Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 719

Last change on this file since 719 was 717, checked in by gryschka, 14 years ago
added lckordi
Property svn:keywords set to `Id Rev`
File size: 49.3 KB

Line
1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 717 2011-04-03 16:04:01Z gryschka $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84	# 27/07/07 - Siggi - autan admitted
85	# 03/08/07 - Marcus- lcfimm admitted
86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
88	# suggestions
89	# 19/10/07 - Marcus- add new optional argument -g group_number
90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
91	# 30/10/07 - Marcus- further adjustments for queues on lctit
92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
93	# Science)
94	# 14/07/08 - Siggi - adjustments for lcsgih
95	# 23/09/08 - Gerald- paesano admitted
96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
104	# now run on the data nodes (feature=data)
105	# 25/08/09 - BjornM- adapted for lck
106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
108	# set in the config file by the user
109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
110	# adding special1q
111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
112	# 16/10/09 - Carolin-adding permq
113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
114	# 03/02/10 - Siggi - bug in serial jobs removed
115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
116	# notification)
117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
118	# module_calls
119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
122	# lcxt4
123	# 08/12/10 - Siggi - initialization of the module command changed for
124	# SGI-ICE/lcsgi
125	# adjustments for Kyushu Univ. (lcrte, ibmku)
126	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
127	# institute of technology (lctit)
128	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
129	# 06/03/11 - Siggi - adjustments for ibmkisti
130	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
131	# 03/04/11 - Micha - added lckordi
132
133
134
135	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
136	delete_dayfile=false
137	email_notification=none
138	group_number=none
139	locat=normal
140	no_default_queue=none
141	no_submit=false
142	job_catalog="~/job_queue"
143	job_name=none
144	local_user=$LOGNAME
145	node_usage=shared
146	numprocs=0
147	punkte="..........................................................."
148	submcom=qsub
149	queue=default
150	remote_host=none
151	remote_user=""
152	verify=true
153
154	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
155	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
156	typeset -L20 spalte1
157	typeset -R40 spalte2
158	typeset -L60 spalte3
159
160
161
162	# FEHLERBEHANDLUNG
163	# BEI EXIT:
164	trap 'if [[ $locat != normal ]]
165	then
166	case $locat in
167	(option) printf "\n --> available optios can be displayed"
168	printf " by typing:"
169	printf "\n \"subjob ?\" \n";;
170	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
171	(*) printf "\n +++ unknown error"
172	printf "\n please inform S. Raasch!\n"
173	esac
174	[[ -f $job_to_send ]] && rm $job_to_send
175	printf "\n\n+++ SUBJOB killed \n\n"
176	fi' exit
177
178
179	# BEI TERMINAL-BREAK:
180	trap '[[ -f $job_to_send ]] && rm $job_to_send
181	printf "\n\n+++ SUBJOB killed \n\n"
182	exit
183	' 2
184
185
186
187
188	# LOKALEN HOSTNAMEN FESTSTELLEN
189	local_host=$(hostname)
190
191
192
193	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
194	# UEBERHAUPT ZULAESSIG IST
195	# Note: One of the entries for "lck" or "lckordi" always has to be
196	# comment out, because the hostname (node*) is same for both machines
197	case $local_host in
198	(atmos) local_addres=172.20.25.35; local_host=lcide;;
199	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
200	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
201	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
202	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
203	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
204	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
205	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
206	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
207	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
208	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
209	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
210	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
211	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
212	(cs*) local_addres=136.172.44.131; local_host=nech;;
213	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
214	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
215	(node*) local_addres=165.132.26.61 local_host=lck;;
216	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
217	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
218	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
219	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
220	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
221	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
222	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
223	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
224	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
225	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
226	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
227	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
228	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
229	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
