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source: palm/trunk/SCRIPTS/subjob @ 23

Last change on this file since 23 was 12, checked in by raasch, 18 years ago
breva admitted for subjob
File size: 36.0 KB

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1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0 13/02/07
3
4	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
5	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
6	# Host zurueckgeschickt werden sollen
7
8
9	# letzte Aenderung:
10	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
11	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
12	# 06/02/98 - Siggi - berte validiert
13	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
14	# moeglich
15	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
16	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
17	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
18	# allgemeine Anpassungen fuer ibm-Rechner
19	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
20	# Ruecktransfer des Jobprotokolls fuer diese
21	# Maschine abgeschaltet
22	# 31/10/02 - Siggi - berni validiert
23	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
24	# 08/11/02 - Siggi - quanero validiert
25	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
26	# 23/01/03 - Siggi - hostname nobel changed to nobela
27	# 06/02/03 - Siggi - gregale validated
28	# 12/02/03 - Siggi - orkan and maestro validated
29	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
30	# 12/03/03 - Siggi - nec at DKRZ validated
31	# 13/03/03 - Siggi - new nqs resource variable Memory
32	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
33	# node
34	# 11/04/03 - Siggi - network on ibms has attribute "shared"
35	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
36	# cxxl added to ibmh
37	# 29/08/03 - Siggi - changes in job queues and communication system on
38	# ibms
39	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
40	# 30/10/03 - Siggi - nech is not supported any more
41	# 10/11/03 - Siggi - nech2 renamed to nech
42	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
43	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
44	# 31/03/04 - Siggi - new option -N for node usage
45	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
46	# due to error in ssh installation (otherwise a prompt
47	# for the password appears)
48	# 23/07/04 - Siggi - changes due to the new berni configuration
49	# (federation switch)
50	# 01/09/04 - Gerald new job-classes on hanni
51	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
52	# 23/11/04 - Siggi - new job class cdata on hanni and berni
53	# 03/12/04 - Siggi - notification on ibm switched of in case of
54	# delete_dayfile = true, node usage in cdev set to
55	# shared
56	# 16/02/05 - Gerald hababai validated
57	# 29/03/05 - Micha - new job class channi on hanni
58	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
59	# on ibms
60	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
61	# p_normal
62	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
63	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
64	# "sn_all", new job class cexp
65	# 08/09/05 - Siggi - IP-address of gfdl3 changed
66	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
67	# hurricane (with -X0)
68	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
69	# added
70	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
71	# 09/02/06 - Siggi - ibmy admitted
72	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
73	# 13/04/06 - Siggi - ostria admitted
74	# 18/04/06 - Siggi - new option -O for OpenMP usage
75	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
76	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
77	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
78	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
79	# 28/11/06 - Siggi - levanto admitted
80	# 13/02/07 - Siggi - hpmuk releated code removed
81
82
83	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
84	delete_dayfile=false
85	filetransfer_protocol=scp
86	locat=normal
87	no_default_queue=none
88	no_submit=false
89	job_catalog="~/job_queue"
90	job_name=none
91	local_user=$LOGNAME
92	node_usage=shared
93	numprocs=1
94	punkte="..........................................................."
