1 | SUBROUTINE data_output_mask( av ) |
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2 | |
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3 | !------------------------------------------------------------------------------! |
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4 | ! Current revisions: |
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5 | ! ----------------- |
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6 | ! |
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7 | ! Former revisions: |
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8 | ! ----------------- |
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9 | ! $Id: data_output_mask.f90 668 2010-12-23 13:22:58Z helmke $ |
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10 | ! |
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11 | ! 667 2010-12-23 12:06:00Z suehring/gryschka |
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12 | ! Calls of exchange_horiz are modified. |
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13 | ! |
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14 | ! 564 2010-09-30 13:18:59Z helmke |
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15 | ! start number of mask output files changed to 201, netcdf message identifiers |
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16 | ! of masked output changed, palm message identifiers of masked output changed |
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17 | ! |
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18 | ! 493 2010-03-01 08:30:24Z raasch |
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19 | ! netcdf_format_mask* and format_parallel_io replaced by netcdf_data_format |
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20 | ! |
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21 | ! 475 2010-02-04 02:26:16Z raasch |
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22 | ! Bugfix in serial branch: arguments from array local_pf removed in N90_PUT_VAR |
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23 | ! |
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24 | ! 410 2009-12-04 17:05:40Z letzel |
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25 | ! Initial version |
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26 | ! |
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27 | ! Description: |
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28 | ! ------------ |
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29 | ! Masked data output in NetCDF format for current mask (current value of mid). |
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30 | !------------------------------------------------------------------------------! |
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31 | |
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32 | #if defined( __netcdf ) |
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33 | USE arrays_3d |
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34 | USE averaging |
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35 | USE cloud_parameters |
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36 | USE control_parameters |
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37 | USE cpulog |
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38 | USE grid_variables |
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39 | USE indices |
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40 | USE interfaces |
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41 | USE netcdf |
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42 | USE netcdf_control |
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43 | USE particle_attributes |
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44 | USE pegrid |
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45 | |
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46 | IMPLICIT NONE |
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47 | |
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48 | INTEGER :: av, ngp, file_id, i, if, is, j, k, l, n, psi, s, sender, & |
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49 | ind(6) |
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50 | LOGICAL :: found, resorted |
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51 | REAL :: mean_r, s_r3, s_r4 |
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52 | REAL, DIMENSION(:,:,:), ALLOCATABLE :: local_pf |
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53 | #if defined( __parallel ) |
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54 | REAL, DIMENSION(:,:,:), ALLOCATABLE :: total_pf |
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55 | #endif |
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56 | REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted |
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57 | |
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58 | ! |
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59 | !-- Return, if nothing to output |
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60 | IF ( domask_no(mid,av) == 0 ) RETURN |
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61 | |
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62 | CALL cpu_log (log_point(49),'data_output_mask','start') |
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63 | |
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64 | ! |
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65 | !-- Open output file. |
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66 | IF ( netcdf_output .AND. ( myid == 0 .OR. netcdf_data_format > 2 ) ) & |
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67 | THEN |
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68 | CALL check_open( 200+mid+av*max_masks ) |
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69 | ENDIF |
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70 | |
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71 | ! |
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72 | !-- Allocate total and local output arrays. |
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73 | #if defined( __parallel ) |
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74 | IF ( myid == 0 ) THEN |
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75 | ALLOCATE( total_pf(mask_size(mid,1),mask_size(mid,2),mask_size(mid,3)) ) |
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76 | ENDIF |
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77 | #endif |
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78 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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79 | mask_size_l(mid,3)) ) |
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80 | |
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81 | ! |
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82 | !-- Update the NetCDF time axis. |
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83 | domask_time_count(mid,av) = domask_time_count(mid,av) + 1 |
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84 | IF ( netcdf_output .AND. ( myid == 0 .OR. netcdf_data_format > 2 ) ) & |
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85 | THEN |
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86 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), & |
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87 | (/ simulated_time /), & |
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88 | start = (/ domask_time_count(mid,av) /), & |
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89 | count = (/ 1 /) ) |
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90 | CALL handle_netcdf_error( 'data_output_mask', 460 ) |
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91 | ENDIF |
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92 | |
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93 | ! |
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94 | !-- Loop over all variables to be written. |
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95 | if = 1 |
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96 | |
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97 | DO WHILE ( domask(mid,av,if)(1:1) /= ' ' ) |
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98 | ! |
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99 | !-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange |
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100 | IF ( netcdf_data_format < 3 .AND. myid == 0 .AND. if > 1 ) THEN |
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101 | DEALLOCATE( local_pf ) |
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102 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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103 | mask_size_l(mid,3)) ) |
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104 | ENDIF |
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105 | ! |
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106 | !-- Store the variable chosen. |
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107 | resorted = .FALSE. |
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108 | SELECT CASE ( TRIM( domask(mid,av,if) ) ) |
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109 | |
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110 | CASE ( 'e' ) |
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111 | IF ( av == 0 ) THEN |
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112 | to_be_resorted => e |