230	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
231	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
232	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
233	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
234	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
235	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
236	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
237	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
238	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
239	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
240	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
241	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
242	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
243	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
244	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
245	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
246	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
247	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
248	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
249	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
250	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
251	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
252	(*) printf "\n +++ \"$local_host\" unknown";
253	printf "\n please inform S. Raasch!";
254	locat=parameter; exit;;
255	esac
256
257
258
259	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
260	remote_host=$local_host
261
262
263
264
265	# PROZEDUROPTIONEN EINLESEN
266	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
267	do
268	case $option in
269	(c) job_catalog=$OPTARG;;
270	(d) delete_dayfile=true;;
271	(D) no_submit=true;;
272	(e) email_notification=$OPTARG;;
273	(g) group_number=$OPTARG;;
274	(h) remote_host=$OPTARG;;
275	(m) memory=$OPTARG;;
276	(n) job_name=$OPTARG;;
277	(N) node_usage=$OPTARG;;
278	(O) threads_per_task=$OPTARG;;
279	(q) no_default_queue=$OPTARG;;
280	(t) cputime=$OPTARG;;
281	(T) tasks_per_node=$OPTARG;;
282	(u) remote_user=$OPTARG;;
283	(v) verify=false;;
284	(X) numprocs=$OPTARG;;
285	(\?) printf "\n +++ Option $OPTARG unknown \n";
286	locat=option; exit;;
287	esac
288	done
289
290
291	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
292	shift OPTIND-1; file_to_send=$1
293
294
295	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
296	if [ "$1" = "?" ]
297	then
298	(printf "\n *** subjob can be called as follows:\n"
299	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
300	printf "\n Description of available options:\n"
301	printf "\n Option Description Default-Value"
302	printf "\n -c job-input- and output-catalog ~/job_queue"
303	printf "\n -d no job-protocol will be created ---"
304	printf "\n -D only the job-file will be created ---"
305	printf "\n -h execution host, available hosts: $remote_host"
306	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
307	printf "\n lctit, nech, necriam, unics"
308	printf "\n -m memory demand per process in MByte ---"
309	printf "\n -n jobname <jobdatei>"
310	printf "\n -O threads per task (for OpenMP usage) 1"
311	printf "\n -q job-queue to be used default"
312	printf "\n -t allowed cpu-time in seconds ---"
313	printf "\n -T tasks per node (on parallel hosts) ---"
314	printf "\n -u username on execution host from .netrc"
315	printf "\n -v no prompt for confirmation ---"
316	printf "\n -X # of processors (on parallel hosts) 1"
317	printf "\n "
318	printf "\n The only possible positional parameter is <jobfile>:"
319	printf "\n The complete NQS-job must be provided here."
320	printf "\n <jobfile>=? creates this outline\n\n") \| more
321	exit
322	fi
323
324
325
326	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
327	if [[ "$file_to_send" = "" ]]
328	then
329	printf "\n +++ job-file missing"
330	locat=parameter; exit
331	else
332	if [[ -f $file_to_send ]]
333	then
334	true
335	else
336	printf "\n +++ job-file: "
337	printf "\n $file_to_send"
338	printf "\n does not exist"
339	locat=parameter; exit
340	fi
341	fi
342
343
344
345	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
346	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
347	if [[ $job_name = none ]]
348	then
349	job_name=$file_to_send
350	fi
351	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
352	then
353	printf "\n +++ job-file name: "
354	printf "\n $job_name"
355	printf "\n must not contain \"/\"-characters"
356	locat=parameter; exit
357	fi
358
359
360
361
362	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
363	# ODER WENN HOST NICHT ANGEGEBEN WURDE
364	if [[ $remote_host = none ]]
365	then
366	printf "\n +++ host missing"
367	locat=option; exit
368	else
369	case $remote_host in
370	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
371	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
372	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
373	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
374	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
375	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
376	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
377	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
378	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
379	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
380	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
381	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
382	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
383	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
