New:

Plant canopy model of Watanabe (2004,BLM 112,307341) added.
It can be switched on by the inipar parameter plant_canopy.
The inipar parameter canopy_mode can be used to prescribe a
plant canopy type. The default case is a homogeneous plant
canopy. Heterogeneous distributions of the leaf area
density and the canopy drag coefficient can be defined in the
new routine user_init_plant_canopy (user_interface).
The inipar parameters lad_surface, lad_vertical_gradient and
lad_vertical_gradient_level can be used in order to
prescribe the vertical profile of leaf area density. The
inipar parameter drag_coefficient determines the canopy
drag coefficient.
Finally, the inipar parameter pch_index determines the
index of the upper boundary of the plant canopy.
Allow new case bc_uv_t = 'dirichlet_0' for channel flow.
For unknown variables (CASE DEFAULT) call new subroutine user_data_output_dvrp
Pressure boundary conditions for vertical walls added to the multigrid solver.
They are applied using new wall flag arrays (wall_flags_..) which are defined
for each grid level. New argument gls added to routine user_init_grid
(user_interface).
Frequence of sorting particles can be controlled with new particles_par
parameter dt_sort_particles. Sorting is moved from the SGS timestep loop in
advec_particles after the end of this loop.
advec_particles, check_parameters, data_output_dvrp, header, init_3d_model, init_grid, init_particles, init_pegrid, modules, package_parin, parin, plant_canopy_model, read_var_list, read_3d_binary, user_interface, write_var_list, write_3d_binary
Changed:
Redefine initial nzb_local as the actual total size of topography (later the
extent of topography in nzb_local is reduced by 1dx at the E topography walls
and by 1dy at the N topography walls to form the basis for nzb_s_inner);
for consistency redefine 'single_building' case.
Vertical profiles now based on nzb_s_inner; they are divided by
ngp_2dh_s_inner (scalars, procucts of scalars) and ngp_2dh (staggered velocity
components and their products, procucts of scalars and velocity components),
respectively.
Allow two instead of one digit to specify isosurface and slicer variables.
Status of 3Dvolume NetCDF data file only depends on switch netcdf_64bit_3d (check_open)
prognostic_equations include the respective wall_*flux in the parameter list of
calls of diffusion_s. Same as before, only the values of wall_heatflux(0:4)
can be assigned. At present, wall_humidityflux, wall_qflux, wall_salinityflux,
and wall_scalarflux are kept zero. diffusion_s uses the respective wall_*flux
instead of wall_heatflux. This update serves two purposes:
 it avoids errors in calculations with humidity/scalar/salinity and prescribed
nonzero wall_heatflux,
 it prepares PALM for a possible assignment of wall fluxes of
humidity/scalar/salinity in a future release.
buoyancy, check_open, data_output_dvrp, diffusion_s, diffusivities, flow_statistics, header, init_3d_model, init_dvrp, init_grid, modules, prognostic_equations
Errors:
Bugfix: summation of sums_l_l in diffusivities.
Several bugfixes in the ocean part: Initial density rho is calculated
(init_ocean). Error in initializing u_init and v_init removed
(check_parameters). Calculation of density flux now starts from
nzb+1 (production_e).
Bugfix: pleft/pright changed to pnorth/psouth in sendrecv of particle tail
numbers along y, small bugfixes in the SGS part (advec_particles)
Bugfix: model_string needed a default value (combine_plot_fields)
Bugfix: wavenumber calculation for even nx in routines maketri (poisfft)
Bugfix: assignment of fluxes at walls
Bugfix: absolute value of f must be used when calculating the Blackadar mixing length (init_1d_model)
advec_particles, check_parameters, combine_plot_fields, diffusion_s, diffusivities, init_ocean, init_1d_model, poisfft, production_e
