[4778] | 1 | !> @file data_output_particle_mod.f90 |
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| 2 | !--------------------------------------------------------------------------------------------------! |
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| 3 | ! This file is part of the PALM model system. |
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| 4 | ! |
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| 5 | ! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General |
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| 6 | ! Public License as published by the Free Software Foundation, either version 3 of the License, or |
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| 7 | ! (at your option) any later version. |
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| 8 | ! |
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| 9 | ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the |
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| 10 | ! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General |
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| 11 | ! Public License for more details. |
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| 12 | ! |
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| 13 | ! You should have received a copy of the GNU General Public License along with PALM. If not, see |
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| 14 | ! <http://www.gnu.org/licenses/>. |
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| 15 | ! |
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| 16 | ! Copyright 1997-2020 Leibniz Universitaet Hannover |
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| 17 | !--------------------------------------------------------------------------------------------------! |
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| 18 | ! |
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| 19 | ! Current revisions: |
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| 20 | ! ----------------- |
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| 21 | ! |
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| 22 | ! |
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| 23 | ! Former revisions: |
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| 24 | ! ----------------- |
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| 25 | ! $Id: data_output_particle_mod.f90 4792 2020-11-23 13:02:38Z eckhard $ |
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[4792] | 26 | ! file re-formatted to follow the PALM coding standard |
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| 27 | ! |
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| 28 | ! 4779 2020-11-09 17:45:22Z suehring |
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[4779] | 29 | ! Avoid overlong lines and unused variables |
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| 30 | ! |
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| 31 | ! 4778 2020-11-09 13:40:05Z raasch |
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[4778] | 32 | ! Initial implementation (K. Ketelsen) |
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| 33 | ! |
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| 34 | ! |
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[4792] | 35 | !--------------------------------------------------------------------------------------------------! |
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[4778] | 36 | ! Description: |
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| 37 | ! ------------ |
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| 38 | !> Output of particle time series |
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| 39 | !--------------------------------------------------------------------------------------------------! |
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| 40 | MODULE data_output_particle_mod |
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| 41 | |
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| 42 | #if defined( __parallel ) |
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[4792] | 43 | USE MPI |
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[4778] | 44 | #endif |
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| 45 | |
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| 46 | #if defined( __netcdf4 ) |
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[4792] | 47 | USE NETCDF |
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[4778] | 48 | #endif |
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| 49 | |
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[4792] | 50 | USE, INTRINSIC :: ISO_C_BINDING |
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[4778] | 51 | |
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[4792] | 52 | USE kinds, & |
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| 53 | ONLY: dp, idp, isp, iwp, sp, wp |
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[4778] | 54 | |
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[4792] | 55 | USE indices, & |
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| 56 | ONLY: nbgp, nnx, nny, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nz, nzb, nzt |
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[4778] | 57 | |
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[4792] | 58 | USE control_parameters, & |
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| 59 | ONLY: dt_dopts, end_time, simulated_time |
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[4778] | 60 | |
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[4792] | 61 | USE pegrid, & |
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| 62 | ONLY: comm1dx, comm1dy, comm2d, myid, myidx, myidy, npex, npey, numprocs, pdims |
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[4778] | 63 | |
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[4792] | 64 | USE particle_attributes, & |
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| 65 | ONLY: data_output_pts, grid_particles, grid_particle_def, number_of_output_particles, & |
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| 66 | particles, particle_type, prt_count, pts_id_file, pts_increment, pts_percentage, & |
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| 67 | oversize, unlimited_dimension |
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[4778] | 68 | |
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[4792] | 69 | USE shared_memory_io_mod, & |
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| 70 | ONLY: sm_class |
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[4778] | 71 | |
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[4792] | 72 | USE data_output_netcdf4_module, & |
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| 73 | ONLY: netcdf4_finalize, netcdf4_get_error_message, netcdf4_init_dimension, & |
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| 74 | netcdf4_init_module, netcdf4_init_variable, netcdf4_open_file, & |
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| 75 | netcdf4_stop_file_header_definition, netcdf4_write_attribute, netcdf4_write_variable |
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[4778] | 76 | |
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[4792] | 77 | USE cpulog, & |
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| 78 | ONLY: cpu_log, log_point_s |
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[4778] | 79 | |
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[4792] | 80 | IMPLICIT NONE |
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[4778] | 81 | |
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[4792] | 82 | PRIVATE |
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| 83 | SAVE |
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[4778] | 84 | |
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| 85 | |
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[4792] | 86 | LOGICAL, PUBLIC :: dop_active = .FALSE. |
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[4778] | 87 | |
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[4792] | 88 | ! |
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| 89 | !-- Variables for restart |
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| 90 | INTEGER(iwp), PUBLIC :: dop_prt_axis_dimension |
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| 91 | INTEGER(iwp), PUBLIC :: dop_last_active_particle |
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[4778] | 92 | |
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[4792] | 93 | ! |
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| 94 | !-- kk Private module variables can be declared inside the submodule |
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| 95 | INTEGER, PARAMETER :: max_nr_variables = 128 |
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| 96 | INTEGER, PARAMETER :: nr_fixed_variables = 16 |
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[4778] | 97 | |
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[4792] | 98 | CHARACTER(LEN=32) :: file_name !< Name of NetCDF file |
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[4778] | 99 | |
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[4792] | 100 | INTEGER(iwp) :: end_local_numbering |
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| 101 | INTEGER(iwp) :: io_end_index |
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| 102 | INTEGER(iwp) :: io_start_index !< Start index of the output area on IO thread |
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| 103 | INTEGER(iwp) :: nr_particles_pe !< Number of particles assigned for output on this thread |
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| 104 | INTEGER(iwp) :: nr_particles_rest !< Numbere of rest Particle (ireg. distribution) |
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| 105 | INTEGER(iwp) :: nr_particles_out !< Total number od particles assigned for output |
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| 106 | INTEGER(iwp) :: nr_time_values !< Number of values on time axis |
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| 107 | INTEGER(iwp) :: pe_end_index |
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| 108 | INTEGER(iwp) :: pe_start_index !< Start index of the output area on this thread |
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| 109 | INTEGER(iwp) :: start_local_numbering !< Start increment 1 numbering on this thread |
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[4778] | 110 | |
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[4792] | 111 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: io_indices !< Indices on IO processes |
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| 112 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: mo_indices !< Indices for model communicator |
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| 113 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: remote_nr_particles |
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| 114 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: rma_particles !< Start address and number of remote particles |
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| 115 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: sh_indices !< Indices in shared memory group |
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[4778] | 116 | |
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[4792] | 117 | LOGICAL :: irregular_distribubtion !< irregular distribution of output particlesexit |
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[4778] | 118 | |
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[4792] | 119 | REAL(sp), ALLOCATABLE, DIMENSION(:) :: time_axis_values !< time axis Values |
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[4778] | 120 | |
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[4792] | 121 | TYPE var_def |
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| 122 | INTEGER(iwp) :: var_id |
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| 123 | CHARACTER(LEN=32) :: name |
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| 124 | CHARACTER(LEN=32) :: units |
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| 125 | LOGICAL :: is_integer = .FALSE. |
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| 126 | END TYPE var_def |
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[4778] | 127 | |
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[4792] | 128 | TYPE(sm_class) :: part_io !< manage communicator for particle IO |
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[4778] | 129 | |
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[4792] | 130 | TYPE(var_def), DIMENSION(nr_fixed_variables) :: fix_variables |
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| 131 | TYPE(var_def), DIMENSION(max_nr_variables) :: variables |
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[4778] | 132 | |
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| 133 | ! |
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[4792] | 134 | !-- NetCDF |
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| 135 | INTEGER(iwp) :: file_id = -1 !< id of Netcdf file |
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| 136 | INTEGER(iwp) :: nr_fix_variables !< Number of fixed variables scheduled for output |
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| 137 | INTEGER(iwp) :: nr_variables !< Number of variables scheduled for output |
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[4778] | 138 | |
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[4792] | 139 | TYPE dimension_id |
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| 140 | INTEGER(iwp) :: prt |
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| 141 | INTEGER(iwp) :: time |
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| 142 | END TYPE dimension_id |
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[4778] | 143 | |
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[4792] | 144 | TYPE variable_id |
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| 145 | INTEGER(iwp) :: prt |
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| 146 | INTEGER(iwp) :: time |
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| 147 | END TYPE variable_id |
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[4778] | 148 | |
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[4792] | 149 | TYPE(dimension_id) :: did |
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| 150 | TYPE(variable_id) :: var_id |
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[4778] | 151 | |
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[4792] | 152 | ! |
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| 153 | !-- Shared memory buffer |
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| 154 | INTEGER(iwp) :: win_prt_i = -1 !< integer MPI shared Memory window |
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| 155 | INTEGER(iwp) :: win_prt_r = -1 !< real MPI shared Memory window |
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| 156 | INTEGER(iwp), POINTER, CONTIGUOUS, DIMENSION(:) :: out_buf_i !< integer output buffer |
