height - zu(k) ) &
[1788]	2012	/ ( rayleigh_damping_height - zu(nzb+1) ) ) &
[108]	2013	)**2
	2014	ENDIF
	2015	ENDDO
	2016	ENDIF
[1]	2017	ENDIF
[785]	2018	IF ( scalar_rayleigh_damping ) rdf_sc = rdf
[1]	2019
	2020	!
[240]	2021	!-- Initialize the starting level and the vertical smoothing factor used for
	2022	!-- the external pressure gradient
[1340]	2023	dp_smooth_factor = 1.0_wp
[240]	2024	IF ( dp_external ) THEN
	2025	!
	2026	!-- Set the starting level dp_level_ind_b only if it has not been set before
	2027	!-- (e.g. in init_grid).
	2028	IF ( dp_level_ind_b == 0 ) THEN
	2029	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	2030	dp_level_ind_b = ind_array(1) - 1 + nzb
	2031	! MINLOC uses lower array bound 1
	2032	ENDIF
	2033	IF ( dp_smooth ) THEN
[1340]	2034	dp_smooth_factor(:dp_level_ind_b) = 0.0_wp
[240]	2035	DO k = dp_level_ind_b+1, nzt
[1340]	2036	dp_smooth_factor(k) = 0.5_wp * ( 1.0_wp + SIN( pi * &
	2037	( REAL( k - dp_level_ind_b, KIND=wp ) / &
	2038	REAL( nzt - dp_level_ind_b, KIND=wp ) - 0.5_wp ) ) )
[240]	2039	ENDDO
	2040	ENDIF
	2041	ENDIF
	2042
	2043	!
[978]	2044	!-- Initialize damping zone for the potential temperature in case of
	2045	!-- non-cyclic lateral boundaries. The damping zone has the maximum value
	2046	!-- at the inflow boundary and decreases to zero at pt_damping_width.
[1340]	2047	ptdf_x = 0.0_wp
	2048	ptdf_y = 0.0_wp
[1159]	2049	IF ( bc_lr_dirrad ) THEN
[996]	2050	DO i = nxl, nxr
[978]	2051	IF ( ( i * dx ) < pt_damping_width ) THEN
[1340]	2052	ptdf_x(i) = pt_damping_factor * ( SIN( pi * 0.5_wp * &
	2053	REAL( pt_damping_width - i * dx, KIND=wp ) / ( &
[1788]	2054	REAL( pt_damping_width, KIND=wp ) ) ) )**2
[73]	2055	ENDIF
	2056	ENDDO
[1159]	2057	ELSEIF ( bc_lr_raddir ) THEN
[996]	2058	DO i = nxl, nxr
[978]	2059	IF ( ( i * dx ) > ( nx * dx - pt_damping_width ) ) THEN
[1322]	2060	ptdf_x(i) = pt_damping_factor * &
[1340]	2061	SIN( pi * 0.5_wp * &
	2062	( ( i - nx ) * dx + pt_damping_width ) / &
	2063	REAL( pt_damping_width, KIND=wp ) )**2
[73]	2064	ENDIF
[978]	2065	ENDDO
[1159]	2066	ELSEIF ( bc_ns_dirrad ) THEN
[996]	2067	DO j = nys, nyn
[978]	2068	IF ( ( j * dy ) > ( ny * dy - pt_damping_width ) ) THEN
[1322]	2069	ptdf_y(j) = pt_damping_factor * &
[1340]	2070	SIN( pi * 0.5_wp * &
	2071	( ( j - ny ) * dy + pt_damping_width ) / &
	2072	REAL( pt_damping_width, KIND=wp ) )**2
[1]	2073	ENDIF
[978]	2074	ENDDO
[1159]	2075	ELSEIF ( bc_ns_raddir ) THEN
[996]	2076	DO j = nys, nyn
[978]	2077	IF ( ( j * dy ) < pt_damping_width ) THEN
[1322]	2078	ptdf_y(j) = pt_damping_factor * &
[1340]	2079	SIN( pi * 0.5_wp * &
	2080	( pt_damping_width - j * dy ) / &
	2081	REAL( pt_damping_width, KIND=wp ) )**2
[1]	2082	ENDIF
[73]	2083	ENDDO
[1]	2084	ENDIF
	2085
	2086	!
	2087	!-- Pre-set masks for regional statistics. Default is the total model domain.
[1015]	2088	!-- Ghost points are excluded because counting values at the ghost boundaries
	2089	!-- would bias the statistics
[1340]	2090	rmask = 1.0_wp
	2091	rmask(:,nxlg:nxl-1,:) = 0.0_wp; rmask(:,nxr+1:nxrg,:) = 0.0_wp
	2092	rmask(nysg:nys-1,:,:) = 0.0_wp; rmask(nyn+1:nyng,:,:) = 0.0_wp
[1]	2093
	2094	!
[51]	2095	!-- User-defined initializing actions. Check afterwards, if maximum number
[709]	2096	!-- of allowed timeseries is exceeded
[1]	2097	CALL user_init
	2098
[51]	2099	IF ( dots_num > dots_max ) THEN
[1788]	2100	WRITE( message_string, * ) 'number of time series quantities exceeds', &
	2101	' its maximum of dots_max = ', dots_max, &
[254]	2102	' &Please increase dots_max in modules.f90.'
	2103	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	2104	ENDIF
	2105
[1]	2106	!