384	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
385	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
386	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
387	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
388	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
389	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
390	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
391	locat=parameter; exit;;
392	esac
393	fi
394
395
396	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
397	if [[ $no_default_queue != none ]]
398	then
399	error=false
400	ndq=$no_default_queue
401	case $remote_host in
402	(ibm) case $ndq in
403	(p690_express\|p690_standard\|p690_long) error=false;;
404	(*) error=true;;
405	esac;;
406	(ibmh) case $ndq in
407	(no_class) error=false;;
408	(*) error=true;;
409	esac;;
410	(ibmkisti) case $ndq in
411	(class.32plus\|class.1-2\|class.2-32) error=false;;
412	(*) error=true;;
413	esac;;
414	(ibmku) case $ndq in
415	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
416	(*) error=true;;
417	esac;;
418	(ibms) case $ndq in
419	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
420	(*) error=true;;
421	esac;;
422	(ibmy) case $ndq in
423	(parallel) error=false;;
424	(*) error=true;;
425	esac;;
426	(lckyoto) case $ndq in
427	(eh\|ph) error=false;;
428	(*) error=true;;
429	esac;;
430	(lcsgib\|lcsgih) case $ndq in
431	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
432	(*) error=true;;
433	esac;;
434	(lctit) case $ndq in
435	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
436	(*) error=true;;
437	esac;;
438	(t3eb) case $ndq in
439	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
440	(*) error=true;;
441	esac;;
442	(necriam) case $ndq in
443	(SP\|SS\|P6) error=false;;
444	(*) error=true;;
445	esac;;
446	(t3eh) case $ndq in
447	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
448	(*) error=true;;
449	esac;;
450	(t3ej2\|t3ej5) case $ndq in
451	(low\|normal\|high) error=false;;
452	(*) error=true;;
453	esac;;
454	(t3es) case $ndq in
455	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
456	(*) error=true;;
457	esac;;
458	(unics) case $ndq in
459	(unics\|ht) error=false;;
460	(*) error=true;;
461	esac;;
462	esac
463	if [[ $error = true ]]
464	then
465	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
466	locat=parameter; exit
467	else
468	queue=$no_default_queue
469	fi
470	fi
471
472
473
474	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
475	# AUFTEILEN
476	done=false
477	while [[ $done = false ]]
478	do
479	if (( $cputime <= 0 ))
480	then
481	printf "\n +++ wrong cpu-time or cpu-time missing"
482	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
483	printf "\n >>> "
484	read cputime 1>/dev/null 2>&1
485	else
486	done=true
487	fi
488	done
489	if [[ $remote_host = nech ]]
490	then
491	if (( tasks_per_node != 0 ))
492	then
493	(( cputime = cputime * tasks_per_node ))
494	elif [[ $numprocs != 0 ]]
495	then
496	(( cputime = cputime * numprocs ))
497	fi
498	fi
499	(( stunden = cputime / 3600 ))
500	(( resttime = cputime - stunden * 3600 ))
501	(( minuten = resttime / 60 ))
502	(( sekunden = resttime - minuten * 60 ))
503	timestring=${stunden}:${minuten}:${sekunden}
504
505
506
507	# PRUEFEN DER KERNSPEICHERANFORDERUNG
508	done=false
509	while [[ $done = false ]]
510	do
511	if (( memory <= 0 ))
512	then
513	printf "\n +++ wrong memory demand or memory demand missing"
514	printf "\n >>> Please type memory in MByte per process as INTEGER:"
515	printf "\n >>> "
516	read memory 1>/dev/null 2>&1
517	else
518	done=true
519	fi
520	done
521
522	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
523	then
524	if (( tasks_per_node != 0 ))
525	then
526	(( Memory = memory * tasks_per_node / 1000 ))
527	elif [[ $numprocs != 0 ]]
528	then
529	(( Memory = memory * numprocs / 1000 ))
530	else
531	(( Memory = memory / 1000 ))
532	fi
533	elif [[ $remote_host = lctit ]]
534	then
535	(( Memory = memory * tasks_per_node / 1000 ))
536	fi
537
538
539	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
540	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
541	then
542	(( memory = memory * threads_per_task ))
543	fi
544
545
546	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
547	if (( tasks_per_node != 0 ))
548	then
549	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
550	fi
551
552	# Calculate number of processes per node
553	(( processes_per_node = tasks_per_node * threads_per_task ))
554
555	# Calculate number of MPI tasks
556	(( mpi_tasks = numprocs / threads_per_task ))
557
558
559	# HEADER-AUSGABE
560	if [[ $verify = true ]]
561	then
562	printf "\n\n"
563	printf "#--------------------------------------------------------------# \n"
564	spalte1=SUBJOB;spalte2=$(date)
565	printf "\| $spalte1$spalte2 \| \n"
566	printf "\| \| \n"
567	printf "\| values of parameters/options: \| \n"
568	spalte1=local_host$punkte; spalte2=$punkte$local_host
569	printf "\| $spalte1$spalte2 \| \n"
570	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
571	printf "\| $spalte1$spalte2 \| \n"
572	spalte1=queue$punkte; spalte2=$punkte$queue
573	printf "\| $spalte1$spalte2 \| \n"
574	spalte1=memory$punkte; spalte2="$punkte$memory mb"
575	printf "\| $spalte1$spalte2 \| \n"
576	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
577	printf "\| $spalte1$spalte2 \| \n"
578	spalte1=job_name$punkte; spalte2="$punkte$job_name"
579	printf "\| $spalte1$spalte2 \| \n"
580	printf "#--------------------------------------------------------------# \n\n"
581
582
583	# KONTROLLABFRAGE, OB ALLES O.K.
