| 1 | SUBROUTINE data_output_mask( av ) |
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| 2 | |
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| 3 | !------------------------------------------------------------------------------! |
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| 4 | ! Current revisions: |
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| 5 | ! ----------------- |
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| 6 | ! |
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| 7 | ! |
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| 8 | ! Former revisions: |
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| 9 | ! ----------------- |
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| 10 | ! $Id: data_output_mask.f90 1008 2012-09-19 14:49:14Z raasch $ |
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| 11 | ! |
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| 12 | ! 1007 2012-09-19 14:30:36Z franke |
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| 13 | ! Bugfix: calculation of pr must depend on the particle weighting factor, |
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| 14 | ! missing calculation of ql_vp added |
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| 15 | ! |
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| 16 | ! 771 2011-10-27 10:56:21Z heinze |
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| 17 | ! +lpt |
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| 18 | ! |
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| 19 | ! 667 2010-12-23 12:06:00Z suehring/gryschka |
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| 20 | ! Calls of exchange_horiz are modified. |
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| 21 | ! |
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| 22 | ! 564 2010-09-30 13:18:59Z helmke |
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| 23 | ! start number of mask output files changed to 201, netcdf message identifiers |
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| 24 | ! of masked output changed, palm message identifiers of masked output changed |
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| 25 | ! |
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| 26 | ! 493 2010-03-01 08:30:24Z raasch |
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| 27 | ! netcdf_format_mask* and format_parallel_io replaced by netcdf_data_format |
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| 28 | ! |
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| 29 | ! 475 2010-02-04 02:26:16Z raasch |
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| 30 | ! Bugfix in serial branch: arguments from array local_pf removed in N90_PUT_VAR |
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| 31 | ! |
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| 32 | ! 410 2009-12-04 17:05:40Z letzel |
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| 33 | ! Initial version |
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| 34 | ! |
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| 35 | ! Description: |
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| 36 | ! ------------ |
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| 37 | ! Masked data output in NetCDF format for current mask (current value of mid). |
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| 38 | !------------------------------------------------------------------------------! |
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| 39 | |
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| 40 | #if defined( __netcdf ) |
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| 41 | USE arrays_3d |
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| 42 | USE averaging |
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| 43 | USE cloud_parameters |
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| 44 | USE control_parameters |
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| 45 | USE cpulog |
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| 46 | USE grid_variables |
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| 47 | USE indices |
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| 48 | USE interfaces |
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| 49 | USE netcdf |
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| 50 | USE netcdf_control |
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| 51 | USE particle_attributes |
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| 52 | USE pegrid |
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| 53 | |
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| 54 | IMPLICIT NONE |
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| 55 | |
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| 56 | INTEGER :: av, ngp, file_id, i, if, is, j, k, l, n, psi, s, sender, & |
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| 57 | ind(6) |
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| 58 | LOGICAL :: found, resorted |
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| 59 | REAL :: mean_r, s_r3, s_r4 |
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| 60 | REAL, DIMENSION(:,:,:), ALLOCATABLE :: local_pf |
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| 61 | #if defined( __parallel ) |
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| 62 | REAL, DIMENSION(:,:,:), ALLOCATABLE :: total_pf |
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| 63 | #endif |
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| 64 | REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted |
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| 65 | |
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| 66 | ! |
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| 67 | !-- Return, if nothing to output |
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| 68 | IF ( domask_no(mid,av) == 0 ) RETURN |
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| 69 | |
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| 70 | CALL cpu_log (log_point(49),'data_output_mask','start') |
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| 71 | |
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| 72 | ! |
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| 73 | !-- Open output file. |
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| 74 | IF ( netcdf_output .AND. ( myid == 0 .OR. netcdf_data_format > 2 ) ) & |
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| 75 | THEN |
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| 76 | CALL check_open( 200+mid+av*max_masks ) |
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| 77 | ENDIF |
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| 78 | |
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| 79 | ! |
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| 80 | !-- Allocate total and local output arrays. |
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| 81 | #if defined( __parallel ) |
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| 82 | IF ( myid == 0 ) THEN |
