Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1616

Last change on this file since 1616 was 1576, checked in by raasch, 10 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 52.4 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1576 2015-03-27 10:23:30Z suehring $
30	#
31	# 1575 2015-03-27 09:56:27Z raasch
32	# mpp2-queues added to lccrayh
33	#
34	# 1547 2015-01-29 15:09:12Z witha
35	# adjustments for ForWind computing cluster (lcflow)
36	#
37	# 1545 2015-01-29 06:52:23Z heinze
38	# local host name for blizzard further specified
39	#
40	# 1480 2014-10-17 14:41:49Z raasch
41	# adjustments for 2nd stage of HLRNIII
42	#
43	# 1468 2014-09-24 14:06:57Z maronga
44	# Typo removed (addres->address)
45	# Adjustments for lcxe6
46	#
47	# 1452 2014-08-22 09:41:06Z heinze
48	# local hosts for blizzard added
49	#
50	# 1450 2014-08-21 07:31:51Z heinze
51	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
52	#
53	# 1442 2014-07-28 07:09:10Z raasch
54	# HLRN-III (lccrayb/lccrayh) queues adjusted
55	#
56	# 1378 2014-04-28 06:04:58Z raasch
57	# -et option added for lctit
58	#
59	# 1350 2014-04-04 13:01:30Z maronga
60	# location of qsub updated for lcxe6
61	#
62	# 1289 2014-03-04 07:12:34Z raasch
63	# German comments translated to English
64	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
65	#
66	# 1279 2014-01-28 12:10:14Z raasch
67	# node calculation modified due to changes in mrun (tasks_per_node must not be
68	# an integral divisor of numprocs any more)
69	#
70	# 1274 2014-01-09 13:14:54Z heinze
71	# adjustments for lccrayh
72	#
73	# 1266 2013-12-11 12:07:34Z heinze
74	# further adjustments for lccrayb (use msub instead of qsub)
75	#
76	# 1264 2013-12-09 12:46:09Z fricke
77	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
78	#
79	# 1262 2013-12-09 10:57:20Z fricke
80	# further adjustments for lccrayb
81	#
82	# 1260 2013-12-04 12:48:04Z raasch
83	# jaboticaba admitted
84	#
85	# 1255 2013-11-07 14:43:35Z raasch
86	# further adjustments for lccrayb
87	#
88	# 1224 2013-09-16 07:27:23Z raasch
89	# first adjustments for lccrayb
90	#
91	# 1202 2013-07-10 16:22:07Z witha
92	# adjustments for Forwind cluster (lcflow)
93	#
94	# 1199 2013-07-05 14:52:22Z raasch
95	# adjustments for CSC Helsinki (lccrayf)
96	#
97	# use of cluster/express queue enabled (ibmh)
98	# vinessa added (imuk)
99	#
100	# 1103 2013-02-20 02:15:53Z raasch
101	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
102	# instead typeset -L/R),
103	# further adjustments for lckyuh
104	#
105	# 2013-02-10 01:47:43Z raasch
106	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
107	# and for Forwind cluster (lcflow)
108	#
109	# 1094 2013-02-03 01:52:12Z raasch
110	# new option -P for explicit setting of ssh/scp port,
111	# decalpha parts (yonsei) removed
112	#
113	# 2013-02-02 07:06:13Z raasch
114	# adjustments for Kyushu-University computing center (lckyut - tatara)
115	# old changelog messages removed
116	#
117	# 1046 2012-11-09 14:38:45Z maronga
118	# code put under GPL (PALM 3.9)
119	#
120	# 08/07/94 - Siggi - first version finished
121	# 29/06/94 - Siggi - script development started
122	#--------------------------------------------------------------------------------#
123	# subjob - script for automatic generation and submission of batch-job files
124	# for various batch queuing systems
125	#--------------------------------------------------------------------------------#
126
127
128	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
129	delete_dayfile=false
130	email_notification=none
131	group_number=none
132	locat=normal
133	no_default_queue=none
134	no_submit=false
135	job_catalog="~/job_queue"
136	job_name=none
137	local_user=$LOGNAME
138	node_usage=shared
139	numprocs=0
140	punkte="..........................................................."