95	submcom=qsub
96	queue=default
97	remote_host=none
98	remote_user=""
99	verify=true
100
101	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
102	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
103	typeset -L20 spalte1
104	typeset -R40 spalte2
105	typeset -L60 spalte3
106
107
108
109	# FEHLERBEHANDLUNG
110	# BEI EXIT:
111	trap 'if [[ $locat != normal ]]
112	then
113	case $locat in
114	(option) printf "\n --> available optios can be displayed"
115	printf " by typing:"
116	printf "\n \"subjob ?\" \n";;
117	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
118	(*) printf "\n +++ unknown error"
119	printf "\n please inform S. Raasch!\n"
120	esac
121	[[ -f $job_to_send ]] && rm $job_to_send
122	printf "\n\n+++ SUBJOB killed \n\n"
123	fi' exit
124
125
126	# BEI TERMINAL-BREAK:
127	trap '[[ -f $job_to_send ]] && rm $job_to_send
128	printf "\n\n+++ SUBJOB killed \n\n"
129	exit
130	' 2
131
132
133
134
135	# LOKALEN HOSTNAMEN FESTSTELLEN
136	local_host=$(hostname)
137
138
139
140	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
141	# UEBERHAUPT ZULAESSIG IST
142	case $local_host in
143	(atmos) local_addres=172.20.25.35; local_host=lcide;;
144	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
145	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
146	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
147	(cs*) local_addres=136.172.44.131; local_host=nech;;
148	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
149	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
150	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
151	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
152	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
153	(hreg-en0\|hanni-en0) local_addres=130.75.4.10; local_host=ibmh;;
154	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
155	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
156	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
157	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
158	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
159	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
160	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
161	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
162	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
163	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
164	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
165	(*) printf "\n +++ \"$local_host\" unknown";
166	printf "\n please inform S. Raasch!";
167	locat=parameter; exit;;
168	esac
169
170
171
172	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
173	remote_host=$local_host
174
175
176
177
178	# PROZEDUROPTIONEN EINLESEN
179	while getopts :c:dDf:h:m:n:N:O:q:t:T:u:vX: option
180	do
181	case $option in
182	(c) job_catalog=$OPTARG;;
183	(d) delete_dayfile=true;;
184	(D) no_submit=true;;
185	(f) filetransfer_protocol=$OPTARG;;
186	(h) remote_host=$OPTARG;;
187	(m) memory=$OPTARG;;
188	(n) job_name=$OPTARG;;
189	(N) node_usage=$OPTARG;;
190	(O) threads_per_task=$OPTARG;;
191	(q) no_default_queue=$OPTARG;;
192	(t) cputime=$OPTARG;;
193	(T) tasks_per_node=$OPTARG;;
194	(u) remote_user=$OPTARG;;
195	(v) verify=false;;
196	(X) numprocs=$OPTARG;;
197	(\?) printf "\n +++ Option $OPTARG unknown \n";
198	locat=option; exit;;
199	esac
200	done
201
202
203	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
204	shift OPTIND-1; file_to_send=$1
205
206
207	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
208	if [ "$1" = "?" ]
209	then
210	(printf "\n *** subjob can be called as follows:\n"
211	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
212	printf "\n Description of available options:\n"
213	printf "\n Option Description Default-Value"
214	printf "\n -c job-input- and output-catalog ~/job_queue"
215	printf "\n -d no job-protocol will be created ---"
216	printf "\n -D only the job-file will be created ---"
217	printf "\n -f filetransfer protocol scp"
218	printf "\n -h execution host, available hosts: $remote_host"
219	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
220	printf "\n unics"
221	printf "\n -m memory demand per process in MByte ---"
222	printf "\n -n jobname <jobdatei>"
223	printf "\n -O threads per task (for OpenMP usage) 1"
224	printf "\n -q job-queue to be used default"
225	printf "\n -t allowed cpu-time in seconds ---"
226	printf "\n -T tasks per node (on parallel hosts) ---"
227	printf "\n -u username on execution host from .netrc"
228	printf "\n -v no prompt for confirmation ---"
229	printf "\n -X # of processors (on parallel hosts) 1"
230	printf "\n "
231	printf "\n The only possible positional parameter is <jobfile>:"
232	printf "\n The complete NQS-job must be provided here."
233	printf "\n <jobfile>=? creates this outline\n\n") \| more
234	exit
235	fi
236
237
238
239	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
240	if [[ "$file_to_send" = "" ]]
241	then
242	printf "\n +++ job-file missing"
243	locat=parameter; exit
244	else
245	if [[ -f $file_to_send ]]
246	then
247	true
248	else
249	printf "\n +++ job-file: "
250	printf "\n $file_to_send"
251	printf "\n does not exist"
252	locat=parameter; exit
253	fi
254	fi
255
256
257
258	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
259	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
260	if [[ $job_name = none ]]
261	then
262	job_name=$file_to_send
263	fi
264	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
265	then
266	printf "\n +++ job-file name: "
267	printf "\n $job_name"
268	printf "\n must not contain \"/\"-characters"
269	locat=parameter; exit
270	fi
271
272
273
274
275	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
276	# ODER WENN HOST NICHT ANGEGEBEN WURDE
277	if [[ $remote_host = none ]]
278	then
279	printf "\n +++ host missing"
280	locat=option; exit
281	else
282	case $remote_host in
283	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
284	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
285	(ibmh) queue=cpar; remote_addres=130.75.4.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
286	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
287	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
288	(lctit) queue=test; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
289	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
290	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
291	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
292	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
293	locat=parameter; exit;;
294	esac
295	fi
296
297
298	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
299	if [[ $no_default_queue != none ]]
300	then
301	error=false
302	ndq=$no_default_queue
303	case $remote_host in
304	(ibm) case $ndq in
305	(p690_express\|p690_standard\|p690_long) error=false;;
306	(*) error=true;;
307	esac;;
308	(ibmb) case $ndq in
309	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
310	(*) error=true;;
311	esac;;
312	(ibmh) case $ndq in
313	(cdata\|cdev\|cexp\|channi\|cxxl\|c1\|cshare\|csolo\|cspec) error=false;;
314	(*) error=true;;
315	esac;;
316	(ibms) case $ndq in
317	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
318	(*) error=true;;
319	esac;;
320	(ibmy) case $ndq in
321	(parallel) error=false;;
322	(*) error=true;;
323	esac;;
324	(lctit) case $ndq in
325	(cs\|default\|high\|test) error=false;;
326	(*) error=true;;
327	esac;;
328	(t3eb) case $ndq in
329	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
330	(*) error=true;;
331	esac;;
332	(t3eh) case $ndq in
333	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
334	(*) error=true;;
335	esac;;
336	(t3ej2\|t3ej5) case $ndq in
337	(low\|normal\|high) error=false;;
338	(*) error=true;;
339	esac;;
340	(t3es) case $ndq in
341	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
342	(*) error=true;;
343	esac;;
344	(unics) case $ndq in
345	(unics\|ht) error=false;;
346	(*) error=true;;
347	esac;;
348	esac
349	if [[ $error = true ]]
350	then
351	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
352	locat=parameter; exit
353	else
354	queue=$no_default_queue
355	fi
356	fi
357
358
359
360	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
361	if [[ $node_usage != shared && $queue = cdev ]]
362	then
363	node_usage=shared
364	fi
365
366
367
368	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
369	# AUFTEILEN
370	done=false
371	while [[ $done = false ]]
372	do
373	if (( $cputime <= 0 ))
374	then
375	printf "\n +++ wrong cpu-time or cpu-time missing"
376	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
377	printf "\n >>> "
378	read cputime 1>/dev/null 2>&1
379	else
380	done=true
381	fi
382	done
383	if [[ $remote_host = nech ]]
384	then
385	if (( tasks_per_node != 0 ))
386	then
387	(( cputime = cputime * tasks_per_node ))
388	elif [[ $numprocs != 0 ]]
389	then
390	(( cputime = cputime * numprocs ))
391	fi
392	fi
393	(( stunden = cputime / 3600 ))
394	(( resttime = cputime - stunden * 3600 ))
395	(( minuten = resttime / 60 ))
396	(( sekunden = resttime - minuten * 60 ))
397	timestring=${stunden}:${minuten}:${sekunden}
398
399
400
401	# PRUEFEN DER KERNSPEICHERANFORDERUNG
402	done=false
403	while [[ $done = false ]]
404	do
405	if (( memory <= 0 ))
406	then
407	printf "\n +++ wrong memory demand or memory demand missing"
408	printf "\n >>> Please type memory in MByte per process as INTEGER:"
409	printf "\n >>> "
410	read memory 1>/dev/null 2>&1
411	else
412	done=true
413	fi
414	done
415
416	if [[ $remote_host = nech ]]
417	then
418	if (( tasks_per_node != 0 ))
419	then
420	(( Memory = memory * tasks_per_node / 1000 ))
421	elif [[ $numprocs != 0 ]]
422	then
423	(( Memory = memory * numprocs / 1000 ))
424	else
425	(( Memory = memory / 1000 ))
426	fi
427	fi
428
429
430	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
431	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
432	then
433	(( memory = memory * threads_per_task ))
434	fi
435
436
437	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
438	if (( tasks_per_node != 0 ))
439	then
440	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
441	fi
442
443
444
445	# HEADER-AUSGABE
446	if [[ $verify = true ]]
447	then
448	printf "\n\n"
449	printf "#--------------------------------------------------------------# \n"
450	spalte1=SUBJOB;spalte2=$(date)
451	printf "\| $spalte1$spalte2 \| \n"
452	printf "\| \| \n"
453	printf "\| values of parameters/options: \| \n"
454	spalte1=local_host$punkte; spalte2=$punkte$local_host
455	printf "\| $spalte1$spalte2 \| \n"
456	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
457	printf "\| $spalte1$spalte2 \| \n"
458	spalte1=queue$punkte; spalte2=$punkte$queue
459	printf "\| $spalte1$spalte2 \| \n"
460	spalte1=memory$punkte; spalte2="$punkte$memory mb"
461	printf "\| $spalte1$spalte2 \| \n"
462	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
463	printf "\| $spalte1$spalte2 \| \n"
464	spalte1=job_name$punkte; spalte2="$punkte$job_name"
465	printf "\| $spalte1$spalte2 \| \n"
466	printf "#--------------------------------------------------------------# \n\n"
467
468
469	# KONTROLLABFRAGE, OB ALLES O.K.
470	antwort="dummy"
471	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
472	do
473	read antwort?" >>> continue (y/n) ? "
474	done
475	if [[ $antwort = n \|\| $antwort = N ]]
476	then
477	locat=verify; exit
478	fi
479	printf "\n"
480	fi
481
482
483
484	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
485	kennung=$RANDOM
486	job_on_remhost=${job_name}_${kennung}_$local_host
487	job_to_send=job_to_send_$kennung
488	if [[ $delete_dayfile = false ]]
489	then
490	remote_dayfile=${local_host}_${job_name}_result_$kennung
491	local_dayfile=${remote_host}_${job_name}
492	else
493	remote_dayfile=/dev/null
494	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
495	then
496	notification='# @ notification = never'
497	fi
498	fi
499
500
501
502	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
503	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
504	then
505
506	if [[ $remote_host = ibmy ]]
507	then
508	consumable_memory=""
509	else
510	consumable_memory="ConsumableMemory($memory mb)"
511	fi
512	if [[ $queue = cdev ]]
513	then
514	data_limit="# @ data_limit = 1.76gb"
515	network_to_use="# @ network.mpi = sn_all,shared,ip"
516	else
517	if [[ $remote_host = ibms ]]
518	then
519	network_to_use="# @ network.mpi = csss,shared,us"
520	elif [[ $remote_host = ibmy ]]
521	then
522	network_to_use=""
523	else
524	network_to_use="# @ network.mpi = sn_all,shared,us"
525	data_limit="# @ data_limit = 1.76gb"
526	fi
527	fi
528
529	cat > $job_to_send << %%END%%
530	#!/bin/ksh
531
532	# @ job_type = parallel
533	# @ job_name = palm
534	# @ wall_clock_limit = ${timestring},$timestring
535	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
536	# @ output = $remote_dayfile
537	# @ error = $remote_dayfile
538	# @ image_size = 50
539	# @ class = $queue
540	# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes
541	$network_to_use
542	$data_limit
543	$notification
544
545	%%END%%
546
547	if (( nodes > 0 ))
548	then
549
550	cat >> $job_to_send << %%END%%
551	# @ node = $nodes
552	# @ tasks_per_node = $tasks_per_node
553	# @ node_usage = $node_usage
554	# @ queue
555
556	%%END%%
557
558	else
559
560	if [[ $remote_host != ibmy ]]
561	then
562
563	cat >> $job_to_send << %%END%%
564	# @ blocking = unlimited
565	# @ total_tasks = $numprocs
566	# @ node_usage = $node_usage
567	# @ queue
568
569	%%END%%
570
571	else
572
573	cat >> $job_to_send << %%END%%
574	# @ node = 1
575	# @ total_tasks = $numprocs
576	# @ queue
577
578	%%END%%
579
580	fi
581
582	fi
583
584	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
585	then
586
587	cat > $job_to_send << %%END%%
588	#!/bin/ksh
589
590	# @ job_type = serial
591	# @ node_usage = $node_usage
592	# @ job_name = palm
593	# @ wall_clock_limit = ${timestring},$timestring
594	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
595	# @ output = $remote_dayfile
596	# @ error = $remote_dayfile
597	# @ class = $queue
598	$notification
599
600	# @ queue
601
602	%%END%%
603
604	elif [[ $remote_host = nech ]]
605	then
606
607	if (( nodes > 1 ))
608	then
609	cat > $job_to_send << %%END%%
610	#!/bin/ksh
611	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
612	#PBS -l ${qsubmem}=${Memory}gb
613	#PBS -b $nodes
614	#PBS -o $remote_dayfile
615	#PBS -N palm
616	#PBS -j o
617	#PBS -T mpisx
618
619	%%END%%
620
621	elif [[ $numprocs != 0 ]]
622	then
623	cat > $job_to_send << %%END%%
624	#!/bin/ksh
625	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
626	#PBS -l ${qsubmem}=${Memory}gb
627	#PBS -o $remote_dayfile
628	#PBS -N palm
629	#PBS -j o
630
631	%%END%%
632
633	else
634	cat > $job_to_send << %%END%%
635	#!/bin/ksh
636	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
637	#PBS -o $remote_dayfile
638	#PBS -j o
639
640	%%END%%
641
642	fi
643
644	elif [[ $remote_host = lctit ]]
645	then
646	cat > $job_to_send << %%END%%
647	#!/bin/bash
648	#$ -S /bin/bash
649	cd $job_catalog
650	PATH=$job_catalog:${job_catalog}/../pub:\$PATH
651	export PATH
652
653	%%END%%
654
655	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
656	submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
657
658	else
659
660	cat > $job_to_send << %%END%%
661	# @\$-q ${queue}
662	# @\$-l${qsubtime} $timestring
663	# @\$-l${qsubmem} ${memory}mb
664	# @\$-o $remote_dayfile
665	# @\$-eo
666
667	%%END%%
668
669	fi
670
671
672	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
673	# BEI EXIT VERANLASSEN
674	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
675	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
676	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
677	then
678	echo "set +vx" >> $job_to_send
679	echo "trap '" >> $job_to_send
680	echo "set +vx" >> $job_to_send
681	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = nech \|\| $remote_host = lctit ]]
682	then
683	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
684	then
685	return_queue=c1
686	elif [[ $remote_host = ibms ]]
687	then
688	return_queue=p_normal
689	elif [[ $remote_host = ibmy ]]
690	then
691	return_queue=serial
692	elif [[ $remote_host = lctit ]]
693	then
694	return_queue=default
695	elif [[ $remote_host = t3eb ]]
696	then
697	return_queue=berte
698	elif [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
699	then
700	return_queue=normal
701	elif [[ $remote_host = t3es ]]
702	then
703	return_queue=batch
704	else
705	return_queue=unknown
706	fi
707
708	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
709	then
710
711	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
712	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
713	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
714	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
715	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
716	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
717	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
718	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
719	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
720	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
721
722	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
723	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
724
725	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
726	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
727	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
728
729	elif [[ $remote_host = nech ]]
730	then
731	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
732	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
733	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
734	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
735	echo "#PBS -j o" >> $job_to_send
736	echo " " >> $job_to_send
737	echo "set -x" >> $job_to_send
738	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
739	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
740	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
741	echo "%%END%%" >> $job_to_send
742
743	elif [[ $remote_host = lctit ]]
744	then
745	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
746	echo "set -x" >> $job_to_send
747	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
748	echo "cd $job_catalog" >> $job_to_send
749	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
750	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
751	echo "%%END%%" >> $job_to_send
752
753	else
754
755	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
756	echo "# @\\\$-q $return_queue" >> $job_to_send
757	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
758	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
759	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
760	then
761	echo "# @\$-l mpp_p=0" >> $job_to_send
762	fi
763	echo '# @\$-lF 10mb' >> $job_to_send
764	# echo '# @\$-o /dev/null' >> $job_to_send
765	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
766	echo '# @\\\$-eo' >> $job_to_send
767	echo " " >> $job_to_send
768	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
769	then
770	echo "set +vx" >> $job_to_send
771	echo ". .profile" >> $job_to_send
772	fi
773	echo "set -x" >> $job_to_send
774	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
775	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
776	echo "%%END%%" >> $job_to_send
777	fi
778
779	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
780	then
781	echo "llsubmit scpjob.$kennung" >> $job_to_send
782	elif [[ $remote_host = lctit ]]
783	then
784	echo "chmod u+x scpjob.$kennung" >> $job_to_send
785	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
786	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
787	echo "sleep 10" >> $job_to_send
788	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
789	then
790	echo "qsub -J n scpjob.$kennung" >> $job_to_send
791	elif [[ $remote_host = t3es ]]
792	then
793	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
794	else
795	echo "qsub scpjob.$kennung" >> $job_to_send
796	fi
797	echo "rm scpjob.$kennung" >> $job_to_send
798	if [[ $remote_host = nech ]]
799	then
800	echo "cd -" >> $job_to_send
801	fi
802	else
803	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
804	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
805	fi
806	echo "set -x" >> $job_to_send
807	echo " ' exit" >> $job_to_send
808	echo "set -x" >> $job_to_send
809	fi
810
811
812
813	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
814	cat $file_to_send >> $job_to_send
815	if [[ $remote_host = ibm ]]
816	then
817	echo " " >> $job_to_send
818	echo "exit" >> $job_to_send
819	fi
820
821
822
823	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
824	if [[ -z $remote_user ]]
825	then
826	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
827	then
828	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
829	fi
830	fi
831
832
833
834	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
835	if [[ $no_submit = false ]]
836	then
837	if [[ $remote_host != $local_host ]]
838	then
839	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
840	if [[ $filetransfer_protocol = scp ]]
841	then
842	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
843	then
844	job_catalog_save=$job_catalog
845	job_catalog=job_queue
846	elif [[ $remote_host = nech ]]
847	then
848	job_catalog_save=$job_catalog
849	job_catalog=/hpf/b/${remote_user}/job_queue
850	fi
851	if [[ $local_host = decalpha ]]
852	then
853	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
854	# PASSWORT AB
855	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
856	elif [[ $remote_host = nech ]]
857	then
858	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
859	# TRANSFERIERT WERDEN
860	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
861	else
862	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
863	fi
864	if [[ $? = 1 ]]
865	then
866	locat=scp; exit
867	fi
868	if [[ $remote_host = ibms ]]
869	then
870	job_catalog=$job_catalog_save
871	fi
872	else
873	ftpcopy -s -o $remote_addres $job_to_send "$job_catalog" $job_on_remhost
874	if [[ $? = 1 ]]
875	then
876	locat=ftpcopy; exit
877	fi
878	fi
879	[[ $verify = true ]] && printf "\n >>> finished\n"
880	else
881	eval job_catalog=$job_catalog
882	cp $job_to_send ${job_catalog}/$job_on_remhost
883	fi
884
885
886
887	# NQS- BZW. LOADLEVELER-JOB STARTEN
888	if [[ $remote_host != $local_host ]]
889	then
890	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
891	if [[ $filetransfer_protocol = scp ]]
892	then
893	if [[ $remote_host != lctit ]]
894	then
895	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
896	else
897	# TIT ERLAUBT NUR DIE AUSFÜHRUNG GANZ BESTIMMTER KOMMANDOS
898	# MIT SSH, DESHALB AUFRUF PER PIPE
899	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
900	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
901	echo "first try" > send_protocol
902	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
903	do
904	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
905	then
906	printf "\n trying to submit job to TIT cluster..."
907	else
908	printf "\n +++ failed ... trying to submit again ..."
909	fi
910	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
911	cat send_protocol
912	done
913	sleep 10
914	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
915	echo "$submcom $job_on_remhost"
916	rm send_protocol
917	fi
918	else
919	if [[ $remote_host = ibms ]]
920	then
921	password=`cat ~/.netrc \| grep $remote_addres \| awk '{print $6}'`
922	echo "echo \"$remote_user\" " > telnet_script
923	echo "sleep 5" >> telnet_script
924	echo "echo \"$password\" " >> telnet_script
925	echo "sleep 10" >> telnet_script
926	echo "echo \"\" " >> telnet_script
927	echo "sleep 2" >> telnet_script
928	echo "echo \"cd $job_catalog; $submcom $job_on_remhost; rm -rf $job_on_remhost\" " >> telnet_script
929	echo "sleep 10" >> telnet_script
930	echo "echo \"exit\" " >> telnet_script
931
932	chmod u+x telnet_script
933	telnet_script \| telnet $remote_addres 2>&1 \| grep "llsubmit:"
934	rm telnet_script
935	elif [[ $remote_host = t3es ]]
936	then
937	password=`cat ~/.netrc \| grep $remote_addres \| awk '{print $6}'`
938	echo "printf \"$remote_user\\\n\" " > telnet_script
939	echo "sleep 10" >> telnet_script
940	echo "printf \"$password\\\n\" " >> telnet_script
941	echo "sleep 10" >> telnet_script
942	echo "printf \"\\\n\" " >> telnet_script
943	echo "sleep 5" >> telnet_script
944	echo "printf \"\\\n\" " >> telnet_script
945	echo "sleep 5" >> telnet_script
946	echo "printf \"cd $job_catalog; $submcom $job_on_remhost; rm -f $job_on_remhost\\\n\" " >> telnet_script
947	echo "sleep 10" >> telnet_script
948	echo "printf \"exit\\\n\" " >> telnet_script
949
950	chmod u+x telnet_script
951	cat telnet_script
952	telnet_script \| telnet $remote_addres \| grep $remote_user
953	rm telnet_script
954	else
955	remcom.x $remote_addres "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
956	fi
957	fi
958	[[ $verify = true ]] && printf " >>> o.k.\n"
959	else
960	cd $job_catalog
961	if [[ $(echo $local_host \| cut -c1-3) = ibm ]]
962	then
963	eval $submcom $job_on_remhost
964	elif [[ $local_host = lctit ]]
965	then
966	eval $submcom $job_on_remhost
967	echo "$submcom $job_on_remhost"
968	chmod u+x $job_on_remhost
969	sleep 5 # WEIL N1GE IM HINTERGRUND ARBEITET UND DATEI SONST EVTL.
970	# SCHON WIEDER GELOESCT IST
971	elif [[ $local_host = nech ]]
972	then
973	if [[ $queue = default ]]
974	then
975	eval $submcom $job_on_remhost
976	else
977	eval $submcom -q $queue $job_on_remhost
978	fi
979	else
980	qsub $job_on_remhost
981	fi
982	rm $job_on_remhost
983	cd - > /dev/null
984	fi
985	fi
986
987
988
989	# ABSCHLUSSARBEITEN
990
991	if [[ $no_submit = false ]]
992	then
993	rm $job_to_send
994	fi
995	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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