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init_3d_model.f90 @ 1484

Last change on this file since 1484 was 1484, checked in by kanani, 10 years ago

New:
---
Subroutine init_plant_canopy added to module plant_canopy_model_mod. (plant_canopy_model)
Alternative method for lad-profile construction added, also, new parameters added.
(header, package_parin, plant_canopy_model, read_var_list, write_var_list)
plant_canopy_model-dependency added to several subroutines. (Makefile)
New package/namelist canopy_par for canopy-related parameters added. (package_parin)

Changed:
---
Code structure of the plant canopy model changed, all canopy-model related code
combined to module plant_canopy_model_mod. (check_parameters, init_3d_model,
modules, timestep)
Module plant_canopy_model_mod added in USE-lists of some subroutines. (check_parameters,
header, init_3d_model, package_parin, read_var_list, user_init_plant_canopy, write_var_list)
Canopy initialization moved to new subroutine init_plant_canopy. (check_parameters,
init_3d_model, plant_canopy_model)
Calculation of canopy timestep-criterion removed, instead, the canopy
drag is now directly limited in the calculation of the canopy tendency terms.
(plant_canopy_model, timestep)
Some parameters renamed. (check_parameters, header, init_plant_canopy,
plant_canopy_model, read_var_list, write_var_list)
Unnecessary 3d-arrays removed. (init_plant_canopy, plant_canopy_model, user_init_plant_canopy)
Parameter checks regarding canopy initialization added. (check_parameters)
All canopy steering parameters moved from namelist inipar to canopy_par. (package_parin, parin)
Some redundant MPI communication removed. (init_plant_canopy)

Bugfix:
---
Missing KIND-attribute for REAL constant added. (check_parameters)
DO-WHILE-loop for lad-profile output restricted. (header)
Removed double-listing of use_upstream_for_tke in ONLY-list of module
control_parameters. (prognostic_equations)

Property svn:keywords set to Id

File size: 63.9 KB

Rev	Line
[1]	1	SUBROUTINE init_3d_model
	2
[1036]	3	!--------------------------------------------------------------------------------!
	4	! This file is part of PALM.
	5	!
	6	! PALM is free software: you can redistribute it and/or modify it under the terms
	7	! of the GNU General Public License as published by the Free Software Foundation,
	8	! either version 3 of the License, or (at your option) any later version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[1310]	17	! Copyright 1997-2014 Leibniz Universitaet Hannover
[1036]	18	!--------------------------------------------------------------------------------!
	19	!
[254]	20	! Current revisions:
[732]	21	! ------------------
[1484]	22	! Changes due to new module structure of the plant canopy model:
	23	! canopy-related initialization (e.g. lad and canopy_heat_flux) moved to new
	24	! subroutine init_plant_canopy within the module plant_canopy_model_mod,
	25	! call of subroutine init_plant_canopy added.
[1341]	26	!
[1054]	27	! Former revisions:
	28	! -----------------
	29	! $Id: init_3d_model.f90 1484 2014-10-21 10:53:05Z kanani $
	30	!
[1432]	31	! 1431 2014-07-15 14:47:17Z suehring
	32	! var_d added, in order to normalize spectra.
	33	!
[1430]	34	! 1429 2014-07-15 12:53:45Z knoop
	35	! Ensemble run capability added to parallel random number generator
	36	!
[1412]	37	! 1411 2014-05-16 18:01:51Z suehring
	38	! Initial horizontal velocity profiles were not set to zero at the first vertical
	39	! grid level in case of non-cyclic lateral boundary conditions.
	40	!
[1407]	41	! 1406 2014-05-16 13:47:01Z raasch
	42	! bugfix: setting of initial velocities at k=1 to zero not in case of a
	43	! no-slip boundary condition for uv
	44	!
[1403]	45	! 1402 2014-05-09 14:25:13Z raasch
	46	! location messages modified
	47	!
[1401]	48	! 1400 2014-05-09 14:03:54Z knoop
	49	! Parallel random number generator added
	50	!
[1385]	51	! 1384 2014-05-02 14:31:06Z raasch
	52	! location messages added
	53	!
[1362]	54	! 1361 2014-04-16 15:17:48Z hoffmann
	55	! tend_* removed
	56	! Bugfix: w_subs is not allocated anymore if it is already allocated
	57	!
[1360]	58	! 1359 2014-04-11 17:15:14Z hoffmann
	59	! module lpm_init_mod added to use statements, because lpm_init has become a
	60	! module
	61	!
[1354]	62	! 1353 2014-04-08 15:21:23Z heinze
	63	! REAL constants provided with KIND-attribute
	64	!
[1341]	65	! 1340 2014-03-25 19:45:13Z kanani
	66	! REAL constants defined as wp-kind
	67	!
[1323]	68	! 1322 2014-03-20 16:38:49Z raasch
	69	! REAL constants defined as wp-kind
	70	! module interfaces removed
	71	!
[1321]	72	! 1320 2014-03-20 08:40:49Z raasch
	73	! ONLY-attribute added to USE-statements,
	74	! kind-parameters added to all INTEGER and REAL declaration statements,
	75	! kinds are defined in new module kinds,
	76	! revision history before 2012 removed,
	77	! comment fields (!:) to be used for variable explanations added to
	78	! all variable declaration statements
	79	!
[1317]	80	! 1316 2014-03-17 07:44:59Z heinze
	81	! Bugfix: allocation of w_subs
	82	!
[1300]	83	! 1299 2014-03-06 13:15:21Z heinze
	84	! Allocate w_subs due to extension of large scale subsidence in combination
	85	! with large scale forcing data (LSF_DATA)
	86	!
[1242]	87	! 1241 2013-10-30 11:36:58Z heinze
	88	! Overwrite initial profiles in case of nudging
	89	! Inititialize shf and qsws in case of large_scale_forcing
	90	!
[1222]	91	! 1221 2013-09-10 08:59:13Z raasch
	92	! +rflags_s_inner in copyin statement, use copyin for most arrays instead of
	93	! copy
	94	!
[1213]	95	! 1212 2013-08-15 08:46:27Z raasch
	96	! array tri is allocated and included in data copy statement
	97	!
[1196]	98	! 1195 2013-07-01 12:27:57Z heinze
	99	! Bugfix: move allocation of ref_state to parin.f90 and read_var_list.f90
	100	!
[1182]	101	! 1179 2013-06-14 05:57:58Z raasch
	102	! allocate and set ref_state to be used in buoyancy terms
	103	!
[1172]	104	! 1171 2013-05-30 11:27:45Z raasch
	105	! diss array is allocated with full size if accelerator boards are used
	106	!
[1160]	107	! 1159 2013-05-21 11:58:22Z fricke
	108	! -bc_lr_dirneu, bc_lr_neudir, bc_ns_dirneu, bc_ns_neudir
	109	!
[1154]	110	! 1153 2013-05-10 14:33:08Z raasch
	111	! diss array is allocated with dummy elements even if it is not needed
[1171]	112	! (required by PGI 13.4 / CUDA 5.0)
[1154]	113	!
[1116]	114	! 1115 2013-03-26 18:16:16Z hoffmann
	115	! unused variables removed
	116	!
[1114]	117	! 1113 2013-03-10 02:48:14Z raasch
	118	! openACC directive modified
	119	!
[1112]	120	! 1111 2013-03-08 23:54:10Z raasch
	121	! openACC directives added for pres
	122	! array diss allocated only if required
	123	!
[1093]	124	! 1092 2013-02-02 11:24:22Z raasch
	125	! unused variables removed
	126	!
[1066]	127	! 1065 2012-11-22 17:42:36Z hoffmann
	128	! allocation of diss (dissipation rate) in case of turbulence = .TRUE. added
	129	!
[1054]	130	! 1053 2012-11-13 17:11:03Z hoffmann
[1053]	131	! allocation and initialisation of necessary data arrays for the two-moment
	132	! cloud physics scheme the two new prognostic equations (nr, qr):
	133	! +dr, lambda_r, mu_r, sed_, xr, s, sws, swst, , _p, t_m, _1, _2, _3,
	134	! +tend_*, prr
[979]	135	!
[1037]	136	! 1036 2012-10-22 13:43:42Z raasch
	137	! code put under GPL (PALM 3.9)
	138	!
[1033]	139	! 1032 2012-10-21 13:03:21Z letzel
	140	! save memory by not allocating pt_2 in case of neutral = .T.
	141	!
[1026]	142	! 1025 2012-10-07 16:04:41Z letzel
	143	! bugfix: swap indices of mask for ghost boundaries
	144	!
[1017]	145	! 1015 2012-09-27 09:23:24Z raasch
	146	! mask is set to zero for ghost boundaries
	147	!
[1011]	148	! 1010 2012-09-20 07:59:54Z raasch
	149	! cpp switch __nopointer added for pointer free version
	150	!
[1004]	151	! 1003 2012-09-14 14:35:53Z raasch
	152	! nxra,nyna, nzta replaced ny nxr, nyn, nzt
	153	!
[1002]	154	! 1001 2012-09-13 14:08:46Z raasch
	155	! all actions concerning leapfrog scheme removed
	156	!
[997]	157	! 996 2012-09-07 10:41:47Z raasch
	158	! little reformatting
	159	!
[979]	160	! 978 2012-08-09 08:28:32Z fricke
[978]	161	! outflow damping layer removed
	162	! roughness length for scalar quantites z0h added
	163	! damping zone for the potential temperatur in case of non-cyclic lateral
	164	! boundaries added
	165	! initialization of ptdf_x, ptdf_y
	166	! initialization of c_u_m, c_u_m_l, c_v_m, c_v_m_l, c_w_m, c_w_m_l
[708]	167	!
[850]	168	! 849 2012-03-15 10:35:09Z raasch
	169	! init_particles renamed lpm_init
	170	!
[826]	171	! 825 2012-02-19 03:03:44Z raasch
	172	! wang_collision_kernel renamed wang_kernel
	173	!
[1]	174	! Revision 1.1 1998/03/09 16:22:22 raasch
	175	! Initial revision
	176	!
	177	!
	178	! Description:
	179	! ------------
	180	! Allocation of arrays and initialization of the 3D model via
	181	! a) pre-run the 1D model
	182	! or
	183	! b) pre-set constant linear profiles
	184	! or
	185	! c) read values of a previous run
	186	!------------------------------------------------------------------------------!
