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source: palm/trunk/SOURCE/data_output_mask.f90 @ 3557

Last change on this file since 3557 was 3554, checked in by gronemeier, 6 years ago
renamed variable if to ivar; add variable description
Property svn:keywords set to `Id`
File size: 32.3 KB

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[3298]	1	!> @file data_output_mask.f90
	2	!------------------------------------------------------------------------------!
	3	! This file is part of the PALM model system.
	4	!
	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
	18	!------------------------------------------------------------------------------!
	19	!
	20	! Current revisions:
	21	! -----------------
[2032]	22	!
	23	!
[3298]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_mask.f90 3554 2018-11-22 11:24:52Z eckhard $
[3554]	27	! add variable description
	28	!
	29	! 3467 2018-10-30 19:05:21Z suehring
[3467]	30	! Implementation of a new aerosol module salsa.
	31	!
	32	! 3435 2018-10-26 18:25:44Z gronemeier
[3435]	33	! Add terrain-following output
	34	!
	35	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	36	! Renamed output variables
	37	!
	38	! 3419 2018-10-24 17:27:31Z gronemeier
[3298]	39	! Minor formatting (kanani)
	40	! Call for chem_data_output_mask added (basit)
	41	!
	42	! 3274 2018-09-24 15:42:55Z knoop
	43	! Modularization of all bulk cloud physics code components
	44	!
[3274]	45	! 3241 2018-09-12 15:02:00Z raasch
[3298]	46	! unused variable removed
	47	!
	48	! 3083 2018-06-19 14:03:12Z gronemeier
	49	!
	50	!
	51	! 3045 2018-05-28 07:55:41Z Giersch
	52	! Error messages revised
	53	!
	54	! 3030 2018-05-23 14:37:00Z raasch
	55	! variable if renamed ivar
	56	!
	57	! 2718 2018-01-02 08:49:38Z maronga
	58	! Corrected "Former revisions" section
	59	!
	60	! 2696 2017-12-14 17:12:51Z kanani
	61	! Change in file header (GPL part)
	62	!
	63	! 2292 2017-06-20 09:51:42Z schwenkel
	64	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	65	! includes two more prognostic equations for cloud drop concentration (nc)
	66	! and cloud water content (qc).
	67	!
	68	! 2101 2017-01-05 16:42:31Z suehring
	69	!
	70	! 2031 2016-10-21 15:11:58Z knoop
	71	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	72	!
	73	! 2000 2016-08-20 18:09:15Z knoop
	74	! Forced header and separation lines into 80 columns
	75	!
	76	! 1980 2016-07-29 15:51:57Z suehring
	77	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	78	! to .F.
	79	!
	80	! 1976 2016-07-27 13:28:04Z maronga
	81	! Output of radiation quantities is now done directly in the respective module
	82	!
	83	! 1960 2016-07-12 16:34:24Z suehring
	84	! Separate humidity and passive scalar
	85	!
	86	! 2016-03-06 18:36:17Z raasch
	87	! name change of netcdf routines and module + related changes,
	88	! switch back of netcdf data format moved from time integration routine to here
	89	!
	90	! 1691 2015-10-26 16:17:44Z maronga
	91	! Added output of radiative heating rates for RRTMG
	92	!
	93	! 1682 2015-10-07 23:56:08Z knoop
	94	! Code annotations made doxygen readable
	95	!
	96	! 1585 2015-04-30 07:05:52Z maronga
	97	! Added support for RRTMG
	98	!
	99	! 1438 2014-07-22 14:14:06Z heinze
	100	! +nr, qc, qr
	101	!
	102	! 1359 2014-04-11 17:15:14Z hoffmann
	103	! New particle structure integrated.
	104	!
	105	! 1353 2014-04-08 15:21:23Z heinze
	106	! REAL constants provided with KIND-attribute
	107	!
	108	! 1327 2014-03-21 11:00:16Z raasch
	109	!
	110	!
	111	! 1320 2014-03-20 08:40:49Z raasch
	112	! ONLY-attribute added to USE-statements,
	113	! kind-parameters added to all INTEGER and REAL declaration statements,
	114	! kinds are defined in new module kinds,
	115	! revision history before 2012 removed,
	116	! comment fields (!:) to be used for variable explanations added to
	117	! all variable declaration statements
	118	!
	119	! 1318 2014-03-17 13:35:16Z raasch
	120	! barrier argument removed from cpu_log,
	121	! module interfaces removed
	122	!