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| 157 | REAL(sp), POINTER, CONTIGUOUS, DIMENSION(:) :: out_buf_r !< real output buffer |
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[4778] | 158 | |
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| 159 | ! |
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[4792] | 160 | !-- Particle list in file |
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| 161 | INTEGER(idp), ALLOCATABLE, DIMENSION(:) :: part_id_list_file |
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[4778] | 162 | |
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[4792] | 163 | LOGICAL :: part_list_in_file |
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| 164 | |
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[4778] | 165 | ! |
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[4792] | 166 | !-- RMA window |
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[4778] | 167 | #if defined( __parallel ) |
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[4792] | 168 | INTEGER(iwp) :: win_rma_buf_i |
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| 169 | INTEGER(iwp) :: win_rma_buf_r |
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[4778] | 170 | #endif |
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| 171 | |
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[4792] | 172 | INTEGER(iwp) :: initial_number_of_active_particles |
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| 173 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: remote_indices !< particle nubmer of the remodte partices, |
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| 174 | !< used as indices in the output array |
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| 175 | INTEGER(iwp), POINTER, DIMENSION(:) :: transfer_buffer_i !< rma window to provide data, which can be |
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| 176 | !< fetch via MPI_Get |
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| 177 | REAL(sp), POINTER, DIMENSION(:) :: transfer_buffer_r !< Same for REAL |
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[4778] | 178 | |
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[4792] | 179 | ! |
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| 180 | !-- Public subroutine Interface |
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| 181 | INTERFACE dop_init |
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| 182 | MODULE PROCEDURE dop_init |
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| 183 | END INTERFACE dop_init |
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[4778] | 184 | |
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[4792] | 185 | INTERFACE dop_output_tseries |
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| 186 | MODULE PROCEDURE dop_output_tseries |
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| 187 | END INTERFACE dop_output_tseries |
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[4778] | 188 | |
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[4792] | 189 | INTERFACE dop_finalize |
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| 190 | MODULE PROCEDURE dop_finalize |
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| 191 | END INTERFACE dop_finalize |
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[4778] | 192 | |
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| 193 | #if defined( __parallel ) |
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[4792] | 194 | INTERFACE dop_alloc_rma_mem |
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| 195 | MODULE PROCEDURE dop_alloc_rma_mem_i1 |
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| 196 | MODULE PROCEDURE dop_alloc_rma_mem_r1 |
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| 197 | END INTERFACE dop_alloc_rma_mem |
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[4778] | 198 | #endif |
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| 199 | |
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[4792] | 200 | PUBLIC dop_init, dop_output_tseries, dop_finalize |
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[4778] | 201 | #if defined( __parallel ) |
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[4792] | 202 | PUBLIC dop_alloc_rma_mem ! Must be PUBLIC on NEC, although it is only used in submodule |
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[4778] | 203 | #endif |
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| 204 | |
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| 205 | |
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| 206 | CONTAINS |
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| 207 | |
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| 208 | |
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[4792] | 209 | !--------------------------------------------------------------------------------------------------! |
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| 210 | ! Description: |
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| 211 | ! ------------ |
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| 212 | ! |
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| 213 | !--------------------------------------------------------------------------------------------------! |
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| 214 | SUBROUTINE dop_init( read_restart ) |
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| 215 | IMPLICIT NONE |
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| 216 | |
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| 217 | INTEGER(iwp) :: i !< |
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[4778] | 218 | #if defined( __parallel ) |
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[4792] | 219 | INTEGER(iwp) :: ierr !< MPI error code |
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[4778] | 220 | #endif |
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[4792] | 221 | INTEGER(iwp) :: nr_local_last_pe !< Number of output particles on myid == numprocs-2 |
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| 222 | INTEGER(idp) :: nr_particles_8 !< Total number of particles in 64 bit |
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| 223 | INTEGER(iwp) :: nr_particles_local !< total number of particles scheduled for output on this thread |
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[4778] | 224 | |
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[4792] | 225 | INTEGER(idp), DIMENSION(0:numprocs-1) :: nr_particles_all_8 |
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| 226 | INTEGER(iwp), DIMENSION(0:numprocs-1) :: nr_particles_all_s |
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| 227 | INTEGER(iwp), DIMENSION(0:numprocs-1) :: nr_particles_all_r |
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[4778] | 228 | |
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[4792] | 229 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: io_indices_s |
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| 230 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: mo_indices_s |
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| 231 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:,:) :: sh_indices_s |
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[4778] | 232 | |
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[4792] | 233 | LOGICAL, INTENT(IN) :: read_restart |
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[4778] | 234 | |
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[4792] | 235 | REAL(dp) :: xnr_part !< Must be 64 Bit REAL |
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[4778] | 236 | |
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| 237 | |
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[4792] | 238 | part_list_in_file = (pts_id_file /= ' ') |
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[4778] | 239 | |
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[4792] | 240 | IF ( .NOT. part_list_in_file ) THEN |
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| 241 | IF ( .NOT. read_restart) THEN |
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[4778] | 242 | |
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[4792] | 243 | CALL set_indef_particle_nr |
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| 244 | |
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| 245 | CALL count_output_particles( nr_particles_local ) |
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| 246 | |
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| 247 | nr_particles_all_s = 0 |
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| 248 | nr_particles_all_s(myid) = nr_particles_local |
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| 249 | |
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[4778] | 250 | #if defined( __parallel ) |
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[4792] | 251 | CALL MPI_ALLREDUCE( nr_particles_all_s, nr_particles_all_r, SIZE( nr_particles_all_s ), & |
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| 252 | MPI_INTEGER, MPI_SUM, comm2d, ierr ) |
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[4778] | 253 | #else |
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[4792] | 254 | nr_particles_all_r = nr_particles_all_s |
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[4778] | 255 | #endif |
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| 256 | |
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[4792] | 257 | initial_number_of_active_particles = SUM( nr_particles_all_r ) |
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[4778] | 258 | |
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[4792] | 259 | start_local_numbering = 1 |
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| 260 | end_local_numbering = nr_particles_all_r(0) |
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[4778] | 261 | |
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[4792] | 262 | IF ( myid > 0 ) THEN |
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| 263 | DO i = 1, numprocs-1 |
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| 264 | start_local_numbering = start_local_numbering+nr_particles_all_r(i-1) |
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| 265 | end_local_numbering = start_local_numbering+nr_particles_all_r(i)-1 |
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| 266 | IF ( myid == i ) EXIT |
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| 267 | ENDDO |
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| 268 | ENDIF |
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[4778] | 269 | |
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[4792] | 270 | nr_particles_all_8 = nr_particles_all_r ! Use 64 INTEGER, maybe more than 2 GB particles |
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| 271 | nr_particles_8 = SUM( nr_particles_all_8 ) |
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| 272 | IF ( nr_particles_8 > 2000000000_idp ) THEN ! This module works only with 32 Bit INTEGER |
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| 273 | WRITE( 9, * ) 'Number of particles too large ', nr_particles_8 ; FLUSH( 9 ) |
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[4778] | 274 | #if defined( __parallel ) |
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[4792] | 275 | CALL MPI_ABORT( MPI_COMM_WORLD, 1, ierr ) |
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[4778] | 276 | #endif |
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[4792] | 277 | ENDIF |
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| 278 | nr_particles_out = nr_particles_8 ! Total number of particles scheduled for output |
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[4778] | 279 | |
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| 280 | ! |
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[4792] | 281 | !-- Reserve space for additional particle |
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| 282 | IF ( number_of_output_particles > 0 ) THEN |
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| 283 | nr_particles_out = MAX( number_of_output_particles, nr_particles_out ) |
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| 284 | ELSEIF ( oversize > 100.0_wp ) THEN |
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| 285 | xnr_part = nr_particles_out * oversize / 100.0_wp |
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| 286 | nr_particles_out = xnr_part |
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| 287 | ENDIF |
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| 288 | ELSE |
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| 289 | nr_particles_out = dop_prt_axis_dimension ! Get Number from restart file |
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| 290 | initial_number_of_active_particles = dop_last_active_particle |
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| 291 | ENDIF |
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[4778] | 292 | |
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[4792] | 293 | ELSE |
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| 294 | CALL set_indef_particle_nr |
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| 295 | CALL dop_read_output_particle_list( nr_particles_out ) |
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| 296 | ENDIF |
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| 297 | dop_prt_axis_dimension = nr_particles_out |
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| 298 | |
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[4778] | 299 | ! |
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[4792] | 300 | !-- The number of particles must be at least the number of MPI processes |
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| 301 | nr_particles_out = MAX( nr_particles_out, numprocs ) |
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[4778] | 302 | |
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| 303 | |
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[4792] | 304 | nr_particles_pe = ( nr_particles_out + numprocs - 1 ) / numprocs ! Number of paricles scheduled for ouput on this thread |
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[4778] | 305 | |
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[4792] | 306 | pe_start_index = myid * nr_particles_pe + 1 !Output numberimng on this thread |
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| 307 | pe_end_index = MIN( ( myid + 1 ) * nr_particles_pe, nr_particles_out ) |
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[4778] | 308 | |
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[4792] | 309 | irregular_distribubtion = .FALSE. |
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[4778] | 310 | #if defined( __parallel ) |
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| 311 | ! |
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[4792] | 312 | !-- In case of few particles, it can happen that not only the last thread gets fewer output |
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| 313 | !-- particles. In this case, the local number of particles on thread numprocs-1 will be < 1. |
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| 314 | !-- If this happens, irregular distribution of output particles will be used. |
