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source: palm/trunk/SCRIPTS/subjob @ 1389

Last change on this file since 1389 was 1379, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1379 2014-04-28 06:05:51Z maronga $
30	#
31	# 1378 2014-04-28 06:04:58Z raasch
32	# -et option added for lctit
33	#
34	# 1350 2014-04-04 13:01:30Z maronga
35	# location of qsub updated for lcxe6
36	#
37	# 1289 2014-03-04 07:12:34Z raasch
38	# German comments translated to English
39	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
40	#
41	# 1279 2014-01-28 12:10:14Z raasch
42	# node calculation modified due to changes in mrun (tasks_per_node must not be
43	# an integral divisor of numprocs any more)
44	#
45	# 1274 2014-01-09 13:14:54Z heinze
46	# adjustments for lccrayh
47	#
48	# 1266 2013-12-11 12:07:34Z heinze
49	# further adjustments for lccrayb (use msub instead of qsub)
50	#
51	# 1264 2013-12-09 12:46:09Z fricke
52	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
53	#
54	# 1262 2013-12-09 10:57:20Z fricke
55	# further adjustments for lccrayb
56	#
57	# 1260 2013-12-04 12:48:04Z raasch
58	# jaboticaba admitted
59	#
60	# 1255 2013-11-07 14:43:35Z raasch
61	# further adjustments for lccrayb
62	#
63	# 1224 2013-09-16 07:27:23Z raasch
64	# first adjustments for lccrayb
65	#
66	# 1202 2013-07-10 16:22:07Z witha
67	# adjustments for Forwind cluster (lcflow)
68	#
69	# 1199 2013-07-05 14:52:22Z raasch
70	# adjustments for CSC Helsinki (lccrayf)
71	#
72	# use of cluster/express queue enabled (ibmh)
73	# vinessa added (imuk)
74	#
75	# 1103 2013-02-20 02:15:53Z raasch
76	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
77	# instead typeset -L/R),
78	# further adjustments for lckyuh
79	#
80	# 2013-02-10 01:47:43Z raasch
81	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
82	# and for Forwind cluster (lcflow)
83	#
84	# 1094 2013-02-03 01:52:12Z raasch
85	# new option -P for explicit setting of ssh/scp port,
86	# decalpha parts (yonsei) removed
87	#
88	# 2013-02-02 07:06:13Z raasch
89	# adjustments for Kyushu-University computing center (lckyut - tatara)
90	# old changelog messages removed
91	#
92	# 1046 2012-11-09 14:38:45Z maronga
93	# code put under GPL (PALM 3.9)
94	#
95	# 08/07/94 - Siggi - first version finished
96	# 29/06/94 - Siggi - script development started
97	#--------------------------------------------------------------------------------#
98	# subjob - script for automatic generation and submission of batch-job files
99	# for various batch queuing systems
100	#--------------------------------------------------------------------------------#
101
102
103	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
104	delete_dayfile=false
105	email_notification=none
106	group_number=none
107	locat=normal
108	no_default_queue=none
109	no_submit=false
110	job_catalog="~/job_queue"
111	job_name=none
112	local_user=$LOGNAME
113	node_usage=shared
114	numprocs=0
115	punkte="..........................................................."
116	submcom=qsub
117	queue=default
118	remote_host=none
119	remote_user=""
120	verify=true
121
122	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
123	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
124
125
126
127	# ERROR HANDLING
128	# IN CASE OF EXIT:
129	trap 'if [[ $locat != normal ]]
130	then
131	case $locat in
132	(option) printf "\n --> available optios can be displayed"
133	printf " by typing:"
134	printf "\n \"subjob ?\" \n";;
135	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
136	(*) printf "\n +++ unknown error"
137	printf "\n please inform S. Raasch!\n"
138	esac
139	[[ -f $job_to_send ]] && rm $job_to_send
140	printf "\n\n+++ SUBJOB killed \n\n"
141	fi' exit
142
143
144	# IN CASE OF TERMINAL-BREAK:
145	trap '[[ -f $job_to_send ]] && rm $job_to_send
146	printf "\n\n+++ SUBJOB killed \n\n"
147	exit
148	' 2
149
150
151
152
153	# DETERMINE NAME OF LOCAL HOST
154	local_host=$(hostname)
155
156
157
158	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
159	# IS ADMITTED AT ALL)
160	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
161	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
162	case $local_host in
163	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
164	(atmos) local_addres=172.20.25.35; local_host=lcide;;
165	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
166	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
167	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
168	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
169	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
170	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
171	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
172	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
173	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
174	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
175	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
176	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
177	(cs*) local_addres=136.172.44.131; local_host=nech;;
178	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
179	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
180	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