	2107	!-- Input binary data file is not needed anymore. This line must be placed
	2108	!-- after call of user_init!
	2109	CALL close_file( 13 )
	2110
	2111	!
	2112	!-- Compute total sum of active mask grid points
[1738]	2113	!-- and the mean surface level height for each statistic region
[1]	2114	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	2115	!-- total domain
	2116	!-- ngp_3d: number of grid points of the total domain
[132]	2117	ngp_2dh_outer_l = 0
	2118	ngp_2dh_outer = 0
	2119	ngp_2dh_s_inner_l = 0
	2120	ngp_2dh_s_inner = 0
	2121	ngp_2dh_l = 0
	2122	ngp_2dh = 0
[1340]	2123	ngp_3d_inner_l = 0.0_wp
[132]	2124	ngp_3d_inner = 0
	2125	ngp_3d = 0
	2126	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	2127
[1738]	2128	mean_surface_level_height = 0.0_wp
	2129	mean_surface_level_height_l = 0.0_wp
	2130
[2232]	2131	!
	2132	!-- To do: New concept for these non-topography grid points!
[1]	2133	DO sr = 0, statistic_regions
	2134	DO i = nxl, nxr
	2135	DO j = nys, nyn
[1340]	2136	IF ( rmask(j,i,sr) == 1.0_wp ) THEN
[1]	2137	!
	2138	!-- All xy-grid points
	2139	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	2140	!
[2232]	2141	!-- Determine mean surface-level height. In case of downward-
	2142	!-- facing walls are present, more than one surface level exist.
	2143	!-- In this case, use the lowest surface-level height.
	2144	IF ( surf_def_h(0)%start_index(j,i) <= &
	2145	surf_def_h(0)%end_index(j,i) ) THEN
	2146	m = surf_def_h(0)%start_index(j,i)
	2147	k = surf_def_h(0)%k(m)
	2148	mean_surface_level_height_l(sr) = &
	2149	mean_surface_level_height_l(sr) + zw(k-1)
	2150	ENDIF
	2151	IF ( surf_lsm_h%start_index(j,i) <= &
	2152	surf_lsm_h%end_index(j,i) ) THEN
	2153	m = surf_lsm_h%start_index(j,i)
	2154	k = surf_lsm_h%k(m)
	2155	mean_surface_level_height_l(sr) = &
	2156	mean_surface_level_height_l(sr) + zw(k-1)
	2157	ENDIF
	2158	IF ( surf_usm_h%start_index(j,i) <= &
	2159	surf_usm_h%end_index(j,i) ) THEN
	2160	m = surf_usm_h%start_index(j,i)
	2161	k = surf_usm_h%k(m)
	2162	mean_surface_level_height_l(sr) = &
	2163	mean_surface_level_height_l(sr) + zw(k-1)
	2164	ENDIF
	2165
	2166	k_surf = k - 1
	2167
	2168	DO k = nzb, nzt+1
	2169	!
	2170	!-- xy-grid points above topography
	2171	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + &
	2172	MERGE( 1, 0, BTEST( wall_flags_0(k,j,i), 24 ) )
	2173
	2174	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + &
	2175	MERGE( 1, 0, BTEST( wall_flags_0(k,j,i), 22 ) )
	2176
[1]	2177	ENDDO
	2178	!
	2179	!-- All grid points of the total domain above topography
[2232]	2180	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + ( nz - k_surf + 2 )
	2181
	2182
	2183
[1]	2184	ENDIF
	2185	ENDDO
	2186	ENDDO
	2187	ENDDO
	2188
	2189	sr = statistic_regions + 1
	2190	#if defined( __parallel )
[622]	2191	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2192	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	2193	comm2d, ierr )
[622]	2194	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2195	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	2196	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	2197	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2198	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	2199	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	2200	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2201	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	2202	MPI_SUM, comm2d, ierr )
[485]	2203	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1738]	2204	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[1788]	2205	CALL MPI_ALLREDUCE( mean_surface_level_height_l(0), &
	2206	mean_surface_level_height(0), sr, MPI_REAL, &
[1738]	2207	MPI_SUM, comm2d, ierr )
	2208	mean_surface_level_height = mean_surface_level_height / REAL( ngp_2dh )
[1]	2209	#else
[132]	2210	ngp_2dh = ngp_2dh_l
	2211	ngp_2dh_outer = ngp_2dh_outer_l
	2212	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	2213	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1738]	2214	mean_surface_level_height = mean_surface_level_height_l / REAL( ngp_2dh_l )
[1]	2215	#endif
	2216
[560]	2217	ngp_3d = INT ( ngp_2dh, KIND = SELECTED_INT_KIND( 18 ) ) * &
	2218	INT ( (nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	2219
	2220	!
	2221	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	2222	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	2223	!-- the respective subdomain lie below the surface topography
[667]	2224	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
[1788]	2225	ngp_3d_inner = MAX( INT(1, KIND = SELECTED_INT_KIND( 18 )), &
[631]	2226	ngp_3d_inner(:) )
[667]	2227	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	2228
[1788]	2229	DEALLOCATE( mean_surface_level_height_l, ngp_2dh_l, ngp_2dh_outer_l, &
[1738]	2230	ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	2231
[1402]	2232	CALL location_message( 'leaving init_3d_model', .TRUE. )
[1]	2233
	2234	END SUBROUTINE init_3d_model

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