584	antwort="dummy"
585	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
586	do
587	read antwort?" >>> continue (y/n) ? "
588	done
589	if [[ $antwort = n \|\| $antwort = N ]]
590	then
591	locat=verify; exit
592	fi
593	printf "\n"
594	fi
595
596
597
598	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
599	kennung=$RANDOM
600	job_on_remhost=${job_name}_${kennung}_$local_host
601	job_to_send=job_to_send_$kennung
602	if [[ $delete_dayfile = false ]]
603	then
604	remote_dayfile=${local_host}_${job_name}_result_$kennung
605	local_dayfile=${remote_host}_${job_name}
606	else
607	remote_dayfile=/dev/null
608	fi
609
610
611
612	# Generate the batch job scripts (qsub/msub/LoadLeveler)
613	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
614	then
615
616	# General LoadLeveler settings
617	execute_in_shell="#!/bin/ksh"
618	use_shell="# @ shell = /bin/ksh"
619	consumable_memory="ConsumableMemory($memory mb)"
620	class="# @ class = $queue"
621	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
622	network_to_use="# @ network.mpi = sn_all,shared,us"
623	data_limit="# @ data_limit = 1.76gb"
624	image_size="# @ image_size = 50"
625	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
626
627	if [[ $email_notification = none ]]
628	then
629	notify_user=""
630	else
631	notify_user="# @ notify_user = $email_notification"
632	if [[ $delete_dayfile = true ]]
633	then
634	notification='# @ notification = never'
635	fi
636	fi
637
638	if [[ $remote_host = ibmh ]]
639	then
640	data_limit=""
641	network_to_use=""
642	class=""
643	environment=""
644	elif [[ $remote_host = ibmkisti ]]
645	then
646	network_to_use="# @ network.MPI = sn_all,shared,US"
647	wall_clock_limit="# @ wall_clock_limit = $timestring"
648	if [[ $threads_per_task = 1 ]]
649	then
650	rset="# @ rset = RSET_MCM_AFFINITY"
651	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
652	fi
653	environment=""
654	use_shell=""
655	data_limit=""
656	image_size=""
657	elif [[ $remote_host = ibmku ]]
658	then
659	execute_in_shell="#!/usr/bin/ksh"
660	use_shell="# @ shell = /usr/bin/ksh"
661	consumable_memory=""
662	environment=""
663	network_to_use="# @ network.mpi = sn_all,shared,us"
664	data_limit=""
665	image_size=""
666	elif [[ $remote_host = ibms ]]
667	then
668	network_to_use="# @ network.mpi = csss,shared,us"
669	elif [[ $remote_host = ibmy ]]
670	then
671	consumable_memory=""
672	network_to_use=""
673	fi
674
675	cat > $job_to_send << %%END%%
676	$execute_in_shell
677	$use_shell
678
679	# @ job_type = parallel
680	# @ job_name = $job_name
681	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
682	# @ output = $remote_dayfile
683	# @ error = $remote_dayfile
684	$wall_clock_limit
685	$image_size
686	$class
687	$environment
688	$network_to_use
689	$data_limit
690	$rset
691	$mcm_affinity_options
692	$notification
693	$notify_user
694
695	%%END%%
696
697	if (( nodes > 0 ))
698	then
699
700	if [[ $remote_host != ibmkisti ]]
701	then
702
703	cat >> $job_to_send << %%END%%
704	# @ node = $nodes
705	# @ tasks_per_node = $processes_per_node
706	# @ node_usage = $node_usage
707	# @ queue
708
709	%%END%%
710
711	else
712
713	cat >> $job_to_send << %%END%%
714	# @ total_tasks = $mpi_tasks
715	# @ blocking = unlimited
716	# @ queue
717
718	%%END%%
719
720	fi
721
722	else
723
724	if [[ $remote_host != ibmy ]]
725	then
726
727	cat >> $job_to_send << %%END%%
728	# @ blocking = unlimited
729	# @ total_tasks = $numprocs
730	# @ node_usage = $node_usage
731	# @ queue
732
733	%%END%%
734
735	else
736
737	cat >> $job_to_send << %%END%%
738	# @ node = 1
739	# @ total_tasks = $numprocs
740	# @ queue
741
742	%%END%%
743
744	fi
745
746	fi
747
748	# workaround because of silly job filter on ibmkisti
749	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
750	then
751	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
752	fi
753
754	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
755	then
756
757	cat > $job_to_send << %%END%%
758	#!/bin/ksh
759
760	# @ job_type = serial
761	# @ node_usage = $node_usage
762	# @ job_name = palm
763	# @ wall_clock_limit = ${timestring},$timestring
764	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
765	# @ output = $remote_dayfile
766	# @ error = $remote_dayfile
767	$class
768	$notification
769
770	# @ queue
771
772	%%END%%
773
774	elif [[ $remote_host = lcfimm ]]