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| 315 | IF ( myid == numprocs-1 ) THEN |
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| 316 | nr_local_last_pe = pe_end_index-pe_start_index + 1 |
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| 317 | ELSE |
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| 318 | nr_local_last_pe = 0 |
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| 319 | ENDIF |
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| 320 | CALL MPI_BCAST( nr_local_last_pe, 1, MPI_INTEGER, numprocs-1, comm2d, ierr ) |
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[4778] | 321 | #else |
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[4792] | 322 | nr_local_last_pe = nr_particles_pe |
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[4778] | 323 | #endif |
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[4792] | 324 | IF ( nr_local_last_pe < 1 ) THEN |
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| 325 | irregular_distribubtion = .TRUE. |
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| 326 | CALL dop_setup_ireg_distribution |
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| 327 | ENDIF |
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[4778] | 328 | |
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| 329 | |
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[4792] | 330 | IF ( .NOT. read_restart .AND. .NOT. part_list_in_file ) THEN |
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| 331 | CALL set_particle_number |
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| 332 | ENDIF |
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[4778] | 333 | |
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[4792] | 334 | IF ( part_list_in_file ) THEN |
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| 335 | CALL dop_find_particle_in_outlist |
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| 336 | ENDIF |
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[4778] | 337 | |
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[4792] | 338 | CALL part_io%sm_init_data_output_particles( ) |
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[4778] | 339 | |
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[4792] | 340 | ALLOCATE( sh_indices_s(2,0:part_io%sh_npes-1) ) |
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| 341 | ALLOCATE( sh_indices(2,0:part_io%sh_npes-1) ) |
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[4778] | 342 | |
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| 343 | |
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| 344 | #if defined( __parallel ) |
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[4792] | 345 | sh_indices_s = 0 |
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| 346 | sh_indices_s(1,part_io%sh_rank) = pe_start_index |
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| 347 | sh_indices_s(2,part_io%sh_rank) = pe_end_index |
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[4778] | 348 | |
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[4792] | 349 | CALL MPI_ALLREDUCE( sh_indices_s, sh_indices, 2*part_io%sh_npes, MPI_INTEGER, MPI_SUM, & |
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| 350 | part_io%comm_shared, ierr ) |
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[4778] | 351 | |
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[4792] | 352 | io_start_index = sh_indices(1,0) ! output numbering on actual IO thread |
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| 353 | io_end_index = sh_indices(2,part_io%sh_npes-1) |
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[4778] | 354 | #else |
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[4792] | 355 | io_start_index = pe_start_index ! output numbering |
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| 356 | io_end_index = pe_end_index |
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[4778] | 357 | #endif |
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| 358 | |
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| 359 | |
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| 360 | #if defined( __parallel ) |
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[4792] | 361 | CALL MPI_BCAST( part_io%io_npes, 1, MPI_INTEGER, 0, part_io%comm_shared, ierr ) |
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[4778] | 362 | #endif |
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[4792] | 363 | ALLOCATE( io_indices(2,0:part_io%io_npes-1) ) |
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| 364 | IF ( part_io%iam_io_pe ) THEN |
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| 365 | ALLOCATE( io_indices_s(2,0:part_io%io_npes-1) ) |
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[4778] | 366 | |
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[4792] | 367 | io_indices_s = 0 |
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| 368 | io_indices_s(1,part_io%io_rank) = io_start_index |
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| 369 | io_indices_s(2,part_io%io_rank) = io_end_index |
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[4778] | 370 | |
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| 371 | #if defined( __parallel ) |
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[4792] | 372 | CALL MPI_ALLREDUCE( io_indices_s, io_indices, 2 * part_io%io_npes, MPI_INTEGER, MPI_SUM, & |
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| 373 | part_io%comm_io, ierr ) |
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[4778] | 374 | #else |
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[4792] | 375 | io_indices = io_indices_s |
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[4778] | 376 | #endif |
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| 377 | |
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[4792] | 378 | ENDIF |
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[4778] | 379 | |
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| 380 | #if defined( __parallel ) |
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[4792] | 381 | CALL MPI_BCAST( io_indices, SIZE( io_indices ), MPI_INTEGER, 0, part_io%comm_shared, ierr ) |
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[4778] | 382 | #endif |
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| 383 | |
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[4792] | 384 | ALLOCATE( remote_nr_particles(2,0:numprocs-1) ) |
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| 385 | ALLOCATE( rma_particles(2,0:numprocs-1) ) |
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[4778] | 386 | |
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[4792] | 387 | ALLOCATE( mo_indices(2,0:numprocs-1) ) |
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| 388 | ALLOCATE( mo_indices_s(2,0:numprocs-1) ) |
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[4778] | 389 | |
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[4792] | 390 | mo_indices_s = 0 |
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| 391 | mo_indices_s(1,myid) = pe_start_index |
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| 392 | mo_indices_s(2,myid) = pe_end_index |
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[4778] | 393 | |
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| 394 | #if defined( __parallel ) |
---|
[4792] | 395 | CALL MPI_ALLREDUCE( mo_indices_s, mo_indices, 2 * numprocs, MPI_INTEGER, MPI_SUM, comm2d, ierr ) |
---|
[4778] | 396 | #else |
---|
[4792] | 397 | mo_indices = mo_indices_s |
---|
[4778] | 398 | #endif |
---|
| 399 | |
---|
[4792] | 400 | !-- Allocate output buffer |
---|
[4778] | 401 | #if defined( __parallel ) |
---|
[4792] | 402 | CALL part_io%sm_allocate_shared( out_buf_r, io_start_index, io_end_index, win_prt_r ) |
---|
| 403 | CALL part_io%sm_allocate_shared( out_buf_i, io_start_index, io_end_index, win_prt_i ) |
---|
[4778] | 404 | #else |
---|
[4792] | 405 | ALLOCATE( out_buf_r(io_start_index:io_end_index) ) |
---|
| 406 | ALLOCATE( out_buf_i(io_start_index:io_end_index) ) |
---|
[4778] | 407 | #endif |
---|
| 408 | |
---|
[4792] | 409 | ! |
---|
| 410 | !-- NetCDF |
---|
| 411 | CALL dop_netcdf_setup( ) |
---|
[4778] | 412 | |
---|
| 413 | #if defined( __parallel ) |
---|
[4792] | 414 | CALL MPI_BCAST( nr_fix_variables, 1, MPI_INTEGER, 0, part_io%comm_shared, ierr ) |
---|
| 415 | CALL MPI_BCAST( nr_variables, 1, MPI_INTEGER, 0, part_io%comm_shared, ierr ) |
---|
[4778] | 416 | #endif |
---|
| 417 | |
---|
[4792] | 418 | CALL dop_count_remote_particles |
---|
[4778] | 419 | |
---|
[4792] | 420 | CALL dop_write_fixed_variables |
---|
[4778] | 421 | |
---|
[4792] | 422 | CALL deallocate_and_free |
---|
[4778] | 423 | |
---|
[4792] | 424 | CALL dop_output_tseries |
---|
[4778] | 425 | |
---|
[4792] | 426 | RETURN |
---|
[4778] | 427 | |
---|
[4792] | 428 | CONTAINS |
---|
[4778] | 429 | |
---|
| 430 | |
---|
[4792] | 431 | !--------------------------------------------------------------------------------------------------! |
---|
| 432 | ! Description: |
---|
| 433 | ! ------------ |
---|
| 434 | ! |
---|
| 435 | !--------------------------------------------------------------------------------------------------! |
---|
| 436 | SUBROUTINE dop_setup_ireg_distribution |
---|
[4778] | 437 | |
---|
[4792] | 438 | IMPLICIT NONE |
---|
[4778] | 439 | |
---|
[4792] | 440 | nr_particles_pe = ( nr_particles_out ) / numprocs ! Number of paricles scheduled for ouput on this thread |
---|
[4778] | 441 | |
---|
[4792] | 442 | nr_particles_rest = nr_particles_out - numprocs * nr_particles_pe |
---|
[4778] | 443 | |
---|
[4792] | 444 | nr_particles_pe = nr_particles_pe + 1 |
---|
| 445 | IF ( myid < nr_particles_rest ) THEN |
---|
| 446 | pe_start_index = myid * nr_particles_pe + 1 ! Output numberimng on this thread |
---|
| 447 | pe_end_index = MIN( ( myid + 1 ) * nr_particles_pe, nr_particles_out) |
---|
| 448 | ELSE |
---|
| 449 | pe_start_index = nr_particles_rest * ( nr_particles_pe ) & |
---|
| 450 | + ( myid - nr_particles_rest ) * ( nr_particles_pe - 1 ) + 1 !Output numberimng on this thread |
---|
| 451 | pe_end_index = MIN( pe_start_index + nr_particles_pe - 2, nr_particles_out ) |
---|
| 452 | ENDIF |
---|
[4778] | 453 | |
---|
| 454 | |
---|
[4792] | 455 | END SUBROUTINE dop_setup_ireg_distribution |
---|
| 456 | |
---|
| 457 | END SUBROUTINE dop_init |
---|
| 458 | |
---|
| 459 | |
---|
| 460 | !--------------------------------------------------------------------------------------------------! |
---|
| 461 | ! Description: |
---|
| 462 | ! ------------ |
---|
| 463 | !> Particle output on selected time steps |
---|
| 464 | !--------------------------------------------------------------------------------------------------! |
---|
| 465 | SUBROUTINE dop_output_tseries |
---|
| 466 | |
---|
| 467 | IMPLICIT NONE |
---|
| 468 | |
---|
| 469 | INTEGER(iwp) :: i !< |
---|
| 470 | INTEGER(iwp) :: return_value !< Return value data_output_netcdf4 .. routines |
---|
[4778] | 471 | #if defined( __parallel ) |
---|
[4792] | 472 | INTEGER(iwp) :: ierr !< MPI error code |
---|
[4778] | 473 | #endif |
---|
[4792] | 474 | INTEGER(iwp), SAVE :: icount=0 !< count output steps |
---|
[4778] | 475 | |
---|
[4792] | 476 | INTEGER(iwp), DIMENSION(2) :: bounds_origin, bounds_start, value_counts |
---|
[4778] | 477 | |
---|
[4792] | 478 | REAl(wp), POINTER, CONTIGUOUS, DIMENSION(:) :: my_time |
---|
[4778] | 479 | |
---|
[4792] | 480 | icount = icount + 1 |
---|
[4778] | 481 | |
---|
[4792] | 482 | CALL dop_delete_particle_number |
---|
[4778] | 483 | |
---|
[4792] | 484 | IF ( part_list_in_file ) THEN |
---|
[4778] | 485 | |
---|
[4792] | 486 | CALL dop_find_particle_in_outlist |
---|
| 487 | ELSE |
---|
| 488 | CALL dop_newly_generated_particles |
---|
| 489 | ENDIF |
---|
[4778] | 490 | |
---|
[4792] | 491 | CALL dop_count_remote_particles |
---|
[4778] | 492 | |
---|
[4792] | 493 | bounds_origin = 1 |
---|
[4778] | 494 | |
---|
[4792] | 495 | bounds_start(1) = io_start_index |
---|
| 496 | bounds_start(2) = icount |
---|
[4778] | 497 | |
---|
[4792] | 498 | value_counts(1) = io_end_index-io_start_index + 1 |
---|
| 499 | value_counts(2) = 1 |
---|
| 500 | |
---|
| 501 | DO i = 1, nr_variables |
---|
[4778] | 502 | #if defined( __netcdf4 ) |
---|
[4792] | 503 | IF ( variables(i)%is_integer ) THEN |
---|
| 504 | out_buf_i = NF90_FILL_INT |
---|
| 505 | ELSE |
---|
| 506 | out_buf_r = NF90_FILL_REAL |
---|
| 507 | ENDIF |
---|
[4778] | 508 | #endif |
---|
| 509 | |
---|
[4792] | 510 | CALL cpu_log( log_point_s(99), 'dop_fill_out_buf', 'start' ) |
---|
| 511 | CALL dop_fill_out_buf (variables(i)) |
---|
| 512 | CALL cpu_log( log_point_s(99), 'dop_fill_out_buf', 'stop' ) |
---|
[4778] | 513 | |
---|
[4792] | 514 | CALL cpu_log( log_point_s(88), 'dop_get_remote_particle', 'start' ) |
---|
[4778] | 515 | #if defined( __parallel ) |
---|
[4792] | 516 | CALL dop_get_remote_particle( variables(i)%is_integer ) |
---|
[4778] | 517 | #endif |
---|
[4792] | 518 | CALL cpu_log( log_point_s(88), 'dop_get_remote_particle', 'stop' ) |
---|
[4778] | 519 | |
---|
[4792] | 520 | CALL cpu_log( log_point_s(89), 'particle NetCDF output', 'start' ) |
---|
| 521 | CALL part_io%sm_node_barrier( ) |
---|
| 522 | IF ( part_io%iam_io_pe ) THEN |
---|
| 523 | IF ( variables(i)%is_integer) THEN |
---|
| 524 | CALL netcdf4_write_variable( 'parallel', file_id, variables(i)%var_id, bounds_start, & |
---|
| 525 | value_counts, bounds_origin, .FALSE., & |
---|
| 526 | values_int32_1d=out_buf_i, return_value=return_value ) |
---|
| 527 | ELSE |
---|
| 528 | CALL netcdf4_write_variable( 'parallel', file_id, variables(i)%var_id, bounds_start, & |
---|
| 529 | value_counts, bounds_origin, .FALSE., & |
---|
| 530 | values_real32_1d=out_buf_r, return_value=return_value) |
---|
| 531 | ENDIF |
---|
| 532 | ENDIF |
---|
| 533 | CALL part_io%sm_node_barrier( ) |
---|
| 534 | CALL cpu_log( log_point_s(89), 'particle NetCDF output', 'stop' ) |
---|
[4778] | 535 | |
---|
| 536 | #if defined( __parallel ) |
---|
[4792] | 537 | CALL MPI_BARRIER( comm2d, ierr ) !kk This Barrier is necessary, not sure why |
---|
[4778] | 538 | #endif |
---|
[4792] | 539 | ENDDO |
---|
[4778] | 540 | |
---|
[4792] | 541 | CALL deallocate_and_free |
---|
[4778] | 542 | |
---|
[4792] | 543 | ! |
---|
| 544 | !-- Write Time value |
---|
| 545 | IF ( myid == 0 ) THEN |
---|
| 546 | ALLOCATE( my_time(1) ) |
---|
| 547 | bounds_start(1) = icount |
---|
| 548 | value_counts(1) = 1 |
---|
| 549 | my_time(1) = simulated_time |
---|
| 550 | IF ( unlimited_dimension ) THEN ! For workaround described in dop finalize |
---|
| 551 | time_axis_values(icount) = my_time(1) |
---|
| 552 | ELSE |
---|
| 553 | CALL netcdf4_write_variable( 'parallel', file_id, var_id%time, bounds_start(1:1), & |
---|
| 554 | value_counts(1:1), bounds_origin(1:1), .TRUE., & |
---|
| 555 | values_realwp_1d=my_time, return_value=return_value ) |
---|
| 556 | ENDIF |
---|
| 557 | DEALLOCATE( my_time ) |
---|
| 558 | ENDIF |
---|
[4778] | 559 | |
---|
[4792] | 560 | RETURN |
---|
| 561 | END SUBROUTINE dop_output_tseries |
---|
[4778] | 562 | |
---|
[4792] | 563 | !--------------------------------------------------------------------------------------------------! |
---|
| 564 | ! Description: |
---|
| 565 | ! ------------ |
---|
| 566 | ! |
---|
| 567 | !--------------------------------------------------------------------------------------------------! |
---|
| 568 | SUBROUTINE dop_finalize |
---|
| 569 | |
---|
| 570 | IMPLICIT NONE |
---|
| 571 | |
---|
[4779] | 572 | #if defined( __netcdf4 ) |
---|
[4792] | 573 | INTEGER(iwp) :: ierr !< MPI error code |
---|
[4779] | 574 | #endif |
---|
[4792] | 575 | INTEGER(iwp) :: return_value !< Return value data_output_netcdf4 .. routines |
---|
[4779] | 576 | #if defined( __netcdf4 ) |
---|
[4792] | 577 | INTEGER(iwp) :: var_len |
---|
[4779] | 578 | #endif |
---|
[4778] | 579 | |
---|
[4792] | 580 | IF ( win_prt_i /= -1 ) THEN |
---|
| 581 | CALL part_io%sm_free_shared( win_prt_i ) |
---|
| 582 | ENDIF |
---|
| 583 | IF ( win_prt_r /= -1 ) THEN |
---|
| 584 | CALL part_io%sm_free_shared( win_prt_r ) |
---|
| 585 | ENDIF |
---|
[4778] | 586 | |
---|
[4792] | 587 | IF ( file_id /= -1 .AND. part_io%iam_io_pe ) THEN |
---|
| 588 | CALL netcdf4_finalize( 'parallel', file_id, return_value ) |
---|
| 589 | file_id = -1 |
---|
[4778] | 590 | |
---|
| 591 | #if defined( __netcdf4 ) |
---|
| 592 | ! |
---|
[4792] | 593 | !-- For yet unknown reasons it is not possible to write in parallel mode the time values to |
---|
| 594 | !-- NetCDF variable time. |
---|
| 595 | !-- This workaround closes the parallel file and writes the time values in sequential mode on |
---|
| 596 | !-- PE0. |
---|
| 597 | !-- kk This is a real quick and dirty workaround and the problem should be solved in the final |
---|
| 598 | !-- version !!! |
---|
| 599 | IF ( myid == 0 .AND. unlimited_dimension ) THEN |
---|
| 600 | ierr = NF90_OPEN( TRIM( file_name ), NF90_WRITE, file_id ) |
---|
| 601 | ierr = NF90_INQUIRE_DIMENSION( file_id, did%time, LEN = var_len) |
---|
[4778] | 602 | |
---|
[4792] | 603 | ierr = NF90_PUT_VAR( file_id, var_id%time, time_axis_values(1:var_len) ) |
---|
[4778] | 604 | |
---|
[4792] | 605 | ierr = NF90_CLOSE( file_id ) |
---|
| 606 | ENDIF |
---|
[4778] | 607 | #endif |
---|
[4792] | 608 | ENDIF |
---|
[4778] | 609 | |
---|
[4792] | 610 | RETURN |
---|
| 611 | END SUBROUTINE dop_finalize |
---|
[4778] | 612 | |
---|
[4792] | 613 | ! |
---|
| 614 | !--Private subroutines |
---|
[4778] | 615 | |
---|
[4792] | 616 | !--------------------------------------------------------------------------------------------------! |
---|
| 617 | ! Description: |
---|
| 618 | ! ------------ |
---|
[4778] | 619 | ! |
---|
[4792] | 620 | !--------------------------------------------------------------------------------------------------! |
---|
| 621 | ! |
---|
| 622 | !-- kk Not sure if necessary, but set ALL particle number to -1 |
---|
| 623 | SUBROUTINE set_indef_particle_nr |
---|
[4778] | 624 | |
---|
[4792] | 625 | IMPLICIT NONE |
---|
[4778] | 626 | |
---|
[4792] | 627 | INTEGER(iwp) :: i !< |
---|
| 628 | INTEGER(iwp) :: j !< |
---|
| 629 | INTEGER(iwp) :: k !< |
---|
| 630 | INTEGER(iwp) :: n !< |
---|
[4778] | 631 | |
---|
[4792] | 632 | DO i = nxl, nxr |
---|
| 633 | DO j = nys, nyn |
---|
| 634 | DO k = nzb+1, nzt |
---|
| 635 | DO n = 1, SIZE( grid_particles(k,j,i)%particles ) |
---|
| 636 | grid_particles(k,j,i)%particles(n)%particle_nr = -1 |
---|
| 637 | ENDDO |
---|
| 638 | ENDDO |
---|
| 639 | ENDDO |
---|
| 640 | ENDDO |
---|
[4778] | 641 | |
---|
[4792] | 642 | RETURN |
---|
| 643 | END SUBROUTINE set_indef_particle_nr |
---|
[4778] | 644 | |
---|
[4792] | 645 | !--------------------------------------------------------------------------------------------------! |
---|
| 646 | ! Description: |
---|
| 647 | ! ------------ |
---|
| 648 | !> Count particles scheduled for output. |
---|
| 649 | !> Here pts_increment and pts_percentage are used to select output particles. |
---|
| 650 | !--------------------------------------------------------------------------------------------------! |
---|
| 651 | SUBROUTINE count_output_particles (pcount) |
---|
[4778] | 652 | |
---|
[4792] | 653 | IMPLICIT NONE |
---|
[4778] | 654 | |
---|
[4792] | 655 | INTEGER(iwp) :: i !< |
---|
| 656 | INTEGER(iwp) :: j !< |
---|
| 657 | INTEGER(iwp) :: k !< |
---|
| 658 | INTEGER(iwp) :: n !< |
---|
| 659 | INTEGER(iwp) :: n_all !< count all particles for MOD function |
---|
| 660 | INTEGER(iwp), INTENT(OUT) :: pcount !< |
---|
[4778] | 661 | |
---|
[4792] | 662 | REAL(dp) :: finc |
---|
| 663 | REAL(dp) :: fcount |
---|
[4778] | 664 | |
---|
| 665 | |
---|
[4792] | 666 | pcount = 0 |
---|
| 667 | IF ( pts_increment == 1 ) THEN |
---|
| 668 | pcount = SUM( prt_count ) |
---|
| 669 | ELSE |
---|
| 670 | n_all = 0 |
---|
| 671 | DO i = nxl, nxr |
---|
| 672 | DO j = nys, nyn |
---|
| 673 | DO k = nzb+1, nzt |
---|
| 674 | DO n = 1, prt_count(k,j,i) |
---|
| 675 | IF ( MOD( n_all, pts_increment ) == 0 ) THEN |
---|
| 676 | pcount = pcount + 1 |
---|
| 677 | ENDIF |
---|
| 678 | n_all = n_all + 1 |
---|
| 679 | ENDDO |
---|
| 680 | ENDDO |
---|
| 681 | ENDDO |
---|
| 682 | ENDDO |
---|
| 683 | ENDIF |
---|
[4778] | 684 | |
---|
[4792] | 685 | IF ( pts_percentage < 100.0_wp ) THEN |
---|
[4778] | 686 | |
---|
[4792] | 687 | finc = pts_percentage / 100 |
---|
[4778] | 688 | |
---|
[4792] | 689 | pcount = 0 |
---|
| 690 | fcount = 0.0_wp |
---|
[4778] | 691 | |
---|
[4792] | 692 | DO i = nxl, nxr |
---|
| 693 | DO j = nys, nyn |
---|
| 694 | DO k = nzb+1, nzt |
---|
| 695 | DO n = 1, prt_count(k,j,i) |
---|
| 696 | fcount = fcount + finc |
---|
| 697 | IF ( pcount < INT( fcount ) ) THEN |
---|
| 698 | pcount = pcount + 1 |
---|
| 699 | ENDIF |
---|
| 700 | ENDDO |
---|
| 701 | ENDDO |
---|
| 702 | ENDDO |
---|
| 703 | ENDDO |
---|
[4778] | 704 | |
---|
[4792] | 705 | ENDIF |
---|
[4778] | 706 | |
---|
[4792] | 707 | RETURN |
---|
| 708 | END SUBROUTINE count_output_particles |
---|
[4778] | 709 | |
---|
[4792] | 710 | !--------------------------------------------------------------------------------------------------! |
---|
| 711 | ! Description: |
---|
| 712 | ! ------------ |
---|
| 713 | ! |
---|
| 714 | !--------------------------------------------------------------------------------------------------! |
---|
| 715 | SUBROUTINE dop_read_output_particle_list( nr_particles_out ) |
---|
[4778] | 716 | |
---|
[4792] | 717 | IMPLICIT NONE |
---|
[4778] | 718 | |
---|
[4792] | 719 | INTEGER(idp) :: dummy !< |
---|
| 720 | INTEGER(iwp) :: i !< |
---|
| 721 | INTEGER(iwp) :: istat !< |
---|
| 722 | INTEGER(iwp) :: iu !< |
---|
| 723 | INTEGER(iwp), INTENT(OUT) :: nr_particles_out |
---|
[4778] | 724 | |
---|
| 725 | |
---|
[4792] | 726 | iu = 345 |
---|
| 727 | istat = 0 |
---|
| 728 | nr_particles_out = 0 |
---|
[4778] | 729 | |
---|
[4792] | 730 | OPEN( UNIT=iu, FILE=TRIM( pts_id_file ) ) !kk should be changed to check_open |
---|
[4778] | 731 | |
---|
[4792] | 732 | ! |
---|
| 733 | !-- First stridem cout output particle |
---|
| 734 | DO WHILE( istat == 0 ) |
---|
| 735 | READ( iu, *, iostat=istat ) dummy |
---|
| 736 | nr_particles_out = nr_particles_out + 1 |
---|
| 737 | ENDDO |
---|
[4778] | 738 | |
---|
[4792] | 739 | nr_particles_out = nr_particles_out - 1 ! subtract 1 for end of file read |
---|
[4778] | 740 | |
---|
[4792] | 741 | ALLOCATE( part_id_list_file(nr_particles_out) ) |
---|
[4778] | 742 | |
---|
[4792] | 743 | REWIND( iu ) |
---|
| 744 | ! |
---|
| 745 | !-- Second stride, read particle ids for scheduled output particle. |
---|
| 746 | DO i = 1, nr_particles_out |
---|
| 747 | READ( iu, * ) part_id_list_file(i) |
---|
| 748 | ENDDO |
---|
[4778] | 749 | |
---|
[4792] | 750 | CLOSE( iu ) |
---|
[4778] | 751 | |
---|
[4792] | 752 | END SUBROUTINE dop_read_output_particle_list |
---|
[4778] | 753 | |
---|
[4792] | 754 | !--------------------------------------------------------------------------------------------------! |
---|
| 755 | ! Description: |
---|
| 756 | ! ------------ |
---|
| 757 | !> Set output particle number for selected active particles |
---|
| 758 | !--------------------------------------------------------------------------------------------------! |
---|
| 759 | SUBROUTINE set_particle_number |
---|
[4778] | 760 | |
---|
[4792] | 761 | IMPLICIT NONE |
---|
[4778] | 762 | |
---|
[4792] | 763 | INTEGER(iwp) :: i !< |
---|
| 764 | INTEGER(iwp) :: j !< |
---|
| 765 | INTEGER(iwp) :: k !< |
---|
| 766 | INTEGER(iwp) :: n !< |
---|
| 767 | INTEGER(iwp) :: n_all !< count all particles for MOD function |
---|
| 768 | INTEGER(iwp) :: particle_nr !< output particle number |
---|
| 769 | INTEGER(iwp) :: pcount !< local particle count in case of pts_percentage |
---|
[4778] | 770 | |
---|
[4792] | 771 | REAL(dp) :: fcount !< partical progress in %/100 |
---|
| 772 | REAL(dp) :: finc !< increment of particle |
---|
[4778] | 773 | |
---|
[4792] | 774 | |
---|
| 775 | pcount = 0 |
---|
| 776 | fcount = 0.0 |
---|
| 777 | |
---|
| 778 | particle_nr = start_local_numbering |
---|
| 779 | n_all = 0 |
---|
| 780 | DO i = nxl, nxr |
---|
| 781 | DO j = nys, nyn |
---|
| 782 | DO k = nzb+1, nzt |
---|
| 783 | IF ( pts_increment > 1 ) THEN |
---|
| 784 | DO n = 1, prt_count(k,j,i) |
---|
| 785 | IF ( MOD( n_all, pts_increment ) == 0 ) THEN |
---|
| 786 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
| 787 | particle_nr = particle_nr + 1 |
---|
| 788 | ELSE |
---|
| 789 | grid_particles(k,j,i)%particles(n)%particle_nr = -2 |
---|
| 790 | ENDIF |
---|
| 791 | n_all = n_all + 1 |
---|
| 792 | ENDDO |
---|
| 793 | ELSEIF ( pts_percentage < 100.0_wp ) THEN |
---|
| 794 | finc = pts_percentage / 100 |
---|
| 795 | |
---|
| 796 | DO n = 1, prt_count(k,j,i) |
---|
[4778] | 797 | ! |
---|
[4792] | 798 | !-- Eeach particle moves fraction on particle axis (i.e part percent == 80; move 0.8) |
---|
| 799 | !-- if increases next whole number, the particle is taken for output. |
---|
| 800 | fcount = fcount + finc |
---|
| 801 | IF ( pcount < INT( fcount ) ) THEN |
---|
| 802 | pcount = pcount + 1 |
---|
| 803 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
| 804 | particle_nr = particle_nr + 1 |
---|
| 805 | ELSE |
---|
| 806 | grid_particles(k,j,i)%particles(n)%particle_nr = -2 |
---|
| 807 | ENDIF |
---|
| 808 | ENDDO |
---|
| 809 | ELSE |
---|
| 810 | DO n = 1, prt_count(k,j,i) |
---|
| 811 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
| 812 | particle_nr = particle_nr + 1 |
---|
| 813 | ENDDO |
---|
| 814 | ENDIF |
---|
| 815 | ENDDO |
---|
| 816 | ENDDO |
---|
| 817 | ENDDO |
---|
[4778] | 818 | |
---|
[4792] | 819 | RETURN |
---|
| 820 | END SUBROUTINE set_particle_number |
---|
[4778] | 821 | |
---|
[4792] | 822 | !--------------------------------------------------------------------------------------------------! |
---|
| 823 | ! Description: |
---|
| 824 | ! ------------ |
---|
| 825 | ! |
---|
| 826 | !--------------------------------------------------------------------------------------------------! |
---|
| 827 | SUBROUTINE dop_find_particle_in_outlist |
---|
[4778] | 828 | |
---|
[4792] | 829 | IMPLICIT NONE |
---|
| 830 | |
---|
| 831 | INTEGER(iwp) :: i !< |
---|
[4778] | 832 | #if defined( __parallel ) |
---|
[4792] | 833 | INTEGER(iwp) :: ierr !< MPI error code |
---|
[4778] | 834 | #endif |
---|
[4792] | 835 | INTEGER(iwp) :: j !< |
---|
| 836 | INTEGER(iwp) :: k !< |
---|
| 837 | INTEGER(iwp) :: l !< |
---|
| 838 | INTEGER(iwp) :: n !< |
---|
| 839 | INTEGER(iwp) :: nr_part !< |
---|
[4778] | 840 | ! INTEGER, save :: icount=0 |
---|
| 841 | |
---|
| 842 | |
---|
[4792] | 843 | nr_part = 0 |
---|
| 844 | |
---|
[4778] | 845 | ! |
---|
[4792] | 846 | !-- If there is a long particle output list, for performance reason it may become necessary to |
---|
| 847 | !-- optimize the following loop. |
---|
[4778] | 848 | ! |
---|
[4792] | 849 | !-- Decode the particle id in i,j,k,n. |
---|
| 850 | !-- Split serach, i.e search first in i, then in j ... |
---|
| 851 | DO i = nxl, nxr |
---|
| 852 | DO j = nys, nyn |
---|
| 853 | DO k = nzb+1, nzt |
---|
| 854 | DO n = 1, prt_count(k,j,i) |
---|
| 855 | DO l = 1, SIZE( part_id_list_file ) |
---|
| 856 | IF ( grid_particles(k,j,i)%particles(n)%id == part_id_list_file(l) ) THEN |
---|
| 857 | grid_particles(k,j,i)%particles(n)%particle_nr = l |
---|
| 858 | nr_part = nr_part + 1 |
---|
| 859 | ENDIF |
---|
| 860 | ENDDO |
---|
| 861 | ENDDO |
---|
| 862 | ENDDO |
---|
| 863 | ENDDO |
---|
| 864 | ENDDO |
---|
[4778] | 865 | |
---|
| 866 | #if defined( __parallel ) |
---|
[4792] | 867 | CALL MPI_ALLREDUCE( nr_part, initial_number_of_active_particles, 1, MPI_INTEGER, MPI_SUM, & |
---|
| 868 | comm2d, ierr ) |
---|
[4778] | 869 | #else |
---|
[4792] | 870 | initial_number_of_active_particles = nr_part |
---|
[4778] | 871 | #endif |
---|
| 872 | |
---|
[4792] | 873 | END SUBROUTINE dop_find_particle_in_outlist |
---|
[4778] | 874 | |
---|
[4792] | 875 | ! |
---|
[4778] | 876 | !-- Netcdf Setup |
---|
| 877 | ! |
---|
[4792] | 878 | !--------------------------------------------------------------------------------------------------! |
---|
| 879 | ! Description: |
---|
| 880 | ! ------------ |
---|
| 881 | !> Open NetCDF File DATA_1D_PTS_NETCDF |
---|
| 882 | !> Define Dimensions and variables |
---|
| 883 | !> Write constant variables |
---|
| 884 | !--------------------------------------------------------------------------------------------------! |
---|
| 885 | SUBROUTINE dop_netcdf_setup |
---|
[4778] | 886 | |
---|
[4792] | 887 | IMPLICIT NONE |
---|
[4778] | 888 | |
---|
[4792] | 889 | INTEGER, PARAMETER :: global_id_in_file = -1 |
---|
[4778] | 890 | |
---|
[4792] | 891 | INTEGER(iwp) :: i |
---|
| 892 | INTEGER(iwp) :: fix_ind |
---|
| 893 | INTEGER(iwp) :: return_value |
---|
| 894 | INTEGER(iwp) :: var_ind |
---|
[4778] | 895 | |
---|
[4792] | 896 | INTEGER, DIMENSION(2) :: dimension_ids |
---|
[4778] | 897 | |
---|
[4792] | 898 | LOGICAL :: const_flag |
---|
[4778] | 899 | |
---|
| 900 | |
---|
[4792] | 901 | nr_time_values = end_time / dt_dopts + 1 !kk has to be adapted to formular of 3d output |
---|
| 902 | |
---|
| 903 | IF ( part_io%iam_io_pe ) THEN |
---|
| 904 | CALL netcdf4_init_module( "", part_io%comm_io, 0, 9, .TRUE., -1 ) |
---|
| 905 | |
---|
| 906 | file_name = 'DATA_1D_PTS_NETCDF' |
---|
[4778] | 907 | #if defined( __parallel ) |
---|
[4792] | 908 | CALL netcdf4_open_file( 'parallel', TRIM( file_name ), file_id, return_value ) |
---|
[4778] | 909 | #else |
---|
[4792] | 910 | CALL netcdf4_open_file( 'serial', TRIM( file_name ), file_id, return_value ) |
---|
[4778] | 911 | #endif |
---|
[4792] | 912 | |
---|
[4778] | 913 | ! |
---|
[4792] | 914 | !-- Global attributes |
---|
| 915 | CALL netcdf4_write_attribute( 'parallel', file_id, global_id_in_file, 'comment', & |
---|
| 916 | 'Particle ouput created by PALM module data_output_particle', & |
---|
| 917 | return_value=return_value ) |
---|
[4778] | 918 | |
---|
[4792] | 919 | CALL netcdf4_write_attribute( 'parallel', file_id, global_id_in_file, & |
---|
| 920 | 'initial_nr_particles', & |
---|
| 921 | value_int32=initial_number_of_active_particles, & |
---|
| 922 | return_value=return_value ) |
---|
[4778] | 923 | ! |
---|
[4792] | 924 | !-- Define dimensions |
---|
| 925 | CALL netcdf4_init_dimension( 'parallel', file_id, did%prt, var_id%prt, 'prt','int32' , & |
---|
| 926 | nr_particles_out, .TRUE., return_value ) |
---|
[4778] | 927 | |
---|
[4792] | 928 | IF ( unlimited_dimension ) THEN |
---|
| 929 | CALL netcdf4_init_dimension( 'parallel', file_id, did%time, var_id%time, 'time','real32',& |
---|
| 930 | -1, .TRUE., return_value ) |
---|
| 931 | ALLOCATE( time_axis_values(nr_time_values) ) |
---|
| 932 | ELSE |
---|
| 933 | CALL netcdf4_init_dimension( 'parallel', file_id, did%time, var_id%time, 'time','real32',& |
---|
| 934 | nr_time_values, .TRUE., return_value ) |
---|
| 935 | ENDIF |
---|
| 936 | ENDIF |
---|
[4778] | 937 | ! |
---|
[4792] | 938 | !-- Variables without time axis |
---|
| 939 | !-- These variables will always be written only once at the beginning of the file |
---|
| 940 | dimension_ids(1) = did%prt |
---|
[4778] | 941 | |
---|
[4792] | 942 | fix_ind = 1 |
---|
| 943 | fix_variables(fix_ind)%name = 'origin_x' |
---|
| 944 | fix_variables(fix_ind)%units = 'meter' |
---|
[4778] | 945 | |
---|
[4792] | 946 | IF ( part_io%iam_io_pe ) THEN |
---|
| 947 | CALL netcdf4_init_variable( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 948 | fix_variables(fix_ind)%name, 'real32', dimension_ids(1:1), & |
---|
| 949 | .FALSE., return_value ) |
---|
[4778] | 950 | |
---|
[4792] | 951 | CALL netcdf4_write_attribute( 'parallel', file_id, fix_variables(fix_ind)%var_id, 'units', & |
---|
| 952 | value_char=TRIM( fix_variables(fix_ind)%units ), & |
---|
| 953 | return_value=return_value ) |
---|
| 954 | ENDIF |
---|
[4778] | 955 | |
---|
[4792] | 956 | fix_ind = fix_ind + 1 |
---|
| 957 | fix_variables(fix_ind)%name = 'origin_y' |
---|
| 958 | fix_variables(fix_ind)%units = 'meter' |
---|
[4778] | 959 | |
---|
[4792] | 960 | IF ( part_io%iam_io_pe ) THEN |
---|
| 961 | CALL netcdf4_init_variable( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 962 | fix_variables(fix_ind)%name, 'real32', dimension_ids(1:1), & |
---|
| 963 | .FALSE., return_value ) |
---|
[4778] | 964 | |
---|
[4792] | 965 | CALL netcdf4_write_attribute( 'parallel', file_id, fix_variables(fix_ind)%var_id, 'units', & |
---|
| 966 | value_char=TRIM( fix_variables(fix_ind)%units ), & |
---|
| 967 | return_value=return_value ) |
---|
[4778] | 968 | |
---|
[4792] | 969 | ENDIF |
---|
[4778] | 970 | |
---|
[4792] | 971 | fix_ind = fix_ind + 1 |
---|
| 972 | fix_variables(fix_ind)%name = 'origin_z' |
---|
| 973 | fix_variables(fix_ind)%units = 'meter' |
---|
[4778] | 974 | |
---|
[4792] | 975 | IF ( part_io%iam_io_pe ) THEN |
---|
| 976 | CALL netcdf4_init_variable( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 977 | fix_variables(fix_ind)%name, 'real32', dimension_ids(1:1), & |
---|
| 978 | .FALSE., return_value ) |
---|
[4778] | 979 | |
---|
[4792] | 980 | CALL netcdf4_write_attribute( 'parallel', file_id, fix_variables(fix_ind)%var_id, 'units', & |
---|
| 981 | value_char=TRIM( fix_variables(fix_ind)%units ), & |
---|
| 982 | return_value=return_value ) |
---|
| 983 | ENDIF |
---|
[4778] | 984 | |
---|
| 985 | ! |
---|
[4792] | 986 | !-- These variables are written if name end with _const' |
---|
| 987 | DO i = 1, SIZE( data_output_pts ) |
---|
| 988 | const_flag = ( INDEX( TRIM( data_output_pts(i) ), '_const' ) > 0 ) |
---|
| 989 | IF ( LEN( TRIM( data_output_pts(i) ) ) > 0 .AND. const_flag) THEN |
---|
| 990 | fix_ind = fix_ind + 1 |
---|
| 991 | fix_variables(fix_ind)%name = TRIM( data_output_pts(i) ) |
---|
[4778] | 992 | |
---|
[4792] | 993 | SELECT CASE ( TRIM( fix_variables(fix_ind)%name ) ) |
---|
| 994 | CASE ( 'radius_const' ) |
---|
| 995 | fix_variables(fix_ind)%units = 'meter' |
---|
| 996 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 997 | CASE ( 'aux1_const' ) |
---|
| 998 | fix_variables(fix_ind)%units = 'depend_on_setup' |
---|
| 999 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 1000 | CASE ( 'aux2_const' ) |
---|
| 1001 | fix_variables(fix_ind)%units = 'depend_on_setup' |
---|
| 1002 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 1003 | CASE ( 'rvar1_const' ) |
---|
| 1004 | fix_variables(fix_ind)%units = 'depend_on_setup' |
---|
| 1005 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 1006 | CASE ( 'rvar2_const' ) |
---|
| 1007 | fix_variables(fix_ind)%units = 'depend_on_setup' |
---|
| 1008 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 1009 | CASE ( 'rvar3_const' ) |
---|
| 1010 | fix_variables(fix_ind)%units = 'depend_on_setup' |
---|
| 1011 | fix_variables(fix_ind)%is_integer = .FALSE. |
---|
| 1012 | END SELECT |
---|
[4778] | 1013 | |
---|
[4792] | 1014 | IF ( part_io%iam_io_pe ) THEN |
---|
| 1015 | IF ( fix_variables(fix_ind)%is_integer ) THEN |
---|
| 1016 | CALL netcdf4_init_variable( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 1017 | fix_variables(fix_ind)%name, 'int32', & |
---|
| 1018 | dimension_ids(1:1), .FALSE., return_value ) |
---|
| 1019 | ELSE |
---|
| 1020 | CALL netcdf4_init_variable( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 1021 | fix_variables(fix_ind)%name, 'real32', & |
---|
| 1022 | dimension_ids(1:1), .FALSE., return_value ) |
---|
| 1023 | ENDIF |
---|
[4778] | 1024 | |
---|
[4792] | 1025 | CALL netcdf4_write_attribute( 'parallel', file_id, fix_variables(fix_ind)%var_id, & |
---|
| 1026 | 'units', & |
---|
| 1027 | value_char=TRIM( fix_variables(fix_ind)%units ), & |
---|
| 1028 | return_value=return_value ) |
---|
| 1029 | ENDIF |
---|
[4778] | 1030 | |
---|
[4792] | 1031 | ENDIF |
---|
| 1032 | ENDDO |
---|
[4778] | 1033 | |
---|
[4792] | 1034 | nr_fix_variables = fix_ind |
---|
[4778] | 1035 | ! |
---|
[4792] | 1036 | !-- Variables time axis |
---|
| 1037 | !-- These variables will always be written in the time loop |
---|
| 1038 | dimension_ids(1) = did%prt |
---|
| 1039 | dimension_ids(2) = did%time |
---|
[4778] | 1040 | |
---|
[4792] | 1041 | var_ind = 0 |
---|
[4778] | 1042 | |
---|
[4792] | 1043 | DO i = 1, SIZE( data_output_pts ) |
---|
| 1044 | const_flag = ( INDEX( TRIM( data_output_pts(i) ), '_const' ) > 0 ) |
---|
| 1045 | IF ( LEN( TRIM( data_output_pts(i) ) ) > 0 .AND. .NOT. const_flag ) THEN |
---|
| 1046 | var_ind = var_ind + 1 |
---|
| 1047 | variables(var_ind)%name = TRIM( data_output_pts(i) ) |
---|
[4778] | 1048 | |
---|
[4792] | 1049 | SELECT CASE ( TRIM( variables(var_ind)%name) ) |
---|
| 1050 | CASE ( 'id' ) |
---|
| 1051 | variables(var_ind)%name = TRIM( data_output_pts(i) ) // '_low' |
---|
| 1052 | variables(var_ind)%units = 'Number' |
---|
| 1053 | variables(var_ind)%is_integer = .TRUE. |
---|
| 1054 | IF ( part_io%iam_io_pe ) THEN |
---|
| 1055 | CALL netcdf4_init_variable( 'parallel', file_id, variables(var_ind)%var_id, & |
---|
| 1056 | variables(var_ind)%name, 'int32', & |
---|
| 1057 | dimension_ids(1:2), .FALSE., return_value ) |
---|
| 1058 | CALL netcdf4_write_attribute( 'parallel', file_id, variables(var_ind)%var_id, & |
---|
| 1059 | 'units', & |
---|
| 1060 | value_char=TRIM( variables(var_ind)%units ), & |
---|
| 1061 | return_value=return_value ) |
---|
| 1062 | ENDIF |
---|
[4778] | 1063 | |
---|
[4792] | 1064 | var_ind = var_ind + 1 |
---|
| 1065 | variables(var_ind)%name = TRIM( data_output_pts(i) ) // '_high' |
---|
| 1066 | variables(var_ind)%units = 'Number' |
---|
| 1067 | variables(var_ind)%is_integer = .TRUE. |
---|
| 1068 | CASE ( 'particle_nr' ) |
---|
| 1069 | variables(var_ind)%units = 'Number' |
---|
| 1070 | variables(var_ind)%is_integer = .TRUE. |
---|
| 1071 | CASE ( 'class' ) |
---|
| 1072 | variables(var_ind)%units = 'Number' |
---|
| 1073 | variables(var_ind)%is_integer = .TRUE. |
---|
| 1074 | CASE ( 'group' ) |
---|
| 1075 | variables(var_ind)%units = 'Number' |
---|
| 1076 | variables(var_ind)%is_integer = .TRUE. |
---|
| 1077 | CASE ( 'x' ) |
---|
| 1078 | variables(var_ind)%units = 'meter' |
---|
| 1079 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1080 | CASE ( 'y' ) |
---|
| 1081 | variables(var_ind)%units = 'meter' |
---|
| 1082 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1083 | CASE ( 'z' ) |
---|
| 1084 | variables(var_ind)%units = 'meter' |
---|
| 1085 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1086 | CASE ( 'speed_x' ) |
---|
| 1087 | variables(var_ind)%units = 'm/s' |
---|
| 1088 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1089 | CASE ( 'speed_y' ) |
---|
| 1090 | variables(var_ind)%units = 'm/s' |
---|
| 1091 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1092 | CASE ( 'speed_z' ) |
---|
| 1093 | variables(var_ind)%units = 'm/s' |
---|
| 1094 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1095 | CASE ( 'radius' ) |
---|
| 1096 | variables(var_ind)%units = 'meter' |
---|
| 1097 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1098 | CASE ( 'age' ) |
---|
| 1099 | variables(var_ind)%units = 'sec' |
---|
| 1100 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1101 | CASE ( 'age_m' ) |
---|
| 1102 | variables(var_ind)%units = 'sec' |
---|
| 1103 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1104 | CASE ( 'dt_sum' ) |
---|
| 1105 | variables(var_ind)%units = 'sec' |
---|
| 1106 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1107 | CASE ( 'e_m' ) |
---|
| 1108 | variables(var_ind)%units = 'Ws' |
---|
| 1109 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1110 | CASE( 'weight_factor' ) |
---|
| 1111 | variables(var_ind)%units = 'factor' |
---|
| 1112 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1113 | CASE ( 'aux1' ) |
---|
| 1114 | variables(var_ind)%units = 'depend_on_setup' |
---|
| 1115 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1116 | CASE ( 'aux2' ) |
---|
| 1117 | variables(var_ind)%units = 'depend_on_setup' |
---|
| 1118 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1119 | CASE ( 'rvar1' ) |
---|
| 1120 | variables(var_ind)%units = 'depend_on_setup' |
---|
| 1121 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1122 | CASE ( 'rvar2' ) |
---|
| 1123 | variables(var_ind)%units = 'depend_on_setup' |
---|
| 1124 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1125 | CASE ( 'rvar3' ) |
---|
| 1126 | variables(var_ind)%units = 'depend_on_setup' |
---|
| 1127 | variables(var_ind)%is_integer = .FALSE. |
---|
| 1128 | END SELECT |
---|
[4778] | 1129 | |
---|
[4792] | 1130 | IF ( part_io%iam_io_pe ) THEN |
---|
| 1131 | IF ( variables(var_ind)%is_integer ) THEN |
---|
| 1132 | CALL netcdf4_init_variable( 'parallel', file_id, variables(var_ind)%var_id, & |
---|
| 1133 | variables(var_ind)%name, 'int32', dimension_ids(1:2), & |
---|
| 1134 | .FALSE., return_value ) |
---|
| 1135 | ELSE |
---|
| 1136 | CALL netcdf4_init_variable( 'parallel', file_id, variables(var_ind)%var_id, & |
---|
| 1137 | variables(var_ind)%name, 'real32', dimension_ids(1:2), & |
---|
| 1138 | .FALSE., return_value ) |
---|
| 1139 | ENDIF |
---|
[4778] | 1140 | |
---|
[4792] | 1141 | CALL netcdf4_write_attribute( 'parallel', file_id, variables(var_ind)%var_id, 'units',& |
---|
| 1142 | value_char=TRIM( variables(var_ind)%units ), & |
---|
| 1143 | return_value=return_value ) |
---|
| 1144 | ENDIF |
---|
[4778] | 1145 | |
---|
[4792] | 1146 | ENDIF |
---|
| 1147 | ENDDO |
---|
[4778] | 1148 | |
---|
[4792] | 1149 | nr_variables = var_ind |
---|
[4778] | 1150 | |
---|
[4792] | 1151 | IF ( part_io%iam_io_pe ) THEN |
---|
| 1152 | CALL netcdf4_stop_file_header_definition( 'parallel', file_id, return_value ) |
---|
| 1153 | ENDIF |
---|
[4778] | 1154 | |
---|
[4792] | 1155 | CALL dop_write_axis |
---|
[4778] | 1156 | |
---|
[4792] | 1157 | RETURN |
---|
[4778] | 1158 | |
---|
[4792] | 1159 | CONTAINS |
---|
[4778] | 1160 | |
---|
[4792] | 1161 | !--------------------------------------------------------------------------------------------------! |
---|
| 1162 | ! Description: |
---|
| 1163 | ! ------------ |
---|
| 1164 | ! |
---|
| 1165 | !--------------------------------------------------------------------------------------------------! |
---|
| 1166 | SUBROUTINE dop_write_axis |
---|
[4778] | 1167 | |
---|
[4792] | 1168 | IMPLICIT NONE |
---|
[4778] | 1169 | |
---|
[4792] | 1170 | INTEGER(iwp) :: i |
---|
| 1171 | INTEGER(iwp) :: return_value !< Return value data_output_netcdf4 .. routines |
---|
[4778] | 1172 | |
---|
[4792] | 1173 | INTEGER,DIMENSION(1) :: bounds_origin, bounds_start, value_counts |
---|
[4778] | 1174 | |
---|
[4792] | 1175 | INTEGER, POINTER, CONTIGUOUS, DIMENSION(:) :: prt_val |
---|
[4778] | 1176 | |
---|
| 1177 | |
---|
[4792] | 1178 | bounds_origin = 1 |
---|
| 1179 | bounds_start(1) = 1 |
---|
[4778] | 1180 | |
---|
[4792] | 1181 | IF ( myid == 0 ) THEN |
---|
[4778] | 1182 | |
---|
[4792] | 1183 | ALLOCATE( prt_val(nr_particles_out) ) |
---|
| 1184 | DO i = 1, nr_particles_out |
---|
| 1185 | prt_val(i) = i |
---|
| 1186 | ENDDO |
---|
| 1187 | value_counts(1) = nr_particles_out |
---|
[4778] | 1188 | |
---|
[4792] | 1189 | CALL netcdf4_write_variable( 'parallel', file_id, var_id%prt, bounds_start, & |
---|
| 1190 | value_counts, bounds_origin, .TRUE., & |
---|
| 1191 | values_int32_1d=prt_val, return_value=return_value) |
---|
[4778] | 1192 | |
---|
[4792] | 1193 | DEALLOCATE( prt_val ) |
---|
| 1194 | ENDIF |
---|
[4778] | 1195 | |
---|
[4792] | 1196 | RETURN |
---|
| 1197 | END SUBROUTINE dop_write_axis |
---|
[4778] | 1198 | |
---|
[4792] | 1199 | END SUBROUTINE dop_netcdf_setup |
---|
[4778] | 1200 | |
---|
[4792] | 1201 | !--------------------------------------------------------------------------------------------------! |
---|
| 1202 | ! Description: |
---|
| 1203 | ! ------------ |
---|
| 1204 | !> Write constant variables |
---|
| 1205 | !--------------------------------------------------------------------------------------------------! |
---|
| 1206 | SUBROUTINE dop_write_fixed_variables |
---|
[4778] | 1207 | |
---|
[4792] | 1208 | IMPLICIT NONE |
---|
[4778] | 1209 | |
---|
[4792] | 1210 | INTEGER(iwp) :: i ! |
---|
| 1211 | INTEGER(iwp) :: return_value ! |
---|
| 1212 | |
---|
| 1213 | INTEGER(iwp),DIMENSION(1) :: bounds_origin, bounds_start, value_counts |
---|
| 1214 | |
---|
| 1215 | |
---|
| 1216 | bounds_origin(1) = 1 |
---|
| 1217 | bounds_start(1) = io_start_index |
---|
| 1218 | value_counts(1) = io_end_index - io_start_index + 1 |
---|
| 1219 | |
---|
| 1220 | |
---|
| 1221 | DO i = 1, nr_fix_variables |
---|
| 1222 | |
---|
[4778] | 1223 | #if defined( __netcdf4 ) |
---|
[4792] | 1224 | IF ( fix_variables(i)%is_integer ) THEN |
---|
| 1225 | out_buf_i = NF90_FILL_INT |
---|
| 1226 | ELSE |
---|
| 1227 | out_buf_r = NF90_FILL_REAL |
---|
| 1228 | ENDIF |
---|
[4778] | 1229 | #endif |
---|
| 1230 | |
---|
[4792] | 1231 | CALL dop_fill_out_buf( fix_variables(i) ) |
---|
[4778] | 1232 | |
---|
[4792] | 1233 | CALL dop_get_remote_particle( fix_variables(i)%is_integer ) |
---|
[4778] | 1234 | |
---|
[4792] | 1235 | CALL part_io%sm_node_barrier( ) |
---|
| 1236 | IF ( part_io%iam_io_pe ) THEN |
---|
| 1237 | IF ( fix_variables(i)%is_integer ) THEN |
---|
| 1238 | CALL netcdf4_write_variable( 'parallel', file_id, fix_variables(i)%var_id, & |
---|
| 1239 | bounds_start, value_counts, bounds_origin, .FALSE., & |
---|
| 1240 | values_int32_1d=out_buf_i, return_value=return_value) |
---|
| 1241 | ELSE |
---|
| 1242 | CALL netcdf4_write_variable( 'parallel', file_id, fix_variables(i)%var_id, & |
---|
| 1243 | bounds_start, value_counts, bounds_origin, .FALSE., & |
---|
| 1244 | values_real32_1d=out_buf_r, return_value=return_value) |
---|
| 1245 | ENDIF |
---|
| 1246 | ENDIF |
---|
| 1247 | CALL part_io%sm_node_barrier( ) |
---|
| 1248 | ENDDO |
---|
[4778] | 1249 | |
---|
[4792] | 1250 | RETURN |
---|
| 1251 | END SUBROUTINE dop_write_fixed_variables |
---|
[4778] | 1252 | |
