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source: palm/trunk/SOURCE/data_output_mask.f90 @ 4729

Last change on this file since 4729 was 4559, checked in by raasch, 4 years ago
files re-formatted to follow the PALM coding standard
Property svn:keywords set to `Id`
File size: 33.2 KB

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1	!> @file data_output_mask.f90
2	!--------------------------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the terms of the GNU General
6	! Public License as published by the Free Software Foundation, either version 3 of the License, or
7	! (at your option) any later version.
8	!
9	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the
10	! implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
11	! Public License for more details.
12	!
13	! You should have received a copy of the GNU General Public License along with PALM. If not, see
14	! <http://www.gnu.org/licenses/>.
15
16	!
17	! Copyright 1997-2020 Leibniz Universitaet Hannover
18	!--------------------------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_mask.f90 4559 2020-06-11 08:51:48Z raasch $
27	! file re-formatted to follow the PALM coding standard
28	!
29	! 4457 2020-03-11 14:20:43Z raasch
30	! use statement for exchange horiz added
31	!
32	! 4444 2020-03-05 15:59:50Z raasch
33	! bugfix: cpp-directives for serial mode added
34	!
35	! 4377 2020-01-15 11:10:51Z gronemeier
36	! bugfix: set fill value for output according to wall_flags_total_0 for non-terrain following output
37	!
38	! 4360 2020-01-07 11:25:50Z suehring
39	! Introduction of wall_flags_total_0, which currently sets bits based on static topography
40	! information used in wall_flags_static_0
41	!
42	! 4331 2019-12-10 18:25:02Z suehring
43	! Formatting adjustment
44	!
45	! 4329 2019-12-10 15:46:36Z motisi
46	! Renamed wall_flags_0 to wall_flags_static_0
47	!
48	! 4246 2019-09-30 09:27:52Z pavelkrc
49	! Corrected "Former revisions" section
50	!
51	! 4168 2019-08-16 13:50:17Z suehring
52	! Remove variable grid
53	!
54	! 4167 2019-08-16 11:01:48Z suehring
55	! Changed behaviour of masked output over surface to follow terrain and ignore buildings
56	! (J.Resler, T.Gronemeier)
57	!
58	! 4069 2019-07-01 14:05:51Z Giersch
59	! Masked output running index mid has been introduced as a local variable to avoid runtime error
60	! (Loop variable has been modified) in time_integration
61	!
62	! 4039 2019-06-18 10:32:41Z suehring
63	! Modularize diagnostic output
64	!
65	! 3994 2019-05-22 18:08:09Z suehring
66	! output of turbulence intensity added
67	!
68	! 3665 2019-01-10 08:28:24Z raasch
69	! unused variables removed
70	!
71	! 3655 2019-01-07 16:51:22Z knoop
72	! Fix output time levels (use time_since_reference_point)
73	!
74	! 410 2009-12-04 17:05:40Z letzel
75	! Initial version
76	!
77	! Description:
78	! ------------
79	!> Masked data output in netCDF format for current mask (current value of mid).
80	!--------------------------------------------------------------------------------------------------!