775	then
776
777	if [[ $numprocs != 0 ]]
778	then
779	cat > $job_to_send << %%END%%
780	#!/bin/ksh
781	#PBS -N $job_name
782	#PBS -A $project_account
783	#PBS -l walltime=$timestring
784	#PBS -l nodes=${nodes}:ppn=$processes_per_node
785	#PBS -l pmem=${memory}mb
786	#PBS -m abe
787	#PBS -o $remote_dayfile
788	#PBS -j oe
789	mpd &
790
791	%%END%%
792
793	else
794	cat > $job_to_send << %%END%%
795	#!/bin/ksh
796	#PBS -N $job_name
797	#PBS -A $project_account
798	#PBS -l walltime=$timestring
799	#PBS -l ncpus=1
800	#PBS -l pmem=${memory}mb
801	#PBS -m abe
802	#PBS -o $remote_dayfile
803	#PBS -j oe
804
805	%%END%%
806
807	fi
808
809	elif [[ $remote_host = lck \|\| $remote_host = lckordi ]]
810	then
811
812	if [[ $numprocs != 0 ]]
813	then
814	cat > $job_to_send << %%END%%
815	#!/bin/ksh
816	#PBS -N $job_name
817	#PBS -l walltime=$timestring
818	#PBS -l ncpus=$numprocs
819	#PBS -l pmem=${memory}mb
820	#PBS -o $remote_dayfile
821	#PBS -j oe
822
823	mpd &
824
825	%%END%%
826
827	else
828	cat > $job_to_send << %%END%%
829	#!/bin/ksh
830	#PBS -N $job_name
831	#PBS -l walltime=$timestring
832	#PBS -l ncpus=1
833	#PBS -l pmem=${memory}mb
834	#PBS -o $remote_dayfile
835	#PBS -j oe
836
837	%%END%%
838
839	fi
840
841	elif [[ $remote_host = lcyon ]]
842	then
843
844	if [[ $numprocs != 0 ]]
845	then
846	cat > $job_to_send << %%END%%
847	#!/bin/ksh
848	#PBS -N $job_name
849	#PBS -l walltime=$timestring
850	#PBS -l ncpus=$numprocs
851	#PBS -l pmem=${memory}mb
852	#PBS -o $remote_dayfile
853	#PBS -j oe
854
855	%%END%%
856
857	else
858	cat > $job_to_send << %%END%%
859	#!/bin/ksh
860	#PBS -N $job_name
861	#PBS -l walltime=$timestring
862	#PBS -l ncpus=1
863	#PBS -l pmem=${memory}mb
864	#PBS -o $remote_dayfile
865	#PBS -j oe
866
867	%%END%%
868
869	fi
870
871	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
872	then
873
874	if [[ "$sgi_feature" != "" ]]
875	then
876	feature_directive="#PBS -l feature=$sgi_feature"
877	else
878	feature_directive=""
879	fi
880
881	if [[ $queue = dataq \|\| $queue = permq ]]
882	then
883	feature_directive="#PBS -l feature=data"
884	fi
885
886	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
887	then
888	queue_directive="#PBS -q $queue"
889	else
890	queue_directive=""
891	fi
892
893	if [[ $email_notification = none ]]
894	then
895	email_directive=""
896	else
897	email_directive="#PBS -M $email_notification"
898	fi
899
900	if [[ $numprocs != 0 ]]
901	then
902	cat > $job_to_send << %%END%%
903	#!/bin/bash
904	#PBS -N $job_name
905	#PBS -l walltime=$timestring
906	#PBS -l nodes=$nodes:ppn=${processes_per_node}
907	#PBS -l naccesspolicy=$node_usage
908	#PBS -o $remote_dayfile
909	#PBS -j oe
910	$feature_directive
911	$queue_directive
912	$email_directive
913
914	eval \`/sw/swdist/bin/modulesinit\`
915	#. /usr/share/modules/init/bash
916	$module_calls
917
918	echo ld_library_path=\$LD_LIBRARY_PATH
919
920	%%END%%
921
922	else
923	cat > $job_to_send << %%END%%
924	#PBS -S /bin/bash
925	#PBS -N $job_name
926	#PBS -l walltime=$timestring
927	#PBS -l ncpus=1
928	#PBS -o $remote_dayfile
929	#PBS -j oe
930	$queue_directive
931	$email_directive
932
933	eval \`/sw/swdist/bin/modulesinit\`
934	#. /usr/share/modules/init/bash
935	$module_calls
936
937	%%END%%
938
939	fi
940
941	elif [[ $remote_host = lcxt4 ]]
942	then
943
944	if [[ $numprocs != 0 ]]
945	then
946	cat > $job_to_send << %%END%%
947	#!/bin/ksh
948	#PBS -S /bin/ksh
949	#PBS -N $job_name
950	#PBS -A $project_account
951	#PBS -j oe
952	#PBS -l walltime=$timestring
953	#PBS -l mppwidth=${numprocs}
954	#PBS -l mppnppn=${processes_per_node}
955	#PBS -m abe
956	#PBS -o $remote_dayfile
957	$email_directive
958
959	. /opt/modules/default/init/ksh
960	$module_calls
961
962	%%END%%
963
964	else
965	cat > $job_to_send << %%END%%
966	#!/bin/ksh
967	#PBS -S /bin/ksh
968	#PBS -N $job_name
969	#PBS -A $project_account
970	#PBS -j oe
971	#PBS -l walltime=$timestring
972	#PBS -l ncpus=1
973	#PBS -l pmem=${memory}mb
974	#PBS -m abe
975	$email_directive
976	#PBS -o $remote_dayfile
977
978	. /opt/modules/default/init/ksh
979	$module_calls
980
981	%%END%%
982
983	fi
984
985	elif [[ $remote_host = lckyoto ]]
986	then
987
988	cat > $job_to_send << %%END%%
989	#!/bin/ksh
990	# @\$-o $remote_dayfile
991	# @\$-eo -oi
992	# @\$-lP 16
993	# @\$-lp 1
994	# @\$-lm 28gb -llm unlimited -ls unlimited