141	submcom=qsub
142	queue=default
143	remote_host=none
144	remote_user=""
145	verify=true
146
147	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
148	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
149
150
151
152	# ERROR HANDLING
153	# IN CASE OF EXIT:
154	trap 'if [[ $locat != normal ]]
155	then
156	case $locat in
157	(option) printf "\n --> available optios can be displayed"
158	printf " by typing:"
159	printf "\n \"subjob ?\" \n";;
160	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
161	(*) printf "\n +++ unknown error"
162	printf "\n please inform S. Raasch!\n"
163	esac
164	[[ -f $job_to_send ]] && rm $job_to_send
165	printf "\n\n+++ SUBJOB killed \n\n"
166	fi' exit
167
168
169	# IN CASE OF TERMINAL-BREAK:
170	trap '[[ -f $job_to_send ]] && rm $job_to_send
171	printf "\n\n+++ SUBJOB killed \n\n"
172	exit
173	' 2
174
175
176
177
178	# DETERMINE NAME OF LOCAL HOST
179	local_host=$(hostname)
180
181
182
183	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
184	# IS ADMITTED AT ALL)
185	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
186	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
187	case $local_host in
188	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
189	(atmos) local_address=172.20.25.35; local_host=lcide;;
190	(austru) local_address=130.75.105.128; local_host=lcmuk;;
191	(autan) local_address=130.75.105.57; local_host=lcmuk;;
192	(bora) local_address=130.75.105.103; local_host=lcmuk;;
193	(b04*) local_address=133.5.4.33; local_host=lckyuh;;
194	(blizzard1\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.15; local_host=ibmh;;
195	(blizzard2\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.16; local_host=ibmh;;
196	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
197	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
198	(breva) local_address=130.75.105.98; local_host=lcmuk;;
199	(buran) local_address=130.75.105.58; local_host=lcmuk;;
200	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
201	(climate*) local_address=165.132.26.68; local_host=lcyon;;
202	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
203	(cs*) local_address=136.172.44.131; local_host=nech;;
204	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
205	(flow01) local_address=10.141.255.71; local_host=lcflow;;
206	(flow02) local_address=10.141.255.72; local_host=lcflow;;
207	(node*) local_address=165.132.26.61 local_host=lck;;
208	# (node*) local_address=210.219.61.8 local_host=lckordi;;
209	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
210	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
211	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
212	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
213	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
214	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
215	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
216	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
217	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
218	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
219	(sno) local_address=130.75.105.113; local_host=lcmuk;;
220	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
221	(login*) local_address=118.128.66.223; local_host=lckiaps;;
222	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
223	(meller) local_address=134.106.74.155; local_host=lcfor;;
224	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
225	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
226	(nobel*) local_address=150.183.5.101; local_host=ibms;;
227	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
228	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
229	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
230	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
231	(pingui) local_address=134.106.74.118; local_host=lcfor;;
232	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
233	(rte*) local_address=133.5.185.60; local_host=lcrte;;
234	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
235	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
236	(solano) local_address=130.75.105.110; local_host=lcmuk;;
237	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
238	(t2a*) local_address=10.1.6.165; local_host=lctit;;
239	(urban*) local_address=147.46.30.151 local_host=lcsb;;
240	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
241	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
242	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
243	(*) printf "\n +++ \"$local_host\" unknown";
244	printf "\n please contact the PALM group at IMUK";
245	locat=parameter; exit;;
246	esac
247
248
249
250	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
251	remote_host=$local_host
252
253
254
255
256	# READ THE SHELLSCRIPT-OPTIONS
257	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
258	do
259	case $option in
260	(c) job_catalog=$OPTARG;;
261	(d) delete_dayfile=true;;
262	(D) no_submit=true;;
263	(e) email_notification=$OPTARG;;
264	(g) group_number=$OPTARG;;
265	(h) remote_host=$OPTARG;;
266	(m) memory=$OPTARG;;
267	(n) job_name=$OPTARG;;
268	(N) node_usage=$OPTARG;;
269	(O) threads_per_task=$OPTARG;;
270	(P) scp_port=$OPTARG;;
271	(q) no_default_queue=$OPTARG;;
272	(t) cputime=$OPTARG;;
273	(T) tasks_per_node=$OPTARG;;
274	(u) remote_user=$OPTARG;;
275	(v) verify=false;;
276	(X) numprocs=$OPTARG;;
277	(\?) printf "\n +++ Option $OPTARG unknown \n";
278	locat=option; exit;;
279	esac
280	done
281
282
283	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
284	(( to_shift = $OPTIND - 1 ))
285	shift $to_shift; file_to_send=$1
286
287
288	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
289	if [ "$1" = "?" ]
290	then
291	(printf "\n *** subjob can be called as follows:\n"
292	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
293	printf "\n Description of available options:\n"
294	printf "\n Option Description Default-Value"
295	printf "\n -c job-input- and output-catalog ~/job_queue"
296	printf "\n -d no job-protocol will be created ---"
297	printf "\n -D only the job-file will be created ---"
298	printf "\n -h execution host, available hosts: $remote_host"
299	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
300	printf "\n lckiaps, lctit, nech"
301	printf "\n -m memory demand per process in MByte ---"
302	printf "\n -n jobname <jobdatei>"
303	printf "\n -O threads per task (for OpenMP usage) 1"
304	printf "\n -P ssh/scp port default port"
305	printf "\n -q job-queue to be used default"
306	printf "\n -t allowed cpu-time in seconds ---"
307	printf "\n -T tasks per node (on parallel hosts) ---"
308	printf "\n -u username on execution host from .netrc"
309	printf "\n -v no prompt for confirmation ---"
310	printf "\n -X # of processors (on parallel hosts) 1"
311	printf "\n "
312	printf "\n The only possible positional parameter is <jobfile>:"
313	printf "\n The complete NQS-job must be provided here."