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| 83 | ALLOCATE( total_pf(mask_size(mid,1),mask_size(mid,2),mask_size(mid,3)) ) |
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| 84 | ENDIF |
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| 85 | #endif |
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| 86 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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| 87 | mask_size_l(mid,3)) ) |
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| 88 | |
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| 89 | ! |
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| 90 | !-- Update the NetCDF time axis. |
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| 91 | domask_time_count(mid,av) = domask_time_count(mid,av) + 1 |
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| 92 | IF ( netcdf_output .AND. ( myid == 0 .OR. netcdf_data_format > 2 ) ) & |
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| 93 | THEN |
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| 94 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), & |
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| 95 | (/ simulated_time /), & |
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| 96 | start = (/ domask_time_count(mid,av) /), & |
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| 97 | count = (/ 1 /) ) |
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| 98 | CALL handle_netcdf_error( 'data_output_mask', 460 ) |
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| 99 | ENDIF |
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| 100 | |
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| 101 | ! |
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| 102 | !-- Loop over all variables to be written. |
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| 103 | if = 1 |
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| 104 | |
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| 105 | DO WHILE ( domask(mid,av,if)(1:1) /= ' ' ) |
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| 106 | ! |
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| 107 | !-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange |
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| 108 | IF ( netcdf_data_format < 3 .AND. myid == 0 .AND. if > 1 ) THEN |
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| 109 | DEALLOCATE( local_pf ) |
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| 110 | ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), & |
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| 111 | mask_size_l(mid,3)) ) |
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| 112 | ENDIF |
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| 113 | ! |
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| 114 | !-- Store the variable chosen. |
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| 115 | resorted = .FALSE. |
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| 116 | SELECT CASE ( TRIM( domask(mid,av,if) ) ) |
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| 117 | |
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| 118 | CASE ( 'e' ) |
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| 119 | IF ( av == 0 ) THEN |
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| 120 | to_be_resorted => e |
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| 121 | ELSE |
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| 122 | to_be_resorted => e_av |
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| 123 | ENDIF |
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| 124 | |
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| 125 | CASE ( 'lpt' ) |
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| 126 | IF ( av == 0 ) THEN |
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| 127 | to_be_resorted => pt |
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| 128 | ELSE |
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| 129 | to_be_resorted => lpt_av |
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| 130 | ENDIF |
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| 131 | |
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| 132 | CASE ( 'p' ) |
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| 133 | IF ( av == 0 ) THEN |
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| 134 | to_be_resorted => p |
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| 135 | ELSE |
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| 136 | to_be_resorted => p_av |
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| 137 | ENDIF |
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| 138 | |
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| 139 | CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange) |
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| 140 | IF ( av == 0 ) THEN |
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| 141 | tend = prt_count |
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| 142 | CALL exchange_horiz( tend, nbgp ) |
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| 143 | DO i = 1, mask_size_l(mid,1) |
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| 144 | DO j = 1, mask_size_l(mid,2) |
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| 145 | DO k = 1, mask_size_l(mid,3) |
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| 146 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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| 147 | mask_j(mid,j),mask_i(mid,i)) |
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| 148 | ENDDO |
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| 149 | ENDDO |
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| 150 | ENDDO |
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| 151 | resorted = .TRUE. |
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| 152 | ELSE |
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| 153 | CALL exchange_horiz( pc_av, nbgp ) |
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| 154 | to_be_resorted => pc_av |
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| 155 | ENDIF |
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| 156 | |
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| 157 | CASE ( 'pr' ) ! mean particle radius |
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| 158 | IF ( av == 0 ) THEN |
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| 159 | DO i = nxl, nxr |
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| 160 | DO j = nys, nyn |
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| 161 | DO k = nzb, nzt+1 |
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| 162 | psi = prt_start_index(k,j,i) |
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| 163 | s_r3 = 0.0 |
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| 164 | s_r4 = 0.0 |
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| 165 | DO n = psi, psi+prt_count(k,j,i)-1 |
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| 166 | s_r3 = s_r3 + particles(n)%radius**3 * & |