	123	! 1092 2013-02-02 11:24:22Z raasch
	124	! unused variables removed
	125	!
	126	! 1036 2012-10-22 13:43:42Z raasch
	127	! code put under GPL (PALM 3.9)
	128	!
	129	! 1031 2012-10-19 14:35:30Z raasch
	130	! netCDF4 without parallel file support implemented
	131	!
	132	! 1007 2012-09-19 14:30:36Z franke
	133	! Bugfix: calculation of pr must depend on the particle weighting factor,
	134	! missing calculation of ql_vp added
	135	!
	136	! 410 2009-12-04 17:05:40Z letzel
	137	! Initial version
	138	!
	139	! Description:
	140	! ------------
	141	!> Masked data output in netCDF format for current mask (current value of mid).
	142	!------------------------------------------------------------------------------!
	143	SUBROUTINE data_output_mask( av )
	144
	145
	146
	147	#if defined( __netcdf )
	148	USE arrays_3d, &
	149	ONLY: e, nc, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, &
	150	tend, u, v, vpt, w, d_exner
	151
	152	USE averaging, &
	153	ONLY: e_av, lpt_av, nc_av, nr_av, p_av, pc_av, pr_av, pt_av, q_av, &
	154	qc_av, ql_av, ql_c_av, ql_v_av, ql_vp_av, qv_av, qr_av, &
	155	rho_ocean_av, s_av, sa_av, u_av, v_av, vpt_av, w_av
	156
	157	USE basic_constants_and_equations_mod, &
	158	ONLY: lv_d_cp
	159
	160	USE chemistry_model_mod, &
	161	ONLY: chem_data_output_mask
	162
	163	USE control_parameters, &
	164	ONLY: air_chemistry, domask, domask_no, domask_time_count, mask_i, &
	165	mask_j, mask_k, mask_size, mask_size_l, mask_start_l, &
[3435]	166	mask_surface, &
[3298]	167	max_masks, message_string, mid, nz_do3d, simulated_time
	168	USE cpulog, &
	169	ONLY: cpu_log, log_point
	170
	171	USE indices, &
[3435]	172	ONLY: nbgp, nxl, nxr, nyn, nys, nzb, nzt
[3298]	173
	174	USE kinds
	175
	176	USE bulk_cloud_model_mod, &
	177	ONLY: bulk_cloud_model
	178
	179	USE NETCDF
	180
	181	USE netcdf_interface, &
	182	ONLY: id_set_mask, id_var_domask, id_var_time_mask, nc_stat, &
	183	netcdf_data_format, netcdf_handle_error
	184
	185	USE particle_attributes, &
	186	ONLY: grid_particles, number_of_particles, particles, &
	187	particle_advection_start, prt_count
	188
	189	USE pegrid
	190
	191	USE radiation_model_mod, &
	192	ONLY: radiation, radiation_data_output_mask
	193
[3467]	194	USE salsa_mod, &
	195	ONLY: salsa, salsa_data_output_mask
	196
[3435]	197	USE surface_mod, &
[3467]	198	ONLY : surf_def_h, surf_lsm_h, surf_usm_h, get_topography_top_index_ji
[3435]	199
[3298]	200	IMPLICIT NONE
	201
[3435]	202	CHARACTER(LEN=5) :: grid !< flag to distinquish between staggered grids
	203
[3554]	204	INTEGER(iwp) :: av !< flag for (non-)average output
	205	INTEGER(iwp) :: ngp !< number of grid points of an output slice
	206	INTEGER(iwp) :: i !< loop index
	207	INTEGER(iwp) :: ivar !< variable index
	208	INTEGER(iwp) :: j !< loop index
	209	INTEGER(iwp) :: k !< loop index
	210	INTEGER(iwp) :: kk !< vertical index
	211	INTEGER(iwp) :: n !< loop index
	212	INTEGER(iwp) :: netcdf_data_format_save !< value of netcdf_data_format
	213	INTEGER(iwp) :: sender !< PE id of sending PE
[3435]	214	INTEGER(iwp) :: topo_top_ind !< k index of highest horizontal surface
[3554]	215	INTEGER(iwp) :: ind(6) !< index limits (lower/upper bounds) of array 'local_2d'
[3435]	216
[3554]	217	LOGICAL :: found !< true if output variable was found
	218	LOGICAL :: resorted !< true if variable is resorted
[3435]	219
[3554]	220	REAL(wp) :: mean_r !< mean particle radius
	221	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	222	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[3298]	223
[3554]	224	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[3298]	225	#if defined( __parallel )
[3554]	226	REAL(wp), DIMENSION(:,:,:), ALLOCATABLE :: total_pf !< collected output array
[3298]	227	#endif
[3554]	228	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< points to array which shall be output
[3298]	229
	230	!