314	printf "\n <jobfile>=? creates this outline\n\n") \| more
315	exit
316	fi
317
318
319
320	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
321	if [[ "$file_to_send" = "" ]]
322	then
323	printf "\n +++ job-file missing"
324	locat=parameter; exit
325	else
326	if [[ -f $file_to_send ]]
327	then
328	true
329	else
330	printf "\n +++ job-file: "
331	printf "\n $file_to_send"
332	printf "\n does not exist"
333	locat=parameter; exit
334	fi
335	fi
336
337
338
339	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
340	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
341	if [[ $job_name = none ]]
342	then
343	job_name=$file_to_send
344	fi
345	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
346	then
347	printf "\n +++ job-file name: "
348	printf "\n $job_name"
349	printf "\n must not contain \"/\"-characters"
350	locat=parameter; exit
351	fi
352
353
354
355
356	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
357	# OR IF NO HOST HAS BEEN GIVEN
358	if [[ $remote_host = none ]]
359	then
360	printf "\n +++ host missing"
361	locat=option; exit
362	else
363	case $remote_host in
364	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
365	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
366	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
367	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
368	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
369	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom=/opt/moab/default/bin/msub;;
370	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
371	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
372	(lcflow) remote_address=10.140.1.72; submcom=qsub;;
373	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
374	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
375	(lckiaps) remote_address=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
376	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
377	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
378	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
379	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
380	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
381	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
382	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
383	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
384	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_address=136.172.44.147; submcom="/usr/local/bin/qsub";;
385	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
386	locat=parameter; exit;;
387	esac
388	fi
389
390
391	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
392	if [[ $no_default_queue != none ]]
393	then
394	error=false
395	ndq=$no_default_queue
396	case $remote_host in
397	(ibm) case $ndq in
398	(p690_express\|p690_standard\|p690_long) error=false;;
399	(*) error=true;;
400	esac;;
401	(ibmh) case $ndq in
402	(cluster\|express) error=false;;
403	(*) error=true;;
404	esac;;
405	(ibmkisti) case $ndq in
406	(class.32plus\|class.1-2\|class.2-32) error=false;;
407	(*) error=true;;
408	esac;;
409	(ibmku) case $ndq in
410	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
411	(*) error=true;;
412	esac;;
413	(ibms) case $ndq in
414	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
415	(*) error=true;;
416	esac;;
417	(lccrayb) case $ndq in
418	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
419	(*) error=true;;
420	esac;;
421	(lccrayh) case $ndq in
422	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
423	(*) error=true;;
424	esac;;
425	(lccrayf) case $ndq in
426	(usup\|test*\|small\|large) error=false;;
427	(*) error=true;;
428	esac;;
429	(lcflow) case $ndq in
430	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q\|cfd_ivy_shrt.q) error=false;;
431	(*) error=true;;
432	esac;;
433	(lckiaps) case $ndq in
434	(express\|normal) error=false;;
435	(*) error=true;;
436	esac;;
437	(lckyoto) case $ndq in
438	(eh\|ph) error=false;;
439	(*) error=true;;
440	esac;;
441	(lckyuh) case $ndq in
442	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
443	(*) error=true;;
444	esac;;
445	(lckyut) case $ndq in
446	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
447	(*) error=true;;
448	esac;;
449	(lctit) case $ndq in
450	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
451	(*) error=true;;
452	esac;;
453	(t3eb) case $ndq in
454	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
455	(*) error=true;;
456	esac;;
457	(t3eh) case $ndq in
458	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
459	(*) error=true;;
460	esac;;
461	(t3ej2\|t3ej5) case $ndq in
462	(low\|normal\|high) error=false;;
463	(*) error=true;;
464	esac;;
465	(t3es) case $ndq in
466	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
467	(*) error=true;;
468	esac;;
469	esac
470	if [[ $error = true ]]
471	then
472	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
473	locat=parameter; exit
474	else
475	queue=$no_default_queue
476	fi
477	fi
478
479
480
481	# CHECK THE CPU-TIME
482	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
483	done=false
484	while [[ $done = false ]]
485	do
486	if (( $cputime <= 0 ))
487	then
488	printf "\n +++ wrong cpu-time or cpu-time missing"
489	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
490	printf "\n >>> "
491	read cputime 1>/dev/null 2>&1
492	else
493	done=true
494	fi
495	done
496	if [[ $remote_host = nech ]]
497	then
498	if (( tasks_per_node != 0 ))
499	then
500	(( cputime = cputime * tasks_per_node ))
501	elif [[ $numprocs != 0 ]]
502	then