---|
[4792] | 1253 | !--------------------------------------------------------------------------------------------------! |
---|
| 1254 | ! Description: |
---|
| 1255 | ! ------------ |
---|
| 1256 | ! |
---|
| 1257 | !--------------------------------------------------------------------------------------------------! |
---|
| 1258 | SUBROUTINE dop_delete_particle_number |
---|
[4778] | 1259 | |
---|
[4792] | 1260 | IMPLICIT NONE |
---|
[4778] | 1261 | |
---|
[4792] | 1262 | INTEGER(iwp) :: i !< |
---|
| 1263 | INTEGER(iwp) :: j !< |
---|
| 1264 | INTEGER(iwp) :: k !< |
---|
| 1265 | INTEGER(iwp) :: n !< |
---|
| 1266 | |
---|
[4778] | 1267 | ! |
---|
[4792] | 1268 | !-- Delete inactive particles, i.e. all particles with particle_mask == .FALSE.. |
---|
| 1269 | !-- Get an output particle nr of -1. |
---|
| 1270 | !-- kk Not sure if it is required here or already done in lagrangian_particle_model_mod before |
---|
| 1271 | !-- this call. |
---|
| 1272 | remote_nr_particles = 0 |
---|
| 1273 | DO i = nxl, nxr |
---|
| 1274 | DO j = nys, nyn |
---|
| 1275 | DO k = nzb+1, nzt |
---|
| 1276 | DO n = 1, prt_count(k,j,i) |
---|
| 1277 | IF ( .NOT. grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1278 | grid_particles(k,j,i)%particles(n)%particle_nr = -1 |
---|
| 1279 | ENDIF |
---|
| 1280 | ENDDO |
---|
| 1281 | ENDDO |
---|
| 1282 | ENDDO |
---|
| 1283 | ENDDO |
---|
[4778] | 1284 | |
---|
[4792] | 1285 | RETURN |
---|
| 1286 | END SUBROUTINE dop_delete_particle_number |
---|
[4778] | 1287 | |
---|
[4792] | 1288 | !--------------------------------------------------------------------------------------------------! |
---|
| 1289 | ! Description: |
---|
| 1290 | ! ------------ |
---|
| 1291 | ! |
---|
| 1292 | !--------------------------------------------------------------------------------------------------! |
---|
| 1293 | SUBROUTINE dop_newly_generated_particles |
---|
[4778] | 1294 | |
---|
[4792] | 1295 | IMPLICIT NONE |
---|
[4778] | 1296 | |
---|
[4792] | 1297 | INTEGER(iwp) :: i !< |
---|
[4778] | 1298 | #if defined( __parallel ) |
---|
[4792] | 1299 | INTEGER(iwp) :: ierr !< MPI error code |
---|
[4778] | 1300 | #endif |
---|
[4792] | 1301 | INTEGER(iwp) :: j !< |
---|
| 1302 | INTEGER(iwp) :: k !< |
---|
| 1303 | INTEGER(iwp) :: n !< |
---|
| 1304 | INTEGER(iwp) :: n_all !< count all particles for MOD function |
---|
| 1305 | INTEGER(iwp) :: nr_new_particle !< |
---|
| 1306 | INTEGER(iwp) :: particle_nr !< |
---|
| 1307 | INTEGER(iwp) :: start_new_numbering |
---|
[4778] | 1308 | |
---|
[4792] | 1309 | INTEGER(iwp),DIMENSION(0:numprocs-1) :: nr_particles_new_r |
---|
| 1310 | INTEGER(iwp),DIMENSION(0:numprocs-1) :: nr_particles_new_s |
---|
[4778] | 1311 | |
---|
[4792] | 1312 | REAL(dp) :: fcount |
---|
| 1313 | REAL(dp) :: finc |
---|
| 1314 | |
---|
| 1315 | |
---|
[4778] | 1316 | ! |
---|
[4792] | 1317 | !-- Count Number of Newly Generated particles. |
---|
| 1318 | !-- Condition for a newparticle: particle_mask = .TRUE. and particle nr of -1. |
---|
[4778] | 1319 | ! |
---|
[4792] | 1320 | !-- For performance reasons, this subroutine may be combined later with dop_delete_particle_number. |
---|
| 1321 | nr_new_particle = 0 |
---|
[4778] | 1322 | |
---|
[4792] | 1323 | IF ( pts_increment > 1 ) THEN |
---|
| 1324 | n_all = 0 |
---|
| 1325 | DO i = nxl, nxr |
---|
| 1326 | DO j = nys, nyn |
---|
| 1327 | DO k = nzb+1, nzt |
---|
| 1328 | DO n = 1, prt_count(k,j,i) |
---|
| 1329 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1330 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1331 | IF ( MOD( n_all, pts_increment ) == 0 ) THEN |
---|
| 1332 | nr_new_particle = nr_new_particle + 1 |
---|
| 1333 | ENDIF |
---|
| 1334 | n_all = n_all + 1 |
---|
| 1335 | ENDIF |
---|
| 1336 | ENDIF |
---|
| 1337 | ENDDO |
---|
| 1338 | ENDDO |
---|
| 1339 | ENDDO |
---|
| 1340 | ENDDO |
---|
| 1341 | ELSEIF ( pts_percentage < 100.0_wp ) THEN |
---|
| 1342 | finc = pts_percentage / 100 |
---|
| 1343 | fcount = 0.0 |
---|
[4778] | 1344 | |
---|
[4792] | 1345 | DO i = nxl, nxr |
---|
| 1346 | DO j = nys, nyn |
---|
| 1347 | DO k = nzb+1, nzt |
---|
| 1348 | DO n = 1, prt_count(k,j,i) |
---|
| 1349 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1350 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1351 | fcount = fcount + finc |
---|
| 1352 | IF ( nr_new_particle < INT( fcount ) ) THEN |
---|
| 1353 | nr_new_particle = nr_new_particle + 1 |
---|
| 1354 | ENDIF |
---|
| 1355 | ENDIF |
---|
| 1356 | ENDIF |
---|
| 1357 | ENDDO |
---|
| 1358 | ENDDO |
---|
| 1359 | ENDDO |
---|
| 1360 | ENDDO |
---|
[4778] | 1361 | |
---|
[4792] | 1362 | ELSE |
---|
| 1363 | DO i = nxl, nxr |
---|
| 1364 | DO j = nys, nyn |
---|
| 1365 | DO k = nzb+1, nzt |
---|
| 1366 | DO n = 1, prt_count(k,j,i) |
---|
| 1367 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1368 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1369 | nr_new_particle = nr_new_particle + 1 |
---|
| 1370 | ENDIF |
---|
| 1371 | ENDIF |
---|
| 1372 | ENDDO |
---|
| 1373 | ENDDO |
---|
| 1374 | ENDDO |
---|
| 1375 | ENDDO |
---|
| 1376 | ENDIF |
---|
[4778] | 1377 | ! |
---|
[4792] | 1378 | !-- Determine start number of new particles on eac thread. |
---|
| 1379 | nr_particles_new_s = 0 |
---|
| 1380 | nr_particles_new_s(myid) = nr_new_particle |
---|
[4778] | 1381 | |
---|
| 1382 | #if defined( __parallel ) |
---|
[4792] | 1383 | CALL MPI_ALLREDUCE( nr_particles_new_s, nr_particles_new_r, SIZE( nr_particles_new_s ), & |
---|
| 1384 | MPI_INTEGER, MPI_SUM, comm2d, ierr ) |
---|
[4778] | 1385 | #else |
---|
[4792] | 1386 | nr_particles_new_r = nr_particles_new_s |
---|
[4778] | 1387 | #endif |
---|
| 1388 | ! |
---|
[4792] | 1389 | !-- Abortion if selected particles from new particle set would exceed particle axis of output |
---|
| 1390 | !-- changed by JS. |
---|
| 1391 | IF ( ( SUM( nr_particles_new_r ) + initial_number_of_active_particles ) > nr_particles_out ) & |
---|
| 1392 | THEN |
---|
| 1393 | RETURN |
---|
| 1394 | ENDIF |
---|
[4778] | 1395 | |
---|
[4792] | 1396 | start_new_numbering = initial_number_of_active_particles + 1 |
---|
[4778] | 1397 | |
---|
[4792] | 1398 | IF ( myid > 0) THEN |
---|
| 1399 | DO i = 1, numprocs-1 |
---|
| 1400 | start_new_numbering = start_new_numbering + nr_particles_new_r(i-1) |
---|
| 1401 | IF ( myid == i ) EXIT |
---|
| 1402 | ENDDO |
---|
| 1403 | ENDIF |
---|
[4778] | 1404 | |
---|
[4792] | 1405 | initial_number_of_active_particles = initial_number_of_active_particles + & |
---|
| 1406 | SUM( nr_particles_new_r ) |
---|
[4778] | 1407 | |
---|
[4792] | 1408 | dop_last_active_particle = initial_number_of_active_particles |
---|
[4778] | 1409 | ! |
---|
[4792] | 1410 | !-- Set number of new particles |
---|
| 1411 | particle_nr = start_new_numbering |
---|
| 1412 | nr_new_particle = 0 |
---|
[4778] | 1413 | |
---|
[4792] | 1414 | IF ( pts_increment > 1 ) THEN |
---|
| 1415 | n_all = 0 |
---|
| 1416 | DO i = nxl, nxr |
---|
| 1417 | DO j = nys, nyn |
---|
| 1418 | DO k = nzb+1, nzt |
---|
| 1419 | DO n = 1, prt_count(k,j,i) |
---|
| 1420 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask) THEN |
---|
| 1421 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1422 | IF ( MOD( n_all, pts_increment ) == 0 ) THEN |
---|
| 1423 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
| 1424 | particle_nr = particle_nr + 1 |
---|
| 1425 | ELSE |
---|
| 1426 | grid_particles(k,j,i)%particles(n)%particle_nr = -2 |
---|
| 1427 | ENDIF |
---|
| 1428 | n_all = n_all + 1 |
---|
| 1429 | ENDIF |
---|
| 1430 | ENDIF |
---|
| 1431 | ENDDO |
---|
| 1432 | ENDDO |
---|
| 1433 | ENDDO |
---|
| 1434 | ENDDO |
---|
| 1435 | ELSEIF ( pts_percentage < 100.0_wp ) THEN |
---|
| 1436 | finc = pts_percentage / 100 |
---|
| 1437 | fcount = 0.0_wp |
---|
[4778] | 1438 | |
---|
[4792] | 1439 | DO i = nxl, nxr |
---|
| 1440 | DO j = nys, nyn |
---|
| 1441 | DO k = nzb+1, nzt |
---|
| 1442 | DO n = 1, prt_count(k,j,i) |
---|
| 1443 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1444 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1445 | fcount = fcount + finc |
---|
| 1446 | IF ( nr_new_particle < INT( fcount ) ) THEN |
---|
[4778] | 1447 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
[4792] | 1448 | particle_nr = particle_nr + 1 |
---|
| 1449 | nr_new_particle = nr_new_particle + 1 |
---|
| 1450 | ELSE |
---|
| 1451 | grid_particles(k,j,i)%particles(n)%particle_nr = -2 |
---|
| 1452 | ENDIF |
---|
| 1453 | ENDIF |
---|
| 1454 | ENDIF |
---|
| 1455 | ENDDO |
---|
| 1456 | ENDDO |
---|
| 1457 | ENDDO |
---|
| 1458 | ENDDO |
---|
| 1459 | ELSE |
---|
| 1460 | DO i = nxl, nxr |
---|
| 1461 | DO j = nys, nyn |
---|
| 1462 | DO k = nzb+1, nzt |
---|
| 1463 | DO n = 1, prt_count(k,j,i) |
---|
| 1464 | IF ( grid_particles(k,j,i)%particles(n)%particle_mask ) THEN |
---|
| 1465 | IF ( grid_particles(k,j,i)%particles(n)%particle_nr == -1 ) THEN |
---|
| 1466 | grid_particles(k,j,i)%particles(n)%particle_nr = particle_nr |
---|
| 1467 | particle_nr = particle_nr + 1 |
---|
| 1468 | ENDIF |
---|
| 1469 | ENDIF |
---|
| 1470 | ENDDO |
---|
| 1471 | ENDDO |
---|
| 1472 | ENDDO |
---|
| 1473 | ENDDO |
---|
[4778] | 1474 | |
---|
| 1475 | |
---|
[4792] | 1476 | ENDIF |
---|
[4778] | 1477 | |
---|
| 1478 | |
---|
| 1479 | |
---|
[4792] | 1480 | RETURN |
---|
| 1481 | END SUBROUTINE dop_newly_generated_particles |
---|
[4778] | 1482 | |
---|
[4792] | 1483 | !--------------------------------------------------------------------------------------------------! |
---|
| 1484 | ! Description: |
---|
| 1485 | ! ------------ |
---|
| 1486 | ! |
---|
| 1487 | !--------------------------------------------------------------------------------------------------! |
---|
| 1488 | SUBROUTINE dop_count_remote_particles |
---|
[4778] | 1489 | |
---|
[4792] | 1490 | IMPLICIT NONE |
---|
| 1491 | |
---|
[4778] | 1492 | #if defined( __parallel ) |
---|
[4792] | 1493 | INTEGER(iwp) :: i !< |
---|
| 1494 | INTEGER(iwp) :: ierr !< MPI error code |
---|
| 1495 | INTEGER(iwp) :: j !< |
---|
| 1496 | INTEGER(iwp) :: k !< |
---|
| 1497 | INTEGER(iwp) :: n !< |
---|
| 1498 | INTEGER(iwp) :: iop !< |
---|
| 1499 | INTEGER(iwp) :: particle_nr |
---|
| 1500 | INTEGER(iwp) :: pe_nr |
---|
| 1501 | INTEGER(iwp) :: win_size |
---|
[4778] | 1502 | |
---|
[4792] | 1503 | INTEGER(iwp), DIMENSION(0:numprocs-1) :: part_ind |
---|
[4778] | 1504 | |
---|
| 1505 | ! |
---|
[4792] | 1506 | !-- Count remote particles |
---|
| 1507 | remote_nr_particles = 0 |
---|
| 1508 | DO i = nxl, nxr |
---|
| 1509 | DO j = nys, nyn |
---|
| 1510 | DO k = nzb+1, nzt |
---|
| 1511 | DO n = 1, prt_count(k,j,i) |
---|
| 1512 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1513 | IF ( particle_nr > 0 ) THEN |
---|
| 1514 | DO iop = 0, numprocs-1 !kk this loop has to be optimized |
---|
| 1515 | ! |
---|
| 1516 | !-- Although the counting is local PE based, the following if is io processor |
---|
| 1517 | !-- based because particles in MPI shared memory do not have to be transfered. |
---|
| 1518 | IF ( particle_nr < io_start_index .OR. particle_nr > io_end_index ) THEN |
---|
| 1519 | IF ( particle_nr >= mo_indices(1,iop) .AND. & |
---|
| 1520 | particle_nr <= mo_indices(2,iop) ) THEN |
---|
| 1521 | remote_nr_particles(2,iop) = remote_nr_particles(2,iop) + 1 |
---|
| 1522 | ENDIF |
---|
| 1523 | ENDIF |
---|
| 1524 | ENDDO |
---|
| 1525 | ENDIF |
---|
| 1526 | ENDDO |
---|
| 1527 | ENDDO |
---|
| 1528 | ENDDO |
---|
| 1529 | ENDDO |
---|
[4778] | 1530 | |
---|
[4792] | 1531 | remote_nr_particles(1,0) = 0 |
---|
| 1532 | DO i = 1, numprocs-1 |
---|
| 1533 | remote_nr_particles(1,i) = remote_nr_particles(1,i-1) + remote_nr_particles(2,i-1) |
---|
| 1534 | ENDDO |
---|
[4778] | 1535 | |
---|
[4792] | 1536 | win_size = SUM( remote_nr_particles(2,:) ) |
---|
| 1537 | CALL dop_alloc_rma_mem( transfer_buffer_i, win_size, win_rma_buf_i ) |
---|
| 1538 | CALL dop_alloc_rma_mem( transfer_buffer_r, win_size, win_rma_buf_r ) |
---|
[4778] | 1539 | |
---|
[4792] | 1540 | CALL MPI_ALLTOALL( remote_nr_particles, 2, MPI_INTEGER, rma_particles, 2, MPI_INTEGER, comm2d, & |
---|
| 1541 | ierr) |
---|
[4778] | 1542 | |
---|
| 1543 | ! |
---|
[4792] | 1544 | !-- The particles indices are the same for all output variables during one time step therefore, the |
---|
| 1545 | !-- indices are transfered only once here. |
---|
| 1546 | part_ind = remote_nr_particles(1,:) |
---|
| 1547 | transfer_buffer_i = -9999 |
---|
[4778] | 1548 | |
---|
[4792] | 1549 | DO i = nxl, nxr |
---|
| 1550 | DO j = nys, nyn |
---|
| 1551 | DO k = nzb+1, nzt |
---|
[4778] | 1552 | |
---|
[4792] | 1553 | DO n = 1, prt_count(k,j,i) |
---|
| 1554 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1555 | IF ( particle_nr < io_start_index .OR. particle_nr > io_end_index ) THEN |
---|
| 1556 | IF ( particle_nr > 0 ) THEN |
---|
| 1557 | pe_nr = find_pe_from_particle_nr( particle_nr ) |
---|
| 1558 | transfer_buffer_i(part_ind(pe_nr)) = particle_nr |
---|
| 1559 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1560 | ENDIF |
---|
| 1561 | ENDIF |
---|
| 1562 | ENDDO |
---|
| 1563 | ENDDO |
---|
| 1564 | ENDDO |
---|
| 1565 | ENDDO |
---|
[4778] | 1566 | |
---|
[4792] | 1567 | CALL MPI_BARRIER( MPI_COMM_WORLD, ierr ) |
---|
[4778] | 1568 | |
---|
[4792] | 1569 | CALL dop_get_remote_indices |
---|
[4778] | 1570 | |
---|
| 1571 | #endif |
---|
[4792] | 1572 | RETURN |
---|
| 1573 | END SUBROUTINE dop_count_remote_particles |
---|
[4778] | 1574 | |
---|
[4792] | 1575 | !--------------------------------------------------------------------------------------------------! |
---|
| 1576 | ! Description: |
---|
| 1577 | ! ------------ |
---|
| 1578 | !> Fill ouput buffer. |
---|
| 1579 | !> Local variables values are copied into output buffer. Local here means local to shared memory |
---|
| 1580 | !> group. |
---|
| 1581 | !> Remote variable values are copied into transfer buffer this is done by all threads. |
---|
| 1582 | !--------------------------------------------------------------------------------------------------! |
---|
| 1583 | SUBROUTINE dop_fill_out_buf (var) |
---|
[4778] | 1584 | |
---|
[4792] | 1585 | IMPLICIT NONE |
---|
[4778] | 1586 | |
---|
[4792] | 1587 | CHARACTER(LEN=32) :: local_name |
---|
[4778] | 1588 | |
---|
[4792] | 1589 | INTEGER(iwp) :: i !< |
---|
| 1590 | INTEGER(iwp) :: j !< |
---|
| 1591 | INTEGER(iwp) :: k !< |
---|
| 1592 | INTEGER(iwp) :: local_len !< |
---|
| 1593 | INTEGER(iwp) :: n !< |
---|
| 1594 | INTEGER(iwp) :: particle_nr !< |
---|
| 1595 | INTEGER(iwp) :: pe_nr !< |
---|
| 1596 | INTEGER(idp) :: pval !< |
---|
[4778] | 1597 | |
---|
[4792] | 1598 | INTEGER(iwp), DIMENSION(0:numprocs-1) :: part_ind |
---|
[4778] | 1599 | |
---|
[4792] | 1600 | TYPE(var_def), INTENT(IN) :: var |
---|
| 1601 | |
---|
| 1602 | |
---|
| 1603 | part_ind = remote_nr_particles(1,:) |
---|
| 1604 | transfer_buffer_i = -9998 |
---|
[4778] | 1605 | ! |
---|
[4792] | 1606 | !-- Filling output buffer is the same for variable name and variable name_const, therefore set |
---|
| 1607 | !-- local_name without _const |
---|
| 1608 | local_len = INDEX( TRIM( var%name ), '_const' ) |
---|
| 1609 | IF ( local_len == 0 ) THEN |
---|
| 1610 | local_name = var%name |
---|
| 1611 | ELSE |
---|
| 1612 | local_name = var%name(1:local_len-1) |
---|
| 1613 | ENDIF |
---|
[4778] | 1614 | ! |
---|
[4792] | 1615 | !-- In this subroutine the particles are seperated: |
---|
| 1616 | ! |
---|
| 1617 | !-- All particles which are located in the share memory area of the respective IO thread are copied |
---|
| 1618 | !-- into the output buffer. The other output particle are copied into the transfer buffer. |
---|
| 1619 | SELECT CASE ( TRIM( local_name ) ) |
---|
| 1620 | CASE ( 'origin_x' ) |
---|
| 1621 | DO i = nxl, nxr |
---|
| 1622 | DO j = nys, nyn |
---|
| 1623 | DO k = nzb+1, nzt |
---|
| 1624 | DO n =1, prt_count(k,j,i) |
---|
| 1625 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1626 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1627 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%origin_x |
---|
| 1628 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1629 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1630 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1631 | %particles(n)%origin_x |
---|
| 1632 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1633 | ENDIF |
---|
| 1634 | ENDDO |
---|
| 1635 | ENDDO |
---|
| 1636 | ENDDO |
---|
| 1637 | ENDDO |
---|
| 1638 | CASE ( 'origin_y' ) |
---|
| 1639 | DO i = nxl, nxr |
---|
| 1640 | DO j = nys, nyn |
---|
| 1641 | DO k = nzb+1, nzt |
---|
| 1642 | DO n = 1, prt_count(k,j,i) |
---|
| 1643 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1644 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1645 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%origin_y |
---|
| 1646 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1647 | pe_nr = find_pe_from_particle_nr (particle_nr) |
---|
| 1648 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1649 | %particles(n)%origin_y |
---|
| 1650 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1651 | ENDIF |
---|
| 1652 | ENDDO |
---|
| 1653 | ENDDO |
---|
| 1654 | ENDDO |
---|
| 1655 | ENDDO |
---|
| 1656 | CASE ( 'origin_z' ) |
---|
| 1657 | DO i = nxl, nxr |
---|
| 1658 | DO j = nys, nyn |
---|
| 1659 | DO k = nzb+1, nzt |
---|
| 1660 | DO n = 1, prt_count(k,j,i) |
---|
| 1661 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1662 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1663 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%origin_z |
---|
| 1664 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1665 | pe_nr = find_pe_from_particle_nr (particle_nr) |
---|
| 1666 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1667 | %particles(n)%origin_z |
---|
| 1668 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1669 | ENDIF |
---|
| 1670 | ENDDO |
---|
| 1671 | ENDDO |
---|
| 1672 | ENDDO |
---|
| 1673 | ENDDO |
---|
| 1674 | CASE ( 'id_low' ) |
---|
| 1675 | DO i = nxl, nxr |
---|
| 1676 | DO j = nys, nyn |
---|
| 1677 | DO k = nzb+1, nzt |
---|
| 1678 | DO n = 1, prt_count(k,j,i) |
---|
| 1679 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1680 | pval = IBITS( grid_particles(k,j,i)%particles(n)%id,0,32 ) |
---|
| 1681 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1682 | out_buf_i(particle_nr) = INT(pval,4) |
---|
| 1683 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1684 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1685 | transfer_buffer_i(part_ind(pe_nr)) = INT( pval, 4 ) |
---|
| 1686 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1687 | ENDIF |
---|
| 1688 | ENDDO |
---|
| 1689 | ENDDO |
---|
| 1690 | ENDDO |
---|
| 1691 | ENDDO |
---|
| 1692 | CASE ( 'id_high' ) |
---|
| 1693 | DO i = nxl, nxr |
---|
| 1694 | DO j = nys, nyn |
---|
| 1695 | DO k = nzb+1, nzt |
---|
| 1696 | DO n = 1, prt_count(k,j,i) |
---|
| 1697 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1698 | pval = IBITS( grid_particles(k,j,i)%particles(n)%id,32,32 ) |
---|
| 1699 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1700 | out_buf_i(particle_nr) = INT(pval,4) |
---|
| 1701 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1702 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1703 | transfer_buffer_i(part_ind(pe_nr)) = INT( pval, 4 ) |
---|
| 1704 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1705 | ENDIF |
---|
| 1706 | ENDDO |
---|
| 1707 | ENDDO |
---|
| 1708 | ENDDO |
---|
| 1709 | ENDDO |
---|
| 1710 | CASE ( 'particle_nr' ) |
---|
| 1711 | DO i = nxl, nxr |
---|
| 1712 | DO j = nys, nyn |
---|
| 1713 | DO k = nzb+1, nzt |
---|
| 1714 | DO n = 1, prt_count(k,j,i) |
---|
| 1715 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1716 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1717 | out_buf_i(particle_nr) = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1718 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1719 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1720 | transfer_buffer_i(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1721 | %particles(n)%particle_nr |
---|
| 1722 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1723 | ENDIF |
---|
| 1724 | ENDDO |
---|
| 1725 | ENDDO |
---|
| 1726 | ENDDO |
---|
| 1727 | ENDDO |
---|
| 1728 | CASE ( 'class' ) |
---|
| 1729 | DO i = nxl, nxr |
---|
| 1730 | DO j = nys, nyn |
---|
| 1731 | DO k = nzb+1, nzt |
---|
| 1732 | DO n = 1, prt_count(k,j,i) |
---|
| 1733 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1734 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1735 | out_buf_i(particle_nr) = grid_particles(k,j,i)%particles(n)%class |
---|
| 1736 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1737 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1738 | transfer_buffer_i(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1739 | %particles(n)%class |
---|
| 1740 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1741 | ENDIF |
---|
| 1742 | ENDDO |
---|
| 1743 | ENDDO |
---|
| 1744 | ENDDO |
---|
| 1745 | ENDDO |
---|
| 1746 | CASE ( 'group' ) |
---|
| 1747 | DO i = nxl, nxr |
---|
| 1748 | DO j = nys, nyn |
---|
| 1749 | DO k = nzb+1, nzt |
---|
| 1750 | DO n = 1, prt_count(k,j,i) |
---|
| 1751 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1752 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1753 | out_buf_i(particle_nr) = grid_particles(k,j,i)%particles(n)%group |
---|
| 1754 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1755 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1756 | transfer_buffer_i(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1757 | %particles(n)%group |
---|
| 1758 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1759 | ENDIF |
---|
| 1760 | ENDDO |
---|
| 1761 | ENDDO |
---|
| 1762 | ENDDO |
---|
| 1763 | ENDDO |
---|
| 1764 | CASE ( 'x' ) |
---|
| 1765 | DO i = nxl, nxr |
---|
| 1766 | DO j = nys, nyn |
---|
| 1767 | DO k = nzb+1, nzt |
---|
| 1768 | DO n = 1, prt_count(k,j,i) |
---|
| 1769 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1770 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1771 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%x |
---|
| 1772 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1773 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1774 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%x |
---|
| 1775 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1776 | ENDIF |
---|
| 1777 | ENDDO |
---|
| 1778 | ENDDO |
---|
| 1779 | ENDDO |
---|
| 1780 | ENDDO |
---|
| 1781 | CASE ( 'y' ) |
---|
| 1782 | DO i = nxl, nxr |
---|
| 1783 | DO j = nys, nyn |
---|
| 1784 | DO k = nzb+1, nzt |
---|
| 1785 | DO n = 1, prt_count(k,j,i) |
---|
| 1786 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1787 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1788 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%y |
---|
| 1789 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1790 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1791 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%y |
---|
| 1792 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1793 | ENDIF |
---|
| 1794 | ENDDO |
---|
| 1795 | ENDDO |
---|
| 1796 | ENDDO |
---|
| 1797 | ENDDO |
---|
| 1798 | CASE ( 'z' ) |
---|
| 1799 | DO i = nxl, nxr |
---|
| 1800 | DO j = nys, nyn |
---|
| 1801 | DO k = nzb+1, nzt |
---|
| 1802 | DO n = 1, prt_count(k,j,i) |
---|
| 1803 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1804 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1805 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%z |
---|
| 1806 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1807 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1808 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%z |
---|
| 1809 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1810 | ENDIF |
---|
| 1811 | ENDDO |
---|
| 1812 | ENDDO |
---|
| 1813 | ENDDO |
---|
| 1814 | ENDDO |
---|
| 1815 | CASE ( 'speed_x' ) |
---|
| 1816 | DO i = nxl, nxr |
---|
| 1817 | DO j = nys, nyn |
---|
| 1818 | DO k = nzb+1, nzt |
---|
| 1819 | DO n = 1, prt_count(k,j,i) |
---|
| 1820 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1821 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1822 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%speed_x |
---|
| 1823 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1824 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1825 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1826 | %particles(n)%speed_x |
---|
| 1827 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1828 | ENDIF |
---|
| 1829 | ENDDO |
---|
| 1830 | ENDDO |
---|
| 1831 | ENDDO |
---|
| 1832 | ENDDO |
---|
| 1833 | CASE ( 'speed_y' ) |
---|
| 1834 | DO i = nxl, nxr |
---|
| 1835 | DO j = nys, nyn |
---|
| 1836 | DO k = nzb+1, nzt |
---|
| 1837 | DO n = 1, prt_count(k,j,i) |
---|
| 1838 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1839 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1840 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%speed_y |
---|
| 1841 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1842 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1843 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1844 | %particles(n)%speed_y |
---|
| 1845 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1846 | ENDIF |
---|
| 1847 | ENDDO |
---|
| 1848 | ENDDO |
---|
| 1849 | ENDDO |
---|
| 1850 | ENDDO |
---|
| 1851 | CASE ( 'speed_z' ) |
---|
| 1852 | DO i = nxl, nxr |
---|
| 1853 | DO j = nys, nyn |
---|
| 1854 | DO k = nzb+1, nzt |
---|
| 1855 | DO n = 1, prt_count(k,j,i) |
---|
| 1856 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1857 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1858 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%speed_z |
---|
| 1859 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1860 | pe_nr = find_pe_from_particle_nr (particle_nr) |
---|
| 1861 | transfer_buffer_r (part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%speed_z |
---|
| 1862 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1863 | ENDIF |
---|
| 1864 | ENDDO |
---|
| 1865 | ENDDO |
---|
| 1866 | ENDDO |
---|
| 1867 | ENDDO |
---|
| 1868 | CASE ( 'radius' ) |
---|
| 1869 | DO i=nxl,nxr |
---|
| 1870 | DO j=nys,nyn |
---|
| 1871 | DO k=nzb+1,nzt |
---|
| 1872 | DO n=1,prt_count(k,j,i) |
---|
| 1873 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1874 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1875 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%radius |
---|
| 1876 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1877 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1878 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1879 | %particles(n)%radius |
---|
| 1880 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1881 | ENDIF |
---|
| 1882 | ENDDO |
---|
| 1883 | ENDDO |
---|
| 1884 | ENDDO |
---|
| 1885 | ENDDO |
---|
| 1886 | CASE ( 'age' ) |
---|
| 1887 | DO i = nxl, nxr |
---|
| 1888 | DO j = nys, nyn |
---|
| 1889 | DO k = nzb+1, nzt |
---|
| 1890 | DO n = 1, prt_count(k,j,i) |
---|
| 1891 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1892 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1893 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%age |
---|
| 1894 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1895 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1896 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%age |
---|
| 1897 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1898 | ENDIF |
---|
| 1899 | ENDDO |
---|
| 1900 | ENDDO |
---|
| 1901 | ENDDO |
---|
| 1902 | ENDDO |
---|
| 1903 | CASE ( 'age_m' ) |
---|
| 1904 | DO i = nxl, nxr |
---|
| 1905 | DO j = nys, nyn |
---|
| 1906 | DO k = nzb+1, nzt |
---|
| 1907 | DO n = 1, prt_count(k,j,i) |
---|
| 1908 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1909 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1910 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%age_m |
---|
| 1911 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1912 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1913 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1914 | %particles(n)%age_m |
---|
| 1915 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1916 | ENDIF |
---|
| 1917 | ENDDO |
---|
| 1918 | ENDDO |
---|
| 1919 | ENDDO |
---|
| 1920 | ENDDO |
---|
| 1921 | CASE ( 'dt_sum' ) |
---|
| 1922 | DO i = nxl, nxr |
---|
| 1923 | DO j = nys, nyn |
---|
| 1924 | DO k = nzb+1, nzt |
---|
| 1925 | DO n = 1, prt_count(k,j,i) |
---|
| 1926 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1927 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1928 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%dt_sum |
---|
| 1929 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1930 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1931 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1932 | %particles(n)%dt_sum |
---|
| 1933 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1934 | ENDIF |
---|
| 1935 | ENDDO |
---|
| 1936 | ENDDO |
---|
| 1937 | ENDDO |
---|
| 1938 | ENDDO |
---|
| 1939 | CASE( 'e_m' ) |
---|
| 1940 | DO i = nxl, nxr |
---|
| 1941 | DO j = nys, nyn |
---|
| 1942 | DO k = nzb+1, nzt |
---|
| 1943 | DO n = 1, prt_count(k,j,i) |
---|
| 1944 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1945 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1946 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%e_m |
---|
| 1947 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1948 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1949 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i)%particles(n)%e_m |
---|
| 1950 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1951 | ENDIF |
---|
| 1952 | ENDDO |
---|
| 1953 | ENDDO |
---|
| 1954 | ENDDO |
---|
| 1955 | ENDDO |
---|
| 1956 | CASE ( 'weight_factor' ) |
---|
| 1957 | DO i = nxl, nxr |
---|
| 1958 | DO j = nys, nyn |
---|
| 1959 | DO k = nzb+1, nzt |
---|
| 1960 | DO n = 1, prt_count(k,j,i) |
---|
| 1961 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1962 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1963 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%weight_factor |
---|
| 1964 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1965 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1966 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1967 | %particles(n)%weight_factor |
---|
| 1968 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1969 | ENDIF |
---|
| 1970 | ENDDO |
---|
| 1971 | ENDDO |
---|
| 1972 | ENDDO |
---|
| 1973 | ENDDO |
---|
| 1974 | CASE ( 'aux1' ) |
---|
| 1975 | DO i = nxl, nxr |