181	(node*) local_addres=165.132.26.61 local_host=lck;;
182	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
183	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
184	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
185	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
186	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
187	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
188	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
189	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
190	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
191	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
192	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
193	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
194	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
195	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
196	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
197	(meller) local_addres=134.106.74.155; local_host=lcfor;;
198	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
199	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
200	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
201	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
202	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
203	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
204	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
205	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
206	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
207	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
208	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
209	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
210	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
211	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
212	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
213	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
214	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
215	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
216	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
217	(*) printf "\n +++ \"$local_host\" unknown";
218	printf "\n please contact the PALM group at IMUK";
219	locat=parameter; exit;;
220	esac
221
222
223
224	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
225	remote_host=$local_host
226
227
228
229
230	# READ THE SHELLSCRIPT-OPTIONS
231	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
232	do
233	case $option in
234	(c) job_catalog=$OPTARG;;
235	(d) delete_dayfile=true;;
236	(D) no_submit=true;;
237	(e) email_notification=$OPTARG;;
238	(g) group_number=$OPTARG;;
239	(h) remote_host=$OPTARG;;
240	(m) memory=$OPTARG;;
241	(n) job_name=$OPTARG;;
242	(N) node_usage=$OPTARG;;
243	(O) threads_per_task=$OPTARG;;
244	(P) scp_port=$OPTARG;;
245	(q) no_default_queue=$OPTARG;;
246	(t) cputime=$OPTARG;;
247	(T) tasks_per_node=$OPTARG;;
248	(u) remote_user=$OPTARG;;
249	(v) verify=false;;
250	(X) numprocs=$OPTARG;;
251	(\?) printf "\n +++ Option $OPTARG unknown \n";
252	locat=option; exit;;
253	esac
254	done
255
256
257	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
258	(( to_shift = $OPTIND - 1 ))
259	shift $to_shift; file_to_send=$1
260
261
262	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
263	if [ "$1" = "?" ]
264	then
265	(printf "\n *** subjob can be called as follows:\n"
266	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
267	printf "\n Description of available options:\n"
268	printf "\n Option Description Default-Value"
269	printf "\n -c job-input- and output-catalog ~/job_queue"
270	printf "\n -d no job-protocol will be created ---"
271	printf "\n -D only the job-file will be created ---"
272	printf "\n -h execution host, available hosts: $remote_host"
273	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
274	printf "\n lckiaps, lctit, nech"
275	printf "\n -m memory demand per process in MByte ---"
276	printf "\n -n jobname <jobdatei>"
277	printf "\n -O threads per task (for OpenMP usage) 1"
278	printf "\n -P ssh/scp port default port"
279	printf "\n -q job-queue to be used default"
280	printf "\n -t allowed cpu-time in seconds ---"
281	printf "\n -T tasks per node (on parallel hosts) ---"
282	printf "\n -u username on execution host from .netrc"
283	printf "\n -v no prompt for confirmation ---"
284	printf "\n -X # of processors (on parallel hosts) 1"
285	printf "\n "
286	printf "\n The only possible positional parameter is <jobfile>:"
287	printf "\n The complete NQS-job must be provided here."
288	printf "\n <jobfile>=? creates this outline\n\n") \| more
289	exit
290	fi
291
292
293
294	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
295	if [[ "$file_to_send" = "" ]]
296	then
297	printf "\n +++ job-file missing"
298	locat=parameter; exit
299	else
300	if [[ -f $file_to_send ]]
301	then
302	true
303	else
304	printf "\n +++ job-file: "
305	printf "\n $file_to_send"
306	printf "\n does not exist"
307	locat=parameter; exit
308	fi
309	fi
310
311
312
313	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
314	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
315	if [[ $job_name = none ]]
316	then
317	job_name=$file_to_send
318	fi
319	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
320	then
321	printf "\n +++ job-file name: "
322	printf "\n $job_name"
323	printf "\n must not contain \"/\"-characters"
324	locat=parameter; exit
325	fi
326
327
328
329
330	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
331	# OR IF NO HOST HAS BEEN GIVEN
332	if [[ $remote_host = none ]]
333	then
334	printf "\n +++ host missing"
335	locat=option; exit
336	else
337	case $remote_host in
338	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
339	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
340	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
341	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
342	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
343	(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
344	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
345	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
346	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
347	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
348	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
349	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
350	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
351	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
352	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
353	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
354	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
355	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
356	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
357	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
358	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
359	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
360	locat=parameter; exit;;
361	esac
362	fi
363
364
365	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
366	if [[ $no_default_queue != none ]]
367	then
368	error=false
369	ndq=$no_default_queue
370	case $remote_host in
371	(ibm) case $ndq in
372	(p690_express\|p690_standard\|p690_long) error=false;;
373	(*) error=true;;
374	esac;;
375	(ibmh) case $ndq in
376	(cluster\|express) error=false;;
377	(*) error=true;;
378	esac;;
379	(ibmkisti) case $ndq in
380	(class.32plus\|class.1-2\|class.2-32) error=false;;
381	(*) error=true;;
382	esac;;
383	(ibmku) case $ndq in
384	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
385	(*) error=true;;
386	esac;;
387	(ibms) case $ndq in
388	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
389	(*) error=true;;
390	esac;;
391	(lccrayb) case $ndq in
392	(mpp1q\|testq\|specialm1q) error=false;;
393	(*) error=true;;
394	esac;;
395	(lccrayh) case $ndq in
396	(mpp1q\|mpp1testq\|specialm1q\|dataq) error=false;;
397	(*) error=true;;
398	esac;;
399	(lccrayf) case $ndq in
400	(usup\|test*\|small\|large) error=false;;
401	(*) error=true;;
402	esac;;
403	(lcflow) case $ndq in
404	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
405	(*) error=true;;
406	esac;;
407	(lckiaps) case $ndq in
408	(express\|normal) error=false;;
409	(*) error=true;;
410	esac;;
411	(lckyoto) case $ndq in
412	(eh\|ph) error=false;;
413	(*) error=true;;
414	esac;;
415	(lckyuh) case $ndq in
416	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
417	(*) error=true;;
418	esac;;
419	(lckyut) case $ndq in
420	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
421	(*) error=true;;
422	esac;;
423	(lctit) case $ndq in
424	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
425	(*) error=true;;
426	esac;;
427	(t3eb) case $ndq in
428	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
429	(*) error=true;;
430	esac;;
431	(t3eh) case $ndq in
432	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
433	(*) error=true;;
434	esac;;
435	(t3ej2\|t3ej5) case $ndq in
436	(low\|normal\|high) error=false;;
437	(*) error=true;;
438	esac;;
439	(t3es) case $ndq in
440	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
441	(*) error=true;;
442	esac;;
443	esac
444	if [[ $error = true ]]
445	then
446	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
447	locat=parameter; exit
448	else
449	queue=$no_default_queue
450	fi
451	fi
452
453
454
455	# CHECK THE CPU-TIME
456	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
457	done=false
458	while [[ $done = false ]]
459	do
460	if (( $cputime <= 0 ))
461	then
462	printf "\n +++ wrong cpu-time or cpu-time missing"
463	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
464	printf "\n >>> "
465	read cputime 1>/dev/null 2>&1
466	else
467	done=true
468	fi
469	done
470	if [[ $remote_host = nech ]]
471	then
472	if (( tasks_per_node != 0 ))
473	then
474	(( cputime = cputime * tasks_per_node ))
475	elif [[ $numprocs != 0 ]]
476	then
477	(( cputime = cputime * numprocs ))
478	fi
479	fi
480	(( stunden = cputime / 3600 ))
481	(( resttime = cputime - stunden * 3600 ))
482	(( minuten = resttime / 60 ))
483	(( sekunden = resttime - minuten * 60 ))
484	timestring=${stunden}:${minuten}:${sekunden}
485
486
487
488	# CHECK THE MEMORY DEMAND
489	done=false
490	while [[ $done = false ]]
491	do
492	if (( memory <= 0 ))
493	then
494	printf "\n +++ wrong memory demand or memory demand missing"
495	printf "\n >>> Please type memory in MByte per process as INTEGER:"
496	printf "\n >>> "
497	read memory 1>/dev/null 2>&1
498	else
499	done=true
500	fi
501	done
502
503	if [[ $remote_host = nech ]]
504	then
505	if (( tasks_per_node != 0 ))
506	then
507	(( Memory = memory * tasks_per_node / 1000 ))
508	elif [[ $numprocs != 0 ]]
509	then
510	(( Memory = memory * numprocs / 1000 ))
511	else
512	(( Memory = memory / 1000 ))
513	fi
514	elif [[ $remote_host = lctit ]]
515	then
516	(( Memory = memory * tasks_per_node / 1000 ))
517	fi
518
519
520	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
521	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
522	then
523	(( memory = memory * threads_per_task ))
524	fi
525
526
527	# CALCULATE NUMBER OF REQUIRED NODES
528	if (( tasks_per_node != 0 ))
529	then
530	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
531	fi
532
533
534	# CALCULATE NUMBER OF PROCESSES PER NODE
535	(( processes_per_node = tasks_per_node * threads_per_task ))
536
537
538	# CALCULATE NUMBER OF MPI TASKS
539	(( mpi_tasks = numprocs / threads_per_task ))
540
541
542	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
543	if [[ "$scp_port" != "" ]]
544	then
545	PORTOPT="-P $scp_port"
546	SSH_PORTOPT="-p $scp_port"
547	fi
548
549
550	# HEADER-OUTPUT
551	if [[ $verify = true ]]
552	then
553	printf "\n\n"
554	printf "#--------------------------------------------------------------# \n"
555	spalte1=SUBJOB;spalte2=$(date)
556	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
557	printf "\| \| \n"
558	printf "\| values of parameters/options: \| \n"
559	spalte1=$(echo local_host$punkte \| cut -c-20)
560	spalte2=$punkte$local_host
561	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
562	spalte1=$(echo remote_host$punkte \| cut -c-20)
563	spalte2=$punkte$remote_host
564	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
565	spalte1=$(echo queue$punkte \| cut -c-20)
566	spalte2=$punkte$queue
567	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
568	spalte1=$(echo memory$punkte \| cut -c-20)
569	spalte2="$punkte$memory mb"
570	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
571	spalte1=$(echo cputime$punkte \| cut -c-20)
572	spalte2="$punkte$cputime sec"
573	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
574	spalte1=$(echo job_name$punkte \| cut -c-20)
575	spalte2="$punkte$job_name"
576	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
577	printf "#--------------------------------------------------------------# \n\n"
578
579
580	# QUERY CHECK
581	antwort="dummy"
582	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
583	do
584	read antwort?" >>> continue (y/n) ? "
585	done
586	if [[ $antwort = n \|\| $antwort = N ]]
587	then
588	locat=verify; exit
589	fi
590	printf "\n"
591	fi
592
593
594
595	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
596	identifier=$RANDOM
597	job_on_remhost=${job_name}_${identifier}_$local_host
598	job_to_send=job_to_send_$identifier
599	if [[ $delete_dayfile = false ]]
600	then
601	remote_dayfile=${local_host}_${job_name}_result_$identifier
602	local_dayfile=${remote_host}_${job_name}
603	else
604	remote_dayfile=/dev/null
605	fi
606
607
608
609	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
610	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
611	then
612
613	# GENERAL LOADLEVELER SETTINGS
614	execute_in_shell="#!/bin/ksh"
615	use_shell="# @ shell = /bin/ksh"
616	consumable_memory="ConsumableMemory($memory mb)"
617	class="# @ class = $queue"
618	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
619	network_to_use="# @ network.mpi = sn_all,shared,us"
620	data_limit="# @ data_limit = 1.76gb"
621	image_size="# @ image_size = 50"
622	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
623
624	if [[ $email_notification = none ]]
625	then
626	notify_user=""
627	else
628	notify_user="# @ notify_user = $email_notification"
629	if [[ $delete_dayfile = true ]]
630	then
631	notification='# @ notification = never'
632	fi
633	fi
634
635	if [[ $remote_host = ibmh ]]
636	then
637	data_limit=""
638	network_to_use=""
639	class="# @ class = $queue"
640	environment=""
641	rset="# @ rset = RSET_MCM_AFFINITY"
642	task_affinity="# @ task_affinity = core(1)"
643	elif [[ $remote_host = ibmkisti ]]
644	then
645	network_to_use="# @ network.MPI = sn_all,shared,US"
646	wall_clock_limit="# @ wall_clock_limit = $timestring"
647	if [[ $threads_per_task = 1 ]]
648	then
649	rset="# @ rset = RSET_MCM_AFFINITY"
650	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
651	fi
652	environment=""
653	use_shell=""
654	data_limit=""
655	image_size=""
656	elif [[ $remote_host = ibmku ]]
657	then
658	execute_in_shell="#!/usr/bin/ksh"
659	use_shell="# @ shell = /usr/bin/ksh"
660	consumable_memory=""
661	environment=""
662	network_to_use="# @ network.mpi = sn_all,shared,us"
663	data_limit=""
664	image_size=""
665	elif [[ $remote_host = ibms ]]
666	then
667	network_to_use="# @ network.mpi = csss,shared,us"
668	fi
669
670	cat > $job_to_send << %%END%%
671	$execute_in_shell
672	$use_shell
673
674	# @ job_type = parallel
675	# @ job_name = $job_name
676	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
677	# @ output = $remote_dayfile
678	# @ error = $remote_dayfile
679	$wall_clock_limit
680	$image_size
681	$class
682	$environment
683	$network_to_use
684	$data_limit
685	$rset
686	$mcm_affinity_options
687	$task_affinity
688	$notification
689	$notify_user
690
691	%%END%%
692
693	if (( nodes > 0 ))
694	then
695
696	if [[ $remote_host != ibmkisti ]]
697	then
698
699	cat >> $job_to_send << %%END%%
700	# @ node = $nodes
701	# @ tasks_per_node = $processes_per_node
702	# @ node_usage = $node_usage
703	# @ queue
704
705	%%END%%
706
707	else
708
709	cat >> $job_to_send << %%END%%
710	# @ total_tasks = $mpi_tasks
711	# @ blocking = unlimited
712	# @ queue
713
714	%%END%%
715
716	fi
717
718	else
719
720	cat >> $job_to_send << %%END%%
721	# @ blocking = unlimited
722	# @ total_tasks = $numprocs
723	# @ node_usage = $node_usage
724	# @ queue
725
726	%%END%%
727
728	fi
729
730	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
731	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
732	then
733	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
734	fi
735
736	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
737	then
738
739	cat > $job_to_send << %%END%%
740	#!/bin/ksh
741
742	# @ job_type = serial
743	# @ node_usage = $node_usage
744	# @ job_name = palm
745	# @ wall_clock_limit = ${timestring},$timestring
746	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
747	# @ output = $remote_dayfile
748	# @ error = $remote_dayfile
749	$class
750	$notification
751
752	# @ queue
753
754	%%END%%
755
756	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
757	then
758
759	if [[ $numprocs != 0 ]]
760	then
761	cat > $job_to_send << %%END%%
762	#!/bin/bash
763	#PBS -N $job_name
764	#PBS -l walltime=$timestring
765	#PBS -l nodes=$nodes:ppn=$processes_per_node
766	#PBS -o $remote_dayfile
767	#PBS -j oe
768	#PBS -q $queue
769
770	$module_calls
771
772	%%END%%
773
774	else
775
776	continue
777
778	fi
779
780	elif [[ $remote_host = lccrayf ]]
781	then
782
783	if [[ $numprocs != 0 ]]
784	then
785	cat > $job_to_send << %%END%%
786	#!/bin/bash -l
787	#SBATCH -J $job_name
788	#SBATCH -t $timestring
789	#SBATCH -N $nodes
790	#SBATCH --ntasks-per-node=$processes_per_node
791	#SBATCH -p $queue
792	#SBATCH -o $remote_dayfile
793	#SBATCH -e $remote_dayfile
794
795	$init_cmds
796	$module_calls
797
798	%%END%%
799
800	else
801	cat > $job_to_send << %%END%%
802	#!/bin/bash -l
803	#SBATCH -J $job_name
804	#SBATCH -t $timestring
805	#SBATCH -l ncpus=1
806	#SBATCH -l pmem=${memory}mb
807	#SBATCH -m abe
808	#SBATCH -o $remote_dayfile
809	#SBATCH -e $remote_dayfile
810
811	$init_cmds
812	$module_calls
813
814	%%END%%
815
816	fi
817
818	elif [[ $remote_host = lcflow ]]
819	then
820	if [ $memory -gt 1800 ]; then
821	use_himem=""
822	else
823	use_himem="#"
824	fi
825	if [[ $numprocs != 0 ]]
826	then
827	pe_set="#$ -pe impi41 $numprocs"
828	else
829	pe_set="#$ -pe impi41 1"
830	fi
831	if [[ $queue = default ]]
832	then
833	queue_set=""
834	else
835	queue_set="#$ -q $queue"
836	fi
837	[[ "$disc_space" = "" ]] && disc_space=50
838
839	cat > $job_to_send << %%END%%
840	#!/bin/bash
841	#$ -S /bin/bash
842	#$ -N $job_name
843	#$ -cwd
844	#$ -l h_rt=$timestring
845	#$ -l h_vmem=${memory}M
846	#$ -o $remote_dayfile
847	#$ -j y
848	$pe_set
849	#$ -R y
850	${use_himem}#$ -l highmem=true
851	#$ -l h_fsize=${disc_space}G
852	$queue_set
853
854	%%END%%
855
856	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
857	then
858
859	if [[ $numprocs != 0 ]]
860	then
861	cat > $job_to_send << %%END%%
862	#!/bin/ksh
863	#PBS -N $job_name
864	#PBS -l walltime=$timestring
865	#PBS -l ncpus=$numprocs
866	#PBS -l pmem=${memory}mb
867	#PBS -o $remote_dayfile
868	#PBS -l nodes=$nodes:ppn=${processes_per_node}
869	#PBS -j oe
870
871	mpd &
872
873	%%END%%
874
875	else
876	cat > $job_to_send << %%END%%
877	#!/bin/ksh
878	#PBS -N $job_name
879	#PBS -l walltime=$timestring
880	#PBS -l ncpus=1
881	#PBS -l pmem=${memory}mb
882	#PBS -o $remote_dayfile
883	#PBS -j oe
884
885	%%END%%
886
887	fi
888
889	elif [[ $remote_host = lckiaps ]]
890	then
891
892	if [[ $numprocs != 0 ]]
893	then
894	cat > $job_to_send << %%END%%
895	#!/bin/ksh
896	#PBS -N $job_name
897	#PBS -l walltime=$timestring
898	#PBS -l select=1:ncpus=$numprocs
899	#PBS -l pmem=${memory}mb
900	#PBS -q $queue
901	#PBS -o $remote_dayfile
902	#PBS -j oe
903	#PBS -V
904
905	%%END%%
906
907	else
908	cat > $job_to_send << %%END%%
909	#!/bin/ksh
910	#PBS -N $job_name
911	#PBS -l walltime=$timestring
912	#PBS -l ncpus=1
913	#PBS -l pmem=${memory}mb
914	#PBS -o $remote_dayfile
915	#PBS -j oe
916
917	%%END%%
918
919	fi
920
921	elif [[ $remote_host = lcyon ]]
922	then
923
924	if [[ $numprocs != 0 ]]
925	then
926	cat > $job_to_send << %%END%%
927	#!/bin/ksh
928	#PBS -N $job_name
929	#PBS -l walltime=$timestring
930	#PBS -l ncpus=$numprocs
931	#PBS -l pmem=${memory}mb
932	#PBS -o $remote_dayfile
933	#PBS -j oe
934
935	%%END%%
936
937	else
938	cat > $job_to_send << %%END%%
939	#!/bin/ksh
940	#PBS -N $job_name
941	#PBS -l walltime=$timestring
942	#PBS -l ncpus=1
943	#PBS -l pmem=${memory}mb
944	#PBS -o $remote_dayfile
945	#PBS -j oe
946
947	%%END%%
948
949	fi
950
951	elif [[ $remote_host = lcxe6 ]]
952	then
953
954	if [[ $numprocs != 0 ]]
955	then
956	cat > $job_to_send << %%END%%
957	#!/bin/ksh
958	#PBS -S /bin/ksh
959	#PBS -N $job_name
960	#PBS -A $project_account
961	#PBS -j oe
962	#PBS -l walltime=$timestring
963	#PBS -l mppwidth=${numprocs}
964	#PBS -l mppnppn=${processes_per_node}
965	#PBS -m abe
966	#PBS -o $remote_dayfile
967	$email_directive
968
969	$init_cmds
970	$module_calls
971
972	%%END%%
973
974	else
975	cat > $job_to_send << %%END%%
976	#!/bin/ksh
977	#PBS -S /bin/ksh
978	#PBS -N $job_name
979	#PBS -A $project_account
980	#PBS -j oe
981	#PBS -l walltime=$timestring
982	#PBS -l ncpus=1
983	#PBS -l pmem=${memory}mb
984	#PBS -m abe
985	$email_directive
986	#PBS -o $remote_dayfile
987
988	$init_cmds
989	$module_calls
990
991	%%END%%
992
993	fi
994
995	elif [[ $remote_host = lckyoto ]]
996	then
997
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	# @\$-o $remote_dayfile
1001	# @\$-eo -oi
1002	# @\$-lP 16
1003	# @\$-lp 1
1004	# @\$-lm 28gb -llm unlimited -ls unlimited
1005	# @\$-q $queue
1006	# @\$-Pvn abs_pack
1007	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1008	#. /thin/local/etc/setprofile/intel-11.0.sh
1009	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1010	. ~/.myprofile
1011	#. /home2/t/t51254/palm/current_version/myprofile
1012	#. /thin/apps/pgi/mpi.sh
1013	#
1014	env
1015	#
1016	set -x
1017
1018	%%END%%
1019
1020	elif [[ $remote_host = lcxt5m ]]
1021	then
1022
1023	if [[ $numprocs != 0 ]]
1024	then
1025	cat > $job_to_send << %%END%%
1026	#!/bin/ksh
1027	#PBS -S /bin/ksh
1028	#PBS -N $job_name
1029	#PBS -j oe
1030	#PBS -l walltime=$timestring
1031	#PBS -l mppwidth=${numprocs}
1032	#PBS -l mppnppn=${processes_per_node}
1033	#PBS -m abe
1034	#PBS -o $remote_dayfile
1035
1036	$init_cmds
1037	$module_calls
1038
1039	%%END%%
1040
1041	else
1042	cat > $job_to_send << %%END%%
1043	#!/bin/ksh
1044	#PBS -S /bin/ksh
1045	#PBS -N $job_name
1046	#PBS -j oe
1047	#PBS -l walltime=$timestring
1048	#PBS -l ncpus=1
1049	#PBS -l pmem=${memory}mb
1050	#PBS -m abe
1051	#PBS -o $remote_dayfile
1052
1053	$init_cmds
1054	$module_calls
1055
1056	%%END%%
1057
1058	fi
1059
1060	elif [[ $remote_host = lckyuh ]]
1061	then
1062	cat > $job_to_send << %%END%%
1063	#!/bin/bash
1064	#PJM -L "rscgrp=$queue"
1065	#PJM -L "node=$nodes"
1066	#PJM --mpi "proc=$numprocs"
1067	#PJM -L "elapse=$timestring"
1068	#PJM -o $remote_dayfile
1069	#PJM -j
1070	#PJM -X
1071	#PJM --no-stging
1072
1073	export LANG=en_US.UTF-8
1074	%%END%%
1075
1076	elif [[ $remote_host = lckyut ]]
1077	then
1078	cat > $job_to_send << %%END%%
1079	#!/bin/bash
1080	#PJM -L "rscgrp=$queue"
1081	#PJM -L "vnode=$numprocs"
1082	#PJM -L "vnode-core=1"
1083	#PJM -L "elapse=$timestring"
1084	#PJM --mpi proc=$numprocs
1085	#PJM -o $remote_dayfile
1086	#PJM -j
1087	#PJM -X
1088	#PJM --no-stging
1089
1090	export LANG=en_US.UTF-8
1091	%%END%%
1092
1093	elif [[ $remote_host = nech ]]
1094	then
1095
1096	if (( nodes > 1 ))
1097	then
1098	cat > $job_to_send << %%END%%
1099	#!/bin/ksh
1100	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1101	#PBS -l ${qsubmem}=${Memory}gb
1102	#PBS -b $nodes
1103	#PBS -o $remote_dayfile
1104	#PBS -N palm
1105	#PBS -j o
1106	#PBS -T mpisx
1107
1108	%%END%%
1109
1110	elif [[ $numprocs != 0 ]]
1111	then
1112	cat > $job_to_send << %%END%%
1113	#!/bin/ksh
1114	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1115	#PBS -l ${qsubmem}=${Memory}gb
1116	#PBS -o $remote_dayfile
1117	#PBS -N palm
1118	#PBS -j o
1119
1120	%%END%%
1121
1122	else
1123	cat > $job_to_send << %%END%%
1124	#!/bin/ksh
1125	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1126	#PBS -o $remote_dayfile
1127	#PBS -j o
1128
1129	%%END%%
1130
1131	fi
1132
1133	elif [[ $remote_host = lctit ]]
1134	then
1135	cat > $job_to_send << %%END%%
1136	#!/bin/ksh
1137	$init_cmds
1138	$module_calls
1139
1140	%%END%%
1141
1142	# SET OPTIONS FOR SUBMIT-COMMAND
1143	if [[ $tasks_per_node != $processes_per_node ]]
1144	then
1145	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1146	else
1147	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1148	fi
1149
1150	else
1151
1152	cat > $job_to_send << %%END%%
1153	# @\$-q ${queue}
1154	# @\$-l${qsubtime} $timestring
1155	# @\$-l${qsubmem} ${memory}mb
1156	# @\$-o $remote_dayfile
1157	# @\$-eo
1158
1159	%%END%%
1160
1161	fi
1162
1163
1164	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1165	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1166	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1167	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1168	then
1169	echo "set +vx" >> $job_to_send
1170	echo "trap '" >> $job_to_send
1171	echo "set +vx" >> $job_to_send
1172	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1173	then
1174	if [[ $remote_host = ibmh ]]
1175	then
1176	return_queue=c1
1177	elif [[ $remote_host = ibmkisti ]]
1178	then
1179	return_queue=class.1-2
1180	elif [[ $remote_host = ibmku ]]
1181	then
1182	return_queue=sdbg2
1183	elif [[ $remote_host = ibms ]]
1184	then
1185	return_queue=p_normal
1186	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1187	then
1188	return_queue=dataq
1189	elif [[ $remote_host = lckiaps ]]
1190	then
1191	return_queue=express
1192	elif [[ $remote_host = lckyuh ]]
1193	then
1194	return_queue=cx-single
1195	elif [[ $remote_host = lckyut ]]
1196	then
1197	return_queue=cx-single
1198	else
1199	return_queue=unknown
1200	fi
1201
1202	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1203	then
1204
1205	if [[ $remote_host = ibmku ]]
1206	then
1207	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1208	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1209	else
1210	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1211	fi
1212	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1213	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1214	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1215	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1216	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1217	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1218	if [[ $host != "ibmh" ]]
1219	then
1220	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1221	fi
1222	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1223	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1224
1225	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1226	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1227
1228	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1229	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1230	if [[ $remote_host = ibmku ]]
1231	then
1232	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1233	fi
1234	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1235
1236	elif [[ $remote_host = nech ]]
1237	then
1238	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1239	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1240	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1241	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1242	echo "#PBS -j o" >> $job_to_send
1243	echo " " >> $job_to_send
1244	echo "set -x" >> $job_to_send
1245	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1246	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1247	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1248	echo "%%END%%" >> $job_to_send
1249
1250	elif [[ $remote_host = lckyuh ]]
1251	then
1252	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1253	echo "#!/bin/bash" >> $job_to_send
1254	echo "#PJM -L \"node=1\"" >> $job_to_send
1255	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1256	echo "#PJM --no-stging" >> $job_to_send
1257	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1258	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1259	echo "#PJM -j" >> $job_to_send
1260	echo " " >> $job_to_send
1261	echo "export LANG=en_US.UTF-8" >> $job_to_send
1262	echo "set -x" >> $job_to_send
1263	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1264	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1265	echo "%%END%%" >> $job_to_send
1266
1267	elif [[ $remote_host = lckyut ]]
1268	then
1269	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1270	echo "#!/bin/bash" >> $job_to_send
1271	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1272	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1273	echo "#PJM --no-stging" >> $job_to_send
1274	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1275	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1276	echo "#PJM -j" >> $job_to_send
1277	echo " " >> $job_to_send
1278	echo "export LANG=en_US.UTF-8" >> $job_to_send
1279	echo "set -x" >> $job_to_send
1280	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1281	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1282	echo "%%END%%" >> $job_to_send
1283
1284	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1285	then
1286	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1287	echo "#!/bin/bash" >> $job_to_send
1288	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1289	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1290	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1291	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1292	echo "#PBS -j oe" >> $job_to_send
1293	echo " " >> $job_to_send
1294	echo "set -x" >> $job_to_send
1295	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1296	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1297	echo "%%END%%" >> $job_to_send
1298
1299	elif [[ $remote_host = lcflow ]]
1300	then
1301	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1302	echo "#!/bin/bash" >> $job_to_send
1303	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1304	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1305	echo "SGEPREFIX -cwd" >> $job_to_send
1306	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1307	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1308	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1309	echo "SGEPREFIX -j y" >> $job_to_send
1310	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1311	echo " " >> $job_to_send
1312	echo "set -x" >> $job_to_send
1313	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1314	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1315	echo "" >> $job_to_send
1316	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1317	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1318	echo "rm -f scpjob.${identifier}" >> $job_to_send
1319	echo "%%END%%" >> $job_to_send
1320	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1321	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1322
1323	else
1324
1325	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1326	echo "# @\\\$-q $return_queue" >> $job_to_send
1327	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1328	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1329	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1330	then
1331	echo "# @\$-l mpp_p=0" >> $job_to_send
1332	fi
1333	echo '# @\$-lF 10mb' >> $job_to_send
1334	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1335	echo '# @\\\$-eo' >> $job_to_send
1336	echo " " >> $job_to_send
1337	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1338	then
1339	echo "set +vx" >> $job_to_send
1340	echo ". .profile" >> $job_to_send
1341	fi
1342	echo "set -x" >> $job_to_send
1343	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1344	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1345	echo "%%END%%" >> $job_to_send
1346	fi
1347
1348	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1349	then
1350	echo "llsubmit scpjob.$identifier" >> $job_to_send
1351	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1352	then
1353	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1354	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1355	then
1356	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1357	elif [[ $remote_host = t3es ]]
1358	then
1359	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1360	elif [[ $remote_host = lckiaps ]]
1361	then
1362	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1363	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1364	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1365	elif [[ $remote_host = lckyu* ]]
1366	then
1367	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1368	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1369	elif [[ $remote_host = lcflow ]]
1370	then
1371	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1372	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1373	else
1374	echo "$submcom scpjob.$identifier" >> $job_to_send
1375	fi
1376	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1377	then
1378	echo "rm scpjob.$identifier" >> $job_to_send
1379	fi
1380	if [[ $remote_host = nech ]]
1381	then
1382	echo "cd -" >> $job_to_send
1383	fi
1384	else
1385	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1386	# ??? funktioniert das ÃŒberhaupt noch ???
1387	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1388	fi
1389	echo "set -x" >> $job_to_send
1390	echo " ' exit" >> $job_to_send
1391	echo "set -x" >> $job_to_send
1392	fi
1393
1394
1395
1396	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1397	cat $file_to_send >> $job_to_send
1398
1399	if [[ $remote_host = ibm ]]
1400	then
1401	echo " " >> $job_to_send
1402	echo "exit" >> $job_to_send
1403	fi
1404
1405	# REMOVE JOB-FILE
1406	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1407	then
1408	echo " " >> $job_to_send
1409	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1410	fi
1411
1412
1413	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1414	if [[ $no_submit = false ]]
1415	then
1416	if [[ $remote_host != $local_host ]]
1417	then
1418	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1419	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1420	then
1421	job_catalog_save=$job_catalog
1422	job_catalog=job_queue
1423	elif [[ $remote_host = nech ]]
1424	then
1425	job_catalog_save=$job_catalog
1426	job_catalog=/hpf/b/${remote_user}/job_queue
1427	fi
1428	if [[ $remote_host = nech ]]
1429	then
1430	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1431	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1432	else
1433	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1434	fi
1435	if [[ $? = 1 ]]
1436	then
1437	locat=scp; exit
1438	fi
1439	if [[ $remote_host = ibms ]]
1440	then
1441	job_catalog=$job_catalog_save
1442	fi
1443	[[ $verify = true ]] && printf "\n >>> finished\n"
1444	else
1445	eval job_catalog=$job_catalog
1446	cp $job_to_send ${job_catalog}/$job_on_remhost
1447	fi
1448
1449
1450
1451	# START NQS- / LOADLEVELER-JOB
1452	if [[ $remote_host != $local_host ]]
1453	then
1454	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1455
1456	if [[ $remote_host = ibmku ]]
1457	then
1458	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1459	elif [[ $remote_host = lcflow ]]
1460	then
1461	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1462	else
1463	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1464	fi
1465
1466	[[ $verify = true ]] && printf " >>> o.k.\n"
1467	else
1468	cd $job_catalog
1469	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1470	then
1471	eval $submcom $job_on_remhost
1472	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1473	then
1474	chmod u+x $job_on_remhost
1475	eval $submcom $job_on_remhost
1476	elif [[ $local_host = nech ]]
1477	then
1478	if [[ $queue = default ]]
1479	then
1480	eval $submcom $job_on_remhost
1481	else
1482	eval $submcom -q $queue $job_on_remhost
1483	fi
1484	else
1485	qsub $job_on_remhost
1486	fi
1487
1488	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1489	# AT THE END OF THE JOB
1490	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1491	then
1492	rm $job_on_remhost
1493	fi
1494	cd - > /dev/null
1495	fi
1496	fi
1497
1498
1499
1500	# FINAL ACTIONS
1501	if [[ $no_submit = false ]]
1502	then
1503	rm -f $job_to_send
1504	fi
1505	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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