503	(( cputime = cputime * numprocs ))
504	fi
505	fi
506	(( stunden = cputime / 3600 ))
507	(( resttime = cputime - stunden * 3600 ))
508	(( minuten = resttime / 60 ))
509	(( sekunden = resttime - minuten * 60 ))
510	timestring=${stunden}:${minuten}:${sekunden}
511
512
513
514	# CHECK THE MEMORY DEMAND
515	done=false
516	while [[ $done = false ]]
517	do
518	if (( memory <= 0 ))
519	then
520	printf "\n +++ wrong memory demand or memory demand missing"
521	printf "\n >>> Please type memory in MByte per process as INTEGER:"
522	printf "\n >>> "
523	read memory 1>/dev/null 2>&1
524	else
525	done=true
526	fi
527	done
528
529	if [[ $remote_host = nech ]]
530	then
531	if (( tasks_per_node != 0 ))
532	then
533	(( Memory = memory * tasks_per_node / 1000 ))
534	elif [[ $numprocs != 0 ]]
535	then
536	(( Memory = memory * numprocs / 1000 ))
537	else
538	(( Memory = memory / 1000 ))
539	fi
540	elif [[ $remote_host = lctit ]]
541	then
542	(( Memory = memory * tasks_per_node / 1000 ))
543	fi
544
545
546	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
547	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
548	then
549	(( memory = memory * threads_per_task ))
550	fi
551
552
553	# CALCULATE NUMBER OF REQUIRED NODES
554	if (( tasks_per_node != 0 ))
555	then
556	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
557	fi
558
559
560	# CALCULATE NUMBER OF PROCESSES PER NODE
561	(( processes_per_node = tasks_per_node * threads_per_task ))
562
563
564	# CALCULATE NUMBER OF MPI TASKS
565	(( mpi_tasks = numprocs / threads_per_task ))
566
567
568	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
569	if [[ "$scp_port" != "" ]]
570	then
571	PORTOPT="-P $scp_port"
572	SSH_PORTOPT="-p $scp_port"
573	fi
574
575
576	# HEADER-OUTPUT
577	if [[ $verify = true ]]
578	then
579	printf "\n\n"
580	printf "#--------------------------------------------------------------# \n"
581	spalte1=SUBJOB;spalte2=$(date)
582	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
583	printf "\| \| \n"
584	printf "\| values of parameters/options: \| \n"
585	spalte1=$(echo local_host$punkte \| cut -c-20)
586	spalte2=$punkte$local_host
587	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
588	spalte1=$(echo remote_host$punkte \| cut -c-20)
589	spalte2=$punkte$remote_host
590	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
591	spalte1=$(echo queue$punkte \| cut -c-20)
592	spalte2=$punkte$queue
593	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
594	spalte1=$(echo memory$punkte \| cut -c-20)
595	spalte2="$punkte$memory mb"
596	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
597	spalte1=$(echo cputime$punkte \| cut -c-20)
598	spalte2="$punkte$cputime sec"
599	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
600	spalte1=$(echo job_name$punkte \| cut -c-20)
601	spalte2="$punkte$job_name"
602	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
603	printf "#--------------------------------------------------------------# \n\n"
604
605
606	# QUERY CHECK
607	antwort="dummy"
608	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
609	do
610	read antwort?" >>> continue (y/n) ? "
611	done
612	if [[ $antwort = n \|\| $antwort = N ]]
613	then
614	locat=verify; exit
615	fi
616	printf "\n"
617	fi
618
619
620
621	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
622	identifier=$RANDOM
623	job_on_remhost=${job_name}_${identifier}_$local_host
624	job_to_send=job_to_send_$identifier
625	if [[ $delete_dayfile = false ]]
626	then
627	remote_dayfile=${local_host}_${job_name}_result_$identifier
628	local_dayfile=${remote_host}_${job_name}
629	else
630	remote_dayfile=/dev/null
631	fi
632
633
634
635	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
636	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
637	then
638
639	# GENERAL LOADLEVELER SETTINGS
640	execute_in_shell="#!/bin/ksh"
641	use_shell="# @ shell = /bin/ksh"
642	consumable_memory="ConsumableMemory($memory mb)"
643	class="# @ class = $queue"
644	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
645	network_to_use="# @ network.mpi = sn_all,shared,us"
646	data_limit="# @ data_limit = 1.76gb"
647	image_size="# @ image_size = 50"
648	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
649
650	if [[ $email_notification = none ]]
651	then
652	notify_user=""
653	else
654	notify_user="# @ notify_user = $email_notification"
655	if [[ $delete_dayfile = true ]]
656	then
657	notification='# @ notification = never'
658	fi
659	fi
660
661	if [[ $remote_host = ibmh ]]
662	then
663	data_limit=""
664	network_to_use=""
665	class="# @ class = $queue"
666	environment=""
667	rset="# @ rset = RSET_MCM_AFFINITY"
668	task_affinity="# @ task_affinity = core(1)"
669	elif [[ $remote_host = ibmkisti ]]
670	then
671	network_to_use="# @ network.MPI = sn_all,shared,US"
672	wall_clock_limit="# @ wall_clock_limit = $timestring"
673	if [[ $threads_per_task = 1 ]]
674	then
675	rset="# @ rset = RSET_MCM_AFFINITY"
676	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
677	fi
678	environment=""
679	use_shell=""
680	data_limit=""
681	image_size=""
682	elif [[ $remote_host = ibmku ]]
683	then
684	execute_in_shell="#!/usr/bin/ksh"
685	use_shell="# @ shell = /usr/bin/ksh"
686	consumable_memory=""
687	environment=""
688	network_to_use="# @ network.mpi = sn_all,shared,us"
689	data_limit=""
690	image_size=""
691	elif [[ $remote_host = ibms ]]
692	then
693	network_to_use="# @ network.mpi = csss,shared,us"
694	fi
695
696	cat > $job_to_send << %%END%%
697	$execute_in_shell
698	$use_shell
699