81	SUBROUTINE data_output_mask( av, mid )
82
83
84
85	#if defined( __netcdf )
86	USE arrays_3d, &
87	ONLY: d_exner, e, nc, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, tend, u, v, &
88	vpt, w
89
90	USE averaging, &
91	ONLY: e_av, lpt_av, nc_av, nr_av, p_av, pc_av, pr_av, pt_av, q_av, qc_av, ql_av, ql_c_av, &
92	ql_v_av, ql_vp_av, qv_av, qr_av, rho_ocean_av, s_av, sa_av, u_av, v_av, vpt_av, w_av
93
94	USE basic_constants_and_equations_mod, &
95	ONLY: lv_d_cp
96
97	USE chemistry_model_mod, &
98	ONLY: chem_data_output_mask
99
100	USE control_parameters, &
101	ONLY: air_chemistry, domask, domask_no, domask_time_count, mask_i, mask_j, mask_k, &
102	mask_size_l, mask_surface, max_masks, message_string, nz_do3d, salsa, &
103	time_since_reference_point
104
105	#if defined( __parallel )
106	USE control_parameters, &
107	ONLY: mask_size, mask_start_l
108	#endif
109
110	USE cpulog, &
111	ONLY: cpu_log, log_point
112
113	USE diagnostic_output_quantities_mod, &
114	ONLY: doq_output_mask
115
116	USE exchange_horiz_mod, &
117	ONLY: exchange_horiz
118
119	USE indices, &
120	ONLY: nbgp, nxl, nxr, nyn, nys, nzb, nzt, wall_flags_total_0
121
122	USE kinds
123
124	USE bulk_cloud_model_mod, &
125	ONLY: bulk_cloud_model
126
127	USE NETCDF
128
129	USE netcdf_interface, &
130	ONLY: fill_value, id_set_mask, id_var_domask, id_var_time_mask, nc_stat, &
131	netcdf_data_format, netcdf_handle_error
132
133	USE particle_attributes, &
134	ONLY: grid_particles, number_of_particles, particles, particle_advection_start, prt_count
135
136	USE pegrid
137
138	USE radiation_model_mod, &
139	ONLY: radiation, radiation_data_output_mask
140
141	USE salsa_mod, &
142	ONLY: salsa_data_output_mask
143
144
145	IMPLICIT NONE
146
147	INTEGER(iwp) :: av !< flag for (non-)average output
148	INTEGER(iwp) :: flag_nr !< number of masking flag
149	INTEGER(iwp) :: i !< loop index
150	INTEGER(iwp) :: im !< loop index for masked variables
151	INTEGER(iwp) :: ivar !< variable index
152	INTEGER(iwp) :: j !< loop index
153	INTEGER(iwp) :: jm !< loop index for masked variables
154	INTEGER(iwp) :: k !< loop index
155	INTEGER(iwp) :: kk !< vertical index
156	INTEGER(iwp) :: ktt !< k index of highest terrain surface
157	INTEGER(iwp) :: mid !< masked output running index
158	INTEGER(iwp) :: n !< loop index
159	INTEGER(iwp) :: netcdf_data_format_save !< value of netcdf_data_format
160	#if defined( __parallel )
161	INTEGER(iwp) :: ind(6) !< index limits (lower/upper bounds) of array 'local_2d'
162	INTEGER(iwp) :: ngp !< number of grid points of an output slice
163	INTEGER(iwp) :: sender !< PE id of sending PE
164	#endif
165
166	LOGICAL :: found !< true if output variable was found
167	LOGICAL :: resorted !< true if variable is resorted
168
169	REAL(wp) :: mean_r !< mean particle radius
170	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
171	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
172
173	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
174	#if defined( __parallel )
175	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: total_pf !< collected output array
176	#endif
177	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< points to array which shall be output
178
179
180	!
181	!-- Return, if nothing to output
182	IF ( domask_no(mid,av) == 0 ) RETURN
183
184	CALL cpu_log (log_point(49),'data_output_mask','start')
185
186	!
187	!-- Parallel netcdf output is not tested so far for masked data, hence netcdf_data_format is
188	!-- switched back to non-paralell output.
189	netcdf_data_format_save = netcdf_data_format
190	IF ( netcdf_data_format == 5 ) netcdf_data_format = 3
191	IF ( netcdf_data_format == 6 ) netcdf_data_format = 4
192
193	!
194	!-- Open output file.
195	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
196	CALL check_open( 200+mid+av*max_masks )
197	ENDIF
198
199	!
200	!-- Allocate total and local output arrays.
201	#if defined( __parallel )
202	IF ( myid == 0 ) THEN
203	ALLOCATE( total_pf( mask_size(mid,1),mask_size(mid,2),mask_size(mid,3) ) )
204	ENDIF
205	#endif
206	ALLOCATE( local_pf( mask_size_l(mid,1),mask_size_l(mid,2), mask_size_l(mid,3) ) )
207
208	!
209	!-- Update the netCDF time axis.
210	domask_time_count(mid,av) = domask_time_count(mid,av) + 1
211	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
212	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), &
213	(/ time_since_reference_point /), &
214	start = (/ domask_time_count(mid,av) /), &
215	count = (/ 1 /) )
216	CALL netcdf_handle_error( 'data_output_mask', 460 )
217	ENDIF
218
219	!
220	!-- Loop over all variables to be written.