	187
[667]	188	USE advec_ws
[1320]	189
[1]	190	USE arrays_3d
[1320]	191
	192	USE cloud_parameters, &
	193	ONLY: nc_const, precipitation_amount, precipitation_rate, prr
	194
	195	USE constants, &
	196	ONLY: pi
	197
[1]	198	USE control_parameters
[1320]	199
	200	USE grid_variables, &
	201	ONLY: dx, dy
	202
[1]	203	USE indices
[1359]	204
[1429]	205	USE lpm_init_mod, &
[1359]	206	ONLY: lpm_init
[1320]	207
	208	USE kinds
	209
[1241]	210	USE ls_forcing_mod
[1320]	211
	212	USE model_1d, &
	213	ONLY: e1d, kh1d, km1d, l1d, rif1d, u1d, us1d, usws1d, v1d, vsws1d
	214
[51]	215	USE netcdf_control
[1320]	216
	217	USE particle_attributes, &
	218	ONLY: particle_advection, use_sgs_for_particles, wang_kernel
	219
[1]	220	USE pegrid
[1320]	221
[1484]	222	USE plant_canopy_model_mod, &
	223	ONLY: init_plant_canopy, plant_canopy
	224
[1320]	225	USE random_function_mod
	226
[1400]	227	USE random_generator_parallel, &
	228	ONLY: random_number_parallel, random_seed_parallel, random_dummy, &
	229	id_random_array, seq_random_array
	230
[1320]	231	USE statistics, &
	232	ONLY: hom, hom_sum, pr_palm, rmask, spectrum_x, spectrum_y, &
	233	statistic_regions, sums, sums_divnew_l, sums_divold_l, sums_l, &
	234	sums_l_l, sums_up_fraction_l, sums_wsts_bc_l, ts_value, &
[1431]	235	var_d, weight_pres, weight_substep
[1320]	236
	237	USE transpose_indices
[1]	238
	239	IMPLICIT NONE
	240
[1320]	241	INTEGER(iwp) :: i !:
	242	INTEGER(iwp) :: ind_array(1) !:
	243	INTEGER(iwp) :: j !:
	244	INTEGER(iwp) :: k !:
	245	INTEGER(iwp) :: sr !:
[1]	246
[1320]	247	INTEGER(iwp), DIMENSION(:), ALLOCATABLE :: ngp_2dh_l !:
[1]	248
[1320]	249	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_outer_l !:
	250	INTEGER(iwp), DIMENSION(:,:), ALLOCATABLE :: ngp_2dh_s_inner_l !:
[1]	251
[1320]	252	REAL(wp), DIMENSION(1:2) :: volume_flow_area_l !:
	253	REAL(wp), DIMENSION(1:2) :: volume_flow_initial_l !:
[1]	254
[1320]	255	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_l !:
	256	REAL(wp), DIMENSION(:), ALLOCATABLE :: ngp_3d_inner_tmp !:
[1]	257
[485]	258
[1402]	259	CALL location_message( 'allocating arrays', .FALSE. )
[1]	260	!
	261	!-- Allocate arrays
	262	ALLOCATE( ngp_2dh(0:statistic_regions), ngp_2dh_l(0:statistic_regions), &
	263	ngp_3d(0:statistic_regions), &
	264	ngp_3d_inner(0:statistic_regions), &
	265	ngp_3d_inner_l(0:statistic_regions), &
[485]	266	ngp_3d_inner_tmp(0:statistic_regions), &
[1]	267	sums_divnew_l(0:statistic_regions), &
	268	sums_divold_l(0:statistic_regions) )
[1195]	269	ALLOCATE( dp_smooth_factor(nzb:nzt), rdf(nzb+1:nzt), rdf_sc(nzb+1:nzt) )
[143]	270	ALLOCATE( ngp_2dh_outer(nzb:nzt+1,0:statistic_regions), &
[1]	271	ngp_2dh_outer_l(nzb:nzt+1,0:statistic_regions), &
[132]	272	ngp_2dh_s_inner(nzb:nzt+1,0:statistic_regions), &
	273	ngp_2dh_s_inner_l(nzb:nzt+1,0:statistic_regions), &
[996]	274	rmask(nysg:nyng,nxlg:nxrg,0:statistic_regions), &
[87]	275	sums(nzb:nzt+1,pr_palm+max_pr_user), &
	276	sums_l(nzb:nzt+1,pr_palm+max_pr_user,0:threads_per_task-1), &
[1]	277	sums_l_l(nzb:nzt+1,0:statistic_regions,0:threads_per_task-1), &
	278	sums_up_fraction_l(10,3,0:statistic_regions), &
[48]	279	sums_wsts_bc_l(nzb:nzt+1,0:statistic_regions), &
[394]	280	ts_value(dots_max,0:statistic_regions) )
[978]	281	ALLOCATE( ptdf_x(nxlg:nxrg), ptdf_y(nysg:nyng) )
[1]	282
[1001]	283	ALLOCATE( rif(nysg:nyng,nxlg:nxrg), shf(nysg:nyng,nxlg:nxrg), &
	284	ts(nysg:nyng,nxlg:nxrg), tswst(nysg:nyng,nxlg:nxrg), &
	285	us(nysg:nyng,nxlg:nxrg), usws(nysg:nyng,nxlg:nxrg), &
	286	uswst(nysg:nyng,nxlg:nxrg), vsws(nysg:nyng,nxlg:nxrg), &
	287	vswst(nysg:nyng,nxlg:nxrg), z0(nysg:nyng,nxlg:nxrg), &
[978]	288	z0h(nysg:nyng,nxlg:nxrg) )
[1]	289
[1010]	290	ALLOCATE( d(nzb+1:nzt,nys:nyn,nxl:nxr), &
	291	kh(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	292	km(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	293	p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	294	tend(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	295
	296	#if defined( __nopointer )
	297	ALLOCATE( e(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	298	e_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	299	pt(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	300	pt_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	301	u(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	302	u_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	303	v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	304	v_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	305	w(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	306	w_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	307	te_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	308	tpt_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	309	tu_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	310	tv_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	311	tw_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	312	#else
	313	ALLOCATE( e_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	314	e_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	315	e_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	316	pt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	317	pt_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	318	u_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	319	u_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	320	u_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	321	v_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	322	v_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	323	v_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	324	w_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	325	w_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	326	w_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1032]	327	IF ( .NOT. neutral ) THEN
	328	ALLOCATE( pt_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	329	ENDIF
[1010]	330	#endif
	331
[673]	332	!
[707]	333	!-- Following array is required for perturbation pressure within the iterative
	334	!-- pressure solvers. For the multistep schemes (Runge-Kutta), array p holds
	335	!-- the weighted average of the substeps and cannot be used in the Poisson
	336	!-- solver.
	337	IF ( psolver == 'sor' ) THEN
	338	ALLOCATE( p_loc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	339	ELSEIF ( psolver == 'multigrid' ) THEN
	340	!
	341	!-- For performance reasons, multigrid is using one ghost layer only
	342	ALLOCATE( p_loc(nzb:nzt+1,nys-1:nyn+1,nxl-1:nxr+1) )
[673]	343	ENDIF
[1]	344
[1111]	345	!
	346	!-- Array for storing constant coeffficients of the tridiagonal solver
	347	IF ( psolver == 'poisfft' ) THEN
[1212]	348	ALLOCATE( tri(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1,2) )
[1111]	349	ALLOCATE( tric(nxl_z:nxr_z,nys_z:nyn_z,0:nz-1) )
	350	ENDIF
	351
[75]	352	IF ( humidity .OR. passive_scalar ) THEN
[1]	353	!
[75]	354	!-- 2D-humidity/scalar arrays
[1001]	355	ALLOCATE ( qs(nysg:nyng,nxlg:nxrg), &
	356	qsws(nysg:nyng,nxlg:nxrg), &
	357	qswst(nysg:nyng,nxlg:nxrg) )
[1]	358
	359	!
[75]	360	!-- 3D-humidity/scalar arrays
[1010]	361	#if defined( __nopointer )
	362	ALLOCATE( q(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	363	q_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	364	tq_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	365	#else
[667]	366	ALLOCATE( q_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	367	q_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	368	q_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	369	#endif
[1]	370
	371	!
[75]	372	!-- 3D-arrays needed for humidity only
	373	IF ( humidity ) THEN
[1010]	374	#if defined( __nopointer )
	375	ALLOCATE( vpt(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	376	#else
[667]	377	ALLOCATE( vpt_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	378	#endif
[1]	379
	380	IF ( cloud_physics ) THEN
[1053]	381
[1]	382	!
	383	!-- Liquid water content
[1010]	384	#if defined( __nopointer )
	385	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	386	#else
[667]	387	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1010]	388	#endif
[72]	389	!
	390	!-- Precipitation amount and rate (only needed if output is switched)
[667]	391	ALLOCATE( precipitation_amount(nysg:nyng,nxlg:nxrg), &
	392	precipitation_rate(nysg:nyng,nxlg:nxrg) )
[1053]	393
	394	IF ( icloud_scheme == 0 ) THEN
	395	!
[1115]	396	!-- 1D-arrays
	397	ALLOCATE ( nc_1d(nzb:nzt+1), pt_1d(nzb:nzt+1), &
	398	q_1d(nzb:nzt+1), qc_1d(nzb:nzt+1) )
[1053]	399	!
[1115]	400	!-- 3D-cloud water content
[1053]	401	#if defined( __nopointer )
[1115]	402	ALLOCATE( qc(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	403	#else
[1115]	404	ALLOCATE( qc_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1053]	405	#endif
[1115]	406
	407	IF ( precipitation ) THEN
[1053]	408	!
[1115]	409	!-- 1D-arrays
	410	ALLOCATE ( nr_1d(nzb:nzt+1), qr_1d(nzb:nzt+1) )
[1361]	411
[1115]	412	!
	413	!-- 2D-rain water content and rain drop concentration arrays
	414	ALLOCATE ( qrs(nysg:nyng,nxlg:nxrg), &
	415	qrsws(nysg:nyng,nxlg:nxrg), &
	416	qrswst(nysg:nyng,nxlg:nxrg), &
	417	nrs(nysg:nyng,nxlg:nxrg), &
	418	nrsws(nysg:nyng,nxlg:nxrg), &
	419	nrswst(nysg:nyng,nxlg:nxrg) )
	420	!
	421	!-- 3D-rain water content, rain drop concentration arrays
	422	#if defined( __nopointer )
	423	ALLOCATE( nr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	424	nr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	425	qr(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	426	qr_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	427	tnr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	428	tqr_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	429	#else
	430	ALLOCATE( nr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	431	nr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	432	nr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	433	qr_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	434	qr_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	435	qr_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	436	#endif
	437	!
	438	!-- 3d-precipitation rate
[1053]	439	ALLOCATE( prr(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	440	ENDIF
	441
	442	ENDIF
[1]	443	ENDIF
	444
	445	IF ( cloud_droplets ) THEN
	446	!