700	# @ job_type = parallel
701	# @ job_name = $job_name
702	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
703	# @ output = $remote_dayfile
704	# @ error = $remote_dayfile
705	$wall_clock_limit
706	$image_size
707	$class
708	$environment
709	$network_to_use
710	$data_limit
711	$rset
712	$mcm_affinity_options
713	$task_affinity
714	$notification
715	$notify_user
716
717	%%END%%
718
719	if (( nodes > 0 ))
720	then
721
722	if [[ $remote_host != ibmkisti ]]
723	then
724
725	cat >> $job_to_send << %%END%%
726	# @ node = $nodes
727	# @ tasks_per_node = $processes_per_node
728	# @ node_usage = $node_usage
729	# @ queue
730
731	%%END%%
732
733	else
734
735	cat >> $job_to_send << %%END%%
736	# @ total_tasks = $mpi_tasks
737	# @ blocking = unlimited
738	# @ queue
739
740	%%END%%
741
742	fi
743
744	else
745
746	cat >> $job_to_send << %%END%%
747	# @ blocking = unlimited
748	# @ total_tasks = $numprocs
749	# @ node_usage = $node_usage
750	# @ queue
751
752	%%END%%
753
754	fi
755
756	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
757	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
758	then
759	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
760	fi
761
762	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
763	then
764
765	cat > $job_to_send << %%END%%
766	#!/bin/ksh
767
768	# @ job_type = serial
769	# @ node_usage = $node_usage
770	# @ job_name = palm
771	# @ wall_clock_limit = ${timestring},$timestring
772	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
773	# @ output = $remote_dayfile
774	# @ error = $remote_dayfile
775	$class
776	$notification
777
778	# @ queue
779
780	%%END%%
781
782	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
783	then
784
785	if [[ "$feature" != "" ]]
786	then
787	featuredir="#PBS -l feature=$feature"
788	fi
789
790	if [[ $numprocs != 0 ]]
791	then
792	cat > $job_to_send << %%END%%
793	#!/bin/bash
794	#PBS -N $job_name
795	#PBS -l walltime=$timestring
796	#PBS -l nodes=$nodes:ppn=$processes_per_node
797	#PBS -o $remote_dayfile
798	#PBS -j oe
799	#PBS -q $queue
800	$featuredir
801
802	$module_calls
803
804	%%END%%
805
806	else
807
808	continue
809
810	fi
811
812	elif [[ $remote_host = lccrayf ]]
813	then
814
815	if [[ $numprocs != 0 ]]
816	then
817	cat > $job_to_send << %%END%%
818	#!/bin/bash -l
819	#SBATCH -J $job_name
820	#SBATCH -t $timestring
821	#SBATCH -N $nodes
822	#SBATCH --ntasks-per-node=$processes_per_node
823	#SBATCH -p $queue
824	#SBATCH -o $remote_dayfile
825	#SBATCH -e $remote_dayfile
826
827	$init_cmds
828	$module_calls
829
830	%%END%%
831
832	else
833	cat > $job_to_send << %%END%%
834	#!/bin/bash -l
835	#SBATCH -J $job_name
836	#SBATCH -t $timestring
837	#SBATCH -l ncpus=1
838	#SBATCH -l pmem=${memory}mb
839	#SBATCH -m abe
840	#SBATCH -o $remote_dayfile
841	#SBATCH -e $remote_dayfile
842
843	$init_cmds
844	$module_calls
845
846	%%END%%
847
848	fi
849
850	elif [[ $remote_host = lcflow ]]
851	then
852	if [[ $numprocs != 0 ]]
853	then
854	pe_set="#$ -pe impi $numprocs"
855	else
856	pe_set="#$ -pe impi 1"
857	fi
858	if [[ $queue = default ]]
859	then
860	queue_set=""
861	else
862	queue_set="#$ -q $queue"
863	fi
864	[[ "$disc_space" = "" ]] && disc_space=50
865
866	cat > $job_to_send << %%END%%
867	#!/bin/bash
868	#$ -S /bin/bash
869	#$ -N $job_name
870	#$ -cwd
871	#$ -l h_rt=$timestring
872	#$ -l h_vmem=${memory}M
873	#$ -o $remote_dayfile
874	#$ -j y
875	$pe_set
876	#$ -R y
877	#$ -l h_fsize=${disc_space}G
878	$queue_set
879
880	%%END%%
881
882	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
883	then
884
885	if [[ $numprocs != 0 ]]
886	then
887	cat > $job_to_send << %%END%%
888	#!/bin/ksh
889	#PBS -N $job_name
890	#PBS -l walltime=$timestring
891	#PBS -l ncpus=$numprocs
892	#PBS -l pmem=${memory}mb
893	#PBS -o $remote_dayfile
894	#PBS -l nodes=$nodes:ppn=${processes_per_node}
895	#PBS -j oe
896
897	mpd &
898
899	%%END%%
900
901	else
902	cat > $job_to_send << %%END%%
903	#!/bin/ksh
904	#PBS -N $job_name
905	#PBS -l walltime=$timestring
906	#PBS -l ncpus=1
907	#PBS -l pmem=${memory}mb
908	#PBS -o $remote_dayfile
909	#PBS -j oe
910
911	%%END%%
912
913	fi
914
915	elif [[ $remote_host = lckiaps ]]
916	then
917
918	if [[ $numprocs != 0 ]]
919	then
920	cat > $job_to_send << %%END%%
921	#!/bin/ksh
922	#PBS -N $job_name
923	#PBS -l walltime=$timestring
924	#PBS -l select=1:ncpus=$numprocs
925	#PBS -l pmem=${memory}mb
926	#PBS -q $queue
927	#PBS -o $remote_dayfile
928	#PBS -j oe
929	#PBS -V
930
931	%%END%%
932
933	else
934	cat > $job_to_send << %%END%%
935	#!/bin/ksh
936	#PBS -N $job_name
937	#PBS -l walltime=$timestring
938	#PBS -l ncpus=1
939	#PBS -l pmem=${memory}mb
940	#PBS -o $remote_dayfile
941	#PBS -j oe
942
943	%%END%%
944
945	fi
946
947	elif [[ $remote_host = lcyon ]]
948	then
949
950	if [[ $numprocs != 0 ]]
951	then
952	cat > $job_to_send << %%END%%
953	#!/bin/ksh
954	#PBS -N $job_name
955	#PBS -l walltime=$timestring
956	#PBS -l ncpus=$numprocs
957	#PBS -l pmem=${memory}mb
958	#PBS -o $remote_dayfile
959	#PBS -j oe
960
961	%%END%%
962
963	else
964	cat > $job_to_send << %%END%%
965	#!/bin/ksh
966	#PBS -N $job_name
967	#PBS -l walltime=$timestring
968	#PBS -l ncpus=1
969	#PBS -l pmem=${memory}mb
970	#PBS -o $remote_dayfile
971	#PBS -j oe
972
973	%%END%%
974
975	fi
976
977	elif [[ $remote_host = lcxe6 ]]
978	then
979
980	if [[ $numprocs != 0 ]]
981	then
982	cat > $job_to_send << %%END%%
983	#!/bin/ksh
984	#PBS -S /bin/ksh
985	#PBS -N $job_name
986	#PBS -A $project_account
987	#PBS -j oe
988	#PBS -l walltime=$timestring
