1 | SUBROUTINE data_output_mask( av ) |
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2 | |
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3 | !--------------------------------------------------------------------------------! |
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4 | ! This file is part of PALM. |
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5 | ! |
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6 | ! PALM is free software: you can redistribute it and/or modify it under the terms |
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7 | ! of the GNU General Public License as published by the Free Software Foundation, |
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8 | ! either version 3 of the License, or (at your option) any later version. |
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9 | ! |
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10 | ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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11 | ! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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12 | ! A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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13 | ! |
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14 | ! You should have received a copy of the GNU General Public License along with |
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15 | ! PALM. If not, see <http://www.gnu.org/licenses/>. |
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16 | ! |
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17 | ! Copyright 1997-2014 Leibniz Universitaet Hannover |
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18 | !--------------------------------------------------------------------------------! |
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19 | ! |
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20 | ! Current revisions: |
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21 | ! ----------------- |
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22 | ! |
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23 | ! |
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24 | ! Former revisions: |
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25 | ! ----------------- |
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26 | ! $Id: data_output_mask.f90 1329 2014-03-21 11:09:15Z heinze $ |
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27 | ! |
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28 | ! 1327 2014-03-21 11:00:16Z raasch |
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29 | ! |
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30 | ! |
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31 | ! 1320 2014-03-20 08:40:49Z raasch |
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32 | ! ONLY-attribute added to USE-statements, |
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33 | ! kind-parameters added to all INTEGER and REAL declaration statements, |
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34 | ! kinds are defined in new module kinds, |
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35 | ! revision history before 2012 removed, |
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36 | ! comment fields (!:) to be used for variable explanations added to |
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37 | ! all variable declaration statements |
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38 | ! |
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39 | ! 1318 2014-03-17 13:35:16Z raasch |
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40 | ! barrier argument removed from cpu_log, |
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41 | ! module interfaces removed |
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42 | ! |
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43 | ! 1092 2013-02-02 11:24:22Z raasch |
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44 | ! unused variables removed |
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45 | ! |
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46 | ! 1036 2012-10-22 13:43:42Z raasch |
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47 | ! code put under GPL (PALM 3.9) |
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48 | ! |
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49 | ! 1031 2012-10-19 14:35:30Z raasch |
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50 | ! netCDF4 without parallel file support implemented |
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51 | ! |
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52 | ! 1007 2012-09-19 14:30:36Z franke |
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53 | ! Bugfix: calculation of pr must depend on the particle weighting factor, |
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54 | ! missing calculation of ql_vp added |
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55 | ! |
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56 | ! 410 2009-12-04 17:05:40Z letzel |
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57 | ! Initial version |
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58 | ! |
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59 | ! Description: |
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60 | ! ------------ |
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61 | ! Masked data output in netCDF format for current mask (current value of mid). |
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62 | !------------------------------------------------------------------------------! |
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63 | |
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64 | #if defined( __netcdf ) |
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65 | USE arrays_3d, & |
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66 | ONLY: e, p, pt, q, ql, ql_c, ql_v, rho, sa, tend, u, v, vpt, w |
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67 | |
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68 | USE averaging, & |
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69 | ONLY: e_av, lpt_av, p_av, pc_av, pr_av, pt_av, q_av, ql_av, ql_c_av, & |
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70 | ql_v_av, ql_vp_av, qv_av, rho_av, s_av, sa_av, u_av, v_av, & |
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71 | vpt_av, w_av |
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72 | |
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73 | USE cloud_parameters, & |
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74 | ONLY: l_d_cp, pt_d_t |
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75 | |
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76 | USE control_parameters, & |
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77 | ONLY: cloud_physics, domask, domask_no, domask_time_count, mask_i, & |
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78 | mask_j, mask_k, mask_size, mask_size_l, mask_start_l, & |
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79 | max_masks, message_string, mid, netcdf_data_format, & |
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80 | nz_do3d, simulated_time |
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81 | |
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82 | USE cpulog, & |
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83 | ONLY: cpu_log, log_point |
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84 | |
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85 | USE indices, & |
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86 | ONLY: nbgp, nxl, nxr, nyn, nys, nzb, nzt |
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87 | |
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88 | USE kinds |
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89 | |
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90 | USE netcdf |
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91 | |
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92 | USE netcdf_control |
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93 | |
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94 | USE particle_attributes, & |
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95 | ONLY: particles, prt_count, prt_start_index |
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96 | |
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97 | USE pegrid |
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98 | |
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99 | IMPLICIT NONE |
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100 | |
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101 | INTEGER(iwp) :: av !: |
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102 | INTEGER(iwp) :: ngp !: |
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103 | INTEGER(iwp) :: i !: |
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104 | INTEGER(iwp) :: if !: |
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105 | INTEGER(iwp) :: j !: |
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106 | INTEGER(iwp) :: k !: |
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107 | INTEGER(iwp) :: n !: |
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108 | INTEGER(iwp) :: psi !: |
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109 | INTEGER(iwp) :: sender !: |
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110 | INTEGER(iwp) :: ind(6) !: |
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111 | |
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112 | LOGICAL :: found !: |
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113 | LOGICAL :: resorted !: |
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114 | |
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115 | REAL(wp) :: mean_r !: |
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116 | REAL(wp) :: s_r3 !: |
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117 | REAL(wp) :: s_r4 !: |
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118 | |
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119 | REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !: |
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120 | #if defined( __parallel ) |
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121 | REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: total_pf !: |
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122 | #endif |
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123 | REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !: |
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124 | |
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125 | ! |
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126 | !-- Return, if nothing to output |
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127 | IF ( domask_no(mid,av) == 0 ) RETURN |
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128 | |
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129 | CALL cpu_log (log_point(49),'data_output_mask','start') |
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130 | |
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131 | ! |
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132 | !-- Open output file. |
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133 | IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN |
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134 | CALL check_open( 200+mid+av*max_masks ) |
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135 | ENDIF |
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136 | |
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137 | ! |
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138 | !-- Allocate total and local output arrays. |
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139 | #if defined( __parallel ) |
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140 | IF ( myid == 0 ) THEN |
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141 | ALLOCATE( total_pf(mask_size(mid,1),mask_size(mid,2),mask_size(mid,3)) ) |
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142 | ENDIF |
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143 | #endif |
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144 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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145 | mask_size_l(mid,3)) ) |
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146 | |
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147 | ! |
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148 | !-- Update the netCDF time axis. |
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149 | domask_time_count(mid,av) = domask_time_count(mid,av) + 1 |
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150 | IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN |
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151 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), & |
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152 | (/ simulated_time /), & |
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153 | start = (/ domask_time_count(mid,av) /), & |
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154 | count = (/ 1 /) ) |
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155 | CALL handle_netcdf_error( 'data_output_mask', 460 ) |
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156 | ENDIF |
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157 | |
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158 | ! |
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159 | !-- Loop over all variables to be written. |
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160 | if = 1 |
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161 | |
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162 | DO WHILE ( domask(mid,av,if)(1:1) /= ' ' ) |
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163 | ! |
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164 | !-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange |
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165 | IF ( netcdf_data_format < 5 .AND. myid == 0 .AND. if > 1 ) THEN |
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166 | DEALLOCATE( local_pf ) |
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167 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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168 | mask_size_l(mid,3)) ) |
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169 | ENDIF |
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170 | ! |
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171 | !-- Store the variable chosen. |
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172 | resorted = .FALSE. |
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173 | SELECT CASE ( TRIM( domask(mid,av,if) ) ) |
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174 | |
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175 | CASE ( 'e' ) |
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176 | IF ( av == 0 ) THEN |
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177 | to_be_resorted => e |
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178 | ELSE |
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179 | to_be_resorted => e_av |
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180 | ENDIF |
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181 | |
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182 | CASE ( 'lpt' ) |
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183 | IF ( av == 0 ) THEN |
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184 | to_be_resorted => pt |
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185 | ELSE |
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186 | to_be_resorted => lpt_av |
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187 | ENDIF |
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188 | |
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189 | CASE ( 'p' ) |
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190 | IF ( av == 0 ) THEN |
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191 | to_be_resorted => p |
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192 | ELSE |
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193 | to_be_resorted => p_av |
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194 | ENDIF |
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195 | |
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196 | CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange) |
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197 | IF ( av == 0 ) THEN |
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198 | tend = prt_count |
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199 | CALL exchange_horiz( tend, nbgp ) |
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200 | DO i = 1, mask_size_l(mid,1) |
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201 | DO j = 1, mask_size_l(mid,2) |
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202 | DO k = 1, mask_size_l(mid,3) |
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203 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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204 | mask_j(mid,j),mask_i(mid,i)) |
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205 | ENDDO |
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206 | ENDDO |
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207 | ENDDO |
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208 | resorted = .TRUE. |
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209 | ELSE |
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210 | CALL exchange_horiz( pc_av, nbgp ) |
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211 | to_be_resorted => pc_av |
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212 | ENDIF |
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213 | |
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214 | CASE ( 'pr' ) ! mean particle radius |
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215 | IF ( av == 0 ) THEN |
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216 | DO i = nxl, nxr |
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217 | DO j = nys, nyn |
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218 | DO k = nzb, nzt+1 |
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219 | psi = prt_start_index(k,j,i) |
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220 | s_r3 = 0.0 |
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221 | s_r4 = 0.0 |
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222 | DO n = psi, psi+prt_count(k,j,i)-1 |
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223 | s_r3 = s_r3 + particles(n)%radius**3 * & |
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224 | particles(n)%weight_factor |
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225 | s_r4 = s_r4 + particles(n)%radius**4 * & |
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226 | particles(n)%weight_factor |
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227 | ENDDO |
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228 | IF ( s_r3 /= 0.0 ) THEN |
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229 | mean_r = s_r4 / s_r3 |
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230 | ELSE |
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231 | mean_r = 0.0 |
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232 | ENDIF |
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233 | tend(k,j,i) = mean_r |
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234 | ENDDO |
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235 | ENDDO |
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236 | ENDDO |
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237 | CALL exchange_horiz( tend, nbgp ) |
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238 | DO i = 1, mask_size_l(mid,1) |
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239 | DO j = 1, mask_size_l(mid,2) |
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240 | DO k = 1, mask_size_l(mid,3) |
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241 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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242 | mask_j(mid,j),mask_i(mid,i)) |
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243 | ENDDO |
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244 | ENDDO |
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245 | ENDDO |
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246 | resorted = .TRUE. |
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247 | ELSE |
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248 | CALL exchange_horiz( pr_av, nbgp ) |
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249 | to_be_resorted => pr_av |
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250 | ENDIF |
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251 | |
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252 | CASE ( 'pt' ) |
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253 | IF ( av == 0 ) THEN |
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254 | IF ( .NOT. cloud_physics ) THEN |
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255 | to_be_resorted => pt |
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256 | ELSE |
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257 | DO i = 1, mask_size_l(mid,1) |
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258 | DO j = 1, mask_size_l(mid,2) |
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259 | DO k = 1, mask_size_l(mid,3) |
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260 | local_pf(i,j,k) = & |
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261 | pt(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) & |
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262 | + l_d_cp * pt_d_t(mask_k(mid,k)) * & |
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263 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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264 | ENDDO |
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265 | ENDDO |
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266 | ENDDO |
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267 | resorted = .TRUE. |
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268 | ENDIF |
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269 | ELSE |
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270 | to_be_resorted => pt_av |
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271 | ENDIF |
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272 | |
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273 | CASE ( 'q' ) |
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274 | IF ( av == 0 ) THEN |
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275 | to_be_resorted => q |
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276 | ELSE |
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277 | to_be_resorted => q_av |
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278 | ENDIF |
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279 | |
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280 | CASE ( 'ql' ) |
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281 | IF ( av == 0 ) THEN |
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282 | to_be_resorted => ql |
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283 | ELSE |
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284 | to_be_resorted => ql_av |
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285 | ENDIF |
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286 | |
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287 | CASE ( 'ql_c' ) |
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288 | IF ( av == 0 ) THEN |
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289 | to_be_resorted => ql_c |
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290 | ELSE |
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291 | to_be_resorted => ql_c_av |
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292 | ENDIF |
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293 | |
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294 | CASE ( 'ql_v' ) |
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295 | IF ( av == 0 ) THEN |
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296 | to_be_resorted => ql_v |
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297 | ELSE |
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298 | to_be_resorted => ql_v_av |
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299 | ENDIF |
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300 | |
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301 | CASE ( 'ql_vp' ) |
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302 | IF ( av == 0 ) THEN |
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303 | DO i = nxl, nxr |
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304 | DO j = nys, nyn |
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305 | DO k = nzb, nz_do3d |
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306 | psi = prt_start_index(k,j,i) |
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307 | DO n = psi, psi+prt_count(k,j,i)-1 |
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308 | tend(k,j,i) = tend(k,j,i) + & |
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309 | particles(n)%weight_factor / & |
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310 | prt_count(k,j,i) |
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311 | ENDDO |
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312 | ENDDO |
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313 | ENDDO |
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314 | ENDDO |
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315 | CALL exchange_horiz( tend, nbgp ) |
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316 | DO i = 1, mask_size_l(mid,1) |
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317 | DO j = 1, mask_size_l(mid,2) |
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318 | DO k = 1, mask_size_l(mid,3) |
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319 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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320 | mask_j(mid,j),mask_i(mid,i)) |
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321 | ENDDO |
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322 | ENDDO |
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323 | ENDDO |
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324 | resorted = .TRUE. |
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325 | ELSE |
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326 | CALL exchange_horiz( ql_vp_av, nbgp ) |
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327 | to_be_resorted => ql_vp_av |
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328 | ENDIF |
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329 | |
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330 | CASE ( 'qv' ) |
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331 | IF ( av == 0 ) THEN |
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332 | DO i = 1, mask_size_l(mid,1) |
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333 | DO j = 1, mask_size_l(mid,2) |
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334 | DO k = 1, mask_size_l(mid,3) |
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335 | local_pf(i,j,k) = & |
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336 | q(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) - & |
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337 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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338 | ENDDO |
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339 | ENDDO |
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340 | ENDDO |
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341 | resorted = .TRUE. |
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342 | ELSE |
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343 | to_be_resorted => qv_av |
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344 | ENDIF |
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345 | |
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346 | CASE ( 'rho' ) |
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347 | IF ( av == 0 ) THEN |
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348 | to_be_resorted => rho |
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349 | ELSE |
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350 | to_be_resorted => rho_av |
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351 | ENDIF |
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352 | |
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353 | CASE ( 's' ) |
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354 | IF ( av == 0 ) THEN |
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355 | to_be_resorted => q |
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356 | ELSE |
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357 | to_be_resorted => s_av |
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358 | ENDIF |
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359 | |
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360 | CASE ( 'sa' ) |
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361 | IF ( av == 0 ) THEN |
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362 | to_be_resorted => sa |
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363 | ELSE |
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364 | to_be_resorted => sa_av |
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365 | ENDIF |
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366 | |
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367 | CASE ( 'u' ) |
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368 | IF ( av == 0 ) THEN |
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369 | to_be_resorted => u |
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370 | ELSE |
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371 | to_be_resorted => u_av |
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372 | ENDIF |
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373 | |
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374 | CASE ( 'v' ) |
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375 | IF ( av == 0 ) THEN |
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376 | to_be_resorted => v |
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377 | ELSE |
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378 | to_be_resorted => v_av |
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379 | ENDIF |
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380 | |
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381 | CASE ( 'vpt' ) |
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382 | IF ( av == 0 ) THEN |
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383 | to_be_resorted => vpt |
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384 | ELSE |
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385 | to_be_resorted => vpt_av |
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386 | ENDIF |
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387 | |
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388 | CASE ( 'w' ) |
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389 | IF ( av == 0 ) THEN |
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390 | to_be_resorted => w |
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391 | ELSE |
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392 | to_be_resorted => w_av |
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393 | ENDIF |
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394 | |
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395 | CASE DEFAULT |
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396 | ! |
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397 | !-- User defined quantity |
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398 | CALL user_data_output_mask(av, domask(mid,av,if), found, local_pf ) |
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399 | resorted = .TRUE. |
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400 | |
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401 | IF ( .NOT. found ) THEN |
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402 | WRITE ( message_string, * ) 'no output available for: ', & |
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403 | TRIM( domask(mid,av,if) ) |
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404 | CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 ) |
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405 | ENDIF |
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406 | |
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407 | END SELECT |
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408 | |
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409 | ! |
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410 | !-- Resort the array to be output, if not done above |
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411 | IF ( .NOT. resorted ) THEN |
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412 | DO i = 1, mask_size_l(mid,1) |
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413 | DO j = 1, mask_size_l(mid,2) |
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414 | DO k = 1, mask_size_l(mid,3) |
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415 | local_pf(i,j,k) = to_be_resorted(mask_k(mid,k), & |
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416 | mask_j(mid,j),mask_i(mid,i)) |
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417 | ENDDO |
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418 | ENDDO |
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419 | ENDDO |
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420 | ENDIF |
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421 | |
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422 | ! |
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423 | !-- I/O block. I/O methods are implemented |
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424 | !-- (1) for parallel execution |
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425 | !-- a. with netCDF 4 parallel I/O-enabled library |
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426 | !-- b. with netCDF 3 library |
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427 | !-- (2) for serial execution. |
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428 | !-- The choice of method depends on the correct setting of preprocessor |
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429 | !-- directives __parallel and __netcdf4_parallel as well as on the parameter |
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430 | !-- netcdf_data_format. |
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431 | #if defined( __parallel ) |
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432 | #if defined( __netcdf4_parallel ) |
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433 | IF ( netcdf_data_format > 4 ) THEN |
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434 | ! |
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435 | !-- (1) a. Parallel I/O using netCDF 4 (not yet tested) |
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436 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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437 | id_var_domask(mid,av,if), & |
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438 | local_pf, & |
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439 | start = (/ mask_start_l(mid,1), mask_start_l(mid,2), & |
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440 | mask_start_l(mid,3), domask_time_count(mid,av) /), & |
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441 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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442 | mask_size_l(mid,3), 1 /) ) |
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443 | CALL handle_netcdf_error( 'data_output_mask', 461 ) |
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444 | ELSE |
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445 | #endif |
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446 | ! |
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447 | !-- (1) b. Conventional I/O only through PE0 |
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448 | !-- PE0 receives partial arrays from all processors of the respective mask |
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449 | !-- and outputs them. Here a barrier has to be set, because otherwise |
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450 | !-- "-MPI- FATAL: Remote protocol queue full" may occur. |
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451 | CALL MPI_BARRIER( comm2d, ierr ) |
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452 | |
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453 | ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3) |
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454 | IF ( myid == 0 ) THEN |
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455 | ! |
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456 | !-- Local array can be relocated directly. |
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457 | total_pf( & |
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458 | mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, & |
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459 | mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, & |
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460 | mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) & |
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461 | = local_pf |
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462 | ! |
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463 | !-- Receive data from all other PEs. |
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464 | DO n = 1, numprocs-1 |
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465 | ! |
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466 | !-- Receive index limits first, then array. |
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467 | !-- Index limits are received in arbitrary order from the PEs. |
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468 | CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, & |
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469 | comm2d, status, ierr ) |
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470 | ! |
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471 | !-- Not all PEs have data for the mask |
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472 | IF ( ind(1) /= -9999 ) THEN |
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473 | ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * & |
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474 | ( ind(6)-ind(5)+1 ) |
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475 | sender = status(MPI_SOURCE) |
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476 | DEALLOCATE( local_pf ) |
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477 | ALLOCATE(local_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6))) |
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478 | CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, & |
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479 | MPI_REAL, sender, 1, comm2d, status, ierr ) |
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480 | total_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)) & |
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481 | = local_pf |
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482 | ENDIF |
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483 | ENDDO |
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484 | |
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485 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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486 | id_var_domask(mid,av,if), total_pf, & |
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487 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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488 | count = (/ mask_size(mid,1), mask_size(mid,2), & |
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489 | mask_size(mid,3), 1 /) ) |
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490 | CALL handle_netcdf_error( 'data_output_mask', 462 ) |
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491 | |
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492 | ELSE |
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493 | ! |
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494 | !-- If at least part of the mask resides on the PE, send the index |
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495 | !-- limits for the target array, otherwise send -9999 to PE0. |
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496 | IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. & |
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497 | mask_size_l(mid,3) > 0 ) & |
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498 | THEN |
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499 | ind(1) = mask_start_l(mid,1) |
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500 | ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1 |
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501 | ind(3) = mask_start_l(mid,2) |
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502 | ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1 |
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503 | ind(5) = mask_start_l(mid,3) |
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504 | ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1 |
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505 | ELSE |
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506 | ind(1) = -9999; ind(2) = -9999 |
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507 | ind(3) = -9999; ind(4) = -9999 |
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508 | ind(5) = -9999; ind(6) = -9999 |
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509 | ENDIF |
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510 | CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr ) |
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511 | ! |
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512 | !-- If applicable, send data to PE0. |
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513 | IF ( ind(1) /= -9999 ) THEN |
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514 | CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, & |
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515 | ierr ) |
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516 | ENDIF |
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517 | ENDIF |
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518 | ! |
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519 | !-- A barrier has to be set, because otherwise some PEs may proceed too |
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520 | !-- fast so that PE0 may receive wrong data on tag 0. |
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521 | CALL MPI_BARRIER( comm2d, ierr ) |
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522 | #if defined( __netcdf4_parallel ) |
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523 | ENDIF |
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524 | #endif |
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525 | #else |
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526 | ! |
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527 | !-- (2) For serial execution of PALM, the single processor (PE0) holds all |
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528 | !-- data and writes them directly to file. |
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529 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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530 | id_var_domask(mid,av,if), & |
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531 | local_pf, & |
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532 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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533 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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534 | mask_size_l(mid,3), 1 /) ) |
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535 | CALL handle_netcdf_error( 'data_output_mask', 463 ) |
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536 | #endif |
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537 | |
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538 | if = if + 1 |
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539 | |
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540 | ENDDO |
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541 | |
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542 | ! |
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543 | !-- Deallocate temporary arrays. |
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544 | DEALLOCATE( local_pf ) |
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545 | #if defined( __parallel ) |
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546 | IF ( myid == 0 ) THEN |
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547 | DEALLOCATE( total_pf ) |
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548 | ENDIF |
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549 | #endif |
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550 | |
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551 | |
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552 | CALL cpu_log( log_point(49), 'data_output_mask', 'stop' ) |
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553 | #endif |
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554 | |
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555 | END SUBROUTINE data_output_mask |
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