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source: palm/trunk/SCRIPTS/subjob @ 1289

Last change on this file since 1289 was 1289, checked in by raasch, 11 years ago
script comments translated to English version update to 3.10
Property svn:keywords set to `Id Rev`
File size: 50.2 KB

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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# German comments translated to English
26	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
27	#
28	# Former revisions:
29	# -----------------
30	# $Id: subjob 1289 2014-03-04 07:12:34Z raasch $
31	#
32	# 1279 2014-01-28 12:10:14Z raasch
33	# node calculation modified due to changes in mrun (tasks_per_node must not be
34	# an integral divisor of numprocs any more)
35	#
36	# 1274 2014-01-09 13:14:54Z heinze
37	# adjustments for lccrayh
38	#
39	# 1266 2013-12-11 12:07:34Z heinze
40	# further adjustments for lccrayb (use msub instead of qsub)
41	#
42	# 1264 2013-12-09 12:46:09Z fricke
43	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
44	#
45	# 1262 2013-12-09 10:57:20Z fricke
46	# further adjustments for lccrayb
47	#
48	# 1260 2013-12-04 12:48:04Z raasch
49	# jaboticaba admitted
50	#
51	# 1255 2013-11-07 14:43:35Z raasch
52	# further adjustments for lccrayb
53	#
54	# 1224 2013-09-16 07:27:23Z raasch
55	# first adjustments for lccrayb
56	#
57	# 1202 2013-07-10 16:22:07Z witha
58	# adjustments for Forwind cluster (lcflow)
59	#
60	# 1199 2013-07-05 14:52:22Z raasch
61	# adjustments for CSC Helsinki (lccrayf)
62	#
63	# use of cluster/express queue enabled (ibmh)
64	# vinessa added (imuk)
65	#
66	# 1103 2013-02-20 02:15:53Z raasch
67	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
68	# instead typeset -L/R),
69	# further adjustments for lckyuh
70	#
71	# 2013-02-10 01:47:43Z raasch
72	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
73	# and for Forwind cluster (lcflow)
74	#
75	# 1094 2013-02-03 01:52:12Z raasch
76	# new option -P for explicit setting of ssh/scp port,
77	# decalpha parts (yonsei) removed
78	#
79	# 2013-02-02 07:06:13Z raasch
80	# adjustments for Kyushu-University computing center (lckyut - tatara)
81	# old changelog messages removed
82	#
83	# 1046 2012-11-09 14:38:45Z maronga
84	# code put under GPL (PALM 3.9)
85	#
86	# 08/07/94 - Siggi - first version finished
87	# 29/06/94 - Siggi - script development started
88	#--------------------------------------------------------------------------------#
89	# subjob - script for automatic generation and submission of batch-job files
90	# for various batch queuing systems
91	#--------------------------------------------------------------------------------#
92
93
94	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
95	delete_dayfile=false
96	email_notification=none
97	group_number=none
98	locat=normal
99	no_default_queue=none
100	no_submit=false
101	job_catalog="~/job_queue"
102	job_name=none
103	local_user=$LOGNAME
104	node_usage=shared
105	numprocs=0
106	punkte="..........................................................."
107	submcom=qsub
108	queue=default
109	remote_host=none
110	remote_user=""
111	verify=true
112
113	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
114	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
115
116
117
118	# ERROR HANDLING
119	# IN CASE OF EXIT:
120	trap 'if [[ $locat != normal ]]
121	then
122	case $locat in
123	(option) printf "\n --> available optios can be displayed"
124	printf " by typing:"
125	printf "\n \"subjob ?\" \n";;
126	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
127	(*) printf "\n +++ unknown error"
128	printf "\n please inform S. Raasch!\n"
129	esac
130	[[ -f $job_to_send ]] && rm $job_to_send
131	printf "\n\n+++ SUBJOB killed \n\n"
132	fi' exit
133
134
135	# IN CASE OF TERMINAL-BREAK:
136	trap '[[ -f $job_to_send ]] && rm $job_to_send
137	printf "\n\n+++ SUBJOB killed \n\n"
138	exit
139	' 2
140
141
142
143
144	# DETERMINE NAME OF LOCAL HOST
145	local_host=$(hostname)
146
147
148
149	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
150	# IS ADMITTED AT ALL)
151	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
152	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
153	case $local_host in
154	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
155	(atmos) local_addres=172.20.25.35; local_host=lcide;;
156	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
157	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
158	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
159	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
160	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
161	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
162	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
163	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
164	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
165	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
166	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
167	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
168	(cs*) local_addres=136.172.44.131; local_host=nech;;
169	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
170	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
171	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
172	(node*) local_addres=165.132.26.61 local_host=lck;;
173	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
174	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
175	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
176	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
177	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
178	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
179	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
180	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
181	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
182	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
183	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
184	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
185	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
186	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
187	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
188	(meller) local_addres=134.106.74.155; local_host=lcfor;;
189	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
190	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
191	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
192	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
193	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
194	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
195	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
196	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
197	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
198	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
199	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
200	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
201	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
202	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
203	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
204	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
205	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
206	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
207	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
208	(*) printf "\n +++ \"$local_host\" unknown";
209	printf "\n please contact the PALM group at IMUK";
210	locat=parameter; exit;;
211	esac
212
213
214
215	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
216	remote_host=$local_host
217
218
219
220
221	# READ THE SHELLSCRIPT-OPTIONS
222	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
223	do
224	case $option in
225	(c) job_catalog=$OPTARG;;
226	(d) delete_dayfile=true;;
227	(D) no_submit=true;;
228	(e) email_notification=$OPTARG;;
229	(g) group_number=$OPTARG;;
230	(h) remote_host=$OPTARG;;
231	(m) memory=$OPTARG;;
232	(n) job_name=$OPTARG;;
233	(N) node_usage=$OPTARG;;
234	(O) threads_per_task=$OPTARG;;
235	(P) scp_port=$OPTARG;;
236	(q) no_default_queue=$OPTARG;;
237	(t) cputime=$OPTARG;;
238	(T) tasks_per_node=$OPTARG;;
239	(u) remote_user=$OPTARG;;
240	(v) verify=false;;
241	(X) numprocs=$OPTARG;;
242	(\?) printf "\n +++ Option $OPTARG unknown \n";
243	locat=option; exit;;
244	esac
245	done
246
247
248	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
249	(( to_shift = $OPTIND - 1 ))
250	shift $to_shift; file_to_send=$1
251
252
253	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
254	if [ "$1" = "?" ]
255	then
256	(printf "\n *** subjob can be called as follows:\n"
257	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
258	printf "\n Description of available options:\n"
259	printf "\n Option Description Default-Value"
260	printf "\n -c job-input- and output-catalog ~/job_queue"
261	printf "\n -d no job-protocol will be created ---"
262	printf "\n -D only the job-file will be created ---"
263	printf "\n -h execution host, available hosts: $remote_host"
264	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
265	printf "\n lckiaps, lctit, nech"
266	printf "\n -m memory demand per process in MByte ---"
267	printf "\n -n jobname <jobdatei>"
268	printf "\n -O threads per task (for OpenMP usage) 1"
269	printf "\n -P ssh/scp port default port"
270	printf "\n -q job-queue to be used default"
271	printf "\n -t allowed cpu-time in seconds ---"
272	printf "\n -T tasks per node (on parallel hosts) ---"
273	printf "\n -u username on execution host from .netrc"
274	printf "\n -v no prompt for confirmation ---"
275	printf "\n -X # of processors (on parallel hosts) 1"
276	printf "\n "
277	printf "\n The only possible positional parameter is <jobfile>:"
278	printf "\n The complete NQS-job must be provided here."
279	printf "\n <jobfile>=? creates this outline\n\n") \| more
280	exit
281	fi
282
283
284
285	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
286	if [[ "$file_to_send" = "" ]]
287	then
288	printf "\n +++ job-file missing"
289	locat=parameter; exit
290	else
291	if [[ -f $file_to_send ]]
292	then
293	true
294	else
295	printf "\n +++ job-file: "
296	printf "\n $file_to_send"
297	printf "\n does not exist"
298	locat=parameter; exit
299	fi
300	fi
301
302
303
304	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
305	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
306	if [[ $job_name = none ]]
307	then
308	job_name=$file_to_send
309	fi
310	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
311	then
312	printf "\n +++ job-file name: "
313	printf "\n $job_name"
314	printf "\n must not contain \"/\"-characters"
315	locat=parameter; exit
316	fi
317
318
319
320
321	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
322	# OR IF NO HOST HAS BEEN GIVEN
323	if [[ $remote_host = none ]]
324	then
325	printf "\n +++ host missing"
326	locat=option; exit
327	else
328	case $remote_host in
329	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
330	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
331	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
332	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
333	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
334	(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
335	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
336	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
337	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
338	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
339	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
340	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
341	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
342	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
343	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
344	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
345	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
346	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
347	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
348	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
349	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
350	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
351	locat=parameter; exit;;
352	esac
353	fi
354
355
356	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
357	if [[ $no_default_queue != none ]]
358	then
359	error=false
360	ndq=$no_default_queue
361	case $remote_host in
362	(ibm) case $ndq in
363	(p690_express\|p690_standard\|p690_long) error=false;;
364	(*) error=true;;
365	esac;;
366	(ibmh) case $ndq in
367	(cluster\|express) error=false;;
368	(*) error=true;;
369	esac;;
370	(ibmkisti) case $ndq in
371	(class.32plus\|class.1-2\|class.2-32) error=false;;
372	(*) error=true;;
373	esac;;
374	(ibmku) case $ndq in
375	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
376	(*) error=true;;
377	esac;;
378	(ibms) case $ndq in
379	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
380	(*) error=true;;
381	esac;;
382	(lccrayb) case $ndq in
383	(mpp1q\|testq\|specialm1q) error=false;;
384	(*) error=true;;
385	esac;;
386	(lccrayh) case $ndq in
387	(mpp1q\|mpp1testq\|specialm1q\|dataq) error=false;;
388	(*) error=true;;
389	esac;;
390	(lccrayf) case $ndq in
391	(usup\|test*\|small\|large) error=false;;
392	(*) error=true;;
393	esac;;
394	(lcflow) case $ndq in
395	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
396	(*) error=true;;
397	esac;;
398	(lckiaps) case $ndq in
399	(express\|normal) error=false;;
400	(*) error=true;;
401	esac;;
402	(lckyoto) case $ndq in
403	(eh\|ph) error=false;;
404	(*) error=true;;
405	esac;;
406	(lckyuh) case $ndq in
407	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
408	(*) error=true;;
409	esac;;
410	(lckyut) case $ndq in
411	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
412	(*) error=true;;
413	esac;;
414	(lctit) case $ndq in
415	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
416	(*) error=true;;
417	esac;;
418	(t3eb) case $ndq in
419	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
420	(*) error=true;;
421	esac;;
422	(t3eh) case $ndq in
423	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
424	(*) error=true;;
425	esac;;
426	(t3ej2\|t3ej5) case $ndq in
427	(low\|normal\|high) error=false;;
428	(*) error=true;;
429	esac;;
430	(t3es) case $ndq in
431	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
432	(*) error=true;;
433	esac;;
434	esac
435	if [[ $error = true ]]
436	then
437	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
438	locat=parameter; exit
439	else
440	queue=$no_default_queue
441	fi
442	fi
443
444
445
446	# CHECK THE CPU-TIME
447	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
448	done=false
449	while [[ $done = false ]]
450	do
451	if (( $cputime <= 0 ))
452	then
453	printf "\n +++ wrong cpu-time or cpu-time missing"
454	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
455	printf "\n >>> "
456	read cputime 1>/dev/null 2>&1
457	else
458	done=true
459	fi
460	done
461	if [[ $remote_host = nech ]]
462	then
463	if (( tasks_per_node != 0 ))
464	then
465	(( cputime = cputime * tasks_per_node ))
466	elif [[ $numprocs != 0 ]]
467	then
468	(( cputime = cputime * numprocs ))
469	fi
470	fi
471	(( stunden = cputime / 3600 ))
472	(( resttime = cputime - stunden * 3600 ))
473	(( minuten = resttime / 60 ))
474	(( sekunden = resttime - minuten * 60 ))
475	timestring=${stunden}:${minuten}:${sekunden}
476
477
478
479	# CHECK THE MEMORY DEMAND
480	done=false
481	while [[ $done = false ]]
482	do
483	if (( memory <= 0 ))
484	then
485	printf "\n +++ wrong memory demand or memory demand missing"
486	printf "\n >>> Please type memory in MByte per process as INTEGER:"
487	printf "\n >>> "
488	read memory 1>/dev/null 2>&1
489	else
490	done=true
491	fi
492	done
493
494	if [[ $remote_host = nech ]]
495	then
496	if (( tasks_per_node != 0 ))
497	then
498	(( Memory = memory * tasks_per_node / 1000 ))
499	elif [[ $numprocs != 0 ]]
500	then
501	(( Memory = memory * numprocs / 1000 ))
502	else
503	(( Memory = memory / 1000 ))
504	fi
505	elif [[ $remote_host = lctit ]]
506	then
507	(( Memory = memory * tasks_per_node / 1000 ))
508	fi
509
510
511	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
512	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
513	then
514	(( memory = memory * threads_per_task ))
515	fi
516
517
518	# CALCULATE NUMBER OF REQUIRED NODES
519	if (( tasks_per_node != 0 ))
520	then
521	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
522	fi
523
524
525	# CALCULATE NUMBER OF PROCESSES PER NODE
526	(( processes_per_node = tasks_per_node * threads_per_task ))
527
528
529	# CALCULATE NUMBER OF MPI TASKS
530	(( mpi_tasks = numprocs / threads_per_task ))
531
532
533	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
534	if [[ "$scp_port" != "" ]]
535	then
536	PORTOPT="-P $scp_port"
537	SSH_PORTOPT="-p $scp_port"
538	fi
539
540
541	# HEADER-OUTPUT
542	if [[ $verify = true ]]
543	then
544	printf "\n\n"
545	printf "#--------------------------------------------------------------# \n"
546	spalte1=SUBJOB;spalte2=$(date)
547	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
548	printf "\| \| \n"
549	printf "\| values of parameters/options: \| \n"
550	spalte1=$(echo local_host$punkte \| cut -c-20)
551	spalte2=$punkte$local_host
552	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
553	spalte1=$(echo remote_host$punkte \| cut -c-20)
554	spalte2=$punkte$remote_host
555	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
556	spalte1=$(echo queue$punkte \| cut -c-20)
557	spalte2=$punkte$queue
558	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
559	spalte1=$(echo memory$punkte \| cut -c-20)
560	spalte2="$punkte$memory mb"
561	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
562	spalte1=$(echo cputime$punkte \| cut -c-20)
563	spalte2="$punkte$cputime sec"
564	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
565	spalte1=$(echo job_name$punkte \| cut -c-20)
566	spalte2="$punkte$job_name"
567	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
568	printf "#--------------------------------------------------------------# \n\n"
569
570
571	# QUERY CHECK
572	antwort="dummy"
573	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
574	do
575	read antwort?" >>> continue (y/n) ? "
576	done
577	if [[ $antwort = n \|\| $antwort = N ]]
578	then
579	locat=verify; exit
580	fi
581	printf "\n"
582	fi
583
584
585
586	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
587	identifier=$RANDOM
588	job_on_remhost=${job_name}_${identifier}_$local_host
589	job_to_send=job_to_send_$identifier
590	if [[ $delete_dayfile = false ]]
591	then
592	remote_dayfile=${local_host}_${job_name}_result_$identifier
593	local_dayfile=${remote_host}_${job_name}
594	else
595	remote_dayfile=/dev/null
596	fi
597
598
599
600	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
601	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
602	then
603
604	# GENERAL LOADLEVELER SETTINGS
605	execute_in_shell="#!/bin/ksh"
606	use_shell="# @ shell = /bin/ksh"
607	consumable_memory="ConsumableMemory($memory mb)"
608	class="# @ class = $queue"
609	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
610	network_to_use="# @ network.mpi = sn_all,shared,us"
611	data_limit="# @ data_limit = 1.76gb"
612	image_size="# @ image_size = 50"
613	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
614
615	if [[ $email_notification = none ]]
616	then
617	notify_user=""
618	else
619	notify_user="# @ notify_user = $email_notification"
620	if [[ $delete_dayfile = true ]]
621	then
622	notification='# @ notification = never'
623	fi
624	fi
625
626	if [[ $remote_host = ibmh ]]
627	then
628	data_limit=""
629	network_to_use=""
630	class="# @ class = $queue"
631	environment=""
632	rset="# @ rset = RSET_MCM_AFFINITY"
633	task_affinity="# @ task_affinity = core(1)"
634	elif [[ $remote_host = ibmkisti ]]
635	then
636	network_to_use="# @ network.MPI = sn_all,shared,US"
637	wall_clock_limit="# @ wall_clock_limit = $timestring"
638	if [[ $threads_per_task = 1 ]]
639	then
640	rset="# @ rset = RSET_MCM_AFFINITY"
641	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
642	fi
643	environment=""
644	use_shell=""
645	data_limit=""
646	image_size=""
647	elif [[ $remote_host = ibmku ]]
648	then
649	execute_in_shell="#!/usr/bin/ksh"
650	use_shell="# @ shell = /usr/bin/ksh"
651	consumable_memory=""
652	environment=""
653	network_to_use="# @ network.mpi = sn_all,shared,us"
654	data_limit=""
655	image_size=""
656	elif [[ $remote_host = ibms ]]
657	then
658	network_to_use="# @ network.mpi = csss,shared,us"
659	fi
660
661	cat > $job_to_send << %%END%%
662	$execute_in_shell
663	$use_shell
664
665	# @ job_type = parallel
666	# @ job_name = $job_name
667	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
668	# @ output = $remote_dayfile
669	# @ error = $remote_dayfile
670	$wall_clock_limit
671	$image_size
672	$class
673	$environment
674	$network_to_use
675	$data_limit
676	$rset
677	$mcm_affinity_options
678	$task_affinity
679	$notification
680	$notify_user
681
682	%%END%%
683
684	if (( nodes > 0 ))
685	then
686
687	if [[ $remote_host != ibmkisti ]]
688	then
689
690	cat >> $job_to_send << %%END%%
691	# @ node = $nodes
692	# @ tasks_per_node = $processes_per_node
693	# @ node_usage = $node_usage
694	# @ queue
695
696	%%END%%
697
698	else
699
700	cat >> $job_to_send << %%END%%
701	# @ total_tasks = $mpi_tasks
702	# @ blocking = unlimited
703	# @ queue
704
705	%%END%%
706
707	fi
708
709	else
710
711	cat >> $job_to_send << %%END%%
712	# @ blocking = unlimited
713	# @ total_tasks = $numprocs
714	# @ node_usage = $node_usage
715	# @ queue
716
717	%%END%%
718
719	fi
720
721	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
722	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
723	then
724	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
725	fi
726
727	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
728	then
729
730	cat > $job_to_send << %%END%%
731	#!/bin/ksh
732
733	# @ job_type = serial
734	# @ node_usage = $node_usage
735	# @ job_name = palm
736	# @ wall_clock_limit = ${timestring},$timestring
737	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
738	# @ output = $remote_dayfile
739	# @ error = $remote_dayfile
740	$class
741	$notification
742
743	# @ queue
744
745	%%END%%
746
747	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
748	then
749
750	if [[ $numprocs != 0 ]]
751	then
752	cat > $job_to_send << %%END%%
753	#!/bin/bash
754	#PBS -N $job_name
755	#PBS -l walltime=$timestring
756	#PBS -l nodes=$nodes:ppn=$processes_per_node
757	#PBS -o $remote_dayfile
758	#PBS -j oe
759	#PBS -q $queue
760
761	$module_calls
762
763	%%END%%
764
765	else
766
767	continue
768
769	fi
770
771	elif [[ $remote_host = lccrayf ]]
772	then
773
774	if [[ $numprocs != 0 ]]
775	then
776	cat > $job_to_send << %%END%%
777	#!/bin/bash -l
778	#SBATCH -J $job_name
779	#SBATCH -t $timestring
780	#SBATCH -N $nodes
781	#SBATCH --ntasks-per-node=$processes_per_node
782	#SBATCH -p $queue
783	#SBATCH -o $remote_dayfile
784	#SBATCH -e $remote_dayfile
785
786	$init_cmds
787	$module_calls
788
789	%%END%%
790
791	else
792	cat > $job_to_send << %%END%%
793	#!/bin/bash -l
794	#SBATCH -J $job_name
795	#SBATCH -t $timestring
796	#SBATCH -l ncpus=1
797	#SBATCH -l pmem=${memory}mb
798	#SBATCH -m abe
799	#SBATCH -o $remote_dayfile
800	#SBATCH -e $remote_dayfile
801
802	$init_cmds
803	$module_calls
804
805	%%END%%
806
807	fi
808
809	elif [[ $remote_host = lcflow ]]
810	then
811	if [ $memory -gt 1800 ]; then
812	use_himem=""
813	else
814	use_himem="#"
815	fi
816	if [[ $numprocs != 0 ]]
817	then
818	pe_set="#$ -pe impi41 $numprocs"
819	else
820	pe_set="#$ -pe impi41 1"
821	fi
822	if [[ $queue = default ]]
823	then
824	queue_set=""
825	else
826	queue_set="#$ -q $queue"
827	fi
828	[[ "$disc_space" = "" ]] && disc_space=50
829
830	cat > $job_to_send << %%END%%
831	#!/bin/bash
832	#$ -S /bin/bash
833	#$ -N $job_name
834	#$ -cwd
835	#$ -l h_rt=$timestring
836	#$ -l h_vmem=${memory}M
837	#$ -o $remote_dayfile
838	#$ -j y
839	$pe_set
840	#$ -R y
841	${use_himem}#$ -l highmem=true
842	#$ -l h_fsize=${disc_space}G
843	$queue_set
844
845	%%END%%
846
847	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
848	then
849
850	if [[ $numprocs != 0 ]]
851	then
852	cat > $job_to_send << %%END%%
853	#!/bin/ksh
854	#PBS -N $job_name
855	#PBS -l walltime=$timestring
856	#PBS -l ncpus=$numprocs
857	#PBS -l pmem=${memory}mb
858	#PBS -o $remote_dayfile
859	#PBS -l nodes=$nodes:ppn=${processes_per_node}
860	#PBS -j oe
861
862	mpd &
863
864	%%END%%
865
866	else
867	cat > $job_to_send << %%END%%
868	#!/bin/ksh
869	#PBS -N $job_name
870	#PBS -l walltime=$timestring
871	#PBS -l ncpus=1
872	#PBS -l pmem=${memory}mb
873	#PBS -o $remote_dayfile
874	#PBS -j oe
875
876	%%END%%
877
878	fi
879
880	elif [[ $remote_host = lckiaps ]]
881	then
882
883	if [[ $numprocs != 0 ]]
884	then
885	cat > $job_to_send << %%END%%
886	#!/bin/ksh
887	#PBS -N $job_name
888	#PBS -l walltime=$timestring
889	#PBS -l select=1:ncpus=$numprocs
890	#PBS -l pmem=${memory}mb
891	#PBS -q $queue
892	#PBS -o $remote_dayfile
893	#PBS -j oe
894	#PBS -V
895
896	%%END%%
897
898	else
899	cat > $job_to_send << %%END%%
900	#!/bin/ksh
901	#PBS -N $job_name
902	#PBS -l walltime=$timestring
903	#PBS -l ncpus=1
904	#PBS -l pmem=${memory}mb
905	#PBS -o $remote_dayfile
906	#PBS -j oe
907
908	%%END%%
909
910	fi
911
912	elif [[ $remote_host = lcyon ]]
913	then
914
915	if [[ $numprocs != 0 ]]
916	then
917	cat > $job_to_send << %%END%%
918	#!/bin/ksh
919	#PBS -N $job_name
920	#PBS -l walltime=$timestring
921	#PBS -l ncpus=$numprocs
922	#PBS -l pmem=${memory}mb
923	#PBS -o $remote_dayfile
924	#PBS -j oe
925
926	%%END%%
927
928	else
929	cat > $job_to_send << %%END%%
930	#!/bin/ksh
931	#PBS -N $job_name
932	#PBS -l walltime=$timestring
933	#PBS -l ncpus=1
934	#PBS -l pmem=${memory}mb
935	#PBS -o $remote_dayfile
936	#PBS -j oe
937
938	%%END%%
939
940	fi
941
942	elif [[ $remote_host = lcxe6 ]]
943	then
944
945	if [[ $numprocs != 0 ]]
946	then
947	cat > $job_to_send << %%END%%
948	#!/bin/ksh
949	#PBS -S /bin/ksh
950	#PBS -N $job_name
951	#PBS -A $project_account
952	#PBS -j oe
953	#PBS -l walltime=$timestring
954	#PBS -l mppwidth=${numprocs}
955	#PBS -l mppnppn=${processes_per_node}
956	#PBS -m abe
957	#PBS -o $remote_dayfile
958	$email_directive
959
960	$init_cmds
961	$module_calls
962
963	%%END%%
964
965	else
966	cat > $job_to_send << %%END%%
967	#!/bin/ksh
968	#PBS -S /bin/ksh
969	#PBS -N $job_name
970	#PBS -A $project_account
971	#PBS -j oe
972	#PBS -l walltime=$timestring
973	#PBS -l ncpus=1
974	#PBS -l pmem=${memory}mb
975	#PBS -m abe
976	$email_directive
977	#PBS -o $remote_dayfile
978
979	$init_cmds
980	$module_calls
981
982	%%END%%
983
984	fi
985
986	elif [[ $remote_host = lckyoto ]]
987	then
988
989	cat > $job_to_send << %%END%%
990	#!/bin/ksh
991	# @\$-o $remote_dayfile
992	# @\$-eo -oi
993	# @\$-lP 16
994	# @\$-lp 1
995	# @\$-lm 28gb -llm unlimited -ls unlimited
996	# @\$-q $queue
997	# @\$-Pvn abs_pack
998	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
999	#. /thin/local/etc/setprofile/intel-11.0.sh
1000	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1001	. ~/.myprofile
1002	#. /home2/t/t51254/palm/current_version/myprofile
1003	#. /thin/apps/pgi/mpi.sh
1004	#
1005	env
1006	#
1007	set -x
1008
1009	%%END%%
1010
1011	elif [[ $remote_host = lcxt5m ]]
1012	then
1013
1014	if [[ $numprocs != 0 ]]
1015	then
1016	cat > $job_to_send << %%END%%
1017	#!/bin/ksh
1018	#PBS -S /bin/ksh
1019	#PBS -N $job_name
1020	#PBS -j oe
1021	#PBS -l walltime=$timestring
1022	#PBS -l mppwidth=${numprocs}
1023	#PBS -l mppnppn=${processes_per_node}
1024	#PBS -m abe
1025	#PBS -o $remote_dayfile
1026
1027	$init_cmds
1028	$module_calls
1029
1030	%%END%%
1031
1032	else
1033	cat > $job_to_send << %%END%%
1034	#!/bin/ksh
1035	#PBS -S /bin/ksh
1036	#PBS -N $job_name
1037	#PBS -j oe
1038	#PBS -l walltime=$timestring
1039	#PBS -l ncpus=1
1040	#PBS -l pmem=${memory}mb
1041	#PBS -m abe
1042	#PBS -o $remote_dayfile
1043
1044	$init_cmds
1045	$module_calls
1046
1047	%%END%%
1048
1049	fi
1050
1051	elif [[ $remote_host = lckyuh ]]
1052	then
1053	cat > $job_to_send << %%END%%
1054	#!/bin/bash
1055	#PJM -L "rscgrp=$queue"
1056	#PJM -L "node=$nodes"
1057	#PJM --mpi "proc=$numprocs"
1058	#PJM -L "elapse=$timestring"
1059	#PJM -o $remote_dayfile
1060	#PJM -j
1061	#PJM -X
1062	#PJM --no-stging
1063
1064	export LANG=en_US.UTF-8
1065	%%END%%
1066
1067	elif [[ $remote_host = lckyut ]]
1068	then
1069	cat > $job_to_send << %%END%%
1070	#!/bin/bash
1071	#PJM -L "rscgrp=$queue"
1072	#PJM -L "vnode=$numprocs"
1073	#PJM -L "vnode-core=1"
1074	#PJM -L "elapse=$timestring"
1075	#PJM --mpi proc=$numprocs
1076	#PJM -o $remote_dayfile
1077	#PJM -j
1078	#PJM -X
1079	#PJM --no-stging
1080
1081	export LANG=en_US.UTF-8
1082	%%END%%
1083
1084	elif [[ $remote_host = nech ]]
1085	then
1086
1087	if (( nodes > 1 ))
1088	then
1089	cat > $job_to_send << %%END%%
1090	#!/bin/ksh
1091	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1092	#PBS -l ${qsubmem}=${Memory}gb
1093	#PBS -b $nodes
1094	#PBS -o $remote_dayfile
1095	#PBS -N palm
1096	#PBS -j o
1097	#PBS -T mpisx
1098
1099	%%END%%
1100
1101	elif [[ $numprocs != 0 ]]
1102	then
1103	cat > $job_to_send << %%END%%
1104	#!/bin/ksh
1105	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1106	#PBS -l ${qsubmem}=${Memory}gb
1107	#PBS -o $remote_dayfile
1108	#PBS -N palm
1109	#PBS -j o
1110
1111	%%END%%
1112
1113	else
1114	cat > $job_to_send << %%END%%
1115	#!/bin/ksh
1116	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1117	#PBS -o $remote_dayfile
1118	#PBS -j o
1119
1120	%%END%%
1121
1122	fi
1123
1124	elif [[ $remote_host = lctit ]]
1125	then
1126	cat > $job_to_send << %%END%%
1127	#!/bin/ksh
1128	$init_cmds
1129	$module_calls
1130
1131	%%END%%
1132
1133	# SET OPTIONS FOR SUBMIT-COMMAND
1134	if [[ $tasks_per_node != $processes_per_node ]]
1135	then
1136	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1137	else
1138	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1139	fi
1140
1141	else
1142
1143	cat > $job_to_send << %%END%%
1144	# @\$-q ${queue}
1145	# @\$-l${qsubtime} $timestring
1146	# @\$-l${qsubmem} ${memory}mb
1147	# @\$-o $remote_dayfile
1148	# @\$-eo
1149
1150	%%END%%
1151
1152	fi
1153
1154
1155	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1156	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1157	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1158	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1159	then
1160	echo "set +vx" >> $job_to_send
1161	echo "trap '" >> $job_to_send
1162	echo "set +vx" >> $job_to_send
1163	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1164	then
1165	if [[ $remote_host = ibmh ]]
1166	then
1167	return_queue=c1
1168	elif [[ $remote_host = ibmkisti ]]
1169	then
1170	return_queue=class.1-2
1171	elif [[ $remote_host = ibmku ]]
1172	then
1173	return_queue=sdbg2
1174	elif [[ $remote_host = ibms ]]
1175	then
1176	return_queue=p_normal
1177	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1178	then
1179	return_queue=dataq
1180	elif [[ $remote_host = lckiaps ]]
1181	then
1182	return_queue=express
1183	elif [[ $remote_host = lckyuh ]]
1184	then
1185	return_queue=cx-single
1186	elif [[ $remote_host = lckyut ]]
1187	then
1188	return_queue=cx-single
1189	else
1190	return_queue=unknown
1191	fi
1192
1193	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1194	then
1195
1196	if [[ $remote_host = ibmku ]]
1197	then
1198	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1199	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1200	else
1201	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1202	fi
1203	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1204	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1205	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1206	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1207	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1208	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1209	if [[ $host != "ibmh" ]]
1210	then
1211	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1212	fi
1213	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1214	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1215
1216	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1217	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1218
1219	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1220	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1221	if [[ $remote_host = ibmku ]]
1222	then
1223	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1224	fi
1225	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1226
1227	elif [[ $remote_host = nech ]]
1228	then
1229	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1230	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1231	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1232	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1233	echo "#PBS -j o" >> $job_to_send
1234	echo " " >> $job_to_send
1235	echo "set -x" >> $job_to_send
1236	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1237	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1238	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1239	echo "%%END%%" >> $job_to_send
1240
1241	elif [[ $remote_host = lckyuh ]]
1242	then
1243	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1244	echo "#!/bin/bash" >> $job_to_send
1245	echo "#PJM -L \"node=1\"" >> $job_to_send
1246	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1247	echo "#PJM --no-stging" >> $job_to_send
1248	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1249	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1250	echo "#PJM -j" >> $job_to_send
1251	echo " " >> $job_to_send
1252	echo "export LANG=en_US.UTF-8" >> $job_to_send
1253	echo "set -x" >> $job_to_send
1254	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1255	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1256	echo "%%END%%" >> $job_to_send
1257
1258	elif [[ $remote_host = lckyut ]]
1259	then
1260	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1261	echo "#!/bin/bash" >> $job_to_send
1262	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1263	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1264	echo "#PJM --no-stging" >> $job_to_send
1265	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1266	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1267	echo "#PJM -j" >> $job_to_send
1268	echo " " >> $job_to_send
1269	echo "export LANG=en_US.UTF-8" >> $job_to_send
1270	echo "set -x" >> $job_to_send
1271	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1272	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1273	echo "%%END%%" >> $job_to_send
1274
1275	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1276	then
1277	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1278	echo "#!/bin/bash" >> $job_to_send
1279	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1280	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1281	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1282	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1283	echo "#PBS -j oe" >> $job_to_send
1284	echo " " >> $job_to_send
1285	echo "set -x" >> $job_to_send
1286	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1287	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1288	echo "%%END%%" >> $job_to_send
1289
1290	elif [[ $remote_host = lcflow ]]
1291	then
1292	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1293	echo "#!/bin/bash" >> $job_to_send
1294	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1295	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1296	echo "SGEPREFIX -cwd" >> $job_to_send
1297	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1298	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1299	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1300	echo "SGEPREFIX -j y" >> $job_to_send
1301	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1302	echo " " >> $job_to_send
1303	echo "set -x" >> $job_to_send
1304	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1305	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1306	echo "" >> $job_to_send
1307	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1308	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1309	echo "rm -f scpjob.${identifier}" >> $job_to_send
1310	echo "%%END%%" >> $job_to_send
1311	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1312	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1313
1314	else
1315
1316	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1317	echo "# @\\\$-q $return_queue" >> $job_to_send
1318	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1319	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1320	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1321	then
1322	echo "# @\$-l mpp_p=0" >> $job_to_send
1323	fi
1324	echo '# @\$-lF 10mb' >> $job_to_send
1325	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1326	echo '# @\\\$-eo' >> $job_to_send
1327	echo " " >> $job_to_send
1328	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1329	then
1330	echo "set +vx" >> $job_to_send
1331	echo ". .profile" >> $job_to_send
1332	fi
1333	echo "set -x" >> $job_to_send
1334	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1335	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1336	echo "%%END%%" >> $job_to_send
1337	fi
1338
1339	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1340	then
1341	echo "llsubmit scpjob.$identifier" >> $job_to_send
1342	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1343	then
1344	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1345	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1346	then
1347	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1348	elif [[ $remote_host = t3es ]]
1349	then
1350	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1351	elif [[ $remote_host = lckiaps ]]
1352	then
1353	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1354	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1355	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1356	elif [[ $remote_host = lckyu* ]]
1357	then
1358	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1359	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1360	elif [[ $remote_host = lcflow ]]
1361	then
1362	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1363	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1364	else
1365	echo "$submcom scpjob.$identifier" >> $job_to_send
1366	fi
1367	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1368	then
1369	echo "rm scpjob.$identifier" >> $job_to_send
1370	fi
1371	if [[ $remote_host = nech ]]
1372	then
1373	echo "cd -" >> $job_to_send
1374	fi
1375	else
1376	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1377	# ??? funktioniert das ÃŒberhaupt noch ???
1378	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1379	fi
1380	echo "set -x" >> $job_to_send
1381	echo " ' exit" >> $job_to_send
1382	echo "set -x" >> $job_to_send
1383	fi
1384
1385
1386
1387	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1388	cat $file_to_send >> $job_to_send
1389
1390	if [[ $remote_host = ibm ]]
1391	then
1392	echo " " >> $job_to_send
1393	echo "exit" >> $job_to_send
1394	fi
1395
1396	# REMOVE JOB-FILE
1397	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1398	then
1399	echo " " >> $job_to_send
1400	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1401	fi
1402
1403
1404	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1405	if [[ $no_submit = false ]]
1406	then
1407	if [[ $remote_host != $local_host ]]
1408	then
1409	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1410	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1411	then
1412	job_catalog_save=$job_catalog
1413	job_catalog=job_queue
1414	elif [[ $remote_host = nech ]]
1415	then
1416	job_catalog_save=$job_catalog
1417	job_catalog=/hpf/b/${remote_user}/job_queue
1418	fi
1419	if [[ $remote_host = nech ]]
1420	then
1421	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1422	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1423	else
1424	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1425	fi
1426	if [[ $? = 1 ]]
1427	then
1428	locat=scp; exit
1429	fi
1430	if [[ $remote_host = ibms ]]
1431	then
1432	job_catalog=$job_catalog_save
1433	fi
1434	[[ $verify = true ]] && printf "\n >>> finished\n"
1435	else
1436	eval job_catalog=$job_catalog
1437	cp $job_to_send ${job_catalog}/$job_on_remhost
1438	fi
1439
1440
1441
1442	# START NQS- / LOADLEVELER-JOB
1443	if [[ $remote_host != $local_host ]]
1444	then
1445	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1446
1447	if [[ $remote_host = ibmku ]]
1448	then
1449	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1450	elif [[ $remote_host = lcflow ]]
1451	then
1452	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1453	else
1454	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1455	fi
1456
1457	[[ $verify = true ]] && printf " >>> o.k.\n"
1458	else
1459	cd $job_catalog
1460	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1461	then
1462	eval $submcom $job_on_remhost
1463	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1464	then
1465	chmod u+x $job_on_remhost
1466	eval $submcom $job_on_remhost
1467	elif [[ $local_host = nech ]]
1468	then
1469	if [[ $queue = default ]]
1470	then
1471	eval $submcom $job_on_remhost
1472	else
1473	eval $submcom -q $queue $job_on_remhost
1474	fi
1475	else
1476	qsub $job_on_remhost
1477	fi
1478
1479	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1480	# AT THE END OF THE JOB
1481	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1482	then
1483	rm $job_on_remhost
1484	fi
1485	cd - > /dev/null
1486	fi
1487	fi
1488
1489
1490
1491	# FINAL ACTIONS
1492	if [[ $no_submit = false ]]
1493	then
1494	rm -f $job_to_send
1495	fi
1496	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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