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source: palm/trunk/SOURCE/data_output_mask.f90 @ 4103

Last change on this file since 4103 was 4069, checked in by Giersch, 5 years ago
Bugfix for masked output, compiler warning removed, test case for wind turbine model revised
Property svn:keywords set to `Id`
File size: 34.2 KB

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1	!> @file data_output_mask.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! -----------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_mask.f90 4069 2019-07-01 14:05:51Z gronemeier $
27	! Masked output running index mid has been introduced as a local variable to
28	! avoid runtime error (Loop variable has been modified) in time_integration
29	!
30	! 4039 2019-06-18 10:32:41Z suehring
31	! Modularize diagnostic output
32	!
33	! 3994 2019-05-22 18:08:09Z suehring
34	! output of turbulence intensity added
35	!
36	! 3665 2019-01-10 08:28:24Z raasch
37	! unused variables removed
38	!
39	! 3655 2019-01-07 16:51:22Z knoop
40	! Fix output time levels (use time_since_reference_point)
41	!
42	! 3589 2018-11-30 15:09:51Z suehring
43	! Move the control parameter "salsa" from salsa_mod.f90 to control_parameters
44	!
45	! 3582 2018-11-29 19:16:36Z suehring
46	! add variable description
47	!
48	! 3467 2018-10-30 19:05:21Z suehring
49	! Implementation of a new aerosol module salsa.
50	!
51	! 3435 2018-10-26 18:25:44Z gronemeier
52	! Add terrain-following output
53	!
54	! 3421 2018-10-24 18:39:32Z gronemeier
55	! Renamed output variables
56	!
57	! 3419 2018-10-24 17:27:31Z gronemeier
58	! Minor formatting (kanani)
59	! Call for chem_data_output_mask added (basit)
60	!
61	! 3274 2018-09-24 15:42:55Z knoop
62	! Modularization of all bulk cloud physics code components
63	!
64	! 3241 2018-09-12 15:02:00Z raasch
65	! unused variable removed
66	!
67	! 3083 2018-06-19 14:03:12Z gronemeier
68	!
69	!
70	! 3045 2018-05-28 07:55:41Z Giersch
71	! Error messages revised
72	!
73	! 3030 2018-05-23 14:37:00Z raasch
74	! variable if renamed ivar
75	!
76	! 2718 2018-01-02 08:49:38Z maronga
77	! Corrected "Former revisions" section
78	!
79	! 2696 2017-12-14 17:12:51Z kanani
80	! Change in file header (GPL part)
81	!
82	! 2292 2017-06-20 09:51:42Z schwenkel
83	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
84	! includes two more prognostic equations for cloud drop concentration (nc)
85	! and cloud water content (qc).
86	!
87	! 2101 2017-01-05 16:42:31Z suehring
88	!
89	! 2031 2016-10-21 15:11:58Z knoop
90	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
91	!
92	! 2000 2016-08-20 18:09:15Z knoop
93	! Forced header and separation lines into 80 columns
94	!
95	! 1980 2016-07-29 15:51:57Z suehring
96	! Bugfix, in order to steer user-defined output, setting flag found explicitly
97	! to .F.
98	!
99	! 1976 2016-07-27 13:28:04Z maronga
100	! Output of radiation quantities is now done directly in the respective module
101	!
102	! 1960 2016-07-12 16:34:24Z suehring
103	! Separate humidity and passive scalar
104	!
105	! 2016-03-06 18:36:17Z raasch
106	! name change of netcdf routines and module + related changes,
107	! switch back of netcdf data format moved from time integration routine to here
108	!
109	! 1691 2015-10-26 16:17:44Z maronga
110	! Added output of radiative heating rates for RRTMG
111	!
112	! 1682 2015-10-07 23:56:08Z knoop
113	! Code annotations made doxygen readable
114	!
115	! 1585 2015-04-30 07:05:52Z maronga
116	! Added support for RRTMG
117	!
118	! 1438 2014-07-22 14:14:06Z heinze
119	! +nr, qc, qr
120	!
121	! 1359 2014-04-11 17:15:14Z hoffmann
122	! New particle structure integrated.
123	!
124	! 1353 2014-04-08 15:21:23Z heinze
125	! REAL constants provided with KIND-attribute
126	!
127	! 1327 2014-03-21 11:00:16Z raasch
128	!
129	!
130	! 1320 2014-03-20 08:40:49Z raasch
131	! ONLY-attribute added to USE-statements,
132	! kind-parameters added to all INTEGER and REAL declaration statements,
133	! kinds are defined in new module kinds,
134	! revision history before 2012 removed,
135	! comment fields (!:) to be used for variable explanations added to
136	! all variable declaration statements
137	!
138	! 1318 2014-03-17 13:35:16Z raasch
139	! barrier argument removed from cpu_log,
140	! module interfaces removed
141	!
142	! 1092 2013-02-02 11:24:22Z raasch
143	! unused variables removed
144	!
145	! 1036 2012-10-22 13:43:42Z raasch
146	! code put under GPL (PALM 3.9)
147	!
148	! 1031 2012-10-19 14:35:30Z raasch
149	! netCDF4 without parallel file support implemented
150	!
151	! 1007 2012-09-19 14:30:36Z franke
152	! Bugfix: calculation of pr must depend on the particle weighting factor,
153	! missing calculation of ql_vp added
154	!
155	! 410 2009-12-04 17:05:40Z letzel
156	! Initial version
157	!
158	! Description:
159	! ------------
160	!> Masked data output in netCDF format for current mask (current value of mid).
161	!------------------------------------------------------------------------------!
162	SUBROUTINE data_output_mask( av, mid )
163
164
165
166	#if defined( __netcdf )
167	USE arrays_3d, &
168	ONLY: e, nc, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, &
169	tend, u, v, vpt, w, d_exner
170
171	USE averaging, &
172	ONLY: e_av, lpt_av, nc_av, nr_av, p_av, pc_av, pr_av, pt_av, q_av, &
173	qc_av, ql_av, ql_c_av, ql_v_av, ql_vp_av, qv_av, qr_av, &
174	rho_ocean_av, s_av, sa_av, u_av, v_av, vpt_av, w_av
175
176	USE basic_constants_and_equations_mod, &
177	ONLY: lv_d_cp
178
179	USE chemistry_model_mod, &
180	ONLY: chem_data_output_mask
181
182	USE control_parameters, &
183	ONLY: air_chemistry, domask, domask_no, domask_time_count, mask_i, &
184	mask_j, mask_k, mask_size, mask_size_l, mask_start_l, &
185	mask_surface, &
186	max_masks, message_string, nz_do3d, salsa, &
187	time_since_reference_point
188
189	USE diagnostic_output_quantities_mod, &
190	ONLY: doq_output_mask
191
192	USE cpulog, &
193	ONLY: cpu_log, log_point
194
195	USE indices, &
196	ONLY: nbgp, nxl, nxr, nyn, nys, nzb, nzt
197
198	USE kinds
199
200	USE bulk_cloud_model_mod, &
201	ONLY: bulk_cloud_model
202
203	USE NETCDF
204
205	USE netcdf_interface, &
206	ONLY: id_set_mask, id_var_domask, id_var_time_mask, nc_stat, &
207	netcdf_data_format, netcdf_handle_error
208
209	USE particle_attributes, &
210	ONLY: grid_particles, number_of_particles, particles, &
211	particle_advection_start, prt_count
212
213	USE pegrid
214
215	USE radiation_model_mod, &
216	ONLY: radiation, radiation_data_output_mask
217
218	USE salsa_mod, &
219	ONLY: salsa_data_output_mask
220
221	USE surface_mod, &
222	ONLY : get_topography_top_index_ji
223
224	IMPLICIT NONE
225
226	CHARACTER(LEN=5) :: grid !< flag to distinquish between staggered grids
227
228	INTEGER(iwp) :: av !< flag for (non-)average output
229	INTEGER(iwp) :: ngp !< number of grid points of an output slice
230	INTEGER(iwp) :: i !< loop index
231	INTEGER(iwp) :: ivar !< variable index
232	INTEGER(iwp) :: j !< loop index
233	INTEGER(iwp) :: k !< loop index
234	INTEGER(iwp) :: kk !< vertical index
235	INTEGER(iwp) :: mid !< masked output running index
236	INTEGER(iwp) :: n !< loop index
237	INTEGER(iwp) :: netcdf_data_format_save !< value of netcdf_data_format
238	INTEGER(iwp) :: sender !< PE id of sending PE
239	INTEGER(iwp) :: topo_top_ind !< k index of highest horizontal surface
240	INTEGER(iwp) :: ind(6) !< index limits (lower/upper bounds) of array 'local_2d'
241
242	LOGICAL :: found !< true if output variable was found
243	LOGICAL :: resorted !< true if variable is resorted
244
245	REAL(wp) :: mean_r !< mean particle radius
246	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
247	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
248
249	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
250	#if defined( __parallel )
251	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: total_pf !< collected output array
252	#endif
253	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< points to array which shall be output
254
255	!
256	!-- Return, if nothing to output
257	IF ( domask_no(mid,av) == 0 ) RETURN
258
259	CALL cpu_log (log_point(49),'data_output_mask','start')
260
261	!
262	!-- Parallel netcdf output is not tested so far for masked data, hence
263	!-- netcdf_data_format is switched back to non-paralell output.
264	netcdf_data_format_save = netcdf_data_format
265	IF ( netcdf_data_format == 5 ) netcdf_data_format = 3
266	IF ( netcdf_data_format == 6 ) netcdf_data_format = 4
267
268	!
269	!-- Open output file.
270	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
271	CALL check_open( 200+mid+av*max_masks )
272	ENDIF
273
274	!
275	!-- Allocate total and local output arrays.
276	#if defined( __parallel )
277	IF ( myid == 0 ) THEN
278	ALLOCATE( total_pf(mask_size(mid,1),mask_size(mid,2),mask_size(mid,3)) )
279	ENDIF
280	#endif
281	ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), &
282	mask_size_l(mid,3)) )
283
284	!
285	!-- Update the netCDF time axis.
286	domask_time_count(mid,av) = domask_time_count(mid,av) + 1
287	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
288	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), &
289	(/ time_since_reference_point /), &
290	start = (/ domask_time_count(mid,av) /), &
291	count = (/ 1 /) )
292	CALL netcdf_handle_error( 'data_output_mask', 460 )
293	ENDIF
294
295	!
296	!-- Loop over all variables to be written.
297	ivar = 1
298
299	DO WHILE ( domask(mid,av,ivar)(1:1) /= ' ' )
300	!
301	!-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange
302	IF ( netcdf_data_format < 5 .AND. myid == 0 .AND. ivar > 1 ) THEN
303	DEALLOCATE( local_pf )
304	ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), &
305	mask_size_l(mid,3)) )
306	ENDIF
307	!
308	!-- Set default grid for terrain-following output
309	grid = 's'
310	!
311	!-- Set flag to steer output of radiation, land-surface, or user-defined
312	!-- quantities
313	found = .FALSE.
314	!
315	!-- Store the variable chosen.
316	resorted = .FALSE.