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| 167 | particles(n)%weight_factor |
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| 168 | s_r4 = s_r4 + particles(n)%radius**4 * & |
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| 169 | particles(n)%weight_factor |
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| 170 | ENDDO |
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| 171 | IF ( s_r3 /= 0.0 ) THEN |
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| 172 | mean_r = s_r4 / s_r3 |
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| 173 | ELSE |
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| 174 | mean_r = 0.0 |
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| 175 | ENDIF |
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| 176 | tend(k,j,i) = mean_r |
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| 177 | ENDDO |
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| 178 | ENDDO |
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| 179 | ENDDO |
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| 180 | CALL exchange_horiz( tend, nbgp ) |
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| 181 | DO i = 1, mask_size_l(mid,1) |
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| 182 | DO j = 1, mask_size_l(mid,2) |
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| 183 | DO k = 1, mask_size_l(mid,3) |
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| 184 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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| 185 | mask_j(mid,j),mask_i(mid,i)) |
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| 186 | ENDDO |
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| 187 | ENDDO |
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| 188 | ENDDO |
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| 189 | resorted = .TRUE. |
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| 190 | ELSE |
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| 191 | CALL exchange_horiz( pr_av, nbgp ) |
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| 192 | to_be_resorted => pr_av |
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| 193 | ENDIF |
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| 194 | |
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| 195 | CASE ( 'pt' ) |
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| 196 | IF ( av == 0 ) THEN |
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| 197 | IF ( .NOT. cloud_physics ) THEN |
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| 198 | to_be_resorted => pt |
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| 199 | ELSE |
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| 200 | DO i = 1, mask_size_l(mid,1) |
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| 201 | DO j = 1, mask_size_l(mid,2) |
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| 202 | DO k = 1, mask_size_l(mid,3) |
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| 203 | local_pf(i,j,k) = & |
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| 204 | pt(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) & |
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| 205 | + l_d_cp * pt_d_t(mask_k(mid,k)) * & |
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| 206 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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| 207 | ENDDO |
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| 208 | ENDDO |
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| 209 | ENDDO |
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| 210 | resorted = .TRUE. |
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| 211 | ENDIF |
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| 212 | ELSE |
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| 213 | to_be_resorted => pt_av |
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| 214 | ENDIF |
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| 215 | |
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| 216 | CASE ( 'q' ) |
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| 217 | IF ( av == 0 ) THEN |
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| 218 | to_be_resorted => q |
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| 219 | ELSE |
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| 220 | to_be_resorted => q_av |
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| 221 | ENDIF |
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| 222 | |
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| 223 | CASE ( 'ql' ) |
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| 224 | IF ( av == 0 ) THEN |
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| 225 | to_be_resorted => ql |
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| 226 | ELSE |
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| 227 | to_be_resorted => ql_av |
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| 228 | ENDIF |
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| 229 | |
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| 230 | CASE ( 'ql_c' ) |
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| 231 | IF ( av == 0 ) THEN |
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| 232 | to_be_resorted => ql_c |
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| 233 | ELSE |
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| 234 | to_be_resorted => ql_c_av |
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| 235 | ENDIF |
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| 236 | |
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| 237 | CASE ( 'ql_v' ) |
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| 238 | IF ( av == 0 ) THEN |
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| 239 | to_be_resorted => ql_v |
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| 240 | ELSE |
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| 241 | to_be_resorted => ql_v_av |
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| 242 | ENDIF |
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| 243 | |
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| 244 | CASE ( 'ql_vp' ) |
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| 245 | IF ( av == 0 ) THEN |
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| 246 | DO i = nxl, nxr |
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| 247 | DO j = nys, nyn |
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| 248 | DO k = nzb, nz_do3d |
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| 249 | psi = prt_start_index(k,j,i) |
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| 250 | DO n = psi, psi+prt_count(k,j,i)-1 |
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| 251 | tend(k,j,i) = tend(k,j,i) + & |
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| 252 | particles(n)%weight_factor / & |
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| 253 | prt_count(k,j,i) |
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| 254 | ENDDO |