995	# @\$-q $queue
996	# @\$-Pvn abs_pack
997	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
998	#. /thin/local/etc/setprofile/intel-11.0.sh
999	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1000	. ~/.myprofile
1001	#. /home2/t/t51254/palm/current_version/myprofile
1002	#. /thin/apps/pgi/mpi.sh
1003	#
1004	env
1005	#
1006	set -x
1007
1008	%%END%%
1009
1010	elif [[ $remote_host = lcxt5m ]]
1011	then
1012
1013	if [[ $numprocs != 0 ]]
1014	then
1015	cat > $job_to_send << %%END%%
1016	#!/bin/ksh
1017	#PBS -S /bin/ksh
1018	#PBS -N $job_name
1019	#PBS -j oe
1020	#PBS -l walltime=$timestring
1021	#PBS -l mppwidth=${numprocs}
1022	#PBS -l mppnppn=${processes_per_node}
1023	#PBS -m abe
1024	#PBS -o $remote_dayfile
1025
1026	. /opt/modules/default/init/ksh
1027	$module_calls
1028
1029	%%END%%
1030
1031	else
1032	cat > $job_to_send << %%END%%
1033	#!/bin/ksh
1034	#PBS -S /bin/ksh
1035	#PBS -N $job_name
1036	#PBS -j oe
1037	#PBS -l walltime=$timestring
1038	#PBS -l ncpus=1
1039	#PBS -l pmem=${memory}mb
1040	#PBS -m abe
1041	#PBS -o $remote_dayfile
1042
1043	. /opt/modules/default/init/ksh
1044	$module_calls
1045
1046	%%END%%
1047
1048	fi
1049
1050	elif [[ $remote_host = nech ]]
1051	then
1052
1053	if (( nodes > 1 ))
1054	then
1055	cat > $job_to_send << %%END%%
1056	#!/bin/ksh
1057	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1058	#PBS -l ${qsubmem}=${Memory}gb
1059	#PBS -b $nodes
1060	#PBS -o $remote_dayfile
1061	#PBS -N palm
1062	#PBS -j o
1063	#PBS -T mpisx
1064
1065	%%END%%
1066
1067	elif [[ $numprocs != 0 ]]
1068	then
1069	cat > $job_to_send << %%END%%
1070	#!/bin/ksh
1071	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1072	#PBS -l ${qsubmem}=${Memory}gb
1073	#PBS -o $remote_dayfile
1074	#PBS -N palm
1075	#PBS -j o
1076
1077	%%END%%
1078
1079	else
1080	cat > $job_to_send << %%END%%
1081	#!/bin/ksh
1082	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1083	#PBS -o $remote_dayfile
1084	#PBS -j o
1085
1086	%%END%%
1087
1088	fi
1089
1090	elif [[ $remote_host = necriam ]]
1091	then
1092
1093	if (( nodes > 1 ))
1094	then
1095	cat > $job_to_send << %%END%%
1096	#!/bin/ksh
1097	#PBS -b $nodes
1098	#PBS -o $remote_dayfile
1099	#PBS -N $job_name
1100	#PBS -j o
1101	#PBS -v MPIPROGINV=YES
1102
1103	%%END%%
1104
1105	elif [[ $numprocs != 0 ]]
1106	then
1107	cat > $job_to_send << %%END%%
1108	#!/bin/ksh
1109	#PBS -q ${queue}
1110	#PBS -o $remote_dayfile
1111	#PBS -N $job_name
1112	#PBS -j o
1113	#PBS -v MPIPROGINV=YES
1114
1115	%%END%%
1116
1117	else
1118	cat > $job_to_send << %%END%%
1119	#!/bin/ksh
1120	#PBS -o $remote_dayfile
1121	#PBS -j o
1122
1123	%%END%%
1124
1125	fi
1126
1127	elif [[ $remote_host = lctit ]]
1128	then
1129	cat > $job_to_send << %%END%%
1130	#!/bin/ksh
1131
1132	$module_calls
1133
1134	%%END%%
1135
1136	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1137	if [[ $tasks_per_node != $processes_per_node ]]
1138	then
1139	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1140	else
1141	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1142	fi
1143
1144	else
1145
1146	cat > $job_to_send << %%END%%
1147	# @\$-q ${queue}
1148	# @\$-l${qsubtime} $timestring
1149	# @\$-l${qsubmem} ${memory}mb
1150	# @\$-o $remote_dayfile
1151	# @\$-eo
1152
1153	%%END%%
1154
1155	fi
1156
1157
1158	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1159	# BEI EXIT VERANLASSEN
1160	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1161	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1162	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1163	then
1164	echo "set +vx" >> $job_to_send
1165	echo "trap '" >> $job_to_send
1166	echo "set +vx" >> $job_to_send
1167	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec ]]
1168	then
1169	if [[ $remote_host = ibmh ]]
1170	then
1171	return_queue=c1
1172	elif [[ $remote_host = ibmkisti ]]
1173	then
1174	return_queue=class.1-2
1175	elif [[ $remote_host = ibmku ]]
1176	then
1177	return_queue=sdbg2
1178	elif [[ $remote_host = ibms ]]
1179	then
1180	return_queue=p_normal
1181	elif [[ $remote_host = ibmy ]]
1182	then
1183	return_queue=serial
1184	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1185	then
1186	return_queue=serialq
1187	elif [[ $remote_host = necriam ]]
1188	then
1189	return_queue=SP
1190	else
1191	return_queue=unknown
1192	fi