317	SELECT CASE ( TRIM( domask(mid,av,ivar) ) )
318
319	CASE ( 'e' )
320	IF ( av == 0 ) THEN
321	to_be_resorted => e
322	ELSE
323	to_be_resorted => e_av
324	ENDIF
325
326	CASE ( 'thetal' )
327	IF ( av == 0 ) THEN
328	to_be_resorted => pt
329	ELSE
330	to_be_resorted => lpt_av
331	ENDIF
332
333	CASE ( 'nc' )
334	IF ( av == 0 ) THEN
335	to_be_resorted => nc
336	ELSE
337	to_be_resorted => nc_av
338	ENDIF
339
340	CASE ( 'nr' )
341	IF ( av == 0 ) THEN
342	to_be_resorted => nr
343	ELSE
344	to_be_resorted => nr_av
345	ENDIF
346
347	CASE ( 'p' )
348	IF ( av == 0 ) THEN
349	to_be_resorted => p
350	ELSE
351	to_be_resorted => p_av
352	ENDIF
353
354	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
355	IF ( av == 0 ) THEN
356	tend = prt_count
357	CALL exchange_horiz( tend, nbgp )
358	IF ( .NOT. mask_surface(mid) ) THEN
359	DO i = 1, mask_size_l(mid,1)
360	DO j = 1, mask_size_l(mid,2)
361	DO k = 1, mask_size_l(mid,3)
362	local_pf(i,j,k) = tend(mask_k(mid,k), &
363	mask_j(mid,j),mask_i(mid,i))
364	ENDDO
365	ENDDO
366	ENDDO
367	ELSE
368	!
369	!-- Terrain-following masked output
370	DO i = 1, mask_size_l(mid,1)
371	DO j = 1, mask_size_l(mid,2)
372	!
373	!-- Get k index of highest horizontal surface
374	topo_top_ind = &
375	get_topography_top_index_ji( mask_j(mid,j), &
376	mask_i(mid,i), &
377	grid )
378	DO k = 1, mask_size_l(mid,3)
379	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
380	local_pf(i,j,k) = &
381	tend(kk,mask_j(mid,j),mask_i(mid,i))
382	ENDDO
383	ENDDO
384	ENDDO
385	ENDIF
386	resorted = .TRUE.
387	ELSE
388	CALL exchange_horiz( pc_av, nbgp )
389	to_be_resorted => pc_av
390	ENDIF
391
392	CASE ( 'pr' ) ! mean particle radius (effective radius)
393	IF ( av == 0 ) THEN
394	IF ( time_since_reference_point >= particle_advection_start ) THEN
395	DO i = nxl, nxr
396	DO j = nys, nyn
397	DO k = nzb, nz_do3d
398	number_of_particles = prt_count(k,j,i)
399	IF (number_of_particles <= 0) CYCLE
400	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
401	s_r2 = 0.0_wp
402	s_r3 = 0.0_wp
403	DO n = 1, number_of_particles
404	IF ( particles(n)%particle_mask ) THEN
405	s_r2 = s_r2 + grid_particles(k,j,i)%particles(n)%radius*2 &
406	grid_particles(k,j,i)%particles(n)%weight_factor
407	s_r3 = s_r3 + grid_particles(k,j,i)%particles(n)%radius*3 &
408	grid_particles(k,j,i)%particles(n)%weight_factor
409	ENDIF
410	ENDDO
411	IF ( s_r2 > 0.0_wp ) THEN
412	mean_r = s_r3 / s_r2
413	ELSE
414	mean_r = 0.0_wp
415	ENDIF
416	tend(k,j,i) = mean_r
417	ENDDO
418	ENDDO
419	ENDDO
420	CALL exchange_horiz( tend, nbgp )
421	ELSE
422	tend = 0.0_wp
423	ENDIF
424	IF ( .NOT. mask_surface(mid) ) THEN
425	DO i = 1, mask_size_l(mid,1)
426	DO j = 1, mask_size_l(mid,2)
427	DO k = 1, mask_size_l(mid,3)
428	local_pf(i,j,k) = tend(mask_k(mid,k), &
429	mask_j(mid,j),mask_i(mid,i))
430	ENDDO
431	ENDDO
432	ENDDO
433	ELSE
434	!
435	!-- Terrain-following masked output
436	DO i = 1, mask_size_l(mid,1)
437	DO j = 1, mask_size_l(mid,2)
438	!
439	!-- Get k index of highest horizontal surface
440	topo_top_ind = &
441	get_topography_top_index_ji( mask_j(mid,j), &
442	mask_i(mid,i), &
443	grid )
444	DO k = 1, mask_size_l(mid,3)
445	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
446	local_pf(i,j,k) = &
447	tend(kk,mask_j(mid,j),mask_i(mid,i))
448	ENDDO
449	ENDDO
450	ENDDO
451	ENDIF
452	resorted = .TRUE.
453	ELSE
454	CALL exchange_horiz( pr_av, nbgp )
455	to_be_resorted => pr_av
456	ENDIF
457
458	CASE ( 'theta' )
459	IF ( av == 0 ) THEN
460	IF ( .NOT. bulk_cloud_model ) THEN
461	to_be_resorted => pt
462	ELSE
463	IF ( .NOT. mask_surface(mid) ) THEN
464	DO i = 1, mask_size_l(mid,1)
465	DO j = 1, mask_size_l(mid,2)
466	DO k = 1, mask_size_l(mid,3)
467	local_pf(i,j,k) = &
468	pt(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) &
469	+ lv_d_cp * d_exner(mask_k(mid,k)) * &
470	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i))
471	ENDDO
472	ENDDO
473	ENDDO
474	ELSE
475	!
476	!-- Terrain-following masked output
477	DO i = 1, mask_size_l(mid,1)
478	DO j = 1, mask_size_l(mid,2)
479	!
480	!-- Get k index of highest horizontal surface
481	topo_top_ind = &
482	get_topography_top_index_ji( mask_j(mid,j), &
483	mask_i(mid,i), &
484	grid )
485	DO k = 1, mask_size_l(mid,3)
486	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
487	local_pf(i,j,k) = &
488	pt(kk,mask_j(mid,j),mask_i(mid,i) ) &
489	+ lv_d_cp * d_exner(kk) * &
490	ql(kk,mask_j(mid,j),mask_i(mid,i))
491	ENDDO
492	ENDDO
493	ENDDO
494	ENDIF
495	resorted = .TRUE.
496	ENDIF
497	ELSE
498	to_be_resorted => pt_av
499	ENDIF
500
501	CASE ( 'q' )
502	IF ( av == 0 ) THEN
503	to_be_resorted => q
504	ELSE
505	to_be_resorted => q_av
506	ENDIF
507
508	CASE ( 'qc' )
509	IF ( av == 0 ) THEN
510	to_be_resorted => qc
511	ELSE
512	to_be_resorted => qc_av
513	ENDIF
514
515	CASE ( 'ql' )
516	IF ( av == 0 ) THEN
517	to_be_resorted => ql
518	ELSE
519	to_be_resorted => ql_av
520	ENDIF
521
522	CASE ( 'ql_c' )
523	IF ( av == 0 ) THEN
524	to_be_resorted => ql_c
525	ELSE
526	to_be_resorted => ql_c_av
527	ENDIF
528
529	CASE ( 'ql_v' )
530	IF ( av == 0 ) THEN
531	to_be_resorted => ql_v
532	ELSE
533	to_be_resorted => ql_v_av
534	ENDIF
535
536	CASE ( 'ql_vp' )
537	IF ( av == 0 ) THEN
538	IF ( time_since_reference_point >= particle_advection_start ) THEN
539	DO i = nxl, nxr
540	DO j = nys, nyn
541	DO k = nzb, nz_do3d
542	number_of_particles = prt_count(k,j,i)
543	IF (number_of_particles <= 0) CYCLE
544	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
545	DO n = 1, number_of_particles
546	IF ( particles(n)%particle_mask ) THEN
547	tend(k,j,i) = tend(k,j,i) + &
548	particles(n)%weight_factor / &
549	prt_count(k,j,i)
550	ENDIF
551	ENDDO
552	ENDDO
553	ENDDO
554	ENDDO
555	CALL exchange_horiz( tend, nbgp )
556	ELSE
557	tend = 0.0_wp
558	ENDIF
559	IF ( .NOT. mask_surface(mid) ) THEN
560	DO i = 1, mask_size_l(mid,1)
561	DO j = 1, mask_size_l(mid,2)
562	DO k = 1, mask_size_l(mid,3)
563	local_pf(i,j,k) = tend(mask_k(mid,k), &
564	mask_j(mid,j),mask_i(mid,i))
565	ENDDO
566	ENDDO
567	ENDDO
568	ELSE
569	!
570	!-- Terrain-following masked output
571	DO i = 1, mask_size_l(mid,1)
572	DO j = 1, mask_size_l(mid,2)
573	!
574	!-- Get k index of highest horizontal surface
575	topo_top_ind = &
576	get_topography_top_index_ji( mask_j(mid,j), &
577	mask_i(mid,i), &
578	grid )
579	DO k = 1, mask_size_l(mid,3)
580	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
581	local_pf(i,j,k) = &
582	tend(kk,mask_j(mid,j),mask_i(mid,i))
583	ENDDO
584	ENDDO
585	ENDDO
586	ENDIF
587	resorted = .TRUE.
588	ELSE
589	CALL exchange_horiz( ql_vp_av, nbgp )
590	to_be_resorted => ql_vp_av
591	ENDIF
592
593	CASE ( 'qv' )
594	IF ( av == 0 ) THEN
595	IF ( .NOT. mask_surface(mid) ) THEN
596	DO i = 1, mask_size_l(mid,1)
597	DO j = 1, mask_size_l(mid,2)
598	DO k = 1, mask_size_l(mid,3)
599	local_pf(i,j,k) = &
600	q(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) - &
601	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i))
602	ENDDO
603	ENDDO
604	ENDDO
605	ELSE
606	!
607	!-- Terrain-following masked output
608	DO i = 1, mask_size_l(mid,1)
609	DO j = 1, mask_size_l(mid,2)
610	!
611	!-- Get k index of highest horizontal surface
612	topo_top_ind = &
613	get_topography_top_index_ji( mask_j(mid,j), &
614	mask_i(mid,i), &
615	grid )
616	DO k = 1, mask_size_l(mid,3)
617	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
618	local_pf(i,j,k) = &
619	q(kk,mask_j(mid,j),mask_i(mid,i)) - &
620	ql(kk,mask_j(mid,j),mask_i(mid,i))
621	ENDDO
622	ENDDO
623	ENDDO
624	ENDIF
625	resorted = .TRUE.
626	ELSE
627	to_be_resorted => qv_av
628	ENDIF
629
630	CASE ( 'qr' )
631	IF ( av == 0 ) THEN
632	to_be_resorted => qr
633	ELSE
634	to_be_resorted => qr_av
635	ENDIF
636
637	CASE ( 'rho_sea_water' )
638	IF ( av == 0 ) THEN
639	to_be_resorted => rho_ocean
640	ELSE
641	to_be_resorted => rho_ocean_av
642	ENDIF
643
644	CASE ( 's' )
645	IF ( av == 0 ) THEN
646	to_be_resorted => s
647	ELSE
648	to_be_resorted => s_av
649	ENDIF
650
651	CASE ( 'sa' )
652	IF ( av == 0 ) THEN
653	to_be_resorted => sa
654	ELSE
655	to_be_resorted => sa_av
656	ENDIF
657
658	CASE ( 'u' )
659	IF ( av == 0 ) THEN
660	to_be_resorted => u
661	ELSE
662	to_be_resorted => u_av
663	ENDIF
664
665	CASE ( 'v' )
666	IF ( av == 0 ) THEN
667	to_be_resorted => v
668	ELSE
669	to_be_resorted => v_av
670	ENDIF
671
672	CASE ( 'thetav' )
673	IF ( av == 0 ) THEN
674	to_be_resorted => vpt
675	ELSE
676	to_be_resorted => vpt_av
677	ENDIF
678
679	CASE ( 'w' )
680	grid = 'w'
681	IF ( av == 0 ) THEN
682	to_be_resorted => w
683	ELSE
684	to_be_resorted => w_av
685	ENDIF
686
687	CASE DEFAULT
688
689	!
690	!-- Radiation quantity
691	IF ( radiation ) THEN
692	CALL radiation_data_output_mask(av, domask(mid,av,ivar), found,&
693	local_pf, mid )
694	ENDIF
695
696	IF ( air_chemistry ) THEN
697	CALL chem_data_output_mask(av, domask(mid,av,ivar), found, &
698	local_pf, mid )
699	ENDIF
700	!
701	!-- Check for diagnostic quantities
702	CALL doq_output_mask( av, domask(mid,av,ivar), found, local_pf, &
703	mid)
704	!
705	!-- SALSA quantities
706	IF ( salsa ) THEN
707	CALL salsa_data_output_mask( av, domask(mid,av,ivar), found, &
708	local_pf, mid )
709	ENDIF
710	!
711	!-- User defined quantity
712	IF ( .NOT. found ) THEN
713	CALL user_data_output_mask(av, domask(mid,av,ivar), found, &
714	local_pf, mid )
715	ENDIF
716
717	resorted = .TRUE.
718
719	IF ( .NOT. found ) THEN
720	WRITE ( message_string, * ) 'no masked output available for: ',&
721	TRIM( domask(mid,av,ivar) )
722	CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 )
723	ENDIF
724
725	END SELECT
726
727	!
728	!-- Resort the array to be output, if not done above
729	IF ( .NOT. resorted ) THEN
730	IF ( .NOT. mask_surface(mid) ) THEN
731	!
732	!-- Default masked output
733	DO i = 1, mask_size_l(mid,1)
734	DO j = 1, mask_size_l(mid,2)
735	DO k = 1, mask_size_l(mid,3)
736	local_pf(i,j,k) = to_be_resorted(mask_k(mid,k), &
737	mask_j(mid,j),mask_i(mid,i))
738	ENDDO
739	ENDDO
740	ENDDO
741
742	ELSE
743	!
744	!-- Terrain-following masked output
745	DO i = 1, mask_size_l(mid,1)
746	DO j = 1, mask_size_l(mid,2)
747	!
748	!-- Get k index of highest horizontal surface
749	topo_top_ind = get_topography_top_index_ji( mask_j(mid,j), &
750	mask_i(mid,i), &
751	grid )
752	!
753	!-- Save output array
754	DO k = 1, mask_size_l(mid,3)
755	local_pf(i,j,k) = to_be_resorted( &
756	MIN( topo_top_ind+mask_k(mid,k), &
757	nzt+1 ), &
758	mask_j(mid,j), &
759	mask_i(mid,i) )
760	ENDDO
761	ENDDO
762	ENDDO
763
764	ENDIF
765	ENDIF
766
767	!
768	!-- I/O block. I/O methods are implemented
769	!-- (1) for parallel execution
770	!-- a. with netCDF 4 parallel I/O-enabled library
771	!-- b. with netCDF 3 library
772	!-- (2) for serial execution.
773	!-- The choice of method depends on the correct setting of preprocessor
774	!-- directives __parallel and __netcdf4_parallel as well as on the parameter
775	!-- netcdf_data_format.
776	#if defined( __parallel )
777	#if defined( __netcdf4_parallel )
778	IF ( netcdf_data_format > 4 ) THEN
779	!
780	!-- (1) a. Parallel I/O using netCDF 4 (not yet tested)
781	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
782	id_var_domask(mid,av,ivar), local_pf, &
783	start = (/ mask_start_l(mid,1), mask_start_l(mid,2), &
784	mask_start_l(mid,3), domask_time_count(mid,av) /), &
785	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
786	mask_size_l(mid,3), 1 /) )
787	CALL netcdf_handle_error( 'data_output_mask', 461 )
788	ELSE
789	#endif
790	!
791	!-- (1) b. Conventional I/O only through PE0
792	!-- PE0 receives partial arrays from all processors of the respective mask
793	!-- and outputs them. Here a barrier has to be set, because otherwise
794	!-- "-MPI- FATAL: Remote protocol queue full" may occur.
795	CALL MPI_BARRIER( comm2d, ierr )
796
797	ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3)
798	IF ( myid == 0 ) THEN
799	!
800	!-- Local array can be relocated directly.
801	total_pf( &
802	mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, &
803	mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, &
804	mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) &
805	= local_pf
806	!
807	!-- Receive data from all other PEs.
808	DO n = 1, numprocs-1
809	!
810	!-- Receive index limits first, then array.
811	!-- Index limits are received in arbitrary order from the PEs.
812	CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, &
813	comm2d, status, ierr )
814	!
815	!-- Not all PEs have data for the mask
816	IF ( ind(1) /= -9999 ) THEN
817	ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * &
818	( ind(6)-ind(5)+1 )
819	sender = status(MPI_SOURCE)
820	DEALLOCATE( local_pf )
821	ALLOCATE(local_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)))
822	CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, &
823	MPI_REAL, sender, 1, comm2d, status, ierr )
824	total_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)) &
825	= local_pf
826	ENDIF
827	ENDDO
828
829	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
830	id_var_domask(mid,av,ivar), total_pf, &
831	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
832	count = (/ mask_size(mid,1), mask_size(mid,2), &
833	mask_size(mid,3), 1 /) )
834	CALL netcdf_handle_error( 'data_output_mask', 462 )
835
836	ELSE
837	!
838	!-- If at least part of the mask resides on the PE, send the index
839	!-- limits for the target array, otherwise send -9999 to PE0.
840	IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. &
841	mask_size_l(mid,3) > 0 ) &
842	THEN
843	ind(1) = mask_start_l(mid,1)
844	ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1
845	ind(3) = mask_start_l(mid,2)
846	ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1
847	ind(5) = mask_start_l(mid,3)
848	ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1
849	ELSE
850	ind(1) = -9999; ind(2) = -9999
851	ind(3) = -9999; ind(4) = -9999
852	ind(5) = -9999; ind(6) = -9999
853	ENDIF
854	CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr )
855	!
856	!-- If applicable, send data to PE0.
857	IF ( ind(1) /= -9999 ) THEN
858	CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, &
859	ierr )
860	ENDIF
861	ENDIF
862	!
863	!-- A barrier has to be set, because otherwise some PEs may proceed too
864	!-- fast so that PE0 may receive wrong data on tag 0.
865	CALL MPI_BARRIER( comm2d, ierr )
866	#if defined( __netcdf4_parallel )
867	ENDIF
868	#endif
869	#else
870	!
871	!-- (2) For serial execution of PALM, the single processor (PE0) holds all
872	!-- data and writes them directly to file.
873	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
874	id_var_domask(mid,av,ivar), local_pf, &
875	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
876	count = (/ mask_size_l(mid,1), mask_size_l(mid,2),&
877	mask_size_l(mid,3), 1 /) )
878	CALL netcdf_handle_error( 'data_output_mask', 463 )
879	#endif
880
881	ivar = ivar + 1
882
883	ENDDO
884
885	!
886	!-- Deallocate temporary arrays.
887	DEALLOCATE( local_pf )
888	#if defined( __parallel )
889	IF ( myid == 0 ) THEN
890	DEALLOCATE( total_pf )
891	ENDIF
892	#endif
893
894	!
895	!-- Switch back to original format given by user (see beginning of this routine)
896	netcdf_data_format = netcdf_data_format_save
897
898	CALL cpu_log( log_point(49), 'data_output_mask', 'stop' )
899	#endif
900
901
902	END SUBROUTINE data_output_mask

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