	231	!-- Return, if nothing to output
	232	IF ( domask_no(mid,av) == 0 ) RETURN
	233
	234	CALL cpu_log (log_point(49),'data_output_mask','start')
	235
	236	!
	237	!-- Parallel netcdf output is not tested so far for masked data, hence
	238	!-- netcdf_data_format is switched back to non-paralell output.
	239	netcdf_data_format_save = netcdf_data_format
	240	IF ( netcdf_data_format == 5 ) netcdf_data_format = 3
	241	IF ( netcdf_data_format == 6 ) netcdf_data_format = 4
	242
	243	!
	244	!-- Open output file.
	245	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
	246	CALL check_open( 200+mid+av*max_masks )
	247	ENDIF
	248
	249	!
	250	!-- Allocate total and local output arrays.
	251	#if defined( __parallel )
	252	IF ( myid == 0 ) THEN
	253	ALLOCATE( total_pf(mask_size(mid,1),mask_size(mid,2),mask_size(mid,3)) )
	254	ENDIF
	255	#endif
	256	ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), &
	257	mask_size_l(mid,3)) )
	258
	259	!
	260	!-- Update the netCDF time axis.
	261	domask_time_count(mid,av) = domask_time_count(mid,av) + 1
	262	IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN
	263	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), id_var_time_mask(mid,av), &
	264	(/ simulated_time /), &
	265	start = (/ domask_time_count(mid,av) /), &
	266	count = (/ 1 /) )
	267	CALL netcdf_handle_error( 'data_output_mask', 460 )
	268	ENDIF
	269
	270	!
	271	!-- Loop over all variables to be written.
	272	ivar = 1
	273
	274	DO WHILE ( domask(mid,av,ivar)(1:1) /= ' ' )
	275	!
	276	!-- Reallocate local_pf on PE 0 since its shape changes during MPI exchange
	277	IF ( netcdf_data_format < 5 .AND. myid == 0 .AND. ivar > 1 ) THEN
	278	DEALLOCATE( local_pf )
	279	ALLOCATE( local_pf(mask_size_l(mid,1),mask_size_l(mid,2), &
	280	mask_size_l(mid,3)) )
	281	ENDIF
	282	!
[3435]	283	!-- Set default grid for terrain-following output
	284	grid = 's'
	285	!
[3298]	286	!-- Set flag to steer output of radiation, land-surface, or user-defined
	287	!-- quantities
	288	found = .FALSE.
	289	!
	290	!-- Store the variable chosen.
	291	resorted = .FALSE.
	292	SELECT CASE ( TRIM( domask(mid,av,ivar) ) )
	293
	294	CASE ( 'e' )
	295	IF ( av == 0 ) THEN
	296	to_be_resorted => e
	297	ELSE
	298	to_be_resorted => e_av
	299	ENDIF
	300
[3421]	301	CASE ( 'thetal' )
[3298]	302	IF ( av == 0 ) THEN
	303	to_be_resorted => pt
	304	ELSE
	305	to_be_resorted => lpt_av
	306	ENDIF
	307
	308	CASE ( 'nc' )
	309	IF ( av == 0 ) THEN
	310	to_be_resorted => nc
	311	ELSE
	312	to_be_resorted => nc_av
	313	ENDIF
	314
	315	CASE ( 'nr' )
	316	IF ( av == 0 ) THEN
	317	to_be_resorted => nr
	318	ELSE
	319	to_be_resorted => nr_av
	320	ENDIF
	321
	322	CASE ( 'p' )
	323	IF ( av == 0 ) THEN
	324	to_be_resorted => p
	325	ELSE
	326	to_be_resorted => p_av
	327	ENDIF
	328
	329	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	330	IF ( av == 0 ) THEN
	331	tend = prt_count
	332	CALL exchange_horiz( tend, nbgp )
[3435]	333	IF ( .NOT. mask_surface(mid) ) THEN
	334	DO i = 1, mask_size_l(mid,1)
	335	DO j = 1, mask_size_l(mid,2)
	336	DO k = 1, mask_size_l(mid,3)
	337	local_pf(i,j,k) = tend(mask_k(mid,k), &
	338	mask_j(mid,j),mask_i(mid,i))
	339	ENDDO
[3298]	340	ENDDO
	341	ENDDO
[3435]	342	ELSE
	343	!
	344	!-- Terrain-following masked output
	345	DO i = 1, mask_size_l(mid,1)
	346	DO j = 1, mask_size_l(mid,2)
	347	!
	348	!-- Get k index of highest horizontal surface
	349	topo_top_ind = &
	350	get_topography_top_index_ji( mask_j(mid,j), &
	351	mask_i(mid,i), &
	352	grid )
	353	DO k = 1, mask_size_l(mid,3)
	354	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
	355	local_pf(i,j,k) = &
	356	tend(kk,mask_j(mid,j),mask_i(mid,i))
	357	ENDDO
	358	ENDDO
	359	ENDDO
	360	ENDIF
[3298]	361	resorted = .TRUE.
	362	ELSE
	363	CALL exchange_horiz( pc_av, nbgp )
	364	to_be_resorted => pc_av
	365	ENDIF
	366
	367	CASE ( 'pr' ) ! mean particle radius (effective radius)
	368	IF ( av == 0 ) THEN
	369	IF ( simulated_time >= particle_advection_start ) THEN
	370	DO i = nxl, nxr
	371	DO j = nys, nyn
	372	DO k = nzb, nz_do3d
	373	number_of_particles = prt_count(k,j,i)
	374	IF (number_of_particles <= 0) CYCLE
	375	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	376	s_r2 = 0.0_wp
	377	s_r3 = 0.0_wp
	378	DO n = 1, number_of_particles
	379	IF ( particles(n)%particle_mask ) THEN
	380	s_r2 = s_r2 + grid_particles(k,j,i)%particles(n)%radius*2 &
	381	grid_particles(k,j,i)%particles(n)%weight_factor
	382	s_r3 = s_r3 + grid_particles(k,j,i)%particles(n)%radius*3 &
	383	grid_particles(k,j,i)%particles(n)%weight_factor
	384	ENDIF
	385	ENDDO
	386	IF ( s_r2 > 0.0_wp ) THEN
	387	mean_r = s_r3 / s_r2
	388	ELSE
	389	mean_r = 0.0_wp
	390	ENDIF
	391	tend(k,j,i) = mean_r
	392	ENDDO
	393	ENDDO
	394	ENDDO
	395	CALL exchange_horiz( tend, nbgp )
	396	ELSE
	397	tend = 0.0_wp
	398	ENDIF
[3435]	399	IF ( .NOT. mask_surface(mid) ) THEN
	400	DO i = 1, mask_size_l(mid,1)
	401	DO j = 1, mask_size_l(mid,2)
	402	DO k = 1, mask_size_l(mid,3)
	403	local_pf(i,j,k) = tend(mask_k(mid,k), &
	404	mask_j(mid,j),mask_i(mid,i))
	405	ENDDO
[3298]	406	ENDDO
	407	ENDDO
[3435]	408	ELSE
	409	!
	410	!-- Terrain-following masked output
	411	DO i = 1, mask_size_l(mid,1)
	412	DO j = 1, mask_size_l(mid,2)
	413	!
	414	!-- Get k index of highest horizontal surface
	415	topo_top_ind = &
	416	get_topography_top_index_ji( mask_j(mid,j), &
	417	mask_i(mid,i), &
	418	grid )
	419	DO k = 1, mask_size_l(mid,3)
	420	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
	421	local_pf(i,j,k) = &
	422	tend(kk,mask_j(mid,j),mask_i(mid,i))
	423	ENDDO
	424	ENDDO
	425	ENDDO
	426	ENDIF
[3298]	427	resorted = .TRUE.
	428	ELSE
	429	CALL exchange_horiz( pr_av, nbgp )
	430	to_be_resorted => pr_av
	431	ENDIF
	432
[3421]	433	CASE ( 'theta' )
[3298]	434	IF ( av == 0 ) THEN
	435	IF ( .NOT. bulk_cloud_model ) THEN
	436	to_be_resorted => pt
	437	ELSE
[3435]	438	IF ( .NOT. mask_surface(mid) ) THEN
	439	DO i = 1, mask_size_l(mid,1)
	440	DO j = 1, mask_size_l(mid,2)
	441	DO k = 1, mask_size_l(mid,3)
	442	local_pf(i,j,k) = &
	443	pt(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) &
	444	+ lv_d_cp * d_exner(mask_k(mid,k)) * &
	445	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i))
	446	ENDDO
[3298]	447	ENDDO
	448	ENDDO
[3435]	449	ELSE
	450	!
	451	!-- Terrain-following masked output
	452	DO i = 1, mask_size_l(mid,1)
	453	DO j = 1, mask_size_l(mid,2)
	454	!
	455	!-- Get k index of highest horizontal surface
	456	topo_top_ind = &
	457	get_topography_top_index_ji( mask_j(mid,j), &
	458	mask_i(mid,i), &
	459	grid )
	460	DO k = 1, mask_size_l(mid,3)
	461	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
	462	local_pf(i,j,k) = &
	463	pt(kk,mask_j(mid,j),mask_i(mid,i) ) &
	464	+ lv_d_cp * d_exner(kk) * &
	465	ql(kk,mask_j(mid,j),mask_i(mid,i))
	466	ENDDO
	467	ENDDO
	468	ENDDO
	469	ENDIF
[3298]	470	resorted = .TRUE.
	471	ENDIF
	472	ELSE
	473	to_be_resorted => pt_av
	474	ENDIF
	475
	476	CASE ( 'q' )
	477	IF ( av == 0 ) THEN
	478	to_be_resorted => q
	479	ELSE
	480	to_be_resorted => q_av
	481	ENDIF
	482
	483	CASE ( 'qc' )
	484	IF ( av == 0 ) THEN
	485	to_be_resorted => qc
	486	ELSE
	487	to_be_resorted => qc_av
	488	ENDIF
	489
	490	CASE ( 'ql' )
	491	IF ( av == 0 ) THEN
	492	to_be_resorted => ql
	493	ELSE
	494	to_be_resorted => ql_av
	495	ENDIF
	496
	497	CASE ( 'ql_c' )
	498	IF ( av == 0 ) THEN
	499	to_be_resorted => ql_c
	500	ELSE
	501	to_be_resorted => ql_c_av
	502	ENDIF
	503
	504	CASE ( 'ql_v' )
	505	IF ( av == 0 ) THEN
	506	to_be_resorted => ql_v
	507	ELSE
	508	to_be_resorted => ql_v_av
	509	ENDIF
	510
	511	CASE ( 'ql_vp' )
	512	IF ( av == 0 ) THEN
	513	IF ( simulated_time >= particle_advection_start ) THEN
	514	DO i = nxl, nxr
	515	DO j = nys, nyn
	516	DO k = nzb, nz_do3d
	517	number_of_particles = prt_count(k,j,i)
	518	IF (number_of_particles <= 0) CYCLE
	519	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	520	DO n = 1, number_of_particles
	521	IF ( particles(n)%particle_mask ) THEN
	522	tend(k,j,i) = tend(k,j,i) + &
	523	particles(n)%weight_factor / &
	524	prt_count(k,j,i)
	525	ENDIF
	526	ENDDO
	527	ENDDO
	528	ENDDO
	529	ENDDO
	530	CALL exchange_horiz( tend, nbgp )
	531	ELSE
	532	tend = 0.0_wp
	533	ENDIF
[3435]	534	IF ( .NOT. mask_surface(mid) ) THEN
	535	DO i = 1, mask_size_l(mid,1)
	536	DO j = 1, mask_size_l(mid,2)
	537	DO k = 1, mask_size_l(mid,3)
	538	local_pf(i,j,k) = tend(mask_k(mid,k), &
	539	mask_j(mid,j),mask_i(mid,i))
	540	ENDDO
[3298]	541	ENDDO
	542	ENDDO
[3435]	543	ELSE
	544	!
	545	!-- Terrain-following masked output
	546	DO i = 1, mask_size_l(mid,1)
	547	DO j = 1, mask_size_l(mid,2)
	548	!
	549	!-- Get k index of highest horizontal surface
	550	topo_top_ind = &
	551	get_topography_top_index_ji( mask_j(mid,j), &
	552	mask_i(mid,i), &
	553	grid )
	554	DO k = 1, mask_size_l(mid,3)
	555	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
	556	local_pf(i,j,k) = &
	557	tend(kk,mask_j(mid,j),mask_i(mid,i))
	558	ENDDO
	559	ENDDO
	560	ENDDO
	561	ENDIF
[3298]	562	resorted = .TRUE.
	563	ELSE
	564	CALL exchange_horiz( ql_vp_av, nbgp )
	565	to_be_resorted => ql_vp_av
	566	ENDIF
	567
	568	CASE ( 'qv' )
	569	IF ( av == 0 ) THEN
[3435]	570	IF ( .NOT. mask_surface(mid) ) THEN
	571	DO i = 1, mask_size_l(mid,1)
	572	DO j = 1, mask_size_l(mid,2)
	573	DO k = 1, mask_size_l(mid,3)
	574	local_pf(i,j,k) = &
	575	q(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i)) - &
	576	ql(mask_k(mid,k),mask_j(mid,j),mask_i(mid,i))
	577	ENDDO
[3298]	578	ENDDO
	579	ENDDO
[3435]	580	ELSE
	581	!
	582	!-- Terrain-following masked output
	583	DO i = 1, mask_size_l(mid,1)
	584	DO j = 1, mask_size_l(mid,2)
	585	!
	586	!-- Get k index of highest horizontal surface
	587	topo_top_ind = &
	588	get_topography_top_index_ji( mask_j(mid,j), &
	589	mask_i(mid,i), &
	590	grid )
	591	DO k = 1, mask_size_l(mid,3)
	592	kk = MIN( topo_top_ind+mask_k(mid,k), nzt+1 )
	593	local_pf(i,j,k) = &
	594	q(kk,mask_j(mid,j),mask_i(mid,i)) - &
	595	ql(kk,mask_j(mid,j),mask_i(mid,i))
	596	ENDDO
	597	ENDDO
	598	ENDDO
	599	ENDIF
[3298]	600	resorted = .TRUE.
	601	ELSE
	602	to_be_resorted => qv_av
	603	ENDIF
	604
	605	CASE ( 'qr' )
	606	IF ( av == 0 ) THEN
	607	to_be_resorted => qr
	608	ELSE
	609	to_be_resorted => qr_av
	610	ENDIF
	611
[3421]	612	CASE ( 'rho_sea_water' )
[3298]	613	IF ( av == 0 ) THEN
	614	to_be_resorted => rho_ocean
	615	ELSE
	616	to_be_resorted => rho_ocean_av
	617	ENDIF
	618
	619	CASE ( 's' )
	620	IF ( av == 0 ) THEN
	621	to_be_resorted => s
	622	ELSE
	623	to_be_resorted => s_av
	624	ENDIF
	625
	626	CASE ( 'sa' )
	627	IF ( av == 0 ) THEN
	628	to_be_resorted => sa
	629	ELSE
	630	to_be_resorted => sa_av
	631	ENDIF
	632
	633	CASE ( 'u' )
	634	IF ( av == 0 ) THEN
	635	to_be_resorted => u
	636	ELSE
	637	to_be_resorted => u_av
	638	ENDIF
	639
	640	CASE ( 'v' )
	641	IF ( av == 0 ) THEN
	642	to_be_resorted => v
	643	ELSE
	644	to_be_resorted => v_av
	645	ENDIF
	646
[3421]	647	CASE ( 'thetav' )
[3298]	648	IF ( av == 0 ) THEN
	649	to_be_resorted => vpt
	650	ELSE
	651	to_be_resorted => vpt_av
	652	ENDIF
	653
	654	CASE ( 'w' )
[3435]	655	grid = 'w'
[3298]	656	IF ( av == 0 ) THEN
	657	to_be_resorted => w
	658	ELSE
	659	to_be_resorted => w_av
	660	ENDIF
	661
	662	CASE DEFAULT
[3421]	663
[3298]	664	!
	665	!-- Radiation quantity
	666	IF ( radiation ) THEN
	667	CALL radiation_data_output_mask(av, domask(mid,av,ivar), found,&
	668	local_pf )
	669	ENDIF
	670
	671	IF ( air_chemistry ) THEN
	672	CALL chem_data_output_mask(av, domask(mid,av,ivar), found, &
	673	local_pf )
	674	ENDIF
	675	!
[3467]	676	!-- SALSA quantities
	677	IF ( salsa ) THEN
	678	CALL salsa_data_output_mask( av, domask(mid,av,ivar), found, &
	679	local_pf )
	680	ENDIF
	681	!
[3298]	682	!-- User defined quantity
	683	IF ( .NOT. found ) THEN
	684	CALL user_data_output_mask(av, domask(mid,av,ivar), found, &
	685	local_pf )
	686	ENDIF
	687
	688	resorted = .TRUE.
	689
	690	IF ( .NOT. found ) THEN
	691	WRITE ( message_string, * ) 'no masked output available for: ',&
	692	TRIM( domask(mid,av,ivar) )
	693	CALL message( 'data_output_mask', 'PA0327', 0, 0, 0, 6, 0 )
	694	ENDIF
	695
	696	END SELECT
	697
	698	!
	699	!-- Resort the array to be output, if not done above
	700	IF ( .NOT. resorted ) THEN
[3435]	701	IF ( .NOT. mask_surface(mid) ) THEN
	702	!
	703	!-- Default masked output
	704	DO i = 1, mask_size_l(mid,1)
	705	DO j = 1, mask_size_l(mid,2)
	706	DO k = 1, mask_size_l(mid,3)
	707	local_pf(i,j,k) = to_be_resorted(mask_k(mid,k), &
	708	mask_j(mid,j),mask_i(mid,i))
	709	ENDDO
[3298]	710	ENDDO
	711	ENDDO
[3435]	712
	713	ELSE
	714	!
	715	!-- Terrain-following masked output
	716	DO i = 1, mask_size_l(mid,1)
	717	DO j = 1, mask_size_l(mid,2)
	718	!
	719	!-- Get k index of highest horizontal surface
	720	topo_top_ind = get_topography_top_index_ji( mask_j(mid,j), &
	721	mask_i(mid,i), &
	722	grid )
	723	!
	724	!-- Save output array
	725	DO k = 1, mask_size_l(mid,3)
	726	local_pf(i,j,k) = to_be_resorted( &
	727	MIN( topo_top_ind+mask_k(mid,k), &
	728	nzt+1 ), &
	729	mask_j(mid,j), &
	730	mask_i(mid,i) )
	731	ENDDO
	732	ENDDO
	733	ENDDO
	734
	735	ENDIF
[3298]	736	ENDIF
	737
	738	!
	739	!-- I/O block. I/O methods are implemented
	740	!-- (1) for parallel execution
	741	!-- a. with netCDF 4 parallel I/O-enabled library
	742	!-- b. with netCDF 3 library
	743	!-- (2) for serial execution.
	744	!-- The choice of method depends on the correct setting of preprocessor
	745	!-- directives __parallel and __netcdf4_parallel as well as on the parameter
	746	!-- netcdf_data_format.
	747	#if defined( __parallel )
	748	#if defined( __netcdf4_parallel )
	749	IF ( netcdf_data_format > 4 ) THEN
	750	!
	751	!-- (1) a. Parallel I/O using netCDF 4 (not yet tested)
	752	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	753	id_var_domask(mid,av,ivar), local_pf, &
	754	start = (/ mask_start_l(mid,1), mask_start_l(mid,2), &
	755	mask_start_l(mid,3), domask_time_count(mid,av) /), &
	756	count = (/ mask_size_l(mid,1), mask_size_l(mid,2), &
	757	mask_size_l(mid,3), 1 /) )
	758	CALL netcdf_handle_error( 'data_output_mask', 461 )
	759	ELSE
	760	#endif
	761	!
	762	!-- (1) b. Conventional I/O only through PE0
	763	!-- PE0 receives partial arrays from all processors of the respective mask
	764	!-- and outputs them. Here a barrier has to be set, because otherwise
	765	!-- "-MPI- FATAL: Remote protocol queue full" may occur.
	766	CALL MPI_BARRIER( comm2d, ierr )
	767
	768	ngp = mask_size_l(mid,1) * mask_size_l(mid,2) * mask_size_l(mid,3)
	769	IF ( myid == 0 ) THEN
	770	!
	771	!-- Local array can be relocated directly.
	772	total_pf( &
	773	mask_start_l(mid,1):mask_start_l(mid,1)+mask_size_l(mid,1)-1, &
	774	mask_start_l(mid,2):mask_start_l(mid,2)+mask_size_l(mid,2)-1, &
	775	mask_start_l(mid,3):mask_start_l(mid,3)+mask_size_l(mid,3)-1 ) &
	776	= local_pf
	777	!
	778	!-- Receive data from all other PEs.
	779	DO n = 1, numprocs-1
	780	!
	781	!-- Receive index limits first, then array.
	782	!-- Index limits are received in arbitrary order from the PEs.
	783	CALL MPI_RECV( ind(1), 6, MPI_INTEGER, MPI_ANY_SOURCE, 0, &
	784	comm2d, status, ierr )
	785	!
	786	!-- Not all PEs have data for the mask
	787	IF ( ind(1) /= -9999 ) THEN
	788	ngp = ( ind(2)-ind(1)+1 ) * (ind(4)-ind(3)+1 ) * &
	789	( ind(6)-ind(5)+1 )
	790	sender = status(MPI_SOURCE)
	791	DEALLOCATE( local_pf )
	792	ALLOCATE(local_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)))
	793	CALL MPI_RECV( local_pf(ind(1),ind(3),ind(5)), ngp, &
	794	MPI_REAL, sender, 1, comm2d, status, ierr )
	795	total_pf(ind(1):ind(2),ind(3):ind(4),ind(5):ind(6)) &
	796	= local_pf
	797	ENDIF
	798	ENDDO
	799
	800	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	801	id_var_domask(mid,av,ivar), total_pf, &
	802	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
	803	count = (/ mask_size(mid,1), mask_size(mid,2), &
	804	mask_size(mid,3), 1 /) )
	805	CALL netcdf_handle_error( 'data_output_mask', 462 )
	806
	807	ELSE
	808	!
	809	!-- If at least part of the mask resides on the PE, send the index
	810	!-- limits for the target array, otherwise send -9999 to PE0.
	811	IF ( mask_size_l(mid,1) > 0 .AND. mask_size_l(mid,2) > 0 .AND. &
	812	mask_size_l(mid,3) > 0 ) &
	813	THEN
	814	ind(1) = mask_start_l(mid,1)
	815	ind(2) = mask_start_l(mid,1) + mask_size_l(mid,1) - 1
	816	ind(3) = mask_start_l(mid,2)
	817	ind(4) = mask_start_l(mid,2) + mask_size_l(mid,2) - 1
	818	ind(5) = mask_start_l(mid,3)
	819	ind(6) = mask_start_l(mid,3) + mask_size_l(mid,3) - 1
	820	ELSE
	821	ind(1) = -9999; ind(2) = -9999
	822	ind(3) = -9999; ind(4) = -9999
	823	ind(5) = -9999; ind(6) = -9999
	824	ENDIF
	825	CALL MPI_SEND( ind(1), 6, MPI_INTEGER, 0, 0, comm2d, ierr )
	826	!
	827	!-- If applicable, send data to PE0.
	828	IF ( ind(1) /= -9999 ) THEN
	829	CALL MPI_SEND( local_pf(1,1,1), ngp, MPI_REAL, 0, 1, comm2d, &
	830	ierr )
	831	ENDIF
	832	ENDIF
	833	!
	834	!-- A barrier has to be set, because otherwise some PEs may proceed too
	835	!-- fast so that PE0 may receive wrong data on tag 0.
	836	CALL MPI_BARRIER( comm2d, ierr )
	837	#if defined( __netcdf4_parallel )
	838	ENDIF
	839	#endif
	840	#else
	841	!
	842	!-- (2) For serial execution of PALM, the single processor (PE0) holds all
	843	!-- data and writes them directly to file.
	844	nc_stat = NF90_PUT_VAR( id_set_mask(mid,av), &
	845	id_var_domask(mid,av,ivar), local_pf, &
	846	start = (/ 1, 1, 1, domask_time_count(mid,av) /), &
	847	count = (/ mask_size_l(mid,1), mask_size_l(mid,2),&
	848	mask_size_l(mid,3), 1 /) )
	849	CALL netcdf_handle_error( 'data_output_mask', 463 )
	850	#endif
	851
	852	ivar = ivar + 1
	853
	854	ENDDO
	855
	856	!
	857	!-- Deallocate temporary arrays.
	858	DEALLOCATE( local_pf )
	859	#if defined( __parallel )
	860	IF ( myid == 0 ) THEN
	861	DEALLOCATE( total_pf )
	862	ENDIF
	863	#endif
	864
	865	!
	866	!-- Switch back to original format given by user (see beginning of this routine)
	867	netcdf_data_format = netcdf_data_format_save
	868
	869	CALL cpu_log( log_point(49), 'data_output_mask', 'stop' )
	870	#endif
	871
[3435]	872
[3298]	873	END SUBROUTINE data_output_mask

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