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| 255 | ENDDO |
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| 256 | ENDDO |
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| 257 | ENDDO |
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| 258 | CALL exchange_horiz( tend, nbgp ) |
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| 259 | DO i = 1, mask_size_l(mid,1) |
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| 260 | DO j = 1, mask_size_l(mid,2) |
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| 261 | DO k = 1, mask_size_l(mid,3) |
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| 262 | local_pf(i,j,k) = tend(mask_k(mid,k), & |
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| 263 | mask_j(mid,j),mask_i(mid,i)) |
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| 264 | ENDDO |
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| 265 | ENDDO |
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| 266 | ENDDO |
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| 267 | resorted = .TRUE. |
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| 268 | ELSE |
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| 269 | CALL exchange_horiz( ql_vp_av, nbgp ) |
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| 270 | to_be_resorted => ql_vp_av |
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| 271 | ENDIF |
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| 272 | |
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| 273 | CASE ( 'qv' ) |
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| 274 | IF ( av == 0 ) THEN |
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| 275 | DO i = 1, mask_size_l(mid,1) |
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| 276 | DO j = 1, mask_size_l(mid,2) |
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| 277 | DO k = 1, mask_size_l(mid,3) |
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| 278 | local_pf(i,j,k) = & |
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| 279 | q(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) - & |
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| 280 | ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) |
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| 281 | ENDDO |
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| 282 | ENDDO |
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| 283 | ENDDO |
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| 284 | resorted = .TRUE. |
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| 285 | ELSE |
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| 286 | to_be_resorted => qv_av |
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| 287 | ENDIF |
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| 288 | |
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| 289 | CASE ( 'rho' ) |
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| 290 | IF ( av == 0 ) THEN |
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| 291 | to_be_resorted => rho |
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| 292 | ELSE |
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| 293 | to_be_resorted => rho_av |
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| 294 | ENDIF |
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| 295 | |
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| 296 | CASE ( 's' ) |
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| 297 | IF ( av == 0 ) THEN |
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| 298 | to_be_resorted => q |
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| 299 | ELSE |
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| 300 | to_be_resorted => s_av |
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| 301 | ENDIF |
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| 302 | |
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| 303 | CASE ( 'sa' ) |
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| 304 | IF ( av == 0 ) THEN |
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| 305 | to_be_resorted => sa |
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| 306 | ELSE |
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| 307 | to_be_resorted => sa_av |
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| 308 | ENDIF |
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| 309 | |
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| 310 | CASE ( 'u' ) |
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| 311 | IF ( av == 0 ) THEN |
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| 312 | to_be_resorted => u |
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| 313 | ELSE |
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| 314 | to_be_resorted => u_av |
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| 315 | ENDIF |
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| 316 | |
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| 317 | CASE ( 'v' ) |
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| 318 | IF ( av == 0 ) THEN |
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| 319 | to_be_resorted => v |
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| 320 | ELSE |
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| 321 | to_be_resorted => v_av |
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| 322 | ENDIF |
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| 323 | |
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| 324 | CASE ( 'vpt' ) |
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| 325 | IF ( av == 0 ) THEN |
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| 326 | to_be_resorted => vpt |
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| 327 | ELSE |
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| 328 | to_be_resorted => vpt_av |
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| 329 | ENDIF |
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| 330 | |
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| 331 | CASE ( 'w' ) |
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| 332 | IF ( av == 0 ) THEN |
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| 333 | to_be_resorted => w |
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| 334 | ELSE |
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| 335 | to_be_resorted => w_av |
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| 336 | ENDIF |
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| 337 | |
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| 338 | CASE DEFAULT |
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| 339 | ! |
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| 340 | !-- User defined quantity |
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| 341 | CALL user_data_output_mask(av, domask(mid,av,if), found, local_pf ) |
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| 342 | resorted = .TRUE. |
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| 343 | |
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| 344 | IF ( .NOT. found ) THEN |
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| 345 | WRITE ( message_string, * ) 'no output available for: ', & |
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| 346 | TRIM( domask(mid,av,if) ) |
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| 347 | CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 ) |
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| 348 | ENDIF |
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| 349 | |
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| 350 | END SELECT |
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| 351 | |
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| 352 | ! |
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| 353 | !-- Resort the array to be output, if not done above |
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| 354 | IF ( .NOT. resorted ) THEN |
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| 355 | DO i = 1, mask_size_l(mid,1) |
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| 356 | DO j = 1, mask_size_l(mid,2) |
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| 357 | DO k = 1, mask_size_l(mid,3) |
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| 358 | local_pf(i,j,k) = to_be_resorted(mask_k(mid,k), & |
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| 359 | mask_j(mid,j),mask_i(mid,i)) |
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| 360 | ENDDO |
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| 361 | ENDDO |
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| 362 | ENDDO |
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| 363 | ENDIF |
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| 364 | |
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| 365 | ! |
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| 366 | !-- I/O block. I/O methods are implemented |
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| 367 | !-- (1) for parallel execution |
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| 368 | !-- a. with NetCDF 4 parallel I/O-enabled library |
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| 369 | !-- b. with NetCDF 3 library |
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| 370 | !-- (2) for serial execution. |
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| 371 | !-- The choice of method depends on the correct setting of preprocessor |
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| 372 | !-- directives __parallel and __netcdf4 as well as on the parameter |
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| 373 | !-- netcdf_data_format. |
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| 374 | #if defined( __parallel ) |
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| 375 | #if defined( __netcdf4 ) |
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| 376 | IF ( netcdf_data_format > 2 ) THEN |
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| 377 | ! |
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| 378 | !-- (1) a. Parallel I/O using NetCDF 4 (not yet tested) |
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| 379 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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| 380 | id_var_domask(mid,av,if), & |
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| 381 | local_pf, & |
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| 382 | start = (/ mask_start_l(mid,1), mask_start_l(mid,2), & |
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| 383 | mask_start_l(mid,3), domask_time_count(mid,av) /), & |
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| 384 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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| 385 | mask_size_l(mid,3), 1 /) ) |
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| 386 | CALL handle_netcdf_error( 'data_output_mask', 461 ) |
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| 387 | ELSE |
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| 388 | #endif |
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| 389 | ! |
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| 390 | !-- (1) b. Conventional I/O only through PE0 |
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| 391 | !-- PE0 receives partial arrays from all processors of the respective mask |
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| 392 | !-- and outputs them. Here a barrier has to be set, because otherwise |
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| 393 | !-- "-MPI- FATAL: Remote protocol queue full" may occur. |
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| 394 | CALL MPI_BARRIER( comm2d, ierr ) |
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| 395 | |
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| 396 | ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3) |
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| 397 | IF ( myid == 0 ) THEN |
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| 398 | ! |
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| 399 | !-- Local array can be relocated directly. |
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| 400 | total_pf( & |
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| 401 | mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, & |
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| 402 | mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, & |
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| 403 | mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) & |
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| 404 | = local_pf |
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| 405 | ! |
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| 406 | !-- Receive data from all other PEs. |
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| 407 | DO n = 1, numprocs-1 |
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| 408 | ! |
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| 409 | !-- Receive index limits first, then array. |
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| 410 | !-- Index limits are received in arbitrary order from the PEs. |
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| 411 | CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, & |
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| 412 | comm2d, status, ierr ) |
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| 413 | ! |
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| 414 | !-- Not all PEs have data for the mask |
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| 415 | IF ( ind(1) /= -9999 ) THEN |
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| 416 | ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * & |
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| 417 | ( ind(6)-ind(5)+1 ) |
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| 418 | sender = status(MPI_SOURCE) |
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| 419 | DEALLOCATE( local_pf ) |
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| 420 | ALLOCATE(local_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6))) |
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| 421 | CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, & |
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| 422 | MPI_REAL, sender, 1, comm2d, status, ierr ) |
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| 423 | total_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)) & |
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| 424 | = local_pf |
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| 425 | ENDIF |
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| 426 | ENDDO |
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| 427 | |
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| 428 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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| 429 | id_var_domask(mid,av,if), total_pf, & |
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| 430 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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| 431 | count = (/ mask_size(mid,1), mask_size(mid,2), & |
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| 432 | mask_size(mid,3), 1 /) ) |
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| 433 | CALL handle_netcdf_error( 'data_output_mask', 462 ) |
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| 434 | |
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| 435 | ELSE |
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| 436 | ! |
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| 437 | !-- If at least part of the mask resides on the PE, send the index |
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| 438 | !-- limits for the target array, otherwise send -9999 to PE0. |
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| 439 | IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. & |
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| 440 | mask_size_l(mid,3) > 0 ) & |
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| 441 | THEN |
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| 442 | ind(1) = mask_start_l(mid,1) |
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| 443 | ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1 |
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| 444 | ind(3) = mask_start_l(mid,2) |
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| 445 | ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1 |
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| 446 | ind(5) = mask_start_l(mid,3) |
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| 447 | ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1 |
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| 448 | ELSE |
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| 449 | ind(1) = -9999; ind(2) = -9999 |
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| 450 | ind(3) = -9999; ind(4) = -9999 |
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| 451 | ind(5) = -9999; ind(6) = -9999 |
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| 452 | ENDIF |
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| 453 | CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr ) |
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| 454 | ! |
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| 455 | !-- If applicable, send data to PE0. |
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| 456 | IF ( ind(1) /= -9999 ) THEN |
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| 457 | CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, & |
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| 458 | ierr ) |
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| 459 | ENDIF |
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| 460 | ENDIF |
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| 461 | ! |
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| 462 | !-- A barrier has to be set, because otherwise some PEs may proceed too |
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| 463 | !-- fast so that PE0 may receive wrong data on tag 0. |
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| 464 | CALL MPI_BARRIER( comm2d, ierr ) |
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| 465 | #if defined( __netcdf4 ) |
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| 466 | ENDIF |
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| 467 | #endif |
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| 468 | #else |
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| 469 | ! |
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| 470 | !-- (2) For serial execution of PALM, the single processor (PE0) holds all |
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| 471 | !-- data and writes them directly to file. |
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| 472 | nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), & |
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| 473 | id_var_domask(mid,av,if), & |
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| 474 | local_pf, & |
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| 475 | start = (/ 1, 1, 1, domask_time_count(mid,av) /), & |
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| 476 | count = (/ mask_size_l(mid,1), mask_size_l(mid,2), & |
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| 477 | mask_size_l(mid,3), 1 /) ) |
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| 478 | CALL handle_netcdf_error( 'data_output_mask', 463 ) |
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| 479 | #endif |
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| 480 | |
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| 481 | if = if + 1 |
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| 482 | |
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| 483 | ENDDO |
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| 484 | |
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| 485 | ! |
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| 486 | !-- Deallocate temporary arrays. |
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| 487 | DEALLOCATE( local_pf ) |
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| 488 | #if defined( __parallel ) |
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| 489 | IF ( myid == 0 ) THEN |
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| 490 | DEALLOCATE( total_pf ) |
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| 491 | ENDIF |
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| 492 | #endif |
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| 493 | |
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| 494 | |
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| 495 | CALL cpu_log (log_point(49),'data_output_mask','stop','nobarrier') |
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| 496 | #endif |
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| 497 | |
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| 498 | END SUBROUTINE data_output_mask |
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