1193
1194	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1195	then
1196
1197	if [[ $remote_host = ibmku ]]
1198	then
1199	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1200	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1201	else
1202	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1203	fi
1204	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1205	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1206	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1207	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1208	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1209	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1210	if [[ $host != "ibmh" ]]
1211	then
1212	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1213	fi
1214	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1215	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1216
1217	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1218	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1219
1220	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1221	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1222	if [[ $remote_host = ibmku ]]
1223	then
1224	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1225	fi
1226	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1227
1228	elif [[ $remote_host = nech ]]
1229	then
1230	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1231	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1232	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1233	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1234	echo "#PBS -j o" >> $job_to_send
1235	echo " " >> $job_to_send
1236	echo "set -x" >> $job_to_send
1237	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1238	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1239	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1240	echo "%%END%%" >> $job_to_send
1241
1242	elif [[ $remote_host = necriam ]]
1243	then
1244	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1245	echo "#PBS -q $return_queue" >> $job_to_send
1246	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1247	echo "#PBS -j o" >> $job_to_send
1248	echo " " >> $job_to_send
1249	echo "set -x" >> $job_to_send
1250	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1251	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1252	echo "%%END%%" >> $job_to_send
1253
1254	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1255	then
1256	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1257	echo "#!/bin/bash" >> $job_to_send
1258	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1259	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1260	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1261	echo "#PBS -l feature=data" >> $job_to_send
1262	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1263	echo "#PBS -j oe" >> $job_to_send
1264	echo " " >> $job_to_send
1265	echo ". /usr/share/modules/init/bash" >> $job_to_send
1266	echo "set -x" >> $job_to_send
1267	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1268	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1269	echo "%%END%%" >> $job_to_send
1270
1271	else
1272
1273	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1274	echo "# @\\\$-q $return_queue" >> $job_to_send
1275	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1276	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1277	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1278	then
1279	echo "# @\$-l mpp_p=0" >> $job_to_send
1280	fi
1281	echo '# @\$-lF 10mb' >> $job_to_send
1282	# echo '# @\$-o /dev/null' >> $job_to_send
1283	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1284	echo '# @\\\$-eo' >> $job_to_send
1285	echo " " >> $job_to_send
1286	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1287	then
1288	echo "set +vx" >> $job_to_send
1289	echo ". .profile" >> $job_to_send
1290	fi
1291	echo "set -x" >> $job_to_send
1292	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1293	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1294	echo "%%END%%" >> $job_to_send
1295	fi
1296
1297	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1298	then
1299	echo "llsubmit scpjob.$kennung" >> $job_to_send
1300	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1301	then
1302	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1303	echo "msub scpjob.$kennung" >> $job_to_send
1304	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1305	then
1306	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1307	elif [[ $remote_host = t3es ]]
1308	then
1309	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1310	else
1311	echo "qsub scpjob.$kennung" >> $job_to_send
1312	fi
1313	if [[ $remote_host != ibmku ]]
1314	then
1315	echo "rm scpjob.$kennung" >> $job_to_send
1316	fi
1317	if [[ $remote_host = nech ]]
1318	then
1319	echo "cd -" >> $job_to_send
1320	fi
1321	else
1322	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1323	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1324	fi
1325	echo "set -x" >> $job_to_send
1326	echo " ' exit" >> $job_to_send
1327	echo "set -x" >> $job_to_send
1328	fi
1329
1330
1331
1332	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1333	cat $file_to_send >> $job_to_send
1334
1335	if [[ $remote_host = ibm ]]
1336	then
1337	echo " " >> $job_to_send
1338	echo "exit" >> $job_to_send
1339	fi
1340
1341	# remove job file
1342	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1343	then
1344	echo " " >> $job_to_send
1345	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1346	fi
1347
1348
1349
1350	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1351	if [[ -z $remote_user ]]
1352	then
1353	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1354	then
1355	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1356	fi
1357	fi
1358
1359
1360
1361	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1362	if [[ $no_submit = false ]]
1363	then
1364	if [[ $remote_host != $local_host ]]
1365	then
1366	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1367	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1368	then
1369	job_catalog_save=$job_catalog
1370	job_catalog=job_queue
1371	elif [[ $remote_host = nech ]]
1372	then
1373	job_catalog_save=$job_catalog
1374	job_catalog=/hpf/b/${remote_user}/job_queue
1375	fi
1376	if [[ $local_host = decalpha ]]
1377	then
1378	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1379	# PASSWORT AB
1380	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1381	elif [[ $remote_host = nech ]]
1382	then
1383	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1384	# TRANSFERIERT WERDEN
1385	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1386	else
1387	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1388	fi
1389	if [[ $? = 1 ]]
1390	then
1391	locat=scp; exit
1392	fi
1393	if [[ $remote_host = ibms ]]
1394	then
1395	job_catalog=$job_catalog_save
1396	fi
1397	[[ $verify = true ]] && printf "\n >>> finished\n"
1398	else
1399	eval job_catalog=$job_catalog
1400	cp $job_to_send ${job_catalog}/$job_on_remhost
1401	fi
1402
1403
1404
1405	# NQS- BZW. LOADLEVELER-JOB STARTEN
1406	if [[ $remote_host != $local_host ]]
1407	then
1408	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1409
1410	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1411	then
1412	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1413	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1414	elif [[ $remote_host = ibmku ]]
1415	then
1416	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1417	else
1418	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1419	fi
1420
1421	[[ $verify = true ]] && printf " >>> o.k.\n"
1422	else
1423	cd $job_catalog
1424	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1425	then
1426	eval $submcom $job_on_remhost
1427	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck \|\| $localhost = lckordi\|\| $localhost = lcyon ]]
1428	then
1429	chmod u+x $job_on_remhost
1430	echo "$submcom $job_on_remhost"
1431	eval $submcom $job_on_remhost
1432	elif [[ $local_host = nech ]]
1433	then
1434	if [[ $queue = default ]]
1435	then
1436	eval $submcom $job_on_remhost
1437	else
1438	eval $submcom -q $queue $job_on_remhost
1439	fi
1440	else
1441	qsub $job_on_remhost
1442	fi
1443
1444	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1445	# only at the end of the job.
1446	if [[ $local_host != lctit && $local_host != ibmku ]]
1447	then
1448	rm $job_on_remhost
1449	fi
1450	cd - > /dev/null
1451	fi
1452	fi
1453
1454
1455
1456	# ABSCHLUSSARBEITEN
1457
1458	if [[ $no_submit = false ]]
1459	then
1460	rm $job_to_send
1461	fi
1462	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |