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source: palm/trunk/SCRIPTS/subjob @ 1450

Last change on this file since 1450 was 1450, checked in by heinze, 10 years ago
bugfixes for large_scale forcing and nudging
Property svn:keywords set to `Id Rev`
File size: 50.5 KB

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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1450 2014-08-21 07:31:51Z heinze $
30	#
31	# 1442 2014-07-28 07:09:10Z raasch
32	# HLRN-III (lccrayb/lccrayh) queues adjusted
33	#
34	# 1378 2014-04-28 06:04:58Z raasch
35	# -et option added for lctit
36	#
37	# 1350 2014-04-04 13:01:30Z maronga
38	# location of qsub updated for lcxe6
39	#
40	# 1289 2014-03-04 07:12:34Z raasch
41	# German comments translated to English
42	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
43	#
44	# 1279 2014-01-28 12:10:14Z raasch
45	# node calculation modified due to changes in mrun (tasks_per_node must not be
46	# an integral divisor of numprocs any more)
47	#
48	# 1274 2014-01-09 13:14:54Z heinze
49	# adjustments for lccrayh
50	#
51	# 1266 2013-12-11 12:07:34Z heinze
52	# further adjustments for lccrayb (use msub instead of qsub)
53	#
54	# 1264 2013-12-09 12:46:09Z fricke
55	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
56	#
57	# 1262 2013-12-09 10:57:20Z fricke
58	# further adjustments for lccrayb
59	#
60	# 1260 2013-12-04 12:48:04Z raasch
61	# jaboticaba admitted
62	#
63	# 1255 2013-11-07 14:43:35Z raasch
64	# further adjustments for lccrayb
65	#
66	# 1224 2013-09-16 07:27:23Z raasch
67	# first adjustments for lccrayb
68	#
69	# 1202 2013-07-10 16:22:07Z witha
70	# adjustments for Forwind cluster (lcflow)
71	#
72	# 1199 2013-07-05 14:52:22Z raasch
73	# adjustments for CSC Helsinki (lccrayf)
74	#
75	# use of cluster/express queue enabled (ibmh)
76	# vinessa added (imuk)
77	#
78	# 1103 2013-02-20 02:15:53Z raasch
79	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
80	# instead typeset -L/R),
81	# further adjustments for lckyuh
82	#
83	# 2013-02-10 01:47:43Z raasch
84	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
85	# and for Forwind cluster (lcflow)
86	#
87	# 1094 2013-02-03 01:52:12Z raasch
88	# new option -P for explicit setting of ssh/scp port,
89	# decalpha parts (yonsei) removed
90	#
91	# 2013-02-02 07:06:13Z raasch
92	# adjustments for Kyushu-University computing center (lckyut - tatara)
93	# old changelog messages removed
94	#
95	# 1046 2012-11-09 14:38:45Z maronga
96	# code put under GPL (PALM 3.9)
97	#
98	# 08/07/94 - Siggi - first version finished
99	# 29/06/94 - Siggi - script development started
100	#--------------------------------------------------------------------------------#
101	# subjob - script for automatic generation and submission of batch-job files
102	# for various batch queuing systems
103	#--------------------------------------------------------------------------------#
104
105
106	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
107	delete_dayfile=false
108	email_notification=none
109	group_number=none
110	locat=normal
111	no_default_queue=none
112	no_submit=false
113	job_catalog="~/job_queue"
114	job_name=none
115	local_user=$LOGNAME
116	node_usage=shared
117	numprocs=0
118	punkte="..........................................................."
119	submcom=qsub
120	queue=default
121	remote_host=none
122	remote_user=""
123	verify=true
124
125	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
126	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
127
128
129
130	# ERROR HANDLING
131	# IN CASE OF EXIT:
132	trap 'if [[ $locat != normal ]]
133	then
134	case $locat in
135	(option) printf "\n --> available optios can be displayed"
136	printf " by typing:"
137	printf "\n \"subjob ?\" \n";;
138	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
139	(*) printf "\n +++ unknown error"
140	printf "\n please inform S. Raasch!\n"
141	esac
142	[[ -f $job_to_send ]] && rm $job_to_send
143	printf "\n\n+++ SUBJOB killed \n\n"
144	fi' exit
145
146
147	# IN CASE OF TERMINAL-BREAK:
148	trap '[[ -f $job_to_send ]] && rm $job_to_send
149	printf "\n\n+++ SUBJOB killed \n\n"
150	exit
151	' 2
152
153
154
155
156	# DETERMINE NAME OF LOCAL HOST
157	local_host=$(hostname)
158
159
160
161	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
162	# IS ADMITTED AT ALL)
163	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
164	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
165	case $local_host in
166	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
167	(atmos) local_addres=172.20.25.35; local_host=lcide;;
168	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
169	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
170	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
171	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
172	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
173	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
174	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
175	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
176	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
177	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
178	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
179	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
180	(cs*) local_addres=136.172.44.131; local_host=nech;;
181	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
182	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
183	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
184	(node*) local_addres=165.132.26.61 local_host=lck;;
185	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
186	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
187	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
188	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
189	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
190	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
191	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
192	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
193	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
194	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
195	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
196	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
197	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
198	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
199	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
200	(meller) local_addres=134.106.74.155; local_host=lcfor;;
201	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
202	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
203	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
204	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
205	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
206	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
207	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
208	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
209	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
210	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
211	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
212	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
213	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
214	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
215	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
216	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
217	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
218	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
219	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
220	(*) printf "\n +++ \"$local_host\" unknown";
221	printf "\n please contact the PALM group at IMUK";
222	locat=parameter; exit;;
223	esac
224
225
226
227	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
228	remote_host=$local_host
229
230
231
232
233	# READ THE SHELLSCRIPT-OPTIONS
234	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
235	do
236	case $option in
237	(c) job_catalog=$OPTARG;;
238	(d) delete_dayfile=true;;
239	(D) no_submit=true;;
240	(e) email_notification=$OPTARG;;
241	(g) group_number=$OPTARG;;
242	(h) remote_host=$OPTARG;;
243	(m) memory=$OPTARG;;
244	(n) job_name=$OPTARG;;
245	(N) node_usage=$OPTARG;;
246	(O) threads_per_task=$OPTARG;;
247	(P) scp_port=$OPTARG;;
248	(q) no_default_queue=$OPTARG;;
249	(t) cputime=$OPTARG;;
250	(T) tasks_per_node=$OPTARG;;
251	(u) remote_user=$OPTARG;;
252	(v) verify=false;;
253	(X) numprocs=$OPTARG;;
254	(\?) printf "\n +++ Option $OPTARG unknown \n";
255	locat=option; exit;;
256	esac
257	done
258
259
260	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
261	(( to_shift = $OPTIND - 1 ))
262	shift $to_shift; file_to_send=$1
263
264
265	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
266	if [ "$1" = "?" ]
267	then
268	(printf "\n *** subjob can be called as follows:\n"
269	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
270	printf "\n Description of available options:\n"
271	printf "\n Option Description Default-Value"
272	printf "\n -c job-input- and output-catalog ~/job_queue"
273	printf "\n -d no job-protocol will be created ---"
274	printf "\n -D only the job-file will be created ---"
275	printf "\n -h execution host, available hosts: $remote_host"
276	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
277	printf "\n lckiaps, lctit, nech"
278	printf "\n -m memory demand per process in MByte ---"
279	printf "\n -n jobname <jobdatei>"
280	printf "\n -O threads per task (for OpenMP usage) 1"
281	printf "\n -P ssh/scp port default port"
282	printf "\n -q job-queue to be used default"
283	printf "\n -t allowed cpu-time in seconds ---"
284	printf "\n -T tasks per node (on parallel hosts) ---"
285	printf "\n -u username on execution host from .netrc"
286	printf "\n -v no prompt for confirmation ---"
287	printf "\n -X # of processors (on parallel hosts) 1"
288	printf "\n "
289	printf "\n The only possible positional parameter is <jobfile>:"
290	printf "\n The complete NQS-job must be provided here."
291	printf "\n <jobfile>=? creates this outline\n\n") \| more
292	exit
293	fi
294
295
296
297	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
298	if [[ "$file_to_send" = "" ]]
299	then
300	printf "\n +++ job-file missing"
301	locat=parameter; exit
302	else
303	if [[ -f $file_to_send ]]
304	then
305	true
306	else
307	printf "\n +++ job-file: "
308	printf "\n $file_to_send"
309	printf "\n does not exist"
310	locat=parameter; exit
311	fi
312	fi
313
314
315
316	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
317	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
318	if [[ $job_name = none ]]
319	then
320	job_name=$file_to_send
321	fi
322	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
323	then
324	printf "\n +++ job-file name: "
325	printf "\n $job_name"
326	printf "\n must not contain \"/\"-characters"
327	locat=parameter; exit
328	fi
329
330
331
332
333	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
334	# OR IF NO HOST HAS BEEN GIVEN
335	if [[ $remote_host = none ]]
336	then
337	printf "\n +++ host missing"
338	locat=option; exit
339	else
340	case $remote_host in
341	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
342	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
343	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
344	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
345	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
346	(lccrayb) queue=mpp1testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
347	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
348	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
349	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
350	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
351	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
352	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
353	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
354	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
355	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
356	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
357	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
358	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
359	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
360	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
361	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
362	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
363	locat=parameter; exit;;
364	esac
365	fi
366
367
368	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
369	if [[ $no_default_queue != none ]]
370	then
371	error=false
372	ndq=$no_default_queue
373	case $remote_host in
374	(ibm) case $ndq in
375	(p690_express\|p690_standard\|p690_long) error=false;;
376	(*) error=true;;
377	esac;;
378	(ibmh) case $ndq in
379	(cluster\|express) error=false;;
380	(*) error=true;;
381	esac;;
382	(ibmkisti) case $ndq in
383	(class.32plus\|class.1-2\|class.2-32) error=false;;
384	(*) error=true;;
385	esac;;
386	(ibmku) case $ndq in
387	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
388	(*) error=true;;
389	esac;;
390	(ibms) case $ndq in
391	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
392	(*) error=true;;
393	esac;;
394	(lccrayb) case $ndq in
395	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
396	(*) error=true;;
397	esac;;
398	(lccrayh) case $ndq in
399	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
400	(*) error=true;;
401	esac;;
402	(lccrayf) case $ndq in
403	(usup\|test*\|small\|large) error=false;;
404	(*) error=true;;
405	esac;;
406	(lcflow) case $ndq in
407	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
408	(*) error=true;;
409	esac;;
410	(lckiaps) case $ndq in
411	(express\|normal) error=false;;
412	(*) error=true;;
413	esac;;
414	(lckyoto) case $ndq in
415	(eh\|ph) error=false;;
416	(*) error=true;;
417	esac;;
418	(lckyuh) case $ndq in
419	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
420	(*) error=true;;
421	esac;;
422	(lckyut) case $ndq in
423	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
424	(*) error=true;;
425	esac;;
426	(lctit) case $ndq in
427	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
428	(*) error=true;;
429	esac;;
430	(t3eb) case $ndq in
431	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
432	(*) error=true;;
433	esac;;
434	(t3eh) case $ndq in
435	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
436	(*) error=true;;
437	esac;;
438	(t3ej2\|t3ej5) case $ndq in
439	(low\|normal\|high) error=false;;
440	(*) error=true;;
441	esac;;
442	(t3es) case $ndq in
443	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
444	(*) error=true;;
445	esac;;
446	esac
447	if [[ $error = true ]]
448	then
449	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
450	locat=parameter; exit
451	else
452	queue=$no_default_queue
453	fi
454	fi
455
456
457
458	# CHECK THE CPU-TIME
459	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
460	done=false
461	while [[ $done = false ]]
462	do
463	if (( $cputime <= 0 ))
464	then
465	printf "\n +++ wrong cpu-time or cpu-time missing"
466	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
467	printf "\n >>> "
468	read cputime 1>/dev/null 2>&1
469	else
470	done=true
471	fi
472	done
473	if [[ $remote_host = nech ]]
474	then
475	if (( tasks_per_node != 0 ))
476	then
477	(( cputime = cputime * tasks_per_node ))
478	elif [[ $numprocs != 0 ]]
479	then
480	(( cputime = cputime * numprocs ))
481	fi
482	fi
483	(( stunden = cputime / 3600 ))
484	(( resttime = cputime - stunden * 3600 ))
485	(( minuten = resttime / 60 ))
486	(( sekunden = resttime - minuten * 60 ))
487	timestring=${stunden}:${minuten}:${sekunden}
488
489
490
491	# CHECK THE MEMORY DEMAND
492	done=false
493	while [[ $done = false ]]
494	do
495	if (( memory <= 0 ))
496	then
497	printf "\n +++ wrong memory demand or memory demand missing"
498	printf "\n >>> Please type memory in MByte per process as INTEGER:"
499	printf "\n >>> "
500	read memory 1>/dev/null 2>&1
501	else
502	done=true
503	fi
504	done
505
506	if [[ $remote_host = nech ]]
507	then
508	if (( tasks_per_node != 0 ))
509	then
510	(( Memory = memory * tasks_per_node / 1000 ))
511	elif [[ $numprocs != 0 ]]
512	then
513	(( Memory = memory * numprocs / 1000 ))
514	else
515	(( Memory = memory / 1000 ))
516	fi
517	elif [[ $remote_host = lctit ]]
518	then
519	(( Memory = memory * tasks_per_node / 1000 ))
520	fi
521
522
523	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
524	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
525	then
526	(( memory = memory * threads_per_task ))
527	fi
528
529
530	# CALCULATE NUMBER OF REQUIRED NODES
531	if (( tasks_per_node != 0 ))
532	then
533	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
534	fi
535
536
537	# CALCULATE NUMBER OF PROCESSES PER NODE
538	(( processes_per_node = tasks_per_node * threads_per_task ))
539
540
541	# CALCULATE NUMBER OF MPI TASKS
542	(( mpi_tasks = numprocs / threads_per_task ))
543
544
545	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
546	if [[ "$scp_port" != "" ]]
547	then
548	PORTOPT="-P $scp_port"
549	SSH_PORTOPT="-p $scp_port"
550	fi
551
552
553	# HEADER-OUTPUT
554	if [[ $verify = true ]]
555	then
556	printf "\n\n"
557	printf "#--------------------------------------------------------------# \n"
558	spalte1=SUBJOB;spalte2=$(date)
559	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
560	printf "\| \| \n"
561	printf "\| values of parameters/options: \| \n"
562	spalte1=$(echo local_host$punkte \| cut -c-20)
563	spalte2=$punkte$local_host
564	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
565	spalte1=$(echo remote_host$punkte \| cut -c-20)
566	spalte2=$punkte$remote_host
567	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
568	spalte1=$(echo queue$punkte \| cut -c-20)
569	spalte2=$punkte$queue
570	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
571	spalte1=$(echo memory$punkte \| cut -c-20)
572	spalte2="$punkte$memory mb"
573	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
574	spalte1=$(echo cputime$punkte \| cut -c-20)
575	spalte2="$punkte$cputime sec"
576	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
577	spalte1=$(echo job_name$punkte \| cut -c-20)
578	spalte2="$punkte$job_name"
579	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
580	printf "#--------------------------------------------------------------# \n\n"
581
582
583	# QUERY CHECK
584	antwort="dummy"
585	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
586	do
587	read antwort?" >>> continue (y/n) ? "
588	done
589	if [[ $antwort = n \|\| $antwort = N ]]
590	then
591	locat=verify; exit
592	fi
593	printf "\n"
594	fi
595
596
597
598	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
599	identifier=$RANDOM
600	job_on_remhost=${job_name}_${identifier}_$local_host
601	job_to_send=job_to_send_$identifier
602	if [[ $delete_dayfile = false ]]
603	then
604	remote_dayfile=${local_host}_${job_name}_result_$identifier
605	local_dayfile=${remote_host}_${job_name}
606	else
607	remote_dayfile=/dev/null
608	fi
609
610
611
612	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
613	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
614	then
615
616	# GENERAL LOADLEVELER SETTINGS
617	execute_in_shell="#!/bin/ksh"
618	use_shell="# @ shell = /bin/ksh"
619	consumable_memory="ConsumableMemory($memory mb)"
620	class="# @ class = $queue"
621	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
622	network_to_use="# @ network.mpi = sn_all,shared,us"
623	data_limit="# @ data_limit = 1.76gb"
624	image_size="# @ image_size = 50"
625	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
626
627	if [[ $email_notification = none ]]
628	then
629	notify_user=""
630	else
631	notify_user="# @ notify_user = $email_notification"
632	if [[ $delete_dayfile = true ]]
633	then
634	notification='# @ notification = never'
635	fi
636	fi
637
638	if [[ $remote_host = ibmh ]]
639	then
640	data_limit=""
641	network_to_use=""
642	class="# @ class = $queue"
643	environment=""
644	rset="# @ rset = RSET_MCM_AFFINITY"
645	task_affinity="# @ task_affinity = core(1)"
646	elif [[ $remote_host = ibmkisti ]]
647	then
648	network_to_use="# @ network.MPI = sn_all,shared,US"
649	wall_clock_limit="# @ wall_clock_limit = $timestring"
650	if [[ $threads_per_task = 1 ]]
651	then
652	rset="# @ rset = RSET_MCM_AFFINITY"
653	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
654	fi
655	environment=""
656	use_shell=""
657	data_limit=""
658	image_size=""
659	elif [[ $remote_host = ibmku ]]
660	then
661	execute_in_shell="#!/usr/bin/ksh"
662	use_shell="# @ shell = /usr/bin/ksh"
663	consumable_memory=""
664	environment=""
665	network_to_use="# @ network.mpi = sn_all,shared,us"
666	data_limit=""
667	image_size=""
668	elif [[ $remote_host = ibms ]]
669	then
670	network_to_use="# @ network.mpi = csss,shared,us"
671	fi
672
673	cat > $job_to_send << %%END%%
674	$execute_in_shell
675	$use_shell
676
677	# @ job_type = parallel
678	# @ job_name = $job_name
679	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
680	# @ output = $remote_dayfile
681	# @ error = $remote_dayfile
682	$wall_clock_limit
683	$image_size
684	$class
685	$environment
686	$network_to_use
687	$data_limit
688	$rset
689	$mcm_affinity_options
690	$task_affinity
691	$notification
692	$notify_user
693
694	%%END%%
695
696	if (( nodes > 0 ))
697	then
698
699	if [[ $remote_host != ibmkisti ]]
700	then
701
702	cat >> $job_to_send << %%END%%
703	# @ node = $nodes
704	# @ tasks_per_node = $processes_per_node
705	# @ node_usage = $node_usage
706	# @ queue
707
708	%%END%%
709
710	else
711
712	cat >> $job_to_send << %%END%%
713	# @ total_tasks = $mpi_tasks
714	# @ blocking = unlimited
715	# @ queue
716
717	%%END%%
718
719	fi
720
721	else
722
723	cat >> $job_to_send << %%END%%
724	# @ blocking = unlimited
725	# @ total_tasks = $numprocs
726	# @ node_usage = $node_usage
727	# @ queue
728
729	%%END%%
730
731	fi
732
733	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
734	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
735	then
736	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
737	fi
738
739	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
740	then
741
742	cat > $job_to_send << %%END%%
743	#!/bin/ksh
744
745	# @ job_type = serial
746	# @ node_usage = $node_usage
747	# @ job_name = palm
748	# @ wall_clock_limit = ${timestring},$timestring
749	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
750	# @ output = $remote_dayfile
751	# @ error = $remote_dayfile
752	$class
753	$notification
754
755	# @ queue
756
757	%%END%%
758
759	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
760	then
761
762	if [[ $numprocs != 0 ]]
763	then
764	cat > $job_to_send << %%END%%
765	#!/bin/bash
766	#PBS -N $job_name
767	#PBS -l walltime=$timestring
768	#PBS -l nodes=$nodes:ppn=$processes_per_node
769	#PBS -o $remote_dayfile
770	#PBS -j oe
771	#PBS -q $queue
772
773	$module_calls
774
775	%%END%%
776
777	else
778
779	continue
780
781	fi
782
783	elif [[ $remote_host = lccrayf ]]
784	then
785
786	if [[ $numprocs != 0 ]]
787	then
788	cat > $job_to_send << %%END%%
789	#!/bin/bash -l
790	#SBATCH -J $job_name
791	#SBATCH -t $timestring
792	#SBATCH -N $nodes
793	#SBATCH --ntasks-per-node=$processes_per_node
794	#SBATCH -p $queue
795	#SBATCH -o $remote_dayfile
796	#SBATCH -e $remote_dayfile
797
798	$init_cmds
799	$module_calls
800
801	%%END%%
802
803	else
804	cat > $job_to_send << %%END%%
805	#!/bin/bash -l
806	#SBATCH -J $job_name
807	#SBATCH -t $timestring
808	#SBATCH -l ncpus=1
809	#SBATCH -l pmem=${memory}mb
810	#SBATCH -m abe
811	#SBATCH -o $remote_dayfile
812	#SBATCH -e $remote_dayfile
813
814	$init_cmds
815	$module_calls
816
817	%%END%%
818
819	fi
820
821	elif [[ $remote_host = lcflow ]]
822	then
823	if [ $memory -gt 1800 ]; then
824	use_himem=""
825	else
826	use_himem="#"
827	fi
828	if [[ $numprocs != 0 ]]
829	then
830	pe_set="#$ -pe impi41 $numprocs"
831	else
832	pe_set="#$ -pe impi41 1"
833	fi
834	if [[ $queue = default ]]
835	then
836	queue_set=""
837	else
838	queue_set="#$ -q $queue"
839	fi
840	[[ "$disc_space" = "" ]] && disc_space=50
841
842	cat > $job_to_send << %%END%%
843	#!/bin/bash
844	#$ -S /bin/bash
845	#$ -N $job_name
846	#$ -cwd
847	#$ -l h_rt=$timestring
848	#$ -l h_vmem=${memory}M
849	#$ -o $remote_dayfile
850	#$ -j y
851	$pe_set
852	#$ -R y
853	${use_himem}#$ -l highmem=true
854	#$ -l h_fsize=${disc_space}G
855	$queue_set
856
857	%%END%%
858
859	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
860	then
861
862	if [[ $numprocs != 0 ]]
863	then
864	cat > $job_to_send << %%END%%
865	#!/bin/ksh
866	#PBS -N $job_name
867	#PBS -l walltime=$timestring
868	#PBS -l ncpus=$numprocs
869	#PBS -l pmem=${memory}mb
870	#PBS -o $remote_dayfile
871	#PBS -l nodes=$nodes:ppn=${processes_per_node}
872	#PBS -j oe
873
874	mpd &
875
876	%%END%%
877
878	else
879	cat > $job_to_send << %%END%%
880	#!/bin/ksh
881	#PBS -N $job_name
882	#PBS -l walltime=$timestring
883	#PBS -l ncpus=1
884	#PBS -l pmem=${memory}mb
885	#PBS -o $remote_dayfile
886	#PBS -j oe
887
888	%%END%%
889
890	fi
891
892	elif [[ $remote_host = lckiaps ]]
893	then
894
895	if [[ $numprocs != 0 ]]
896	then
897	cat > $job_to_send << %%END%%
898	#!/bin/ksh
899	#PBS -N $job_name
900	#PBS -l walltime=$timestring
901	#PBS -l select=1:ncpus=$numprocs
902	#PBS -l pmem=${memory}mb
903	#PBS -q $queue
904	#PBS -o $remote_dayfile
905	#PBS -j oe
906	#PBS -V
907
908	%%END%%
909
910	else
911	cat > $job_to_send << %%END%%
912	#!/bin/ksh
913	#PBS -N $job_name
914	#PBS -l walltime=$timestring
915	#PBS -l ncpus=1
916	#PBS -l pmem=${memory}mb
917	#PBS -o $remote_dayfile
918	#PBS -j oe
919
920	%%END%%
921
922	fi
923
924	elif [[ $remote_host = lcyon ]]
925	then
926
927	if [[ $numprocs != 0 ]]
928	then
929	cat > $job_to_send << %%END%%
930	#!/bin/ksh
931	#PBS -N $job_name
932	#PBS -l walltime=$timestring
933	#PBS -l ncpus=$numprocs
934	#PBS -l pmem=${memory}mb
935	#PBS -o $remote_dayfile
936	#PBS -j oe
937
938	%%END%%
939
940	else
941	cat > $job_to_send << %%END%%
942	#!/bin/ksh
943	#PBS -N $job_name
944	#PBS -l walltime=$timestring
945	#PBS -l ncpus=1
946	#PBS -l pmem=${memory}mb
947	#PBS -o $remote_dayfile
948	#PBS -j oe
949
950	%%END%%
951
952	fi
953
954	elif [[ $remote_host = lcxe6 ]]
955	then
956
957	if [[ $numprocs != 0 ]]
958	then
959	cat > $job_to_send << %%END%%
960	#!/bin/ksh
961	#PBS -S /bin/ksh
962	#PBS -N $job_name
963	#PBS -A $project_account
964	#PBS -j oe
965	#PBS -l walltime=$timestring
966	#PBS -l mppwidth=${numprocs}
967	#PBS -l mppnppn=${processes_per_node}
968	#PBS -m abe
969	#PBS -o $remote_dayfile
970	$email_directive
971
972	$init_cmds
973	$module_calls
974
975	%%END%%
976
977	else
978	cat > $job_to_send << %%END%%
979	#!/bin/ksh
980	#PBS -S /bin/ksh
981	#PBS -N $job_name
982	#PBS -A $project_account
983	#PBS -j oe
984	#PBS -l walltime=$timestring
985	#PBS -l ncpus=1
986	#PBS -l pmem=${memory}mb
987	#PBS -m abe
988	$email_directive
989	#PBS -o $remote_dayfile
990
991	$init_cmds
992	$module_calls
993
994	%%END%%
995
996	fi
997
998	elif [[ $remote_host = lckyoto ]]
999	then
1000
1001	cat > $job_to_send << %%END%%
1002	#!/bin/ksh
1003	# @\$-o $remote_dayfile
1004	# @\$-eo -oi
1005	# @\$-lP 16
1006	# @\$-lp 1
1007	# @\$-lm 28gb -llm unlimited -ls unlimited
1008	# @\$-q $queue
1009	# @\$-Pvn abs_pack
1010	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1011	#. /thin/local/etc/setprofile/intel-11.0.sh
1012	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1013	. ~/.myprofile
1014	#. /home2/t/t51254/palm/current_version/myprofile
1015	#. /thin/apps/pgi/mpi.sh
1016	#
1017	env
1018	#
1019	set -x
1020
1021	%%END%%
1022
1023	elif [[ $remote_host = lcxt5m ]]
1024	then
1025
1026	if [[ $numprocs != 0 ]]
1027	then
1028	cat > $job_to_send << %%END%%
1029	#!/bin/ksh
1030	#PBS -S /bin/ksh
1031	#PBS -N $job_name
1032	#PBS -j oe
1033	#PBS -l walltime=$timestring
1034	#PBS -l mppwidth=${numprocs}
1035	#PBS -l mppnppn=${processes_per_node}
1036	#PBS -m abe
1037	#PBS -o $remote_dayfile
1038
1039	$init_cmds
1040	$module_calls
1041
1042	%%END%%
1043
1044	else
1045	cat > $job_to_send << %%END%%
1046	#!/bin/ksh
1047	#PBS -S /bin/ksh
1048	#PBS -N $job_name
1049	#PBS -j oe
1050	#PBS -l walltime=$timestring
1051	#PBS -l ncpus=1
1052	#PBS -l pmem=${memory}mb
1053	#PBS -m abe
1054	#PBS -o $remote_dayfile
1055
1056	$init_cmds
1057	$module_calls
1058
1059	%%END%%
1060
1061	fi
1062
1063	elif [[ $remote_host = lckyuh ]]
1064	then
1065	cat > $job_to_send << %%END%%
1066	#!/bin/bash
1067	#PJM -L "rscgrp=$queue"
1068	#PJM -L "node=$nodes"
1069	#PJM --mpi "proc=$numprocs"
1070	#PJM -L "elapse=$timestring"
1071	#PJM -o $remote_dayfile
1072	#PJM -j
1073	#PJM -X
1074	#PJM --no-stging
1075
1076	export LANG=en_US.UTF-8
1077	%%END%%
1078
1079	elif [[ $remote_host = lckyut ]]
1080	then
1081	cat > $job_to_send << %%END%%
1082	#!/bin/bash
1083	#PJM -L "rscgrp=$queue"
1084	#PJM -L "vnode=$numprocs"
1085	#PJM -L "vnode-core=1"
1086	#PJM -L "elapse=$timestring"
1087	#PJM --mpi proc=$numprocs
1088	#PJM -o $remote_dayfile
1089	#PJM -j
1090	#PJM -X
1091	#PJM --no-stging
1092
1093	export LANG=en_US.UTF-8
1094	%%END%%
1095
1096	elif [[ $remote_host = nech ]]
1097	then
1098
1099	if (( nodes > 1 ))
1100	then
1101	cat > $job_to_send << %%END%%
1102	#!/bin/ksh
1103	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1104	#PBS -l ${qsubmem}=${Memory}gb
1105	#PBS -b $nodes
1106	#PBS -o $remote_dayfile
1107	#PBS -N palm
1108	#PBS -j o
1109	#PBS -T mpisx
1110
1111	%%END%%
1112
1113	elif [[ $numprocs != 0 ]]
1114	then
1115	cat > $job_to_send << %%END%%
1116	#!/bin/ksh
1117	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1118	#PBS -l ${qsubmem}=${Memory}gb
1119	#PBS -o $remote_dayfile
1120	#PBS -N palm
1121	#PBS -j o
1122
1123	%%END%%
1124
1125	else
1126	cat > $job_to_send << %%END%%
1127	#!/bin/ksh
1128	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1129	#PBS -o $remote_dayfile
1130	#PBS -j o
1131
1132	%%END%%
1133
1134	fi
1135
1136	elif [[ $remote_host = lctit ]]
1137	then
1138	cat > $job_to_send << %%END%%
1139	#!/bin/ksh
1140	$init_cmds
1141	$module_calls
1142
1143	%%END%%
1144
1145	# SET OPTIONS FOR SUBMIT-COMMAND
1146	if [[ $tasks_per_node != $processes_per_node ]]
1147	then
1148	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1149	else
1150	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1151	fi
1152
1153	else
1154
1155	cat > $job_to_send << %%END%%
1156	# @\$-q ${queue}
1157	# @\$-l${qsubtime} $timestring
1158	# @\$-l${qsubmem} ${memory}mb
1159	# @\$-o $remote_dayfile
1160	# @\$-eo
1161
1162	%%END%%
1163
1164	fi
1165
1166
1167	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1168	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1169	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1170	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1171	then
1172	echo "set +vx" >> $job_to_send
1173	echo "trap '" >> $job_to_send
1174	echo "set +vx" >> $job_to_send
1175	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1176	then
1177	if [[ $remote_host = ibmh ]]
1178	then
1179	return_queue=c1
1180	elif [[ $remote_host = ibmkisti ]]
1181	then
1182	return_queue=class.1-2
1183	elif [[ $remote_host = ibmku ]]
1184	then
1185	return_queue=sdbg2
1186	elif [[ $remote_host = ibms ]]
1187	then
1188	return_queue=p_normal
1189	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1190	then
1191	return_queue=dataq
1192	elif [[ $remote_host = lckiaps ]]
1193	then
1194	return_queue=express
1195	elif [[ $remote_host = lckyuh ]]
1196	then
1197	return_queue=cx-single
1198	elif [[ $remote_host = lckyut ]]
1199	then
1200	return_queue=cx-single
1201	else
1202	return_queue=unknown
1203	fi
1204
1205	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1206	then
1207
1208	if [[ $remote_host = ibmku ]]
1209	then
1210	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1211	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1212	else
1213	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1214	fi
1215	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1216	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1217	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1218	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1219	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1220	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1221	if [[ $host != "ibmh" ]]
1222	then
1223	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1224	fi
1225	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1226	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1227
1228	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1229	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1230
1231	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1232	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1233	if [[ $remote_host = ibmku ]]
1234	then
1235	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1236	fi
1237	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1238
1239	elif [[ $remote_host = nech ]]
1240	then
1241	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1242	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1243	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1244	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1245	echo "#PBS -j o" >> $job_to_send
1246	echo " " >> $job_to_send
1247	echo "set -x" >> $job_to_send
1248	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1249	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1250	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1251	echo "%%END%%" >> $job_to_send
1252
1253	elif [[ $remote_host = lckyuh ]]
1254	then
1255	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1256	echo "#!/bin/bash" >> $job_to_send
1257	echo "#PJM -L \"node=1\"" >> $job_to_send
1258	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1259	echo "#PJM --no-stging" >> $job_to_send
1260	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1261	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1262	echo "#PJM -j" >> $job_to_send
1263	echo " " >> $job_to_send
1264	echo "export LANG=en_US.UTF-8" >> $job_to_send
1265	echo "set -x" >> $job_to_send
1266	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1267	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1268	echo "%%END%%" >> $job_to_send
1269
1270	elif [[ $remote_host = lckyut ]]
1271	then
1272	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1273	echo "#!/bin/bash" >> $job_to_send
1274	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1275	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1276	echo "#PJM --no-stging" >> $job_to_send
1277	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1278	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1279	echo "#PJM -j" >> $job_to_send
1280	echo " " >> $job_to_send
1281	echo "export LANG=en_US.UTF-8" >> $job_to_send
1282	echo "set -x" >> $job_to_send
1283	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1284	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1285	echo "%%END%%" >> $job_to_send
1286
1287	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1288	then
1289	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1290	echo "#!/bin/bash" >> $job_to_send
1291	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1292	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1293	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1294	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1295	echo "#PBS -j oe" >> $job_to_send
1296	echo " " >> $job_to_send
1297	echo "set -x" >> $job_to_send
1298	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1299	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1300	echo "%%END%%" >> $job_to_send
1301
1302	elif [[ $remote_host = lcflow ]]
1303	then
1304	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1305	echo "#!/bin/bash" >> $job_to_send
1306	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1307	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1308	echo "SGEPREFIX -cwd" >> $job_to_send
1309	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1310	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1311	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1312	echo "SGEPREFIX -j y" >> $job_to_send
1313	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1314	echo " " >> $job_to_send
1315	echo "set -x" >> $job_to_send
1316	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1317	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1318	echo "" >> $job_to_send
1319	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1320	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1321	echo "rm -f scpjob.${identifier}" >> $job_to_send
1322	echo "%%END%%" >> $job_to_send
1323	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1324	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1325
1326	else
1327
1328	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1329	echo "# @\\\$-q $return_queue" >> $job_to_send
1330	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1331	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1332	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1333	then
1334	echo "# @\$-l mpp_p=0" >> $job_to_send
1335	fi
1336	echo '# @\$-lF 10mb' >> $job_to_send
1337	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1338	echo '# @\\\$-eo' >> $job_to_send
1339	echo " " >> $job_to_send
1340	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1341	then
1342	echo "set +vx" >> $job_to_send
1343	echo ". .profile" >> $job_to_send
1344	fi
1345	echo "set -x" >> $job_to_send
1346	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1347	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1348	echo "%%END%%" >> $job_to_send
1349	fi
1350
1351	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1352	then
1353	echo "llsubmit scpjob.$identifier" >> $job_to_send
1354	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1355	then
1356	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1357	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1358	then
1359	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1360	elif [[ $remote_host = t3es ]]
1361	then
1362	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1363	elif [[ $remote_host = lckiaps ]]
1364	then
1365	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1366	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1367	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1368	elif [[ $remote_host = lckyu* ]]
1369	then
1370	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1371	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1372	elif [[ $remote_host = lcflow ]]
1373	then
1374	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1375	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1376	else
1377	echo "$submcom scpjob.$identifier" >> $job_to_send
1378	fi
1379	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1380	then
1381	echo "rm scpjob.$identifier" >> $job_to_send
1382	fi
1383	if [[ $remote_host = nech ]]
1384	then
1385	echo "cd -" >> $job_to_send
1386	fi
1387	else
1388	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1389	# ??? funktioniert das ÃŒberhaupt noch ???
1390	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1391	fi
1392	echo "set -x" >> $job_to_send
1393	echo " ' exit" >> $job_to_send
1394	echo "set -x" >> $job_to_send
1395	fi
1396
1397
1398
1399	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1400	cat $file_to_send >> $job_to_send
1401
1402	if [[ $remote_host = ibm ]]
1403	then
1404	echo " " >> $job_to_send
1405	echo "exit" >> $job_to_send
1406	fi
1407
1408	# REMOVE JOB-FILE
1409	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1410	then
1411	echo " " >> $job_to_send
1412	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1413	fi
1414
1415
1416	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1417	if [[ $no_submit = false ]]
1418	then
1419	if [[ $remote_host != $local_host ]]
1420	then
1421	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1422	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1423	then
1424	job_catalog_save=$job_catalog
1425	job_catalog=job_queue
1426	elif [[ $remote_host = nech ]]
1427	then
1428	job_catalog_save=$job_catalog
1429	job_catalog=/hpf/b/${remote_user}/job_queue
1430	fi
1431	if [[ $remote_host = nech ]]
1432	then
1433	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1434	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1435	else
1436	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1437	fi
1438	if [[ $? = 1 ]]
1439	then
1440	locat=scp; exit
1441	fi
1442	if [[ $remote_host = ibms ]]
1443	then
1444	job_catalog=$job_catalog_save
1445	fi
1446	[[ $verify = true ]] && printf "\n >>> finished\n"
1447	else
1448	eval job_catalog=$job_catalog
1449	cp $job_to_send ${job_catalog}/$job_on_remhost
1450	fi
1451
1452
1453
1454	# START NQS- / LOADLEVELER-JOB
1455	if [[ $remote_host != $local_host ]]
1456	then
1457	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1458
1459	if [[ $remote_host = ibmku ]]
1460	then
1461	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1462	elif [[ $remote_host = lcflow ]]
1463	then
1464	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1465	else
1466	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1467	fi
1468
1469	[[ $verify = true ]] && printf " >>> o.k.\n"
1470	else
1471	cd $job_catalog
1472	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1473	then
1474	eval $submcom $job_on_remhost
1475	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1476	then
1477	chmod u+x $job_on_remhost
1478	eval $submcom $job_on_remhost
1479	elif [[ $local_host = nech ]]
1480	then
1481	if [[ $queue = default ]]
1482	then
1483	eval $submcom $job_on_remhost
1484	else
1485	eval $submcom -q $queue $job_on_remhost
1486	fi
1487	else
1488	qsub $job_on_remhost
1489	fi
1490
1491	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1492	# AT THE END OF THE JOB
1493	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1494	then
1495	rm $job_on_remhost
1496	fi
1497	cd - > /dev/null
1498	fi
1499	fi
1500
1501
1502
1503	# FINAL ACTIONS
1504	if [[ $no_submit = false ]]
1505	then
1506	rm -f $job_to_send
1507	fi
1508	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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