[1010]	447	!-- Liquid water content, change in liquid water content
	448	#if defined( __nopointer )
	449	ALLOCATE ( ql(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	450	ql_c(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	451	#else
[667]	452	ALLOCATE ( ql_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[1010]	453	ql_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	454	#endif
	455	!
	456	!-- Real volume of particles (with weighting), volume of particles
	457	ALLOCATE ( ql_v(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
[667]	458	ql_vp(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	459	ENDIF
	460
	461	ENDIF
	462
	463	ENDIF
	464
[94]	465	IF ( ocean ) THEN
[1001]	466	ALLOCATE( saswsb(nysg:nyng,nxlg:nxrg), &
	467	saswst(nysg:nyng,nxlg:nxrg) )
[1010]	468	#if defined( __nopointer )
	469	ALLOCATE( prho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	470	rho(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	471	sa(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	472	sa_p(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	473	tsa_m(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	474	#else
[667]	475	ALLOCATE( prho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	476	rho_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	477	sa_1(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	478	sa_2(nzb:nzt+1,nysg:nyng,nxlg:nxrg), &
	479	sa_3(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[388]	480	prho => prho_1
	481	rho => rho_1 ! routines calc_mean_profile and diffusion_e require
	482	! density to be apointer
[1010]	483	#endif
[108]	484	IF ( humidity_remote ) THEN
[667]	485	ALLOCATE( qswst_remote(nysg:nyng,nxlg:nxrg))
[1340]	486	qswst_remote = 0.0_wp
[108]	487	ENDIF
[94]	488	ENDIF
	489
[1]	490	!
	491	!-- 3D-array for storing the dissipation, needed for calculating the sgs
	492	!-- particle velocities
[1171]	493	IF ( use_sgs_for_particles .OR. wang_kernel .OR. turbulence .OR. &
	494	num_acc_per_node > 0 ) THEN
[1153]	495	ALLOCATE( diss(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
[1]	496	ENDIF
	497
[1340]	498	IF ( dt_dosp /= 9999999.9_wp ) THEN
[1]	499	ALLOCATE( spectrum_x( 1:nx/2, 1:10, 1:10 ), &
	500	spectrum_y( 1:ny/2, 1:10, 1:10 ) )
[1340]	501	spectrum_x = 0.0_wp
	502	spectrum_y = 0.0_wp
[1431]	503
	504	ALLOCATE( var_d(nzb:nzt+1) )
	505	var_d = 0.0_wp
[1]	506	ENDIF
	507
	508	!
[1299]	509	!-- 1D-array for large scale subsidence velocity
[1361]	510	IF ( .NOT. ALLOCATED( w_subs ) ) THEN
	511	ALLOCATE ( w_subs(nzb:nzt+1) )
	512	w_subs = 0.0_wp
	513	ENDIF
[1299]	514
	515	!
[1400]	516	!-- ID-array and state-space-array for the parallel random number generator
	517	IF ( random_generator == 'random-parallel' ) THEN
	518	ALLOCATE ( seq_random_array(5,nysg:nyng,nxlg:nxrg) )
	519	ALLOCATE ( id_random_array(0:ny,0:nx) )
	520	seq_random_array = 0
	521	id_random_array = 0
	522	ENDIF
	523
	524	!
[51]	525	!-- 4D-array for storing the Rif-values at vertical walls
	526	IF ( topography /= 'flat' ) THEN
[667]	527	ALLOCATE( rif_wall(nzb:nzt+1,nysg:nyng,nxlg:nxrg,1:4) )
[1340]	528	rif_wall = 0.0_wp
[51]	529	ENDIF
	530
	531	!
[106]	532	!-- Arrays to store velocity data from t-dt and the phase speeds which
	533	!-- are needed for radiation boundary conditions
[73]	534	IF ( outflow_l ) THEN
[667]	535	ALLOCATE( u_m_l(nzb:nzt+1,nysg:nyng,1:2), &
	536	v_m_l(nzb:nzt+1,nysg:nyng,0:1), &
	537	w_m_l(nzb:nzt+1,nysg:nyng,0:1) )
[73]	538	ENDIF
	539	IF ( outflow_r ) THEN
[667]	540	ALLOCATE( u_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	541	v_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx), &
	542	w_m_r(nzb:nzt+1,nysg:nyng,nx-1:nx) )
[73]	543	ENDIF
[106]	544	IF ( outflow_l .OR. outflow_r ) THEN
[667]	545	ALLOCATE( c_u(nzb:nzt+1,nysg:nyng), c_v(nzb:nzt+1,nysg:nyng), &
	546	c_w(nzb:nzt+1,nysg:nyng) )
[106]	547	ENDIF
[73]	548	IF ( outflow_s ) THEN
[667]	549	ALLOCATE( u_m_s(nzb:nzt+1,0:1,nxlg:nxrg), &
	550	v_m_s(nzb:nzt+1,1:2,nxlg:nxrg), &
	551	w_m_s(nzb:nzt+1,0:1,nxlg:nxrg) )
[73]	552	ENDIF
	553	IF ( outflow_n ) THEN
[667]	554	ALLOCATE( u_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	555	v_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg), &
	556	w_m_n(nzb:nzt+1,ny-1:ny,nxlg:nxrg) )
[73]	557	ENDIF
[106]	558	IF ( outflow_s .OR. outflow_n ) THEN
[667]	559	ALLOCATE( c_u(nzb:nzt+1,nxlg:nxrg), c_v(nzb:nzt+1,nxlg:nxrg), &
	560	c_w(nzb:nzt+1,nxlg:nxrg) )
[106]	561	ENDIF
[996]	562	IF ( outflow_l .OR. outflow_r .OR. outflow_s .OR. outflow_n ) THEN
[978]	563	ALLOCATE( c_u_m_l(nzb:nzt+1), c_v_m_l(nzb:nzt+1), c_w_m_l(nzb:nzt+1) )
	564	ALLOCATE( c_u_m(nzb:nzt+1), c_v_m(nzb:nzt+1), c_w_m(nzb:nzt+1) )
	565	ENDIF
[73]	566
[978]	567
[1010]	568	#if ! defined( __nopointer )
[73]	569	!
[1]	570	!-- Initial assignment of the pointers
[1001]	571	e => e_1; e_p => e_2; te_m => e_3
[1032]	572	IF ( .NOT. neutral ) THEN
	573	pt => pt_1; pt_p => pt_2; tpt_m => pt_3
	574	ELSE
	575	pt => pt_1; pt_p => pt_1; tpt_m => pt_3
	576	ENDIF
[1001]	577	u => u_1; u_p => u_2; tu_m => u_3
	578	v => v_1; v_p => v_2; tv_m => v_3
	579	w => w_1; w_p => w_2; tw_m => w_3
[1]	580
[1001]	581	IF ( humidity .OR. passive_scalar ) THEN
	582	q => q_1; q_p => q_2; tq_m => q_3
[1053]	583	IF ( humidity ) THEN
	584	vpt => vpt_1
	585	IF ( cloud_physics ) THEN
	586	ql => ql_1
	587	IF ( icloud_scheme == 0 ) THEN
[1115]	588	qc => qc_1
	589	IF ( precipitation ) THEN
	590	qr => qr_1; qr_p => qr_2; tqr_m => qr_3
	591	nr => nr_1; nr_p => nr_2; tnr_m => nr_3
	592	ENDIF
[1053]	593	ENDIF
	594	ENDIF
	595	ENDIF
[1001]	596	IF ( cloud_droplets ) THEN
	597	ql => ql_1
	598	ql_c => ql_2
[1]	599	ENDIF
[1001]	600	ENDIF
[1]	601
[1001]	602	IF ( ocean ) THEN
	603	sa => sa_1; sa_p => sa_2; tsa_m => sa_3
	604	ENDIF
[1010]	605	#endif
[1]	606
	607	!
[709]	608	!-- Allocate arrays containing the RK coefficient for calculation of
	609	!-- perturbation pressure and turbulent fluxes. At this point values are
	610	!-- set for pressure calculation during initialization (where no timestep
	611	!-- is done). Further below the values needed within the timestep scheme
	612	!-- will be set.
	613	ALLOCATE( weight_substep(1:intermediate_timestep_count_max), &
[673]	614	weight_pres(1:intermediate_timestep_count_max) )
[1340]	615	weight_substep = 1.0_wp
	616	weight_pres = 1.0_wp
[709]	617	intermediate_timestep_count = 1 ! needed when simulated_time = 0.0
[673]	618
[1402]	619	CALL location_message( 'finished', .TRUE. )
[673]	620	!
[1]	621	!-- Initialize model variables
[147]	622	IF ( TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
[328]	623	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
[1]	624	!
	625	!-- First model run of a possible job queue.
	626	!-- Initial profiles of the variables must be computes.
	627	IF ( INDEX( initializing_actions, 'set_1d-model_profiles' ) /= 0 ) THEN
[1384]	628
[1402]	629	CALL location_message( 'initializing with 1D model profiles', .FALSE. )
[1]	630	!
	631	!-- Use solutions of the 1D model as initial profiles,
	632	!-- start 1D model
	633	CALL init_1d_model
	634	!
	635	!-- Transfer initial profiles to the arrays of the 3D model
[667]	636	DO i = nxlg, nxrg
	637	DO j = nysg, nyng
[1]	638	e(:,j,i) = e1d
	639	kh(:,j,i) = kh1d
	640	km(:,j,i) = km1d
	641	pt(:,j,i) = pt_init
	642	u(:,j,i) = u1d
	643	v(:,j,i) = v1d
	644	ENDDO
	645	ENDDO
	646
[75]	647	IF ( humidity .OR. passive_scalar ) THEN
[667]	648	DO i = nxlg, nxrg
	649	DO j = nysg, nyng
[1]	650	q(:,j,i) = q_init
	651	ENDDO
	652	ENDDO
[1353]	653	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
[1115]	654	precipitation ) THEN
[1053]	655	DO i = nxlg, nxrg
	656	DO j = nysg, nyng
[1340]	657	qr(:,j,i) = 0.0_wp
	658	nr(:,j,i) = 0.0_wp
[1053]	659	ENDDO
	660	ENDDO
[1115]	661	!
	662	!-- Initialze nc_1d with default value
	663	nc_1d(:) = nc_const
	664
[1053]	665	ENDIF
[1]	666	ENDIF
	667
	668	IF ( .NOT. constant_diffusion ) THEN
[667]	669	DO i = nxlg, nxrg
	670	DO j = nysg, nyng
[1]	671	e(:,j,i) = e1d
	672	ENDDO
	673	ENDDO
	674	!
	675	!-- Store initial profiles for output purposes etc.
	676	hom(:,1,25,:) = SPREAD( l1d, 2, statistic_regions+1 )
	677
	678	IF ( prandtl_layer ) THEN
	679	rif = rif1d(nzb+1)
[1340]	680	ts = 0.0_wp ! could actually be computed more accurately in the
	681	! 1D model. Update when opportunity arises.
[1]	682	us = us1d
	683	usws = usws1d
	684	vsws = vsws1d
	685	ELSE
[1340]	686	ts = 0.0_wp ! must be set, because used in
	687	rif = 0.0_wp ! flowste
	688	us = 0.0_wp
	689	usws = 0.0_wp
	690	vsws = 0.0_wp
[1]	691	ENDIF
	692
	693	ELSE
[1340]	694	e = 0.0_wp ! must be set, because used in
	695	rif = 0.0_wp ! flowste
	696	ts = 0.0_wp
	697	us = 0.0_wp
	698	usws = 0.0_wp
	699	vsws = 0.0_wp
[1]	700	ENDIF
[102]	701	uswst = top_momentumflux_u
	702	vswst = top_momentumflux_v
[1]	703
	704	!
	705	!-- In every case qs = 0.0 (see also pt)
	706	!-- This could actually be computed more accurately in the 1D model.
	707	!-- Update when opportunity arises!
[1053]	708	IF ( humidity .OR. passive_scalar ) THEN
[1340]	709	qs = 0.0_wp
[1353]	710	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
[1115]	711	precipitation ) THEN
[1340]	712	qrs = 0.0_wp
	713	nrs = 0.0_wp
[1053]	714	ENDIF
	715	ENDIF
[1]	716
	717	!
	718	!-- inside buildings set velocities back to zero
	719	IF ( topography /= 'flat' ) THEN
	720	DO i = nxl-1, nxr+1
	721	DO j = nys-1, nyn+1
[1340]	722	u(nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	723	v(nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
[1]	724	ENDDO
	725	ENDDO
[667]	726
[1]	727	!
	728	!-- WARNING: The extra boundary conditions set after running the
	729	!-- ------- 1D model impose an error on the divergence one layer
	730	!-- below the topography; need to correct later
	731	!-- ATTENTION: Provisional correction for Piacsek & Williams
	732	!-- --------- advection scheme: keep u and v zero one layer below
	733	!-- the topography.
[667]	734	IF ( ibc_uv_b == 1 ) THEN
	735	!
[1]	736	!-- Neumann condition
	737	DO i = nxl-1, nxr+1
	738	DO j = nys-1, nyn+1
	739	IF ( nzb_u_inner(j,i) == 0 ) u(0,j,i) = u(1,j,i)
	740	IF ( nzb_v_inner(j,i) == 0 ) v(0,j,i) = v(1,j,i)
	741	ENDDO
	742	ENDDO
	743
	744	ENDIF
	745
	746	ENDIF
	747
[1402]	748	CALL location_message( 'finished', .TRUE. )
[1384]	749
[1]	750	ELSEIF ( INDEX(initializing_actions, 'set_constant_profiles') /= 0 ) &
	751	THEN
[1241]	752
[1402]	753	CALL location_message( 'initializing with constant profiles', .FALSE. )
[1]	754	!
[1241]	755	!-- Overwrite initial profiles in case of nudging
	756	IF ( nudging ) THEN
	757	pt_init = ptnudge(:,1)
	758	u_init = unudge(:,1)
	759	v_init = vnudge(:,1)
	760	IF ( humidity .OR. passive_scalar ) THEN
	761	q_init = qnudge(:,1)
	762	ENDIF
	763
	764	WRITE( message_string, * ) 'Initial profiles of u, v and ', &
	765	'scalars from NUDGING_DATA are used.'
	766	CALL message( 'init_3d_model', 'PA0370', 0, 0, 0, 6, 0 )
	767	ENDIF
	768
	769	!
[1]	770	!-- Use constructed initial profiles (velocity constant with height,
	771	!-- temperature profile with constant gradient)
[667]	772	DO i = nxlg, nxrg
	773	DO j = nysg, nyng
[1]	774	pt(:,j,i) = pt_init
	775	u(:,j,i) = u_init
	776	v(:,j,i) = v_init
	777	ENDDO
	778	ENDDO
[75]	779
[1]	780	!
[292]	781	!-- Set initial horizontal velocities at the lowest computational grid
	782	!-- levels to zero in order to avoid too small time steps caused by the
	783	!-- diffusion limit in the initial phase of a run (at k=1, dz/2 occurs
	784	!-- in the limiting formula!). The original values are stored to be later
	785	!-- used for volume flow control.
[1411]	786	IF ( ibc_uv_b /= 1 .AND. ( .NOT. bc_lr_dirrad .AND. &
	787	.NOT. bc_lr_raddir .AND. &
	788	.NOT. bc_ns_dirrad .AND. &
	789	.NOT. bc_ns_raddir ) ) THEN
[1406]	790	DO i = nxlg, nxrg
	791	DO j = nysg, nyng
	792	u(nzb:nzb_u_inner(j,i)+1,j,i) = 0.0_wp
	793	v(nzb:nzb_v_inner(j,i)+1,j,i) = 0.0_wp
	794	ENDDO
[1]	795	ENDDO
[1406]	796	ENDIF
[1]	797
[75]	798	IF ( humidity .OR. passive_scalar ) THEN
[667]	799	DO i = nxlg, nxrg
	800	DO j = nysg, nyng
[1]	801	q(:,j,i) = q_init
	802	ENDDO
	803	ENDDO
[1115]	804	IF ( cloud_physics .AND. icloud_scheme == 0 ) THEN
	805	!
	806	!-- Initialze nc_1d with default value
	807	nc_1d(:) = nc_const
	808
	809	IF ( precipitation ) THEN
	810	DO i = nxlg, nxrg
	811	DO j = nysg, nyng
[1340]	812	qr(:,j,i) = 0.0_wp
	813	nr(:,j,i) = 0.0_wp
[1115]	814	ENDDO
[1053]	815	ENDDO
[1115]	816	ENDIF
	817
[1053]	818	ENDIF
[1]	819	ENDIF
	820
[94]	821	IF ( ocean ) THEN
[667]	822	DO i = nxlg, nxrg
	823	DO j = nysg, nyng
[94]	824	sa(:,j,i) = sa_init
	825	ENDDO
	826	ENDDO
	827	ENDIF
[1]	828
	829	IF ( constant_diffusion ) THEN
	830	km = km_constant
	831	kh = km / prandtl_number
[1340]	832	e = 0.0_wp
	833	ELSEIF ( e_init > 0.0_wp ) THEN
[108]	834	DO k = nzb+1, nzt
[1340]	835	km(k,:,:) = 0.1_wp * l_grid(k) * SQRT( e_init )
[108]	836	ENDDO
	837	km(nzb,:,:) = km(nzb+1,:,:)
	838	km(nzt+1,:,:) = km(nzt,:,:)
	839	kh = km / prandtl_number
	840	e = e_init
[1]	841	ELSE
[108]	842	IF ( .NOT. ocean ) THEN
[1340]	843	kh = 0.01_wp ! there must exist an initial diffusion, because
	844	km = 0.01_wp ! otherwise no TKE would be produced by the
[108]	845	! production terms, as long as not yet
	846	! e = (u/cm)*2 at k=nzb+1
	847	ELSE
[1340]	848	kh = 0.00001_wp
	849	km = 0.00001_wp
[108]	850	ENDIF
[1340]	851	e = 0.0_wp
[1]	852	ENDIF
[1340]	853	rif = 0.0_wp
	854	ts = 0.0_wp
	855	us = 0.0_wp
	856	usws = 0.0_wp
[102]	857	uswst = top_momentumflux_u
[1340]	858	vsws = 0.0_wp
[102]	859	vswst = top_momentumflux_v
[1340]	860	IF ( humidity .OR. passive_scalar ) qs = 0.0_wp
[1]	861
	862	!
	863	!-- Compute initial temperature field and other constants used in case
	864	!-- of a sloping surface
	865	IF ( sloping_surface ) CALL init_slope
	866
[1402]	867	CALL location_message( 'finished', .TRUE. )
[1384]	868
[46]	869	ELSEIF ( INDEX(initializing_actions, 'by_user') /= 0 ) &
	870	THEN
[1384]	871
[1402]	872	CALL location_message( 'initializing by user', .FALSE. )
[46]	873	!
	874	!-- Initialization will completely be done by the user
	875	CALL user_init_3d_model
	876
[1402]	877	CALL location_message( 'finished', .TRUE. )
[1384]	878
[1]	879	ENDIF
[1384]	880
[1402]	881	CALL location_message( 'initializing statistics, boundary conditions, etc.', &
	882	.FALSE. )
[1384]	883
[667]	884	!
	885	!-- Bottom boundary
	886	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2 ) THEN
[1340]	887	u(nzb,:,:) = 0.0_wp
	888	v(nzb,:,:) = 0.0_wp
[667]	889	ENDIF
[1]	890
	891	!
[151]	892	!-- Apply channel flow boundary condition
[132]	893	IF ( TRIM( bc_uv_t ) == 'dirichlet_0' ) THEN
[1340]	894	u(nzt+1,:,:) = 0.0_wp
	895	v(nzt+1,:,:) = 0.0_wp
[132]	896	ENDIF
	897
	898	!
[1]	899	!-- Calculate virtual potential temperature
[1340]	900	IF ( humidity ) vpt = pt * ( 1.0_wp + 0.61_wp * q )
[1]	901
	902	!
	903	!-- Store initial profiles for output purposes etc.
	904	hom(:,1,5,:) = SPREAD( u(:,nys,nxl), 2, statistic_regions+1 )
	905	hom(:,1,6,:) = SPREAD( v(:,nys,nxl), 2, statistic_regions+1 )
[667]	906	IF ( ibc_uv_b == 0 .OR. ibc_uv_b == 2) THEN
[1340]	907	hom(nzb,1,5,:) = 0.0_wp
	908	hom(nzb,1,6,:) = 0.0_wp
[1]	909	ENDIF
	910	hom(:,1,7,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	911	hom(:,1,23,:) = SPREAD( km(:,nys,nxl), 2, statistic_regions+1 )
	912	hom(:,1,24,:) = SPREAD( kh(:,nys,nxl), 2, statistic_regions+1 )
	913
[97]	914	IF ( ocean ) THEN
	915	!
	916	!-- Store initial salinity profile
	917	hom(:,1,26,:) = SPREAD( sa(:,nys,nxl), 2, statistic_regions+1 )
	918	ENDIF
[1]	919
[75]	920	IF ( humidity ) THEN
[1]	921	!
	922	!-- Store initial profile of total water content, virtual potential
	923	!-- temperature
	924	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	925	hom(:,1,29,:) = SPREAD( vpt(:,nys,nxl), 2, statistic_regions+1 )
	926	IF ( cloud_physics .OR. cloud_droplets ) THEN
	927	!
	928	!-- Store initial profile of specific humidity and potential
	929	!-- temperature
	930	hom(:,1,27,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	931	hom(:,1,28,:) = SPREAD( pt(:,nys,nxl), 2, statistic_regions+1 )
	932	ENDIF
	933	ENDIF
	934
	935	IF ( passive_scalar ) THEN
	936	!
	937	!-- Store initial scalar profile
	938	hom(:,1,26,:) = SPREAD( q(:,nys,nxl), 2, statistic_regions+1 )
	939	ENDIF
	940
	941	!
[1400]	942	!-- Initialize the random number generators (from numerical recipes)
	943	CALL random_function_ini
[1429]	944
[1400]	945	IF ( random_generator == 'random-parallel' ) THEN
[1429]	946	!-- Asigning an ID to every vertical gridpoint column
	947	!-- dependig on the ensemble run number.
	948	random_dummy=1
[1400]	949	DO j=0,ny
	950	DO i=0,nx
[1429]	951	id_random_array(j,i) = random_dummy + 1E6 * ( ensemble_member_nr - 1000 )
	952	random_dummy = random_dummy + 1
[1400]	953	END DO
	954	ENDDO
[1429]	955	!-- Initializing with random_seed_parallel for every vertical
	956	!-- gridpoint column.
	957	random_dummy=0
[1400]	958	DO j = nysg, nyng
	959	DO i = nxlg, nxrg
	960	CALL random_seed_parallel (random_sequence=id_random_array(j, i))
	961	CALL random_number_parallel (random_dummy)
	962	CALL random_seed_parallel (get=seq_random_array(:, j, i))
	963	END DO
	964	ENDDO
	965	ENDIF
	966
	967	!
[19]	968	!-- Initialize fluxes at bottom surface
[1]	969	IF ( use_surface_fluxes ) THEN
	970
	971	IF ( constant_heatflux ) THEN
	972	!
	973	!-- Heat flux is prescribed
	974	IF ( random_heatflux ) THEN
	975	CALL disturb_heatflux
	976	ELSE
	977	shf = surface_heatflux
	978	!
[1241]	979	!-- Initialize shf with data from external file LSF_DATA
	980	IF ( large_scale_forcing .AND. lsf_surf ) THEN
	981	CALL ls_forcing_surf ( simulated_time )
	982	ENDIF
	983
	984	!
[1]	985	!-- Over topography surface_heatflux is replaced by wall_heatflux(0)
	986	IF ( TRIM( topography ) /= 'flat' ) THEN
[667]	987	DO i = nxlg, nxrg
	988	DO j = nysg, nyng
[1]	989	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	990	shf(j,i) = wall_heatflux(0)
	991	ENDIF
	992	ENDDO
	993	ENDDO
	994	ENDIF
	995	ENDIF
	996	ENDIF
	997
	998	!
	999	!-- Determine the near-surface water flux
[75]	1000	IF ( humidity .OR. passive_scalar ) THEN
[1115]	1001	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1002	precipitation ) THEN
[1340]	1003	qrsws = 0.0_wp
	1004	nrsws = 0.0_wp
[1053]	1005	ENDIF
[1]	1006	IF ( constant_waterflux ) THEN
	1007	qsws = surface_waterflux
[407]	1008	!
	1009	!-- Over topography surface_waterflux is replaced by
	1010	!-- wall_humidityflux(0)
	1011	IF ( TRIM( topography ) /= 'flat' ) THEN
	1012	wall_qflux = wall_humidityflux
[667]	1013	DO i = nxlg, nxrg
	1014	DO j = nysg, nyng
[407]	1015	IF ( nzb_s_inner(j,i) /= 0 ) THEN
	1016	qsws(j,i) = wall_qflux(0)
	1017	ENDIF
	1018	ENDDO
	1019	ENDDO
	1020	ENDIF
[1]	1021	ENDIF
	1022	ENDIF
	1023
	1024	ENDIF
	1025
	1026	!
[19]	1027	!-- Initialize fluxes at top surface
[94]	1028	!-- Currently, only the heatflux and salinity flux can be prescribed.
	1029	!-- The latent flux is zero in this case!
[19]	1030	IF ( use_top_fluxes ) THEN
	1031
	1032	IF ( constant_top_heatflux ) THEN
	1033	!
	1034	!-- Heat flux is prescribed
	1035	tswst = top_heatflux
	1036
[1053]	1037	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1038	qswst = 0.0_wp
[1115]	1039	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1040	precipitation ) THEN
[1340]	1041	nrswst = 0.0_wp
	1042	qrswst = 0.0_wp
[1053]	1043	ENDIF
	1044	ENDIF
[94]	1045
	1046	IF ( ocean ) THEN
[95]	1047	saswsb = bottom_salinityflux
[94]	1048	saswst = top_salinityflux
	1049	ENDIF
[102]	1050	ENDIF
[19]	1051
[102]	1052	!
	1053	!-- Initialization in case of a coupled model run
	1054	IF ( coupling_mode == 'ocean_to_atmosphere' ) THEN
[1340]	1055	tswst = 0.0_wp
[102]	1056	ENDIF
	1057
[19]	1058	ENDIF
	1059
	1060	!
[1]	1061	!-- Initialize Prandtl layer quantities
	1062	IF ( prandtl_layer ) THEN
	1063
	1064	z0 = roughness_length
[978]	1065	z0h = z0h_factor * z0
[1]	1066
	1067	IF ( .NOT. constant_heatflux ) THEN
	1068	!
	1069	!-- Surface temperature is prescribed. Here the heat flux cannot be
	1070	!-- simply estimated, because therefore rif, u* and theta* would have
	1071	!-- to be computed by iteration. This is why the heat flux is assumed
	1072	!-- to be zero before the first time step. It approaches its correct
	1073	!-- value in the course of the first few time steps.
[1340]	1074	shf = 0.0_wp
[1]	1075	ENDIF
	1076
[75]	1077	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1078	IF ( .NOT. constant_waterflux ) qsws = 0.0_wp
[1115]	1079	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1080	precipitation ) THEN
[1340]	1081	qrsws = 0.0_wp
	1082	nrsws = 0.0_wp
[1053]	1083	ENDIF
[1]	1084	ENDIF
	1085
	1086	ENDIF
	1087
[1179]	1088	!
	1089	!-- Set the reference state to be used in the buoyancy terms (for ocean runs
	1090	!-- the reference state will be set (overwritten) in init_ocean)
	1091	IF ( use_single_reference_value ) THEN
	1092	IF ( .NOT. humidity ) THEN
	1093	ref_state(:) = pt_reference
	1094	ELSE
	1095	ref_state(:) = vpt_reference
	1096	ENDIF
	1097	ELSE
	1098	IF ( .NOT. humidity ) THEN
	1099	ref_state(:) = pt_init(:)
	1100	ELSE
	1101	ref_state(:) = vpt(:,nys,nxl)
	1102	ENDIF
	1103	ENDIF
[152]	1104
	1105	!
[707]	1106	!-- For the moment, vertical velocity is zero
[1340]	1107	w = 0.0_wp
[1]	1108
	1109	!
	1110	!-- Initialize array sums (must be defined in first call of pres)
[1340]	1111	sums = 0.0_wp
[1]	1112
	1113	!
[707]	1114	!-- In case of iterative solvers, p must get an initial value
[1340]	1115	IF ( psolver == 'multigrid' .OR. psolver == 'sor' ) p = 0.0_wp
[707]	1116
	1117	!
[72]	1118	!-- Treating cloud physics, liquid water content and precipitation amount
	1119	!-- are zero at beginning of the simulation
	1120	IF ( cloud_physics ) THEN
[1340]	1121	ql = 0.0_wp
	1122	IF ( precipitation ) precipitation_amount = 0.0_wp
[1115]	1123	IF ( icloud_scheme == 0 ) THEN
[1340]	1124	qc = 0.0_wp
[1115]	1125	nc_1d = nc_const
	1126	ENDIF
[72]	1127	ENDIF
[673]	1128	!
[1]	1129	!-- Impose vortex with vertical axis on the initial velocity profile
	1130	IF ( INDEX( initializing_actions, 'initialize_vortex' ) /= 0 ) THEN
	1131	CALL init_rankine
	1132	ENDIF
	1133
	1134	!
	1135	!-- Impose temperature anomaly (advection test only)
	1136	IF ( INDEX( initializing_actions, 'initialize_ptanom' ) /= 0 ) THEN
	1137	CALL init_pt_anomaly
	1138	ENDIF
	1139
	1140	!
	1141	!-- If required, change the surface temperature at the start of the 3D run
[1340]	1142	IF ( pt_surface_initial_change /= 0.0_wp ) THEN
[1]	1143	pt(nzb,:,:) = pt(nzb,:,:) + pt_surface_initial_change
	1144	ENDIF
	1145
	1146	!
	1147	!-- If required, change the surface humidity/scalar at the start of the 3D
	1148	!-- run
[75]	1149	IF ( ( humidity .OR. passive_scalar ) .AND. &
[1340]	1150	q_surface_initial_change /= 0.0_wp ) THEN
[1]	1151	q(nzb,:,:) = q(nzb,:,:) + q_surface_initial_change
	1152	ENDIF
	1153
	1154	!
	1155	!-- Initialize old and new time levels.
[1340]	1156	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1]	1157	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
	1158
[75]	1159	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1160	tq_m = 0.0_wp
[1]	1161	q_p = q
[1115]	1162	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1163	precipitation ) THEN
[1340]	1164	tqr_m = 0.0_wp
[1053]	1165	qr_p = qr
[1340]	1166	tnr_m = 0.0_wp
[1053]	1167	nr_p = nr
	1168	ENDIF
[1]	1169	ENDIF
	1170
[94]	1171	IF ( ocean ) THEN
[1340]	1172	tsa_m = 0.0_wp
[94]	1173	sa_p = sa
	1174	ENDIF
[667]	1175
[1402]	1176	CALL location_message( 'finished', .TRUE. )
[94]	1177
[147]	1178	ELSEIF ( TRIM( initializing_actions ) == 'read_restart_data' .OR. &
[667]	1179	TRIM( initializing_actions ) == 'cyclic_fill' ) &
[1]	1180	THEN
[1384]	1181
[1402]	1182	CALL location_message( 'initializing in case of restart / cyclic_fill', &
	1183	.FALSE. )
[1]	1184	!
[767]	1185	!-- When reading data for cyclic fill of 3D prerun data files, read
	1186	!-- some of the global variables from the restart file which are required
	1187	!-- for initializing the inflow
[328]	1188	IF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
[559]	1189
[759]	1190	DO i = 0, io_blocks-1
	1191	IF ( i == io_group ) THEN
	1192	CALL read_parts_of_var_list
	1193	CALL close_file( 13 )
	1194	ENDIF
	1195	#if defined( __parallel )
	1196	CALL MPI_BARRIER( comm2d, ierr )
	1197	#endif
	1198	ENDDO
[328]	1199
[767]	1200	ENDIF
	1201
[151]	1202	!
[767]	1203	!-- Read binary data from restart file
	1204	DO i = 0, io_blocks-1
	1205	IF ( i == io_group ) THEN
	1206	CALL read_3d_binary
	1207	ENDIF
	1208	#if defined( __parallel )
	1209	CALL MPI_BARRIER( comm2d, ierr )
	1210	#endif
	1211	ENDDO
	1212
[328]	1213	!
[767]	1214	!-- Initialization of the turbulence recycling method
	1215	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1216	turbulent_inflow ) THEN
	1217	!
	1218	!-- First store the profiles to be used at the inflow.
	1219	!-- These profiles are the (temporally) and horizontally averaged vertical
	1220	!-- profiles from the prerun. Alternatively, prescribed profiles
	1221	!-- for u,v-components can be used.
	1222	ALLOCATE( mean_inflow_profiles(nzb:nzt+1,5) )
[151]	1223
[767]	1224	IF ( use_prescribed_profile_data ) THEN
	1225	mean_inflow_profiles(:,1) = u_init ! u
	1226	mean_inflow_profiles(:,2) = v_init ! v
	1227	ELSE
[328]	1228	mean_inflow_profiles(:,1) = hom_sum(:,1,0) ! u
	1229	mean_inflow_profiles(:,2) = hom_sum(:,2,0) ! v
[767]	1230	ENDIF
	1231	mean_inflow_profiles(:,4) = hom_sum(:,4,0) ! pt
	1232	mean_inflow_profiles(:,5) = hom_sum(:,8,0) ! e
[151]	1233
	1234	!
[767]	1235	!-- If necessary, adjust the horizontal flow field to the prescribed
	1236	!-- profiles
	1237	IF ( use_prescribed_profile_data ) THEN
	1238	DO i = nxlg, nxrg
[667]	1239	DO j = nysg, nyng
[328]	1240	DO k = nzb, nzt+1
[767]	1241	u(k,j,i) = u(k,j,i) - hom_sum(k,1,0) + u_init(k)
	1242	v(k,j,i) = v(k,j,i) - hom_sum(k,2,0) + v_init(k)
[328]	1243	ENDDO
[151]	1244	ENDDO
[767]	1245	ENDDO
	1246	ENDIF
[151]	1247
	1248	!
[767]	1249	!-- Use these mean profiles at the inflow (provided that Dirichlet
	1250	!-- conditions are used)
	1251	IF ( inflow_l ) THEN
	1252	DO j = nysg, nyng
	1253	DO k = nzb, nzt+1
	1254	u(k,j,nxlg:-1) = mean_inflow_profiles(k,1)
	1255	v(k,j,nxlg:-1) = mean_inflow_profiles(k,2)
[1340]	1256	w(k,j,nxlg:-1) = 0.0_wp
[767]	1257	pt(k,j,nxlg:-1) = mean_inflow_profiles(k,4)
	1258	e(k,j,nxlg:-1) = mean_inflow_profiles(k,5)
	1259	ENDDO
	1260	ENDDO
	1261	ENDIF
	1262
[151]	1263	!
[767]	1264	!-- Calculate the damping factors to be used at the inflow. For a
	1265	!-- turbulent inflow the turbulent fluctuations have to be limited
	1266	!-- vertically because otherwise the turbulent inflow layer will grow
	1267	!-- in time.
[1340]	1268	IF ( inflow_damping_height == 9999999.9_wp ) THEN
[767]	1269	!
	1270	!-- Default: use the inversion height calculated by the prerun; if
	1271	!-- this is zero, inflow_damping_height must be explicitly
	1272	!-- specified.
[1340]	1273	IF ( hom_sum(nzb+6,pr_palm,0) /= 0.0_wp ) THEN
[767]	1274	inflow_damping_height = hom_sum(nzb+6,pr_palm,0)
	1275	ELSE
	1276	WRITE( message_string, * ) 'inflow_damping_height must be ',&
	1277	'explicitly specified because&the inversion height ', &
	1278	'calculated by the prerun is zero.'
	1279	CALL message( 'init_3d_model', 'PA0318', 1, 2, 0, 6, 0 )
[292]	1280	ENDIF
[151]	1281
[767]	1282	ENDIF
	1283
[1340]	1284	IF ( inflow_damping_width == 9999999.9_wp ) THEN
[151]	1285	!
[767]	1286	!-- Default for the transition range: one tenth of the undamped
	1287	!-- layer
[1340]	1288	inflow_damping_width = 0.1_wp * inflow_damping_height
[151]	1289
[767]	1290	ENDIF
[151]	1291
[767]	1292	ALLOCATE( inflow_damping_factor(nzb:nzt+1) )
[151]	1293
[767]	1294	DO k = nzb, nzt+1
[151]	1295
[767]	1296	IF ( zu(k) <= inflow_damping_height ) THEN
[1340]	1297	inflow_damping_factor(k) = 1.0_wp
[996]	1298	ELSEIF ( zu(k) <= ( inflow_damping_height + inflow_damping_width ) ) THEN
[1340]	1299	inflow_damping_factor(k) = 1.0_wp - &
[996]	1300	( zu(k) - inflow_damping_height ) / &
	1301	inflow_damping_width
[767]	1302	ELSE
[1340]	1303	inflow_damping_factor(k) = 0.0_wp
[767]	1304	ENDIF
[151]	1305
[767]	1306	ENDDO
[151]	1307
[147]	1308	ENDIF
	1309
[152]	1310	!
[359]	1311	!-- Inside buildings set velocities and TKE back to zero
	1312	IF ( TRIM( initializing_actions ) == 'cyclic_fill' .AND. &
	1313	topography /= 'flat' ) THEN
	1314	!
	1315	!-- Inside buildings set velocities and TKE back to zero.
	1316	!-- Other scalars (pt, q, s, km, kh, p, sa, ...) are ignored at present,
	1317	!-- maybe revise later.
[1001]	1318	DO i = nxlg, nxrg
	1319	DO j = nysg, nyng
[1340]	1320	u (nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	1321	v (nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
	1322	w (nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1323	e (nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1324	tu_m(nzb:nzb_u_inner(j,i),j,i) = 0.0_wp
	1325	tv_m(nzb:nzb_v_inner(j,i),j,i) = 0.0_wp
	1326	tw_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1327	te_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
	1328	tpt_m(nzb:nzb_w_inner(j,i),j,i) = 0.0_wp
[359]	1329	ENDDO
[1001]	1330	ENDDO
[359]	1331
	1332	ENDIF
	1333
	1334	!
[1]	1335	!-- Calculate initial temperature field and other constants used in case
	1336	!-- of a sloping surface
	1337	IF ( sloping_surface ) CALL init_slope
	1338
	1339	!
	1340	!-- Initialize new time levels (only done in order to set boundary values
	1341	!-- including ghost points)
	1342	e_p = e; pt_p = pt; u_p = u; v_p = v; w_p = w
[1053]	1343	IF ( humidity .OR. passive_scalar ) THEN
	1344	q_p = q
[1115]	1345	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1346	precipitation ) THEN
[1053]	1347	qr_p = qr
	1348	nr_p = nr
	1349	ENDIF
	1350	ENDIF
[94]	1351	IF ( ocean ) sa_p = sa
[1]	1352
[181]	1353	!
	1354	!-- Allthough tendency arrays are set in prognostic_equations, they have
	1355	!-- have to be predefined here because they are used (but multiplied with 0)
	1356	!-- there before they are set.
[1340]	1357	te_m = 0.0_wp; tpt_m = 0.0_wp; tu_m = 0.0_wp; tv_m = 0.0_wp; tw_m = 0.0_wp
[1053]	1358	IF ( humidity .OR. passive_scalar ) THEN
[1340]	1359	tq_m = 0.0_wp
[1115]	1360	IF ( cloud_physics .AND. icloud_scheme == 0 .AND. &
	1361	precipitation ) THEN
[1340]	1362	tqr_m = 0.0_wp
	1363	tnr_m = 0.0_wp
[1053]	1364	ENDIF
	1365	ENDIF
[1340]	1366	IF ( ocean ) tsa_m = 0.0_wp
[181]	1367
[1402]	1368	CALL location_message( 'finished', .TRUE. )
[1384]	1369
[1]	1370	ELSE
	1371	!
	1372	!-- Actually this part of the programm should not be reached
[254]	1373	message_string = 'unknown initializing problem'
	1374	CALL message( 'init_3d_model', 'PA0193', 1, 2, 0, 6, 0 )
[1]	1375	ENDIF
	1376
[151]	1377
	1378	IF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
[1]	1379	!
[151]	1380	!-- Initialize old timelevels needed for radiation boundary conditions
	1381	IF ( outflow_l ) THEN
	1382	u_m_l(:,:,:) = u(:,:,1:2)
	1383	v_m_l(:,:,:) = v(:,:,0:1)
	1384	w_m_l(:,:,:) = w(:,:,0:1)
	1385	ENDIF
	1386	IF ( outflow_r ) THEN
	1387	u_m_r(:,:,:) = u(:,:,nx-1:nx)
	1388	v_m_r(:,:,:) = v(:,:,nx-1:nx)
	1389	w_m_r(:,:,:) = w(:,:,nx-1:nx)
	1390	ENDIF
	1391	IF ( outflow_s ) THEN
	1392	u_m_s(:,:,:) = u(:,0:1,:)
	1393	v_m_s(:,:,:) = v(:,1:2,:)
	1394	w_m_s(:,:,:) = w(:,0:1,:)
	1395	ENDIF
	1396	IF ( outflow_n ) THEN
	1397	u_m_n(:,:,:) = u(:,ny-1:ny,:)
	1398	v_m_n(:,:,:) = v(:,ny-1:ny,:)
	1399	w_m_n(:,:,:) = w(:,ny-1:ny,:)
	1400	ENDIF
[667]	1401
[151]	1402	ENDIF
[680]	1403
[667]	1404	!
	1405	!-- Calculate the initial volume flow at the right and north boundary
[709]	1406	IF ( conserve_volume_flow ) THEN
[151]	1407
[767]	1408	IF ( use_prescribed_profile_data ) THEN
[667]	1409
[1340]	1410	volume_flow_initial_l = 0.0_wp
	1411	volume_flow_area_l = 0.0_wp
[732]	1412
[667]	1413	IF ( nxr == nx ) THEN
	1414	DO j = nys, nyn
[709]	1415	DO k = nzb_2d(j,nx)+1, nzt
[667]	1416	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[767]	1417	u_init(k) * dzw(k)
	1418	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1419	ENDDO
	1420	ENDDO
	1421	ENDIF
	1422
	1423	IF ( nyn == ny ) THEN
	1424	DO i = nxl, nxr
	1425	DO k = nzb_2d(ny,i)+1, nzt
	1426	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1427	v_init(k) * dzw(k)
	1428	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1429	ENDDO
	1430	ENDDO
	1431	ENDIF
	1432
	1433	#if defined( __parallel )
	1434	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1435	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1436	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1437	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1438
	1439	#else
	1440	volume_flow_initial = volume_flow_initial_l
	1441	volume_flow_area = volume_flow_area_l
	1442	#endif
	1443
	1444	ELSEIF ( TRIM( initializing_actions ) == 'cyclic_fill' ) THEN
	1445
[1340]	1446	volume_flow_initial_l = 0.0_wp
	1447	volume_flow_area_l = 0.0_wp
[767]	1448
	1449	IF ( nxr == nx ) THEN
	1450	DO j = nys, nyn
	1451	DO k = nzb_2d(j,nx)+1, nzt
	1452	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[667]	1453	hom_sum(k,1,0) * dzw(k)
	1454	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1455	ENDDO
	1456	ENDDO
	1457	ENDIF
	1458
	1459	IF ( nyn == ny ) THEN
	1460	DO i = nxl, nxr
[709]	1461	DO k = nzb_2d(ny,i)+1, nzt
[667]	1462	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
[709]	1463	hom_sum(k,2,0) * dzw(k)
[667]	1464	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1465	ENDDO
	1466	ENDDO
	1467	ENDIF
	1468
[732]	1469	#if defined( __parallel )
	1470	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1471	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1472	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1473	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1474
	1475	#else
	1476	volume_flow_initial = volume_flow_initial_l
	1477	volume_flow_area = volume_flow_area_l
	1478	#endif
	1479
[667]	1480	ELSEIF ( TRIM( initializing_actions ) /= 'read_restart_data' ) THEN
	1481
[1340]	1482	volume_flow_initial_l = 0.0_wp
	1483	volume_flow_area_l = 0.0_wp
[732]	1484
[667]	1485	IF ( nxr == nx ) THEN
	1486	DO j = nys, nyn
[709]	1487	DO k = nzb_2d(j,nx)+1, nzt
[667]	1488	volume_flow_initial_l(1) = volume_flow_initial_l(1) + &
[709]	1489	u(k,j,nx) * dzw(k)
[667]	1490	volume_flow_area_l(1) = volume_flow_area_l(1) + dzw(k)
	1491	ENDDO
	1492	ENDDO
	1493	ENDIF
	1494
	1495	IF ( nyn == ny ) THEN
	1496	DO i = nxl, nxr
[709]	1497	DO k = nzb_2d(ny,i)+1, nzt
[667]	1498	volume_flow_initial_l(2) = volume_flow_initial_l(2) + &
	1499	v(k,ny,i) * dzw(k)
	1500	volume_flow_area_l(2) = volume_flow_area_l(2) + dzw(k)
	1501	ENDDO
	1502	ENDDO
	1503	ENDIF
	1504
	1505	#if defined( __parallel )
[732]	1506	CALL MPI_ALLREDUCE( volume_flow_initial_l(1), volume_flow_initial(1),&
	1507	2, MPI_REAL, MPI_SUM, comm2d, ierr )
	1508	CALL MPI_ALLREDUCE( volume_flow_area_l(1), volume_flow_area(1), &
	1509	2, MPI_REAL, MPI_SUM, comm2d, ierr )
[667]	1510
	1511	#else
[732]	1512	volume_flow_initial = volume_flow_initial_l
	1513	volume_flow_area = volume_flow_area_l
[667]	1514	#endif
	1515
[732]	1516	ENDIF
	1517
[151]	1518	!
[709]	1519	!-- In case of 'bulk_velocity' mode, volume_flow_initial is calculated
	1520	!-- from u\|v_bulk instead
[680]	1521	IF ( TRIM( conserve_volume_flow_mode ) == 'bulk_velocity' ) THEN
	1522	volume_flow_initial(1) = u_bulk * volume_flow_area(1)
	1523	volume_flow_initial(2) = v_bulk * volume_flow_area(2)
	1524	ENDIF
[667]	1525
[680]	1526	ENDIF
	1527
[787]	1528	!
	1529	!-- Initialize quantities for special advections schemes
	1530	CALL init_advec
[680]	1531
[667]	1532	!
[680]	1533	!-- Impose random perturbation on the horizontal velocity field and then
	1534	!-- remove the divergences from the velocity field at the initial stage
	1535	IF ( create_disturbances .AND. &
	1536	TRIM( initializing_actions ) /= 'read_restart_data' .AND. &
	1537	TRIM( initializing_actions ) /= 'cyclic_fill' ) THEN
	1538
[1402]	1539	CALL location_message( 'creating initial disturbances', .FALSE. )
[680]	1540	CALL disturb_field( nzb_u_inner, tend, u )
	1541	CALL disturb_field( nzb_v_inner, tend, v )
[1402]	1542	CALL location_message( 'finished', .TRUE. )
[1384]	1543
[1402]	1544	CALL location_message( 'calling pressure solver', .FALSE. )
[680]	1545	n_sor = nsor_ini
[1221]	1546	!$acc data copyin( d, ddzu, ddzw, nzb_s_inner, nzb_u_inner ) &
	1547	!$acc copyin( nzb_v_inner, nzb_w_inner, p, rflags_s_inner, tend ) &
	1548	!$acc copyin( weight_pres, weight_substep ) &
	1549	!$acc copy( tri, tric, u, v, w )
[680]	1550	CALL pres
[1111]	1551	!$acc end data
[680]	1552	n_sor = nsor
[1402]	1553	CALL location_message( 'finished', .TRUE. )
[1384]	1554
[680]	1555	ENDIF
	1556
	1557	!
[1484]	1558	!-- If required, initialize quantities needed for the plant canopy model
	1559	IF ( plant_canopy ) CALL init_plant_canopy
[138]	1560
	1561	!
[1]	1562	!-- If required, initialize dvrp-software
[1340]	1563	IF ( dt_dvrp /= 9999999.9_wp ) CALL init_dvrp
[1]	1564
[96]	1565	IF ( ocean ) THEN
[1]	1566	!
[96]	1567	!-- Initialize quantities needed for the ocean model
	1568	CALL init_ocean
[388]	1569
[96]	1570	ELSE
	1571	!
	1572	!-- Initialize quantities for handling cloud physics
[849]	1573	!-- This routine must be called before lpm_init, because
[96]	1574	!-- otherwise, array pt_d_t, needed in data_output_dvrp (called by
[849]	1575	!-- lpm_init) is not defined.
[96]	1576	CALL init_cloud_physics
	1577	ENDIF
[1]	1578
	1579	!
	1580	!-- If required, initialize particles
[849]	1581	IF ( particle_advection ) CALL lpm_init
[1]	1582
	1583	!
[673]	1584	!-- Initialize the ws-scheme.
	1585	IF ( ws_scheme_sca .OR. ws_scheme_mom ) CALL ws_init
[1]	1586
	1587	!
[709]	1588	!-- Setting weighting factors for calculation of perturbation pressure
	1589	!-- and turbulent quantities from the RK substeps
	1590	IF ( TRIM(timestep_scheme) == 'runge-kutta-3' ) THEN ! for RK3-method
	1591
[1322]	1592	weight_substep(1) = 1._wp/6._wp
	1593	weight_substep(2) = 3._wp/10._wp
	1594	weight_substep(3) = 8._wp/15._wp
[709]	1595
[1322]	1596	weight_pres(1) = 1._wp/3._wp
	1597	weight_pres(2) = 5._wp/12._wp
	1598	weight_pres(3) = 1._wp/4._wp
[709]	1599
	1600	ELSEIF ( TRIM(timestep_scheme) == 'runge-kutta-2' ) THEN ! for RK2-method
	1601
[1322]	1602	weight_substep(1) = 1._wp/2._wp
	1603	weight_substep(2) = 1._wp/2._wp
[673]	1604
[1322]	1605	weight_pres(1) = 1._wp/2._wp
	1606	weight_pres(2) = 1._wp/2._wp
[709]	1607
[1001]	1608	ELSE ! for Euler-method
[709]	1609
[1340]	1610	weight_substep(1) = 1.0_wp
	1611	weight_pres(1) = 1.0_wp
[709]	1612
[673]	1613	ENDIF
	1614
	1615	!
[1]	1616	!-- Initialize Rayleigh damping factors
[1340]	1617	rdf = 0.0_wp
	1618	rdf_sc = 0.0_wp
	1619	IF ( rayleigh_damping_factor /= 0.0_wp ) THEN
[108]	1620	IF ( .NOT. ocean ) THEN
	1621	DO k = nzb+1, nzt
	1622	IF ( zu(k) >= rayleigh_damping_height ) THEN
	1623	rdf(k) = rayleigh_damping_factor * &
[1340]	1624	( SIN( pi * 0.5_wp * ( zu(k) - rayleigh_damping_height ) &
	1625	/ ( zu(nzt) - rayleigh_damping_height ) )&
[1]	1626	)**2
[108]	1627	ENDIF
	1628	ENDDO
	1629	ELSE
	1630	DO k = nzt, nzb+1, -1
	1631	IF ( zu(k) <= rayleigh_damping_height ) THEN
	1632	rdf(k) = rayleigh_damping_factor * &
[1340]	1633	( SIN( pi * 0.5_wp * ( rayleigh_damping_height - zu(k) ) &
	1634	/ ( rayleigh_damping_height - zu(nzb+1)))&
[108]	1635	)**2
	1636	ENDIF
	1637	ENDDO
	1638	ENDIF
[1]	1639	ENDIF
[785]	1640	IF ( scalar_rayleigh_damping ) rdf_sc = rdf
[1]	1641
	1642	!
[240]	1643	!-- Initialize the starting level and the vertical smoothing factor used for
	1644	!-- the external pressure gradient
[1340]	1645	dp_smooth_factor = 1.0_wp
[240]	1646	IF ( dp_external ) THEN
	1647	!
	1648	!-- Set the starting level dp_level_ind_b only if it has not been set before
	1649	!-- (e.g. in init_grid).
	1650	IF ( dp_level_ind_b == 0 ) THEN
	1651	ind_array = MINLOC( ABS( dp_level_b - zu ) )
	1652	dp_level_ind_b = ind_array(1) - 1 + nzb
	1653	! MINLOC uses lower array bound 1
	1654	ENDIF
	1655	IF ( dp_smooth ) THEN
[1340]	1656	dp_smooth_factor(:dp_level_ind_b) = 0.0_wp
[240]	1657	DO k = dp_level_ind_b+1, nzt
[1340]	1658	dp_smooth_factor(k) = 0.5_wp * ( 1.0_wp + SIN( pi * &
	1659	( REAL( k - dp_level_ind_b, KIND=wp ) / &
	1660	REAL( nzt - dp_level_ind_b, KIND=wp ) - 0.5_wp ) ) )
[240]	1661	ENDDO
	1662	ENDIF
	1663	ENDIF
	1664
	1665	!
[978]	1666	!-- Initialize damping zone for the potential temperature in case of
	1667	!-- non-cyclic lateral boundaries. The damping zone has the maximum value
	1668	!-- at the inflow boundary and decreases to zero at pt_damping_width.
[1340]	1669	ptdf_x = 0.0_wp
	1670	ptdf_y = 0.0_wp
[1159]	1671	IF ( bc_lr_dirrad ) THEN
[996]	1672	DO i = nxl, nxr
[978]	1673	IF ( ( i * dx ) < pt_damping_width ) THEN
[1340]	1674	ptdf_x(i) = pt_damping_factor * ( SIN( pi * 0.5_wp * &
	1675	REAL( pt_damping_width - i * dx, KIND=wp ) / ( &
	1676	REAL( pt_damping_width, KIND=wp ) ) ) )**2
[73]	1677	ENDIF
	1678	ENDDO
[1159]	1679	ELSEIF ( bc_lr_raddir ) THEN
[996]	1680	DO i = nxl, nxr
[978]	1681	IF ( ( i * dx ) > ( nx * dx - pt_damping_width ) ) THEN
[1322]	1682	ptdf_x(i) = pt_damping_factor * &
[1340]	1683	SIN( pi * 0.5_wp * &
	1684	( ( i - nx ) * dx + pt_damping_width ) / &
	1685	REAL( pt_damping_width, KIND=wp ) )**2
[73]	1686	ENDIF
[978]	1687	ENDDO
[1159]	1688	ELSEIF ( bc_ns_dirrad ) THEN
[996]	1689	DO j = nys, nyn
[978]	1690	IF ( ( j * dy ) > ( ny * dy - pt_damping_width ) ) THEN
[1322]	1691	ptdf_y(j) = pt_damping_factor * &
[1340]	1692	SIN( pi * 0.5_wp * &
	1693	( ( j - ny ) * dy + pt_damping_width ) / &
	1694	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1695	ENDIF
[978]	1696	ENDDO
[1159]	1697	ELSEIF ( bc_ns_raddir ) THEN
[996]	1698	DO j = nys, nyn
[978]	1699	IF ( ( j * dy ) < pt_damping_width ) THEN
[1322]	1700	ptdf_y(j) = pt_damping_factor * &
[1340]	1701	SIN( pi * 0.5_wp * &
	1702	( pt_damping_width - j * dy ) / &
	1703	REAL( pt_damping_width, KIND=wp ) )**2
[1]	1704	ENDIF
[73]	1705	ENDDO
[1]	1706	ENDIF
	1707
	1708	!
[709]	1709	!-- Initialize local summation arrays for routine flow_statistics.
	1710	!-- This is necessary because they may not yet have been initialized when they
	1711	!-- are called from flow_statistics (or - depending on the chosen model run -
	1712	!-- are never initialized)
[1340]	1713	sums_divnew_l = 0.0_wp
	1714	sums_divold_l = 0.0_wp
	1715	sums_l_l = 0.0_wp
	1716	sums_up_fraction_l = 0.0_wp
	1717	sums_wsts_bc_l = 0.0_wp
[1]	1718
	1719	!
	1720	!-- Pre-set masks for regional statistics. Default is the total model domain.
[1015]	1721	!-- Ghost points are excluded because counting values at the ghost boundaries
	1722	!-- would bias the statistics
[1340]	1723	rmask = 1.0_wp
	1724	rmask(:,nxlg:nxl-1,:) = 0.0_wp; rmask(:,nxr+1:nxrg,:) = 0.0_wp
	1725	rmask(nysg:nys-1,:,:) = 0.0_wp; rmask(nyn+1:nyng,:,:) = 0.0_wp
[1]	1726
	1727	!
[51]	1728	!-- User-defined initializing actions. Check afterwards, if maximum number
[709]	1729	!-- of allowed timeseries is exceeded
[1]	1730	CALL user_init
	1731
[51]	1732	IF ( dots_num > dots_max ) THEN
[254]	1733	WRITE( message_string, * ) 'number of time series quantities exceeds', &
[274]	1734	' its maximum of dots_max = ', dots_max, &
[254]	1735	' &Please increase dots_max in modules.f90.'
	1736	CALL message( 'init_3d_model', 'PA0194', 1, 2, 0, 6, 0 )
[51]	1737	ENDIF
	1738
[1]	1739	!
	1740	!-- Input binary data file is not needed anymore. This line must be placed
	1741	!-- after call of user_init!
	1742	CALL close_file( 13 )
	1743
	1744	!
	1745	!-- Compute total sum of active mask grid points
	1746	!-- ngp_2dh: number of grid points of a horizontal cross section through the
	1747	!-- total domain
	1748	!-- ngp_3d: number of grid points of the total domain
[132]	1749	ngp_2dh_outer_l = 0
	1750	ngp_2dh_outer = 0
	1751	ngp_2dh_s_inner_l = 0
	1752	ngp_2dh_s_inner = 0
	1753	ngp_2dh_l = 0
	1754	ngp_2dh = 0
[1340]	1755	ngp_3d_inner_l = 0.0_wp
[132]	1756	ngp_3d_inner = 0
	1757	ngp_3d = 0
	1758	ngp_sums = ( nz + 2 ) * ( pr_palm + max_pr_user )
[1]	1759
	1760	DO sr = 0, statistic_regions
	1761	DO i = nxl, nxr
	1762	DO j = nys, nyn
[1340]	1763	IF ( rmask(j,i,sr) == 1.0_wp ) THEN
[1]	1764	!
	1765	!-- All xy-grid points
	1766	ngp_2dh_l(sr) = ngp_2dh_l(sr) + 1
	1767	!
	1768	!-- xy-grid points above topography
	1769	DO k = nzb_s_outer(j,i), nz + 1
	1770	ngp_2dh_outer_l(k,sr) = ngp_2dh_outer_l(k,sr) + 1
	1771	ENDDO
[132]	1772	DO k = nzb_s_inner(j,i), nz + 1
	1773	ngp_2dh_s_inner_l(k,sr) = ngp_2dh_s_inner_l(k,sr) + 1
	1774	ENDDO
[1]	1775	!
	1776	!-- All grid points of the total domain above topography
	1777	ngp_3d_inner_l(sr) = ngp_3d_inner_l(sr) + &
	1778	( nz - nzb_s_inner(j,i) + 2 )
	1779	ENDIF
	1780	ENDDO
	1781	ENDDO
	1782	ENDDO
	1783
	1784	sr = statistic_regions + 1
	1785	#if defined( __parallel )
[622]	1786	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1787	CALL MPI_ALLREDUCE( ngp_2dh_l(0), ngp_2dh(0), sr, MPI_INTEGER, MPI_SUM, &
[1]	1788	comm2d, ierr )
[622]	1789	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1790	CALL MPI_ALLREDUCE( ngp_2dh_outer_l(0,0), ngp_2dh_outer(0,0), (nz+2)*sr, &
[1]	1791	MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	1792	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1793	CALL MPI_ALLREDUCE( ngp_2dh_s_inner_l(0,0), ngp_2dh_s_inner(0,0), &
[132]	1794	(nz+2)*sr, MPI_INTEGER, MPI_SUM, comm2d, ierr )
[622]	1795	IF ( collective_wait ) CALL MPI_BARRIER( comm2d, ierr )
[485]	1796	CALL MPI_ALLREDUCE( ngp_3d_inner_l(0), ngp_3d_inner_tmp(0), sr, MPI_REAL, &
[1]	1797	MPI_SUM, comm2d, ierr )
[485]	1798	ngp_3d_inner = INT( ngp_3d_inner_tmp, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1799	#else
[132]	1800	ngp_2dh = ngp_2dh_l
	1801	ngp_2dh_outer = ngp_2dh_outer_l
	1802	ngp_2dh_s_inner = ngp_2dh_s_inner_l
[485]	1803	ngp_3d_inner = INT( ngp_3d_inner_l, KIND = SELECTED_INT_KIND( 18 ) )
[1]	1804	#endif
	1805
[560]	1806	ngp_3d = INT ( ngp_2dh, KIND = SELECTED_INT_KIND( 18 ) ) * &
	1807	INT ( (nz + 2 ), KIND = SELECTED_INT_KIND( 18 ) )
[1]	1808
	1809	!
	1810	!-- Set a lower limit of 1 in order to avoid zero divisions in flow_statistics,
	1811	!-- buoyancy, etc. A zero value will occur for cases where all grid points of
	1812	!-- the respective subdomain lie below the surface topography
[667]	1813	ngp_2dh_outer = MAX( 1, ngp_2dh_outer(:,:) )
[631]	1814	ngp_3d_inner = MAX( INT(1, KIND = SELECTED_INT_KIND( 18 )), &
	1815	ngp_3d_inner(:) )
[667]	1816	ngp_2dh_s_inner = MAX( 1, ngp_2dh_s_inner(:,:) )
[1]	1817
[485]	1818	DEALLOCATE( ngp_2dh_l, ngp_2dh_outer_l, ngp_3d_inner_l, ngp_3d_inner_tmp )
[1]	1819
[1402]	1820	CALL location_message( 'leaving init_3d_model', .TRUE. )
[1]	1821
	1822	END SUBROUTINE init_3d_model

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source: palm/trunk/SOURCE/init_3d_model.f90 @ 1484

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