---|
| 1976 | DO j = nys, nyn |
---|
| 1977 | DO k = nzb+1, nzt |
---|
| 1978 | DO n = 1, prt_count(k,j,i) |
---|
| 1979 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1980 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1981 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%aux1 |
---|
| 1982 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 1983 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 1984 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 1985 | %particles(n)%aux1 |
---|
| 1986 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 1987 | ENDIF |
---|
| 1988 | ENDDO |
---|
| 1989 | ENDDO |
---|
| 1990 | ENDDO |
---|
| 1991 | ENDDO |
---|
| 1992 | CASE ( 'aux2' ) |
---|
| 1993 | DO i = nxl, nxr |
---|
| 1994 | DO j = nys, nyn |
---|
| 1995 | DO k = nzb+1, nzt |
---|
| 1996 | DO n = 1, prt_count(k,j,i) |
---|
| 1997 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 1998 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 1999 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%aux2 |
---|
| 2000 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 2001 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 2002 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 2003 | %particles(n)%aux2 |
---|
| 2004 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 2005 | ENDIF |
---|
| 2006 | ENDDO |
---|
| 2007 | ENDDO |
---|
| 2008 | ENDDO |
---|
| 2009 | ENDDO |
---|
| 2010 | CASE ( 'rvar1' ) |
---|
| 2011 | DO i = nxl, nxr |
---|
| 2012 | DO j = nys, nyn |
---|
| 2013 | DO k = nzb+1, nzt |
---|
| 2014 | DO n = 1, prt_count(k,j,i) |
---|
| 2015 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 2016 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 2017 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%rvar1 |
---|
| 2018 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 2019 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 2020 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 2021 | %particles(n)%rvar1 |
---|
| 2022 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 2023 | ENDIF |
---|
| 2024 | ENDDO |
---|
| 2025 | ENDDO |
---|
| 2026 | ENDDO |
---|
| 2027 | ENDDO |
---|
| 2028 | CASE ( 'rvar2' ) |
---|
| 2029 | DO i = nxl, nxr |
---|
| 2030 | DO j = nys, nyn |
---|
| 2031 | DO k = nzb+1, nzt |
---|
| 2032 | DO n = 1, prt_count(k,j,i) |
---|
| 2033 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 2034 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 2035 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%rvar2 |
---|
| 2036 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 2037 | pe_nr = find_pe_from_particle_nr (particle_nr) |
---|
| 2038 | transfer_buffer_r (part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 2039 | %particles(n)%rvar2 |
---|
| 2040 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 2041 | ENDIF |
---|
| 2042 | ENDDO |
---|
| 2043 | ENDDO |
---|
| 2044 | ENDDO |
---|
| 2045 | ENDDO |
---|
| 2046 | CASE ( 'rvar3' ) |
---|
| 2047 | DO i = nxl, nxr |
---|
| 2048 | DO j = nys, nyn |
---|
| 2049 | DO k = nzb+1, nzt |
---|
| 2050 | DO n = 1, prt_count(k,j,i) |
---|
| 2051 | particle_nr = grid_particles(k,j,i)%particles(n)%particle_nr |
---|
| 2052 | IF ( particle_nr >= io_start_index .AND. particle_nr <= io_end_index ) THEN |
---|
| 2053 | out_buf_r(particle_nr) = grid_particles(k,j,i)%particles(n)%rvar3 |
---|
| 2054 | ELSEIF ( particle_nr > 0 ) THEN |
---|
| 2055 | pe_nr = find_pe_from_particle_nr(particle_nr) |
---|
| 2056 | transfer_buffer_r(part_ind(pe_nr)) = grid_particles(k,j,i) & |
---|
| 2057 | %particles(n)%rvar3 |
---|
| 2058 | part_ind(pe_nr) = part_ind(pe_nr) + 1 |
---|
| 2059 | ENDIF |
---|
| 2060 | ENDDO |
---|
| 2061 | ENDDO |
---|
| 2062 | ENDDO |
---|
| 2063 | ENDDO |
---|
| 2064 | END SELECT |
---|
[4778] | 2065 | |
---|
[4792] | 2066 | RETURN |
---|
| 2067 | END SUBROUTINE dop_fill_out_buf |
---|
[4778] | 2068 | |
---|
| 2069 | #if defined( __parallel ) |
---|
| 2070 | |
---|
[4792] | 2071 | !--------------------------------------------------------------------------------------------------! |
---|
| 2072 | ! Description: |
---|
| 2073 | ! ------------ |
---|
| 2074 | !> Get indices (displacement) of remot particles |
---|
| 2075 | !--------------------------------------------------------------------------------------------------! |
---|
| 2076 | SUBROUTINE dop_get_remote_indices |
---|
[4778] | 2077 | |
---|
[4792] | 2078 | IMPLICIT NONE |
---|
[4778] | 2079 | |
---|
[4792] | 2080 | INTEGER(iwp) :: bufsize !< size of remote indices array |
---|
| 2081 | INTEGER(iwp) :: i !< |
---|
| 2082 | INTEGER(iwp) :: ierr !< MPI error code |
---|
| 2083 | INTEGER(iwp) :: ind_local !< index in remore indices array |
---|
| 2084 | INTEGER(KIND=MPI_ADDRESS_KIND) :: disp !< displacement in RMA window |
---|
[4778] | 2085 | |
---|
| 2086 | |
---|
[4792] | 2087 | bufsize = SUM( rma_particles(2,:) ) |
---|
| 2088 | ALLOCATE( remote_indices(0:bufsize) ) |
---|
| 2089 | remote_indices = -1 |
---|
[4778] | 2090 | |
---|
[4792] | 2091 | ind_local = 0 |
---|
| 2092 | CALL MPI_WIN_FENCE( 0, win_rma_buf_i, ierr ) |
---|
| 2093 | DO i = 0, numprocs-1 |
---|
| 2094 | IF ( rma_particles(2,i) > 0 ) THEN |
---|
| 2095 | disp = rma_particles(1,i) |
---|
| 2096 | IF ( rma_particles(2,i) > 0 ) THEN |
---|
| 2097 | CALL MPI_GET( remote_indices(ind_local), rma_particles(2,i), MPI_INTEGER, i, disp, & |
---|
| 2098 | rma_particles(2,i), MPI_INTEGER, win_rma_buf_i, ierr ) |
---|
| 2099 | ind_local = ind_local + rma_particles(2,i) |
---|
| 2100 | ENDIF |
---|
| 2101 | ENDIF |
---|
| 2102 | ENDDO |
---|
| 2103 | CALL MPI_WIN_FENCE( 0, win_rma_buf_i, ierr ) |
---|
| 2104 | |
---|
| 2105 | RETURN |
---|
| 2106 | END SUBROUTINE dop_get_remote_indices |
---|
[4778] | 2107 | #endif |
---|
| 2108 | |
---|
[4792] | 2109 | !--------------------------------------------------------------------------------------------------! |
---|
| 2110 | ! Description: |
---|
| 2111 | ! ------------ |
---|
| 2112 | !--------------------------------------------------------------------------------------------------! |
---|
| 2113 | SUBROUTINE dop_get_remote_particle (is_integer) |
---|
[4778] | 2114 | |
---|
[4792] | 2115 | IMPLICIT NONE |
---|
[4778] | 2116 | |
---|
[4792] | 2117 | LOGICAL, INTENT(IN) :: is_integer |
---|
[4778] | 2118 | |
---|
| 2119 | |
---|
| 2120 | #if defined( __parallel ) |
---|
[4792] | 2121 | INTEGER(iwp) :: bufsize !< size of remote data array |
---|
| 2122 | INTEGER(iwp) :: i !< |
---|
| 2123 | INTEGER(iwp) :: ierr !< MPI error code |
---|
| 2124 | INTEGER(iwp) :: ind_local !< index in remore indices array |
---|
| 2125 | INTEGER(iwp) :: j !< |
---|
| 2126 | INTEGER(iwp) :: particle_nr !< particle number |
---|
| 2127 | INTEGER(KIND=MPI_ADDRESS_KIND) :: disp !< displacement in RMA window |
---|
[4778] | 2128 | |
---|
[4792] | 2129 | INTEGER(iwp), ALLOCATABLE, DIMENSION(:) :: rma_buf_i !< buffer to receive remote data (INTEGER) |
---|
[4778] | 2130 | |
---|
[4792] | 2131 | REAL(sp), ALLOCATABLE, DIMENSION(:) :: rma_buf_r !< buffer to receive remote data (REAL) |
---|
[4778] | 2132 | |
---|
| 2133 | |
---|
[4792] | 2134 | bufsize = SUM( rma_particles(2,:) ) |
---|
| 2135 | ind_local = 0 |
---|
| 2136 | ALLOCATE( rma_buf_r(0:bufsize-1) ) |
---|
| 2137 | ALLOCATE( rma_buf_i(0:bufsize-1) ) |
---|
| 2138 | |
---|
| 2139 | IF ( is_integer ) THEN |
---|
| 2140 | CALL MPI_WIN_FENCE( 0, win_rma_buf_i, ierr ) |
---|
| 2141 | ELSE |
---|
| 2142 | CALL MPI_WIN_FENCE( 0, win_rma_buf_r, ierr ) |
---|
| 2143 | ENDIF |
---|
| 2144 | DO i = 0, numprocs-1 |
---|
| 2145 | IF ( rma_particles(2,i) > 0 ) THEN |
---|
| 2146 | IF ( is_integer ) THEN |
---|
| 2147 | disp = rma_particles(1,i) |
---|
| 2148 | CALL MPI_GET( rma_buf_i(ind_local), rma_particles(2,i), MPI_INTEGER, i, disp, & |
---|
| 2149 | rma_particles(2,i), MPI_INTEGER, win_rma_buf_i, ierr ) |
---|
| 2150 | ind_local = ind_local + rma_particles(2,i) |
---|
| 2151 | ELSE |
---|
| 2152 | disp = rma_particles(1,i) |
---|
| 2153 | CALL MPI_GET( rma_buf_r(ind_local), rma_particles(2,i), MPI_real, i, disp, & |
---|
| 2154 | rma_particles(2,i), MPI_real, win_rma_buf_r, ierr ) |
---|
| 2155 | ind_local = ind_local + rma_particles(2,i) |
---|
| 2156 | ENDIF |
---|
| 2157 | ENDIF |
---|
| 2158 | ENDDO |
---|
| 2159 | IF ( is_integer ) THEN |
---|
| 2160 | CALL MPI_WIN_FENCE( 0, win_rma_buf_i, ierr ) |
---|
| 2161 | ELSE |
---|
| 2162 | CALL MPI_WIN_FENCE( 0, win_rma_buf_r, ierr ) |
---|
| 2163 | ENDIF |
---|
| 2164 | |
---|
| 2165 | ind_local = 0 |
---|
| 2166 | |
---|
| 2167 | DO i = 0, numprocs-1 |
---|
| 2168 | IF ( rma_particles(2,i) > 0 ) THEN |
---|
| 2169 | IF ( is_integer ) THEN |
---|
[4778] | 2170 | ! |
---|
[4792] | 2171 | !-- Copy data from remote PEs into output array |
---|
| 2172 | DO j = 0, rma_particles(2,i)-1 |
---|
| 2173 | particle_nr = remote_indices(ind_local) |
---|
| 2174 | out_buf_i(particle_nr) = rma_buf_i(ind_local) |
---|
| 2175 | ind_local = ind_local + 1 |
---|
| 2176 | ENDDO |
---|
| 2177 | ELSE |
---|
[4778] | 2178 | ! |
---|
[4792] | 2179 | !-- Copy data from remote PEs into output array |
---|
| 2180 | DO j = 0, rma_particles(2,i)-1 |
---|
| 2181 | particle_nr = remote_indices(ind_local) |
---|
| 2182 | out_buf_r(particle_nr) = rma_buf_r(ind_local) |
---|
| 2183 | ind_local = ind_local + 1 |
---|
| 2184 | ENDDO |
---|
| 2185 | ENDIF |
---|
| 2186 | ENDIF |
---|
| 2187 | ENDDO |
---|
[4778] | 2188 | |
---|
[4792] | 2189 | IF ( ALLOCATED( rma_buf_r) ) DEALLOCATE( rma_buf_r ) |
---|
| 2190 | IF ( ALLOCATED( rma_buf_i) ) DEALLOCATE( rma_buf_i ) |
---|
[4778] | 2191 | #else |
---|
[4792] | 2192 | IF ( is_integer ) THEN |
---|
[4778] | 2193 | ENDIF |
---|
| 2194 | #endif |
---|
| 2195 | |
---|
[4792] | 2196 | RETURN |
---|
| 2197 | END SUBROUTINE dop_get_remote_particle |
---|
[4778] | 2198 | |
---|
| 2199 | #if defined( __parallel ) |
---|
[4792] | 2200 | !--------------------------------------------------------------------------------------------------! |
---|
| 2201 | ! Description: |
---|
| 2202 | ! ------------ |
---|
| 2203 | !> Allocate memory and cread window for one-sided communication (INTEGER 1-D array) |
---|
| 2204 | !--------------------------------------------------------------------------------------------------! |
---|
| 2205 | SUBROUTINE dop_alloc_rma_mem_i1( array, idim1, win ) |
---|
[4778] | 2206 | |
---|
[4792] | 2207 | IMPLICIT NONE |
---|
[4778] | 2208 | |
---|
[4792] | 2209 | INTEGER(iwp), INTENT(IN) :: idim1 !< |
---|
| 2210 | INTEGER :: ierr !< MPI error code |
---|
| 2211 | INTEGER(iwp), INTENT(OUT) :: win !< |
---|
| 2212 | INTEGER(KIND=MPI_ADDRESS_KIND) :: winsize !< size of RMA window |
---|
[4778] | 2213 | |
---|
[4792] | 2214 | INTEGER(isp), DIMENSION(:), POINTER, INTENT(INOUT) :: array !< |
---|
[4778] | 2215 | |
---|
| 2216 | |
---|
[4792] | 2217 | winsize = MAX( idim1, 2 ) |
---|
[4778] | 2218 | |
---|
[4792] | 2219 | ALLOCATE( array(0:winsize-1) ) |
---|
[4778] | 2220 | |
---|
[4792] | 2221 | winsize = winsize * isp |
---|
[4778] | 2222 | |
---|
[4792] | 2223 | CALL MPI_WIN_CREATE( array, winsize, isp, MPI_INFO_NULL, comm2d, win, ierr ) |
---|
[4778] | 2224 | |
---|
[4792] | 2225 | array = -1 |
---|
| 2226 | |
---|
| 2227 | CALL MPI_WIN_FENCE( 0, win, ierr ) |
---|
| 2228 | |
---|
| 2229 | END SUBROUTINE dop_alloc_rma_mem_i1 |
---|
[4778] | 2230 | #endif |
---|
| 2231 | |
---|
| 2232 | #if defined( __parallel ) |
---|
[4792] | 2233 | !--------------------------------------------------------------------------------------------------! |
---|
| 2234 | ! Description: |
---|
| 2235 | ! ------------ |
---|
| 2236 | !> Allocate memory and cread window for one-sided communication (REAL 1-D array) |
---|
| 2237 | !--------------------------------------------------------------------------------------------------! |
---|
| 2238 | SUBROUTINE dop_alloc_rma_mem_r1( array, idim1, win ) |
---|
[4778] | 2239 | |
---|
[4792] | 2240 | IMPLICIT NONE |
---|
[4778] | 2241 | |
---|
[4792] | 2242 | INTEGER(iwp), INTENT(IN) :: idim1 !< |
---|
| 2243 | INTEGER :: ierr !< MPI error code |
---|
| 2244 | INTEGER(iwp), INTENT(OUT) :: win !< |
---|
| 2245 | INTEGER(KIND=MPI_ADDRESS_KIND) :: winsize !< size of RMA window |
---|
[4778] | 2246 | |
---|
[4792] | 2247 | REAL(sp), DIMENSION(:), POINTER, INTENT(INOUT) :: array !< |
---|
[4778] | 2248 | |
---|
| 2249 | |
---|
[4792] | 2250 | winsize = MAX( idim1, 2 ) |
---|
[4778] | 2251 | |
---|
[4792] | 2252 | ALLOCATE( array(0:winsize-1) ) |
---|
[4778] | 2253 | |
---|
[4792] | 2254 | winsize = winsize * sp |
---|
[4778] | 2255 | |
---|
[4792] | 2256 | CALL MPI_WIN_CREATE( array, winsize, sp, MPI_INFO_NULL, comm2d, win, ierr ) |
---|
[4778] | 2257 | |
---|
[4792] | 2258 | array = -1.0_wp |
---|
[4778] | 2259 | |
---|
[4792] | 2260 | CALL MPI_WIN_FENCE( 0, win, ierr ) |
---|
[4778] | 2261 | |
---|
[4792] | 2262 | END SUBROUTINE dop_alloc_rma_mem_r1 |
---|
[4778] | 2263 | #endif |
---|
| 2264 | |
---|
[4792] | 2265 | !--------------------------------------------------------------------------------------------------! |
---|
| 2266 | ! Description: |
---|
| 2267 | ! ------------ |
---|
| 2268 | !--------------------------------------------------------------------------------------------------! |
---|
| 2269 | SUBROUTINE deallocate_and_free |
---|
[4778] | 2270 | |
---|
[4792] | 2271 | IMPLICIT NONE |
---|
[4778] | 2272 | |
---|
| 2273 | #if defined( __parallel ) |
---|
[4792] | 2274 | INTEGER :: ierr !< MPI error code |
---|
[4778] | 2275 | #endif |
---|
| 2276 | |
---|
| 2277 | #if defined( __parallel ) |
---|
[4792] | 2278 | CALL MPI_WIN_FREE( win_rma_buf_i, ierr ) |
---|
| 2279 | CALL MPI_WIN_FREE( win_rma_buf_r, ierr ) |
---|
[4778] | 2280 | #endif |
---|
[4792] | 2281 | IF ( ALLOCATED( remote_indices ) ) DEALLOCATE( remote_indices ) |
---|
[4778] | 2282 | |
---|
[4792] | 2283 | DEALLOCATE( transfer_buffer_i ) |
---|
| 2284 | DEALLOCATE( transfer_buffer_r ) |
---|
[4778] | 2285 | |
---|
[4792] | 2286 | RETURN |
---|
[4778] | 2287 | |
---|
[4792] | 2288 | END SUBROUTINE deallocate_and_free |
---|
[4778] | 2289 | |
---|
| 2290 | |
---|
[4792] | 2291 | FUNCTION find_pe_from_particle_nr( particle_nr ) RESULT( pe_nr ) |
---|
| 2292 | IMPLICIT NONE |
---|
[4778] | 2293 | |
---|
[4792] | 2294 | INTEGER(iwp) :: base !< |
---|
| 2295 | INTEGER(iwp), INTENT(IN) :: particle_nr |
---|
| 2296 | INTEGER(iwp) :: pe_nr !< |
---|
| 2297 | INTEGER(iwp) :: pnr !< |
---|
[4778] | 2298 | |
---|
[4792] | 2299 | IF ( irregular_distribubtion ) THEN |
---|
| 2300 | IF ( particle_nr <= nr_particles_rest * nr_particles_pe ) THEN |
---|
| 2301 | pe_nr = ( particle_nr - 1 ) / nr_particles_pe |
---|
| 2302 | ELSE |
---|
| 2303 | base = nr_particles_rest * nr_particles_pe |
---|
| 2304 | pnr = particle_nr - base |
---|
| 2305 | pe_nr = ( pnr - 1 ) / ( nr_particles_pe - 1 ) |
---|
| 2306 | pe_nr = pe_nr + nr_particles_rest |
---|
| 2307 | ENDIF |
---|
| 2308 | ELSE |
---|
| 2309 | pe_nr = ( particle_nr - 1 ) / nr_particles_pe |
---|
| 2310 | ENDIF |
---|
[4778] | 2311 | |
---|
| 2312 | |
---|
[4792] | 2313 | !-- kk This error test is to detect programming errors. For performance reasons it can be removed |
---|
| 2314 | !-- kk in the final, stable version. |
---|
[4778] | 2315 | |
---|
[4792] | 2316 | END FUNCTION find_pe_from_particle_nr |
---|
| 2317 | |
---|
| 2318 | END MODULE data_output_particle_mod |
---|