221	ivar = 1
222
223	DO WHILE ( domask(mid,av,ivar)(1:1) /= ' ' )
224	!
225	!-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange
226	IF ( netcdf_data_format < 5 .AND. myid == 0 .AND. ivar > 1 ) THEN
227	DEALLOCATE( local_pf )
228	ALLOCATE( local_pf( mask_size_l(mid,1),mask_size_l(mid,2), mask_size_l(mid,3) ) )
229	ENDIF
230	!
231	!-- Set masking flag for topography for not resorted arrays
232	flag_nr = 0
233	!
234	!-- Store the variable chosen.
235	resorted = .FALSE.
236	SELECT CASE ( TRIM( domask(mid,av,ivar) ) )
237
238	CASE ( 'e' )
239	IF ( av == 0 ) THEN
240	to_be_resorted => e
241	ELSE
242	to_be_resorted => e_av
243	ENDIF
244
245	CASE ( 'thetal' )
246	IF ( av == 0 ) THEN
247	to_be_resorted => pt
248	ELSE
249	to_be_resorted => lpt_av
250	ENDIF
251
252	CASE ( 'nc' )
253	IF ( av == 0 ) THEN
254	to_be_resorted => nc
255	ELSE
256	to_be_resorted => nc_av
257	ENDIF
258
259	CASE ( 'nr' )
260	IF ( av == 0 ) THEN
261	to_be_resorted => nr
262	ELSE
263	to_be_resorted => nr_av
264	ENDIF
265
266	CASE ( 'p' )
267	IF ( av == 0 ) THEN
268	to_be_resorted => p
269	ELSE
270	to_be_resorted => p_av
271	ENDIF
272
273	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
274	IF ( av == 0 ) THEN
275	tend = prt_count
276	CALL exchange_horiz( tend, nbgp )
277	IF ( .NOT. mask_surface(mid) ) THEN
278	DO i = 1, mask_size_l(mid,1)
279	DO j = 1, mask_size_l(mid,2)
280	DO k = 1, mask_size_l(mid,3)
281	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
282	ENDDO
283	ENDDO
284	ENDDO
285	ELSE
286	!
287	!-- Terrain-following masked output
288	DO i = 1, mask_size_l(mid,1)
289	DO j = 1, mask_size_l(mid,2)
290	!-- Get k index of the highest terraing surface
291	im = mask_i(mid,i)
292	jm = mask_j(mid,j)
293	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 ) ), &
294	DIM = 1 ) - 1
295	DO k = 1, mask_size_l(mid,3)
296	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
297	!-- Set value if not in building
298	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
299	local_pf(i,j,k) = fill_value
300	ELSE
301	local_pf(i,j,k) = tend(kk,jm,im)
302	ENDIF
303	ENDDO
304	ENDDO
305	ENDDO
306	ENDIF
307	resorted = .TRUE.
308	ELSE
309	CALL exchange_horiz( pc_av, nbgp )
310	to_be_resorted => pc_av
311	ENDIF
312
313	CASE ( 'pr' ) ! mean particle radius (effective radius)
314	IF ( av == 0 ) THEN
315	IF ( time_since_reference_point >= particle_advection_start ) THEN
316	DO i = nxl, nxr
317	DO j = nys, nyn
318	DO k = nzb, nz_do3d
319	number_of_particles = prt_count(k,j,i)
320	IF ( number_of_particles <= 0 ) CYCLE
321	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
322	s_r2 = 0.0_wp
323	s_r3 = 0.0_wp
324	DO n = 1, number_of_particles
325	IF ( particles(n)%particle_mask ) THEN
326	s_r2 = s_r2 + grid_particles(k,j,i)%particles(n)%radius*2 &
327	grid_particles(k,j,i)%particles(n)%weight_factor
328	s_r3 = s_r3 + grid_particles(k,j,i)%particles(n)%radius*3 &
329	grid_particles(k,j,i)%particles(n)%weight_factor
330	ENDIF
331	ENDDO
332	IF ( s_r2 > 0.0_wp ) THEN
333	mean_r = s_r3 / s_r2
334	ELSE
335	mean_r = 0.0_wp
336	ENDIF
337	tend(k,j,i) = mean_r
338	ENDDO
339	ENDDO
340	ENDDO
341	CALL exchange_horiz( tend, nbgp )
342	ELSE
343	tend = 0.0_wp
344	ENDIF
345	IF ( .NOT. mask_surface(mid) ) THEN
346	DO i = 1, mask_size_l(mid,1)
347	DO j = 1, mask_size_l(mid,2)
348	DO k = 1, mask_size_l(mid,3)
349	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
350	ENDDO
351	ENDDO
352	ENDDO
353	ELSE
354	!
355	!-- Terrain-following masked output
356	DO i = 1, mask_size_l(mid,1)
357	DO j = 1, mask_size_l(mid,2)
358	!-- Get k index of the highest terraing surface
359	im = mask_i(mid,i)
360	jm = mask_j(mid,j)
361	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
362	DIM = 1 ) - 1
363	DO k = 1, mask_size_l(mid,3)
364	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
365	!-- Set value if not in building
366	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
367	local_pf(i,j,k) = fill_value
368	ELSE
369	local_pf(i,j,k) = tend(kk,jm,im)
370	ENDIF
371	ENDDO
372	ENDDO
373	ENDDO
374	ENDIF
375	resorted = .TRUE.
376	ELSE
377	CALL exchange_horiz( pr_av, nbgp )
378	to_be_resorted => pr_av
379	ENDIF
380
381	CASE ( 'theta' )
382	IF ( av == 0 ) THEN
383	IF ( .NOT. bulk_cloud_model ) THEN
384	to_be_resorted => pt
385	ELSE
386	IF ( .NOT. mask_surface(mid) ) THEN
387	DO i = 1, mask_size_l(mid,1)
388	DO j = 1, mask_size_l(mid,2)
389	DO k = 1, mask_size_l(mid,3)
390	local_pf(i,j,k) = pt( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) ) &
391	+ lv_d_cp * d_exner( mask_k(mid,k) ) * &
392	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i) )
393	ENDDO
394	ENDDO
395	ENDDO
396	ELSE
397	!
398	!-- Terrain-following masked output
399	DO i = 1, mask_size_l(mid,1)
400	DO j = 1, mask_size_l(mid,2)
401	!-- Get k index of the highest terraing surface
402	im = mask_i(mid,i)
403	jm = mask_j(mid,j)
404	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
405	DIM = 1 ) - 1
406	DO k = 1, mask_size_l(mid,3)
407	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
408	!-- Set value if not in building
409	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
410	local_pf(i,j,k) = fill_value
411	ELSE
412	local_pf(i,j,k) = pt(kk,jm,im) + &
413	lv_d_cp * d_exner(kk) * ql(kk,jm,im)
414	ENDIF
415	ENDDO
416	ENDDO
417	ENDDO
418	ENDIF
419	resorted = .TRUE.
420	ENDIF
421	ELSE
422	to_be_resorted => pt_av
423	ENDIF
424
425	CASE ( 'q' )
426	IF ( av == 0 ) THEN
427	to_be_resorted => q
428	ELSE
429	to_be_resorted => q_av
430	ENDIF
431
432	CASE ( 'qc' )
433	IF ( av == 0 ) THEN
434	to_be_resorted => qc
435	ELSE
436	to_be_resorted => qc_av
437	ENDIF
438
439	CASE ( 'ql' )
440	IF ( av == 0 ) THEN
441	to_be_resorted => ql
442	ELSE
443	to_be_resorted => ql_av
444	ENDIF
445
446	CASE ( 'ql_c' )
447	IF ( av == 0 ) THEN
448	to_be_resorted => ql_c
449	ELSE
450	to_be_resorted => ql_c_av
451	ENDIF
452
453	CASE ( 'ql_v' )
454	IF ( av == 0 ) THEN
455	to_be_resorted => ql_v
456	ELSE
457	to_be_resorted => ql_v_av
458	ENDIF
459
460	CASE ( 'ql_vp' )
461	IF ( av == 0 ) THEN
462	IF ( time_since_reference_point >= particle_advection_start ) THEN
463	DO i = nxl, nxr
464	DO j = nys, nyn
465	DO k = nzb, nz_do3d
466	number_of_particles = prt_count(k,j,i)
467	IF ( number_of_particles <= 0 ) CYCLE
468	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
469	DO n = 1, number_of_particles
470	IF ( particles(n)%particle_mask ) THEN
471	tend(k,j,i) = tend(k,j,i) + &
472	particles(n)%weight_factor / prt_count(k,j,i)
473	ENDIF
474	ENDDO
475	ENDDO
476	ENDDO
477	ENDDO
478	CALL exchange_horiz( tend, nbgp )
479	ELSE
480	tend = 0.0_wp
481	ENDIF
482	IF ( .NOT. mask_surface(mid) ) THEN
483	DO i = 1, mask_size_l(mid,1)
484	DO j = 1, mask_size_l(mid,2)
485	DO k = 1, mask_size_l(mid,3)
486	local_pf(i,j,k) = tend( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
487	ENDDO
488	ENDDO
489	ENDDO
490	ELSE
491	!
492	!-- Terrain-following masked output
493	DO i = 1, mask_size_l(mid,1)
494	DO j = 1, mask_size_l(mid,2)
495	!-- Get k index of the highest terraing surface
496	im = mask_i(mid,i)
497	jm = mask_j(mid,j)
498	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
499	DIM = 1 ) - 1
500	DO k = 1, mask_size_l(mid,3)
501	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
502	!-- Set value if not in building
503	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
504	local_pf(i,j,k) = fill_value
505	ELSE
506	local_pf(i,j,k) = tend(kk,jm,im)
507	ENDIF
508	ENDDO
509	ENDDO
510	ENDDO
511	ENDIF
512	resorted = .TRUE.
513	ELSE
514	CALL exchange_horiz( ql_vp_av, nbgp )
515	to_be_resorted => ql_vp_av
516	ENDIF
517
518	CASE ( 'qv' )
519	IF ( av == 0 ) THEN
520	IF ( .NOT. mask_surface(mid) ) THEN
521	DO i = 1, mask_size_l(mid,1)
522	DO j = 1, mask_size_l(mid,2)
523	DO k = 1, mask_size_l(mid,3)
524	local_pf(i,j,k) = q( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) ) - &
525	ql( mask_k(mid,k), mask_j(mid,j), mask_i(mid,i) )
526	ENDDO
527	ENDDO
528	ENDDO
529	ELSE
530	!
531	!-- Terrain-following masked output
532	DO i = 1, mask_size_l(mid,1)
533	DO j = 1, mask_size_l(mid,2)
534	!-- Get k index of the highest terraing surface
535	im = mask_i(mid,i)
536	jm = mask_j(mid,j)
537	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 )), &
538	DIM = 1 ) - 1
539	DO k = 1, mask_size_l(mid,3)
540	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
541	!-- Set value if not in building
542	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
543	local_pf(i,j,k) = fill_value
544	ELSE
545	local_pf(i,j,k) = q(kk,jm,im) - ql(kk,jm,im)
546	ENDIF
547	ENDDO
548	ENDDO
549	ENDDO
550	ENDIF
551	resorted = .TRUE.
552	ELSE
553	to_be_resorted => qv_av
554	ENDIF
555
556	CASE ( 'qr' )
557	IF ( av == 0 ) THEN
558	to_be_resorted => qr
559	ELSE
560	to_be_resorted => qr_av
561	ENDIF
562
563	CASE ( 'rho_sea_water' )
564	IF ( av == 0 ) THEN
565	to_be_resorted => rho_ocean
566	ELSE
567	to_be_resorted => rho_ocean_av
568	ENDIF
569
570	CASE ( 's' )
571	IF ( av == 0 ) THEN
572	to_be_resorted => s
573	ELSE
574	to_be_resorted => s_av
575	ENDIF
576
577	CASE ( 'sa' )
578	IF ( av == 0 ) THEN
579	to_be_resorted => sa
580	ELSE
581	to_be_resorted => sa_av
582	ENDIF
583
584	CASE ( 'u' )
585	flag_nr = 1
586	IF ( av == 0 ) THEN
587	to_be_resorted => u
588	ELSE
589	to_be_resorted => u_av
590	ENDIF
591
592	CASE ( 'v' )
593	flag_nr = 2
594	IF ( av == 0 ) THEN
595	to_be_resorted => v
596	ELSE
597	to_be_resorted => v_av
598	ENDIF
599
600	CASE ( 'thetav' )
601	IF ( av == 0 ) THEN
602	to_be_resorted => vpt
603	ELSE
604	to_be_resorted => vpt_av
605	ENDIF
606
607	CASE ( 'w' )
608	flag_nr = 3
609	IF ( av == 0 ) THEN
610	to_be_resorted => w
611	ELSE
612	to_be_resorted => w_av
613	ENDIF
614
615	CASE DEFAULT
616	!
617	!-- Set flag to steer output of radiation, land-surface, or user-defined quantities
618	found = .FALSE.
619	!
620	!-- Radiation quantity
621	IF ( .NOT. found .AND. radiation ) THEN
622	CALL radiation_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
623	ENDIF
624
625	IF ( .NOT. found .AND. air_chemistry ) THEN
626	CALL chem_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
627	ENDIF
628	!
629	!-- Check for diagnostic quantities
630	IF ( .NOT. found ) THEN
631	CALL doq_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
632	ENDIF
633	!
634	!-- SALSA quantities
635	IF ( .NOT. found .AND. salsa ) THEN
636	CALL salsa_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
637	ENDIF
638	!
639	!-- User defined quantity
640	IF ( .NOT. found ) THEN
641	CALL user_data_output_mask( av, domask(mid,av,ivar), found, local_pf, mid )
642	ENDIF
643
644	resorted = .TRUE.
645
646	IF ( .NOT. found ) THEN
647	WRITE ( message_string, * ) 'no masked output available for: ', &
648	TRIM( domask(mid,av,ivar) )
649	CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 )
650	ENDIF
651
652	END SELECT
653
654	!
655	!-- Resort the array to be output, if not done above
656	IF ( .NOT. resorted ) THEN
657	IF ( .NOT. mask_surface(mid) ) THEN
658	!
659	!-- Default masked output
660	DO i = 1, mask_size_l(mid,1)
661	DO j = 1, mask_size_l(mid,2)
662	DO k = 1, mask_size_l(mid,3)
663	local_pf(i,j,k) = MERGE( to_be_resorted( mask_k(mid,k), &
664	mask_j(mid,j), &
665	mask_i(mid,i)), &
666	REAL( fill_value, KIND = wp ), &
667	BTEST( wall_flags_total_0( mask_k(mid,k), &
668	mask_j(mid,j), &
669	mask_i(mid,i) ), &
670	flag_nr ) &
671	)
672	ENDDO
673	ENDDO
674	ENDDO
675
676	ELSE
677	!
678	!-- Terrain-following masked output
679	DO i = 1, mask_size_l(mid,1)
680	DO j = 1, mask_size_l(mid,2)
681	!-- Get k index of the highest terraing surface
682	im = mask_i(mid,i)
683	jm = mask_j(mid,j)
684	ktt = MINLOC( MERGE( 1, 0, BTEST( wall_flags_total_0(:,jm,im), 5 ) ), &
685	DIM = 1 ) - 1
686	DO k = 1, mask_size_l(mid,3)
687	kk = MIN( ktt+mask_k(mid,k), nzt+1 )
688	!-- Set value if not in building
689	IF ( BTEST( wall_flags_total_0(kk,jm,im), 6 ) ) THEN
690	local_pf(i,j,k) = fill_value
691	ELSE
692	local_pf(i,j,k) = to_be_resorted(kk,jm,im)
693	ENDIF
694	ENDDO
695	ENDDO
696	ENDDO
697
698	ENDIF
699	ENDIF
700
701	!
702	!-- I/O block. I/O methods are implemented
703	!-- (1) for parallel execution
704	!-- a. with netCDF 4 parallel I/O-enabled library
705	!-- b. with netCDF 3 library
706	!-- (2) for serial execution.
707	!-- The choice of method depends on the correct setting of preprocessor
708	!-- directives __parallel and __netcdf4_parallel as well as on the parameter
709	!-- netcdf_data_format.
710	#if defined( __parallel )
711	#if defined( __netcdf4_parallel )
712	IF ( netcdf_data_format > 4 ) THEN
713	!
714	!-- (1) a. Parallel I/O using netCDF 4 (not yet tested)
715	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
716	id_var_domask(mid,av,ivar), local_pf, &
717	start = (/ mask_start_l(mid,1), mask_start_l(mid,2), &
718	mask_start_l(mid,3), domask_time_count(mid,av) /), &
719	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
720	mask_size_l(mid,3), 1 /) )
721	CALL netcdf_handle_error( 'data_output_mask', 461 )
722	ELSE
723	#endif
724	!
725	!-- (1) b. Conventional I/O only through PE0
726	!-- PE0 receives partial arrays from all processors of the respective mask and outputs them.
727	!-- Here a barrier has to be set, because otherwise "-MPI- FATAL: Remote protocol queue full"
728	!-- may occur.
729	CALL MPI_BARRIER( comm2d, ierr )
730
731	ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3)
732	IF ( myid == 0 ) THEN
733	!
734	!-- Local array can be relocated directly.
735	total_pf( mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, &
736	mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, &
737	mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) &
738	= local_pf
739	!
740	!-- Receive data from all other PEs.
741	DO n = 1, numprocs-1
742	!
743	!-- Receive index limits first, then array.
744	!-- Index limits are received in arbitrary order from the PEs.
745	CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, comm2d, status, ierr )
746	!
747	!-- Not all PEs have data for the mask
748	IF ( ind(1) /= -9999 ) THEN
749	ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * ( ind(6)-ind(5)+1 )
750	sender = status(MPI_SOURCE)
751	DEALLOCATE( local_pf )
752	ALLOCATE( local_pf( ind(1):ind(2),ind(3):ind(4),ind(5):ind(6) ) )
753	CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, MPI_REAL, sender, 1, comm2d,&
754	status, ierr )
755	total_pf( ind(1):ind(2),ind(3):ind(4),ind(5):ind(6) ) = local_pf
756	ENDIF
757	ENDDO
758
759	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
760	id_var_domask(mid,av,ivar), total_pf, &
761	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
762	count = (/ mask_size(mid,1), mask_size(mid,2), &
763	mask_size(mid,3), 1 /) )
764	CALL netcdf_handle_error( 'data_output_mask', 462 )
765
766	ELSE
767	!
768	!-- If at least part of the mask resides on the PE, send the index limits for the target
769	!-- array, otherwise send -9999 to PE0.
770	IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. &
771	mask_size_l(mid,3) > 0 ) THEN
772	ind(1) = mask_start_l(mid,1)
773	ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1
774	ind(3) = mask_start_l(mid,2)
775	ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1
776	ind(5) = mask_start_l(mid,3)
777	ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1
778	ELSE
779	ind(1) = -9999; ind(2) = -9999
780	ind(3) = -9999; ind(4) = -9999
781	ind(5) = -9999; ind(6) = -9999
782	ENDIF
783	CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr )
784	!
785	!-- If applicable, send data to PE0.
786	IF ( ind(1) /= -9999 ) THEN
787	CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, ierr )
788	ENDIF
789	ENDIF
790	!
791	!-- A barrier has to be set, because otherwise some PEs may proceed too fast so that PE0 may
792	!-- receive wrong data on tag 0.
793	CALL MPI_BARRIER( comm2d, ierr )
794	#if defined( __netcdf4_parallel )
795	ENDIF
796	#endif
797	#else
798	!
799	!-- (2) For serial execution of PALM, the single processor (PE0) holds all data and writes them
800	!-- directly to file.
801	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
802	id_var_domask(mid,av,ivar), local_pf, &
803	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
804	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
805	mask_size_l(mid,3), 1 /) )
806	CALL netcdf_handle_error( 'data_output_mask', 463 )
807	#endif
808
809	ivar = ivar + 1
810
811	ENDDO
812
813	!
814	!-- Deallocate temporary arrays.
815	DEALLOCATE( local_pf )
816	#if defined( __parallel )
817	IF ( myid == 0 ) THEN
818	DEALLOCATE( total_pf )
819	ENDIF
820	#endif
821
822	!
823	!-- Switch back to original format given by user (see beginning of this routine)
824	netcdf_data_format = netcdf_data_format_save
825
826	CALL cpu_log( log_point(49), 'data_output_mask', 'stop' )
827	#endif
828
829
830	END SUBROUTINE data_output_mask

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