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113 | ELSE |
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114 | to_be_resorted => e_av |
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115 | ENDIF |
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116 | |
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117 | CASE ( 'p' ) |
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118 | IF ( av == 0 ) THEN |
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119 | to_be_resorted => p |
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120 | ELSE |
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121 | to_be_resorted => p_av |
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122 | ENDIF |
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123 | |
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124 | CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange) |
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125 | IF ( av == 0 ) THEN |
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126 | tend = prt_count |
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127 | CALL exchange_horiz( tend, nbgp ) |
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128 | DO i = 1, mask_size_l(mid,1) |
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129 | DO j = 1, mask_size_l(mid,2) |
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130 | DO k = 1, mask_size_l(mid,3) |
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131 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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132 | mask_j(mid,j),mask_i(mid,i)) |
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133 | ENDDO |
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134 | ENDDO |
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135 | ENDDO |
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136 | resorted = .TRUE. |
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137 | ELSE |
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138 | CALL exchange_horiz( pc_av, nbgp ) |
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139 | to_be_resorted => pc_av |
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140 | ENDIF |
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141 | |
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142 | CASE ( 'pr' ) ! mean particle radius |
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143 | IF ( av == 0 ) THEN |
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144 | DO i = nxl, nxr |
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145 | DO j = nys, nyn |
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146 | DO k = nzb, nzt+1 |
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147 | psi = prt_start_index(k,j,i) |
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148 | s_r3 = 0.0 |
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149 | s_r4 = 0.0 |
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150 | DO n = psi, psi+prt_count(k,j,i)-1 |
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151 | s_r3 = s_r3 + particles(n)%radius**3 |
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152 | s_r4 = s_r4 + particles(n)%radius**4 |
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153 | ENDDO |
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154 | IF ( s_r3 /= 0.0 ) THEN |
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155 | mean_r = s_r4 / s_r3 |
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156 | ELSE |
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157 | mean_r = 0.0 |
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158 | ENDIF |
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159 | tend(k,j,i) = mean_r |
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160 | ENDDO |
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161 | ENDDO |
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162 | ENDDO |
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163 | CALL exchange_horiz( tend, nbgp ) |
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164 | DO i = 1, mask_size_l(mid,1) |
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165 | DO j = 1, mask_size_l(mid,2) |
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166 | DO k = 1, mask_size_l(mid,3) |
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167 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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168 | mask_j(mid,j),mask_i(mid,i)) |
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169 | ENDDO |
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170 | ENDDO |
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171 | ENDDO |
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172 | resorted = .TRUE. |
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173 | ELSE |
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174 | CALL exchange_horiz( pr_av, nbgp ) |
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175 | to_be_resorted => pr_av |
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176 | ENDIF |
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177 | |
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178 | CASE ( 'pt' ) |
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179 | IF ( av == 0 ) THEN |
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180 | IF ( .NOT. cloud_physics ) THEN |
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181 | to_be_resorted => pt |
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182 | ELSE |
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183 | DO i = 1, mask_size_l(mid,1) |
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184 | DO j = 1, mask_size_l(mid,2) |
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185 | DO k = 1, mask_size_l(mid,3) |
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186 | local_pf(i,j,k) = & |
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187 | pt(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) & |
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188 | + l_d_cp * pt_d_t(mask_k(mid,k)) * & |
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189 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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190 | ENDDO |
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191 | ENDDO |
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192 | ENDDO |
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193 | resorted = .TRUE. |
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194 | ENDIF |
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195 | ELSE |
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196 | to_be_resorted => pt_av |
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197 | ENDIF |
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198 | |
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199 | CASE ( 'q' ) |
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200 | IF ( av == 0 ) THEN |
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201 | to_be_resorted => q |
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202 | ELSE |
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203 | to_be_resorted => q_av |
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204 | ENDIF |
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205 | |
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206 | CASE ( 'ql' ) |
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207 | IF ( av == 0 ) THEN |
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208 | to_be_resorted => ql |
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209 | ELSE |
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210 | to_be_resorted => ql_av |
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211 | ENDIF |
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212 | |
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213 | CASE ( 'ql_c' ) |
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214 | IF ( av == 0 ) THEN |
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215 | to_be_resorted => ql_c |
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216 | ELSE |
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217 | to_be_resorted => ql_c_av |
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218 | ENDIF |
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219 | |
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220 | CASE ( 'ql_v' ) |
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221 | IF ( av == 0 ) THEN |
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222 | to_be_resorted => ql_v |
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223 | ELSE |
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224 | to_be_resorted => ql_v_av |
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225 | ENDIF |
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226 | |
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227 | CASE ( 'ql_vp' ) |
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228 | IF ( av == 0 ) THEN |
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229 | to_be_resorted => ql_vp |
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230 | ELSE |
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231 | to_be_resorted => ql_vp_av |
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232 | ENDIF |
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233 | |
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234 | CASE ( 'qv' ) |
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235 | IF ( av == 0 ) THEN |
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236 | DO i = 1, mask_size_l(mid,1) |
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237 | DO j = 1, mask_size_l(mid,2) |
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238 | DO k = 1, mask_size_l(mid,3) |
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239 | local_pf(i,j,k) = & |
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240 | q(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) - & |
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241 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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242 | ENDDO |
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243 | ENDDO |
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244 | ENDDO |
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245 | resorted = .TRUE. |
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246 | ELSE |
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247 | to_be_resorted => qv_av |
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248 | ENDIF |
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249 | |
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250 | CASE ( 'rho' ) |
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251 | IF ( av == 0 ) THEN |
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252 | to_be_resorted => rho |
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253 | ELSE |
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254 | to_be_resorted => rho_av |
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255 | ENDIF |
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256 | |
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257 | CASE ( 's' ) |
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258 | IF ( av == 0 ) THEN |
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259 | to_be_resorted => q |
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260 | ELSE |
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261 | to_be_resorted => s_av |
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262 | ENDIF |
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263 | |
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264 | CASE ( 'sa' ) |
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265 | IF ( av == 0 ) THEN |
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266 | to_be_resorted => sa |
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267 | ELSE |
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268 | to_be_resorted => sa_av |
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269 | ENDIF |
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270 | |
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271 | CASE ( 'u' ) |
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272 | IF ( av == 0 ) THEN |
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273 | to_be_resorted => u |
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274 | ELSE |
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275 | to_be_resorted => u_av |
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276 | ENDIF |
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277 | |
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278 | CASE ( 'v' ) |
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279 | IF ( av == 0 ) THEN |
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280 | to_be_resorted => v |
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281 | ELSE |
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282 | to_be_resorted => v_av |
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283 | ENDIF |
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284 | |
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285 | CASE ( 'vpt' ) |
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286 | IF ( av == 0 ) THEN |
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287 | to_be_resorted => vpt |
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288 | ELSE |
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289 | to_be_resorted => vpt_av |
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290 | ENDIF |
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291 | |
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292 | CASE ( 'w' ) |
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293 | IF ( av == 0 ) THEN |
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294 | to_be_resorted => w |
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295 | ELSE |
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296 | to_be_resorted => w_av |
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297 | ENDIF |
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298 | |
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299 | CASE DEFAULT |
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300 | ! |
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301 | !-- User defined quantity |
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302 | CALL user_data_output_mask(av, domask(mid,av,if), found, local_pf ) |
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303 | resorted = .TRUE. |
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304 | |
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305 | IF ( .NOT. found ) THEN |
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306 | WRITE ( message_string, * ) 'no output available for: ', & |
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307 | TRIM( domask(mid,av,if) ) |
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308 | CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 ) |
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309 | ENDIF |
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310 | |
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311 | END SELECT |
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312 | |
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313 | ! |
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314 | !-- Resort the array to be output, if not done above |
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315 | IF ( .NOT. resorted ) THEN |
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316 | DO i = 1, mask_size_l(mid,1) |
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317 | DO j = 1, mask_size_l(mid,2) |
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318 | DO k = 1, mask_size_l(mid,3) |
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319 | local_pf(i,j,k) = to_be_resorted(mask_k(mid,k), & |
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320 | mask_j(mid,j),mask_i(mid,i)) |
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321 | ENDDO |
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322 | ENDDO |
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323 | ENDDO |
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324 | ENDIF |
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325 | |
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326 | ! |
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327 | !-- I/O block. I/O methods are implemented |
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328 | !-- (1) for parallel execution |
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329 | !-- a. with NetCDF 4 parallel I/O-enabled library |
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330 | !-- b. with NetCDF 3 library |
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331 | !-- (2) for serial execution. |
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332 | !-- The choice of method depends on the correct setting of preprocessor |
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333 | !-- directives __parallel and __netcdf4 as well as on the parameter |
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334 | !-- netcdf_data_format. |
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335 | #if defined( __parallel ) |
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336 | #if defined( __netcdf4 ) |
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337 | IF ( netcdf_data_format > 2 ) THEN |
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338 | ! |
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339 | !-- (1) a. Parallel I/O using NetCDF 4 (not yet tested) |
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340 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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341 | id_var_domask(mid,av,if), & |
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342 | local_pf, & |
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343 | start = (/ mask_start_l(mid,1), mask_start_l(mid,2), & |
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344 | mask_start_l(mid,3), domask_time_count(mid,av) /), & |
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345 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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346 | mask_size_l(mid,3), 1 /) ) |
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347 | CALL handle_netcdf_error( 'data_output_mask', 461 ) |
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348 | ELSE |
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349 | #endif |
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350 | ! |
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351 | !-- (1) b. Conventional I/O only through PE0 |
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352 | !-- PE0 receives partial arrays from all processors of the respective mask |
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353 | !-- and outputs them. Here a barrier has to be set, because otherwise |
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354 | !-- "-MPI- FATAL: Remote protocol queue full" may occur. |
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355 | CALL MPI_BARRIER( comm2d, ierr ) |
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356 | |
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357 | ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3) |
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358 | IF ( myid == 0 ) THEN |
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359 | ! |
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360 | !-- Local array can be relocated directly. |
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361 | total_pf( & |
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362 | mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, & |
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363 | mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, & |
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364 | mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) & |
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365 | = local_pf |
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366 | ! |
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367 | !-- Receive data from all other PEs. |
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368 | DO n = 1, numprocs-1 |
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369 | ! |
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370 | !-- Receive index limits first, then array. |
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371 | !-- Index limits are received in arbitrary order from the PEs. |
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372 | CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, & |
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373 | comm2d, status, ierr ) |
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374 | ! |
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375 | !-- Not all PEs have data for the mask |
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376 | IF ( ind(1) /= -9999 ) THEN |
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377 | ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * & |
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378 | ( ind(6)-ind(5)+1 ) |
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379 | sender = status(MPI_SOURCE) |
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380 | DEALLOCATE( local_pf ) |
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381 | ALLOCATE(local_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6))) |
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382 | CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, & |
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383 | MPI_REAL, sender, 1, comm2d, status, ierr ) |
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384 | total_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)) & |
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385 | = local_pf |
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386 | ENDIF |
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387 | ENDDO |
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388 | |
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389 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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390 | id_var_domask(mid,av,if), total_pf, & |
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391 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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392 | count = (/ mask_size(mid,1), mask_size(mid,2), & |
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393 | mask_size(mid,3), 1 /) ) |
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394 | CALL handle_netcdf_error( 'data_output_mask', 462 ) |
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395 | |
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396 | ELSE |
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397 | ! |
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398 | !-- If at least part of the mask resides on the PE, send the index |
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399 | !-- limits for the target array, otherwise send -9999 to PE0. |
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400 | IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. & |
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401 | mask_size_l(mid,3) > 0 ) & |
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402 | THEN |
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403 | ind(1) = mask_start_l(mid,1) |
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404 | ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1 |
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405 | ind(3) = mask_start_l(mid,2) |
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406 | ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1 |
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407 | ind(5) = mask_start_l(mid,3) |
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408 | ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1 |
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409 | ELSE |
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410 | ind(1) = -9999; ind(2) = -9999 |
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411 | ind(3) = -9999; ind(4) = -9999 |
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412 | ind(5) = -9999; ind(6) = -9999 |
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413 | ENDIF |
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414 | CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr ) |
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415 | ! |
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416 | !-- If applicable, send data to PE0. |
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417 | IF ( ind(1) /= -9999 ) THEN |
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418 | CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, & |
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419 | ierr ) |
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420 | ENDIF |
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421 | ENDIF |
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422 | ! |
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423 | !-- A barrier has to be set, because otherwise some PEs may proceed too |
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424 | !-- fast so that PE0 may receive wrong data on tag 0. |
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425 | CALL MPI_BARRIER( comm2d, ierr ) |
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426 | #if defined( __netcdf4 ) |
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427 | ENDIF |
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428 | #endif |
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429 | #else |
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430 | ! |
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431 | !-- (2) For serial execution of PALM, the single processor (PE0) holds all |
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432 | !-- data and writes them directly to file. |
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433 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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434 | id_var_domask(mid,av,if), & |
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435 | local_pf, & |
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436 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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437 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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438 | mask_size_l(mid,3), 1 /) ) |
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439 | CALL handle_netcdf_error( 'data_output_mask', 463 ) |
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440 | #endif |
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441 | |
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442 | if = if + 1 |
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443 | |
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444 | ENDDO |
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445 | |
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446 | ! |
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447 | !-- Deallocate temporary arrays. |
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448 | DEALLOCATE( local_pf ) |
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449 | #if defined( __parallel ) |
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450 | IF ( myid == 0 ) THEN |
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451 | DEALLOCATE( total_pf ) |
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452 | ENDIF |
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453 | #endif |
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454 | |
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455 | |
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456 | CALL cpu_log (log_point(49),'data_output_mask','stop','nobarrier') |
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457 | #endif |
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458 | |
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459 | END SUBROUTINE data_output_mask |
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