989	#PBS -l mppwidth=${numprocs}
990	#PBS -l mppnppn=${processes_per_node}
991	#PBS -m abe
992	#PBS -o $remote_dayfile
993	$email_directive
994
995	$init_cmds
996	$module_calls
997
998	%%END%%
999
1000	else
1001	cat > $job_to_send << %%END%%
1002	#!/bin/ksh
1003	#PBS -S /bin/ksh
1004	#PBS -N $job_name
1005	#PBS -A $project_account
1006	#PBS -j oe
1007	#PBS -l walltime=$timestring
1008	#PBS -l ncpus=1
1009	#PBS -l pmem=${memory}mb
1010	#PBS -m abe
1011	$email_directive
1012	#PBS -o $remote_dayfile
1013
1014	$init_cmds
1015	$module_calls
1016
1017	%%END%%
1018
1019	fi
1020
1021	elif [[ $remote_host = lckyoto ]]
1022	then
1023
1024	cat > $job_to_send << %%END%%
1025	#!/bin/ksh
1026	# @\$-o $remote_dayfile
1027	# @\$-eo -oi
1028	# @\$-lP 16
1029	# @\$-lp 1
1030	# @\$-lm 28gb -llm unlimited -ls unlimited
1031	# @\$-q $queue
1032	# @\$-Pvn abs_pack
1033	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1034	#. /thin/local/etc/setprofile/intel-11.0.sh
1035	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1036	. ~/.myprofile
1037	#. /home2/t/t51254/palm/current_version/myprofile
1038	#. /thin/apps/pgi/mpi.sh
1039	#
1040	env
1041	#
1042	set -x
1043
1044	%%END%%
1045
1046	elif [[ $remote_host = lcxt5m ]]
1047	then
1048
1049	if [[ $numprocs != 0 ]]
1050	then
1051	cat > $job_to_send << %%END%%
1052	#!/bin/ksh
1053	#PBS -S /bin/ksh
1054	#PBS -N $job_name
1055	#PBS -j oe
1056	#PBS -l walltime=$timestring
1057	#PBS -l mppwidth=${numprocs}
1058	#PBS -l mppnppn=${processes_per_node}
1059	#PBS -m abe
1060	#PBS -o $remote_dayfile
1061
1062	$init_cmds
1063	$module_calls
1064
1065	%%END%%
1066
1067	else
1068	cat > $job_to_send << %%END%%
1069	#!/bin/ksh
1070	#PBS -S /bin/ksh
1071	#PBS -N $job_name
1072	#PBS -j oe
1073	#PBS -l walltime=$timestring
1074	#PBS -l ncpus=1
1075	#PBS -l pmem=${memory}mb
1076	#PBS -m abe
1077	#PBS -o $remote_dayfile
1078
1079	$init_cmds
1080	$module_calls
1081
1082	%%END%%
1083
1084	fi
1085
1086	elif [[ $remote_host = lckyuh ]]
1087	then
1088	cat > $job_to_send << %%END%%
1089	#!/bin/bash
1090	#PJM -L "rscgrp=$queue"
1091	#PJM -L "node=$nodes"
1092	#PJM --mpi "proc=$numprocs"
1093	#PJM -L "elapse=$timestring"
1094	#PJM -o $remote_dayfile
1095	#PJM -j
1096	#PJM -X
1097	#PJM --no-stging
1098
1099	export LANG=en_US.UTF-8
1100	%%END%%
1101
1102	elif [[ $remote_host = lckyut ]]
1103	then
1104	cat > $job_to_send << %%END%%
1105	#!/bin/bash
1106	#PJM -L "rscgrp=$queue"
1107	#PJM -L "vnode=$numprocs"
1108	#PJM -L "vnode-core=1"
1109	#PJM -L "elapse=$timestring"
1110	#PJM --mpi proc=$numprocs
1111	#PJM -o $remote_dayfile
1112	#PJM -j
1113	#PJM -X
1114	#PJM --no-stging
1115
1116	export LANG=en_US.UTF-8
1117	%%END%%
1118
1119	elif [[ $remote_host = nech ]]
1120	then
1121
1122	if (( nodes > 1 ))
1123	then
1124	cat > $job_to_send << %%END%%
1125	#!/bin/ksh
1126	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1127	#PBS -l ${qsubmem}=${Memory}gb
1128	#PBS -b $nodes
1129	#PBS -o $remote_dayfile
1130	#PBS -N palm
1131	#PBS -j o
1132	#PBS -T mpisx
1133
1134	%%END%%
1135
1136	elif [[ $numprocs != 0 ]]
1137	then
1138	cat > $job_to_send << %%END%%
1139	#!/bin/ksh
1140	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1141	#PBS -l ${qsubmem}=${Memory}gb
1142	#PBS -o $remote_dayfile
1143	#PBS -N palm
1144	#PBS -j o
1145
1146	%%END%%
1147
1148	else
1149	cat > $job_to_send << %%END%%
1150	#!/bin/ksh
1151	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1152	#PBS -o $remote_dayfile
1153	#PBS -j o
1154
1155	%%END%%
1156
1157	fi
1158
1159	elif [[ $remote_host = lctit ]]
1160	then
1161	cat > $job_to_send << %%END%%
1162	#!/bin/ksh
1163	$init_cmds
1164	$module_calls
1165
1166	%%END%%
1167
1168	# SET OPTIONS FOR SUBMIT-COMMAND
1169	if [[ $tasks_per_node != $processes_per_node ]]
1170	then
1171	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1172	else
1173	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1174	fi
1175
1176	else
1177
1178	cat > $job_to_send << %%END%%
1179	# @\$-q ${queue}
1180	# @\$-l${qsubtime} $timestring
1181	# @\$-l${qsubmem} ${memory}mb
1182	# @\$-o $remote_dayfile
1183	# @\$-eo
1184
1185	%%END%%
1186
1187	fi
1188
1189
1190	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1191	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1192	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1193	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1194	then
1195	echo "set +vx" >> $job_to_send
1196	echo "trap '" >> $job_to_send
1197	echo "set +vx" >> $job_to_send
1198	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 ]]
1199	then
1200	if [[ $remote_host = ibmh ]]
1201	then
1202	return_queue=c1
1203	elif [[ $remote_host = ibmkisti ]]
1204	then
1205	return_queue=class.1-2
1206	elif [[ $remote_host = ibmku ]]
1207	then
1208	return_queue=sdbg2
1209	elif [[ $remote_host = ibms ]]
1210	then
1211	return_queue=p_normal
1212	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1213	then
1214	return_queue=dataq
1215	elif [[ $remote_host = lcxe6 ]]
1216	then
1217	return_queue=debug
1218	elif [[ $remote_host = lckiaps ]]
1219	then
1220	return_queue=express
1221	elif [[ $remote_host = lckyuh ]]
1222	then
1223	return_queue=cx-single
1224	elif [[ $remote_host = lckyut ]]
1225	then
1226	return_queue=cx-single
1227	else
1228	return_queue=unknown
1229	fi
1230
1231	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1232	then
1233
1234	if [[ $remote_host = ibmku ]]
1235	then
1236	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1237	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1238	else
1239	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1240	fi
1241	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1242	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1243	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1244	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1245	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1246	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1247	if [[ $host != "ibmh" ]]
1248	then
1249	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1250	fi
1251	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1252	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1253
1254	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1255	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1256
1257	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1258	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1259	if [[ $remote_host = ibmku ]]
1260	then
1261	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1262	fi
1263	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1264
1265	elif [[ $remote_host = nech ]]
1266	then
1267	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1268	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1269	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1270	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1271	echo "#PBS -j o" >> $job_to_send
1272	echo " " >> $job_to_send
1273	echo "set -x" >> $job_to_send
1274	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1275	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1276	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1277	echo "%%END%%" >> $job_to_send
1278
1279	elif [[ $remote_host = lckyuh ]]
1280	then
1281	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1282	echo "#!/bin/bash" >> $job_to_send
1283	echo "#PJM -L \"node=1\"" >> $job_to_send
1284	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1285	echo "#PJM --no-stging" >> $job_to_send
1286	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1287	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1288	echo "#PJM -j" >> $job_to_send
1289	echo " " >> $job_to_send
1290	echo "export LANG=en_US.UTF-8" >> $job_to_send
1291	echo "set -x" >> $job_to_send
1292	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1293	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1294	echo "%%END%%" >> $job_to_send
1295
1296	elif [[ $remote_host = lckyut ]]
1297	then
1298	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1299	echo "#!/bin/bash" >> $job_to_send
1300	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1301	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1302	echo "#PJM --no-stging" >> $job_to_send
1303	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1304	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1305	echo "#PJM -j" >> $job_to_send
1306	echo " " >> $job_to_send
1307	echo "export LANG=en_US.UTF-8" >> $job_to_send
1308	echo "set -x" >> $job_to_send
1309	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1310	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1311	echo "%%END%%" >> $job_to_send
1312
1313	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1314	then
1315	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1316	echo "#!/bin/bash" >> $job_to_send
1317	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1318	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1319	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1320	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1321	echo "#PBS -j oe" >> $job_to_send
1322	echo " " >> $job_to_send
1323	echo "set -x" >> $job_to_send
1324	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1325	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1326	echo "%%END%%" >> $job_to_send
1327
1328	elif [[ $remote_host = lcflow ]]
1329	then
1330	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1331	echo "#!/bin/bash" >> $job_to_send
1332	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1333	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1334	echo "SGEPREFIX -cwd" >> $job_to_send
1335	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1336	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1337	echo "SGEPREFIX -j y" >> $job_to_send
1338	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1339	echo " " >> $job_to_send
1340	echo "set -x" >> $job_to_send
1341	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1342	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1343	echo "" >> $job_to_send
1344	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1345	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1346	echo "rm -f scpjob.${identifier}" >> $job_to_send
1347	echo "%%END%%" >> $job_to_send
1348	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1349	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1350	elif [[ $remote_host = lcxe6 ]]
1351	then
1352	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1353	echo "#!/bin/ksh" >> $job_to_send
1354	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1355	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1356	echo "#PBS -A $project_account" >> $job_to_send
1357	echo "#PBS -l mppwidth=1" >> $job_to_send
1358	echo "#PBS -l mppnppn=1" >> $job_to_send
1359	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1360	echo "#PBS -j oe" >> $job_to_send
1361	echo " " >> $job_to_send
1362	echo "set -x" >> $job_to_send
1363	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1364	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1365	echo "%%END%%" >> $job_to_send
1366	else
1367
1368	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1369	echo "# @\\\$-q $return_queue" >> $job_to_send
1370	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1371	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1372	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1373	then
1374	echo "# @\$-l mpp_p=0" >> $job_to_send
1375	fi
1376	echo '# @\$-lF 10mb' >> $job_to_send
1377	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1378	echo '# @\\\$-eo' >> $job_to_send
1379	echo " " >> $job_to_send
1380	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1381	then
1382	echo "set +vx" >> $job_to_send
1383	echo ". .profile" >> $job_to_send
1384	fi
1385	echo "set -x" >> $job_to_send
1386	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1387	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1388	echo "%%END%%" >> $job_to_send
1389	fi
1390
1391	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1392	then
1393	echo "llsubmit scpjob.$identifier" >> $job_to_send
1394	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1395	then
1396	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1397	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1398	then
1399	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1400	elif [[ $remote_host = t3es ]]
1401	then
1402	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1403	elif [[ $remote_host = lckiaps ]]
1404	then
1405	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1406	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1407	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1408	elif [[ $remote_host = lckyu* ]]
1409	then
1410	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1411	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1412	elif [[ $remote_host = lcflow ]]
1413	then
1414	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1415	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1416	else
1417	echo "$submcom scpjob.$identifier" >> $job_to_send
1418	fi
1419	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1420	then
1421	echo "rm scpjob.$identifier" >> $job_to_send
1422	fi
1423	if [[ $remote_host = nech ]]
1424	then
1425	echo "cd -" >> $job_to_send
1426	fi
1427	else
1428	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1429	# ??? funktioniert das ÃŒberhaupt noch ???
1430	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1431	fi
1432	echo "set -x" >> $job_to_send
1433	echo " ' exit" >> $job_to_send
1434	echo "set -x" >> $job_to_send
1435	fi
1436
1437
1438
1439	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1440	cat $file_to_send >> $job_to_send
1441
1442	if [[ $remote_host = ibm ]]
1443	then
1444	echo " " >> $job_to_send
1445	echo "exit" >> $job_to_send
1446	fi
1447
1448	# REMOVE JOB-FILE
1449	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1450	then
1451	echo " " >> $job_to_send
1452	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1453	fi
1454
1455
1456	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1457	if [[ $no_submit = false ]]
1458	then
1459	if [[ $remote_host != $local_host ]]
1460	then
1461	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1462	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1463	then
1464	job_catalog_save=$job_catalog
1465	job_catalog=job_queue
1466	elif [[ $remote_host = nech ]]
1467	then
1468	job_catalog_save=$job_catalog
1469	job_catalog=/hpf/b/${remote_user}/job_queue
1470	fi
1471	if [[ $remote_host = nech ]]
1472	then
1473	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1474	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1475	else
1476	scp $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1477	fi
1478	if [[ $? = 1 ]]
1479	then
1480	locat=scp; exit
1481	fi
1482	if [[ $remote_host = ibms ]]
1483	then
1484	job_catalog=$job_catalog_save
1485	fi
1486	[[ $verify = true ]] && printf "\n >>> finished\n"
1487	else
1488	eval job_catalog=$job_catalog
1489	cp $job_to_send ${job_catalog}/$job_on_remhost
1490	fi
1491
1492
1493
1494	# START NQS- / LOADLEVELER-JOB
1495	if [[ $remote_host != $local_host ]]
1496	then
1497	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1498
1499	if [[ $remote_host = ibmku ]]
1500	then
1501	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1502	elif [[ $remote_host = lcflow ]]
1503	then
1504	/usr/bin/ssh $SSH_PORTOPT $remote_address -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1505	else
1506	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1507	fi
1508
1509	[[ $verify = true ]] && printf " >>> o.k.\n"
1510	else
1511	cd $job_catalog
1512	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1513	then
1514	eval $submcom $job_on_remhost
1515	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1516	then
1517	chmod u+x $job_on_remhost
1518	eval $submcom $job_on_remhost
1519	elif [[ $local_host = nech ]]
1520	then
1521	if [[ $queue = default ]]
1522	then
1523	eval $submcom $job_on_remhost
1524	else
1525	eval $submcom -q $queue $job_on_remhost
1526	fi
1527	else
1528	qsub $job_on_remhost
1529	fi
1530
1531	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1532	# AT THE END OF THE JOB
1533	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1534	then
1535	rm $job_on_remhost
1536	fi
1537	cd - > /dev/null
1538	fi
1539	fi
1540
1541
1542
1543	# FINAL ACTIONS
1544	if [[ $no_submit = false ]]
1545	then
1546	rm -f $job_to_send
1547	fi
1548	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |