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source: palm/trunk/SCRIPTS/subjob @ 1198

Last change on this file since 1198 was 1197, checked in by raasch, 11 years ago
script adjustments for CSC Helsinki (lccrayf)
Property svn:keywords set to `Id Rev`
File size: 55.4 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# adjustments for CSC Helsinki (lccrayf)
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1197 2013-07-04 06:19:45Z kanani $
30	# use of cluster/express queue enabled (ibmh)
31	# vinessa added (imuk)
32	#
33	# 1103 2013-02-20 02:15:53Z raasch
34	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
35	# instead typeset -L/R),
36	# further adjustments for lckyuh
37	#
38	# 2013-02-10 01:47:43Z raasch
39	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
40	# and for Forwind cluster (lcflow)
41	#
42	# 1094 2013-02-03 01:52:12Z raasch
43	# new option -P for explicit setting of ssh/scp port,
44	# decalpha parts (yonsei) removed
45	#
46	# 2013-02-02 07:06:13Z raasch
47	# adjustments for Kyushu-University computing center (lckyut - tatara)
48	# old changelog messages removed
49	#
50	# 1046 2012-11-09 14:38:45Z maronga
51	# code put under GPL (PALM 3.9)
52	#
53	# 08/07/94 - Siggi - first version finished
54	# 29/06/94 - Siggi - script development started
55	#--------------------------------------------------------------------------------#
56	# subjob - script for automatic generation and submission of batch-job files
57	# for various batch queuing systems
58	#--------------------------------------------------------------------------------#
59
60
61	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
62	delete_dayfile=false
63	email_notification=none
64	group_number=none
65	locat=normal
66	no_default_queue=none
67	no_submit=false
68	job_catalog="~/job_queue"
69	job_name=none
70	local_user=$LOGNAME
71	node_usage=shared
72	numprocs=0
73	punkte="..........................................................."
74	submcom=qsub
75	queue=default
76	remote_host=none
77	remote_user=""
78	verify=true
79
80	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
81	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
82
83
84
85	# FEHLERBEHANDLUNG
86	# BEI EXIT:
87	trap 'if [[ $locat != normal ]]
88	then
89	case $locat in
90	(option) printf "\n --> available optios can be displayed"
91	printf " by typing:"
92	printf "\n \"subjob ?\" \n";;
93	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
94	(*) printf "\n +++ unknown error"
95	printf "\n please inform S. Raasch!\n"
96	esac
97	[[ -f $job_to_send ]] && rm $job_to_send
98	printf "\n\n+++ SUBJOB killed \n\n"
99	fi' exit
100
101
102	# BEI TERMINAL-BREAK:
103	trap '[[ -f $job_to_send ]] && rm $job_to_send
104	printf "\n\n+++ SUBJOB killed \n\n"
105	exit
106	' 2
107
108
109
110
111	# LOKALEN HOSTNAMEN FESTSTELLEN
112	local_host=$(hostname)
113
114
115
116	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
117	# UEBERHAUPT ZULAESSIG IST
118	# Note: One of the entries for "lck" or "lckordi" always has to be
119	# comment out, because the hostname (node*) is same for both machines
120	case $local_host in
121	(atmos) local_addres=172.20.25.35; local_host=lcide;;
122	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
123	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
124	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
125	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
126	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
127	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
128	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
129	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
130	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
131	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
132	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
133	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
134	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
135	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
136	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
137	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
138	(cs*) local_addres=136.172.44.131; local_host=nech;;
139	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
140	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
141	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
142	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
143	(node*) local_addres=165.132.26.61 local_host=lck;;
144	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
145	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
146	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
147	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
148	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
149	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
150	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
151	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
152	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
153	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
154	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
155	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
156	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
157	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
158	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
159	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
160	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
161	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
162	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
163	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
164	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
165	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
166	(meller) local_addres=134.106.74.155; local_host=lcfor;;
167	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
168	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
169	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
170	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
171	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
172	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
173	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
174	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
175	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
176	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
177	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
178	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
179	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
180	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
181	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
182	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
183	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
184	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
185	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
186	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
187	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
188	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
189	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
190	(*) printf "\n +++ \"$local_host\" unknown";
191	printf "\n please inform S. Raasch!";
192	locat=parameter; exit;;
193	esac
194
195
196
197	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
198	remote_host=$local_host
199
200
201
202
203	# PROZEDUROPTIONEN EINLESEN
204	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
205	do
206	case $option in
207	(c) job_catalog=$OPTARG;;
208	(d) delete_dayfile=true;;
209	(D) no_submit=true;;
210	(e) email_notification=$OPTARG;;
211	(g) group_number=$OPTARG;;
212	(h) remote_host=$OPTARG;;
213	(m) memory=$OPTARG;;
214	(n) job_name=$OPTARG;;
215	(N) node_usage=$OPTARG;;
216	(O) threads_per_task=$OPTARG;;
217	(P) scp_port=$OPTARG;;
218	(q) no_default_queue=$OPTARG;;
219	(t) cputime=$OPTARG;;
220	(T) tasks_per_node=$OPTARG;;
221	(u) remote_user=$OPTARG;;
222	(v) verify=false;;
223	(X) numprocs=$OPTARG;;
224	(\?) printf "\n +++ Option $OPTARG unknown \n";
225	locat=option; exit;;
226	esac
227	done
228
229
230	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
231	(( to_shift = $OPTIND - 1 ))
232	shift $to_shift; file_to_send=$1
233
234
235	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
236	if [ "$1" = "?" ]
237	then
238	(printf "\n *** subjob can be called as follows:\n"
239	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
240	printf "\n Description of available options:\n"
241	printf "\n Option Description Default-Value"
242	printf "\n -c job-input- and output-catalog ~/job_queue"
243	printf "\n -d no job-protocol will be created ---"
244	printf "\n -D only the job-file will be created ---"
245	printf "\n -h execution host, available hosts: $remote_host"
246	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
247	printf "\n lckiaps, lctit, nech, necriam, unics"
248	printf "\n -m memory demand per process in MByte ---"
249	printf "\n -n jobname <jobdatei>"
250	printf "\n -O threads per task (for OpenMP usage) 1"
251	printf "\n -P ssh/scp port default port"
252	printf "\n -q job-queue to be used default"
253	printf "\n -t allowed cpu-time in seconds ---"
254	printf "\n -T tasks per node (on parallel hosts) ---"
255	printf "\n -u username on execution host from .netrc"
256	printf "\n -v no prompt for confirmation ---"
257	printf "\n -X # of processors (on parallel hosts) 1"
258	printf "\n "
259	printf "\n The only possible positional parameter is <jobfile>:"
260	printf "\n The complete NQS-job must be provided here."
261	printf "\n <jobfile>=? creates this outline\n\n") \| more
262	exit
263	fi
264
265
266
267	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
268	if [[ "$file_to_send" = "" ]]
269	then
270	printf "\n +++ job-file missing"
271	locat=parameter; exit
272	else
273	if [[ -f $file_to_send ]]
274	then
275	true
276	else
277	printf "\n +++ job-file: "
278	printf "\n $file_to_send"
279	printf "\n does not exist"
280	locat=parameter; exit
281	fi
282	fi
283
284
285
286	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
287	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
288	if [[ $job_name = none ]]
289	then
290	job_name=$file_to_send
291	fi
292	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
293	then
294	printf "\n +++ job-file name: "
295	printf "\n $job_name"
296	printf "\n must not contain \"/\"-characters"
297	locat=parameter; exit
298	fi
299
300
301
302
303	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
304	# ODER WENN HOST NICHT ANGEGEBEN WURDE
305	if [[ $remote_host = none ]]
306	then
307	printf "\n +++ host missing"
308	locat=option; exit
309	else
310	case $remote_host in
311	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
312	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
313	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
314	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
315	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
316	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
317	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
318	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
319	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
320	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
321	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
322	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
323	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
324	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
325	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
326	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
327	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
328	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
329	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
330	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
331	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
332	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
333	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
334	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
335	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
336	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
337	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
338	locat=parameter; exit;;
339	esac
340	fi
341
342
343	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
344	if [[ $no_default_queue != none ]]
345	then
346	error=false
347	ndq=$no_default_queue
348	case $remote_host in
349	(ibm) case $ndq in
350	(p690_express\|p690_standard\|p690_long) error=false;;
351	(*) error=true;;
352	esac;;
353	(ibmh) case $ndq in
354	(cluster\|express) error=false;;
355	(*) error=true;;
356	esac;;
357	(ibmkisti) case $ndq in
358	(class.32plus\|class.1-2\|class.2-32) error=false;;
359	(*) error=true;;
360	esac;;
361	(ibmku) case $ndq in
362	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
363	(*) error=true;;
364	esac;;
365	(ibms) case $ndq in
366	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
367	(*) error=true;;
368	esac;;
369	(ibmy) case $ndq in
370	(parallel) error=false;;
371	(*) error=true;;
372	esac;;
373	(lccrayf) case $ndq in
374	(usup\|test*\|small\|large) error=false;;
375	(*) error=true;;
376	esac;;
377	(lcflow) case $ndq in
378	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
379	(*) error=true;;
380	esac;;
381	(lckiaps) case $ndq in
382	(express\|normal) error=false;;
383	(*) error=true;;
384	esac;;
385	(lckyoto) case $ndq in
386	(eh\|ph) error=false;;
387	(*) error=true;;
388	esac;;
389	(lckyuh) case $ndq in
390	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
391	(*) error=true;;
392	esac;;
393	(lckyut) case $ndq in
394	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
395	(*) error=true;;
396	esac;;
397	(lcsgib\|lcsgih) case $ndq in
398	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
399	(*) error=true;;
400	esac;;
401	(lctit) case $ndq in
402	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
403	(*) error=true;;
404	esac;;
405	(t3eb) case $ndq in
406	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
407	(*) error=true;;
408	esac;;
409	(necriam) case $ndq in
410	(SP\|SS\|P6) error=false;;
411	(*) error=true;;
412	esac;;
413	(t3eh) case $ndq in
414	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
415	(*) error=true;;
416	esac;;
417	(t3ej2\|t3ej5) case $ndq in
418	(low\|normal\|high) error=false;;
419	(*) error=true;;
420	esac;;
421	(t3es) case $ndq in
422	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
423	(*) error=true;;
424	esac;;
425	(unics) case $ndq in
426	(unics\|ht) error=false;;
427	(*) error=true;;
428	esac;;
429	esac
430	if [[ $error = true ]]
431	then
432	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
433	locat=parameter; exit
434	else
435	queue=$no_default_queue
436	fi
437	fi
438
439
440
441	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
442	# AUFTEILEN
443	done=false
444	while [[ $done = false ]]
445	do
446	if (( $cputime <= 0 ))
447	then
448	printf "\n +++ wrong cpu-time or cpu-time missing"
449	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
450	printf "\n >>> "
451	read cputime 1>/dev/null 2>&1
452	else
453	done=true
454	fi
455	done
456	if [[ $remote_host = nech ]]
457	then
458	if (( tasks_per_node != 0 ))
459	then
460	(( cputime = cputime * tasks_per_node ))
461	elif [[ $numprocs != 0 ]]
462	then
463	(( cputime = cputime * numprocs ))
464	fi
465	fi
466	(( stunden = cputime / 3600 ))
467	(( resttime = cputime - stunden * 3600 ))
468	(( minuten = resttime / 60 ))
469	(( sekunden = resttime - minuten * 60 ))
470	timestring=${stunden}:${minuten}:${sekunden}
471
472
473
474	# PRUEFEN DER KERNSPEICHERANFORDERUNG
475	done=false
476	while [[ $done = false ]]
477	do
478	if (( memory <= 0 ))
479	then
480	printf "\n +++ wrong memory demand or memory demand missing"
481	printf "\n >>> Please type memory in MByte per process as INTEGER:"
482	printf "\n >>> "
483	read memory 1>/dev/null 2>&1
484	else
485	done=true
486	fi
487	done
488
489	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
490	then
491	if (( tasks_per_node != 0 ))
492	then
493	(( Memory = memory * tasks_per_node / 1000 ))
494	elif [[ $numprocs != 0 ]]
495	then
496	(( Memory = memory * numprocs / 1000 ))
497	else
498	(( Memory = memory / 1000 ))
499	fi
500	elif [[ $remote_host = lctit ]]
501	then
502	(( Memory = memory * tasks_per_node / 1000 ))
503	fi
504
505
506	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
507	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
508	then
509	(( memory = memory * threads_per_task ))
510	fi
511
512
513	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
514	if (( tasks_per_node != 0 ))
515	then
516	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
517	fi
518
519
520	# Calculate number of processes per node
521	(( processes_per_node = tasks_per_node * threads_per_task ))
522
523
524	# Calculate number of MPI tasks
525	(( mpi_tasks = numprocs / threads_per_task ))
526
527
528	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
529	if [[ "$scp_port" != "" ]]
530	then
531	PORTOPT="-P $scp_port"
532	SSH_PORTOPT="-p $scp_port"
533	fi
534
535
536	# HEADER-AUSGABE
537	if [[ $verify = true ]]
538	then
539	printf "\n\n"
540	printf "#--------------------------------------------------------------# \n"
541	spalte1=SUBJOB;spalte2=$(date)
542	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
543	printf "\| \| \n"
544	printf "\| values of parameters/options: \| \n"
545	spalte1=$(echo local_host$punkte \| cut -c-20)
546	spalte2=$punkte$local_host
547	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
548	spalte1=$(echo remote_host$punkte \| cut -c-20)
549	spalte2=$punkte$remote_host
550	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
551	spalte1=$(echo queue$punkte \| cut -c-20)
552	spalte2=$punkte$queue
553	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
554	spalte1=$(echo memory$punkte \| cut -c-20)
555	spalte2="$punkte$memory mb"
556	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
557	spalte1=$(echo cputime$punkte \| cut -c-20)
558	spalte2="$punkte$cputime sec"
559	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
560	spalte1=$(echo job_name$punkte \| cut -c-20)
561	spalte2="$punkte$job_name"
562	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
563	printf "#--------------------------------------------------------------# \n\n"
564
565
566	# KONTROLLABFRAGE, OB ALLES O.K.
567	antwort="dummy"
568	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
569	do
570	read antwort?" >>> continue (y/n) ? "
571	done
572	if [[ $antwort = n \|\| $antwort = N ]]
573	then
574	locat=verify; exit
575	fi
576	printf "\n"
577	fi
578
579
580
581	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
582	kennung=$RANDOM
583	job_on_remhost=${job_name}_${kennung}_$local_host
584	job_to_send=job_to_send_$kennung
585	if [[ $delete_dayfile = false ]]
586	then
587	remote_dayfile=${local_host}_${job_name}_result_$kennung
588	local_dayfile=${remote_host}_${job_name}
589	else
590	remote_dayfile=/dev/null
591	fi
592
593
594
595	# Generate the batch job scripts (qsub/msub/LoadLeveler)
596	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
597	then
598
599	# General LoadLeveler settings
600	execute_in_shell="#!/bin/ksh"
601	use_shell="# @ shell = /bin/ksh"
602	consumable_memory="ConsumableMemory($memory mb)"
603	class="# @ class = $queue"
604	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
605	network_to_use="# @ network.mpi = sn_all,shared,us"
606	data_limit="# @ data_limit = 1.76gb"
607	image_size="# @ image_size = 50"
608	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
609
610	if [[ $email_notification = none ]]
611	then
612	notify_user=""
613	else
614	notify_user="# @ notify_user = $email_notification"
615	if [[ $delete_dayfile = true ]]
616	then
617	notification='# @ notification = never'
618	fi
619	fi
620
621	if [[ $remote_host = ibmh ]]
622	then
623	data_limit=""
624	network_to_use=""
625	class="# @ class = $queue"
626	environment=""
627	rset="# @ rset = RSET_MCM_AFFINITY"
628	task_affinity="# @ task_affinity = core(1)"
629	elif [[ $remote_host = ibmkisti ]]
630	then
631	network_to_use="# @ network.MPI = sn_all,shared,US"
632	wall_clock_limit="# @ wall_clock_limit = $timestring"
633	if [[ $threads_per_task = 1 ]]
634	then
635	rset="# @ rset = RSET_MCM_AFFINITY"
636	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
637	fi
638	environment=""
639	use_shell=""
640	data_limit=""
641	image_size=""
642	elif [[ $remote_host = ibmku ]]
643	then
644	execute_in_shell="#!/usr/bin/ksh"
645	use_shell="# @ shell = /usr/bin/ksh"
646	consumable_memory=""
647	environment=""
648	network_to_use="# @ network.mpi = sn_all,shared,us"
649	data_limit=""
650	image_size=""
651	elif [[ $remote_host = ibms ]]
652	then
653	network_to_use="# @ network.mpi = csss,shared,us"
654	elif [[ $remote_host = ibmy ]]
655	then
656	consumable_memory=""
657	network_to_use=""
658	fi
659
660	cat > $job_to_send << %%END%%
661	$execute_in_shell
662	$use_shell
663
664	# @ job_type = parallel
665	# @ job_name = $job_name
666	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
667	# @ output = $remote_dayfile
668	# @ error = $remote_dayfile
669	$wall_clock_limit
670	$image_size
671	$class
672	$environment
673	$network_to_use
674	$data_limit
675	$rset
676	$mcm_affinity_options
677	$task_affinity
678	$notification
679	$notify_user
680
681	%%END%%
682
683	if (( nodes > 0 ))
684	then
685
686	if [[ $remote_host != ibmkisti ]]
687	then
688
689	cat >> $job_to_send << %%END%%
690	# @ node = $nodes
691	# @ tasks_per_node = $processes_per_node
692	# @ node_usage = $node_usage
693	# @ queue
694
695	%%END%%
696
697	else
698
699	cat >> $job_to_send << %%END%%
700	# @ total_tasks = $mpi_tasks
701	# @ blocking = unlimited
702	# @ queue
703
704	%%END%%
705
706	fi
707
708	else
709
710	if [[ $remote_host != ibmy ]]
711	then
712
713	cat >> $job_to_send << %%END%%
714	# @ blocking = unlimited
715	# @ total_tasks = $numprocs
716	# @ node_usage = $node_usage
717	# @ queue
718
719	%%END%%
720
721	else
722
723	cat >> $job_to_send << %%END%%
724	# @ node = 1
725	# @ total_tasks = $numprocs
726	# @ queue
727
728	%%END%%
729
730	fi
731
732	fi
733
734	# workaround because of silly job filter on ibmkisti
735	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
736	then
737	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
738	fi
739
740	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
741	then
742
743	cat > $job_to_send << %%END%%
744	#!/bin/ksh
745
746	# @ job_type = serial
747	# @ node_usage = $node_usage
748	# @ job_name = palm
749	# @ wall_clock_limit = ${timestring},$timestring
750	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
751	# @ output = $remote_dayfile
752	# @ error = $remote_dayfile
753	$class
754	$notification
755
756	# @ queue
757
758	%%END%%
759
760	elif [[ $remote_host = lccrayf ]]
761	then
762
763	if [[ $numprocs != 0 ]]
764	then
765	cat > $job_to_send << %%END%%
766	#!/bin/bash -l
767	#SBATCH -J $job_name
768	#SBATCH -t $timestring
769	#SBATCH -N $nodes
770	#SBATCH --ntasks-per-node=$processes_per_node
771	#SBATCH -p $queue
772	#SBATCH -o $remote_dayfile
773	#SBATCH -e $remote_dayfile
774
775	$init_cmds
776	$module_calls
777
778	%%END%%
779
780	else
781	cat > $job_to_send << %%END%%
782	#!/bin/bash -l
783	#SBATCH -J $job_name
784	#SBATCH -t $timestring
785	#SBATCH -l ncpus=1
786	#SBATCH -l pmem=${memory}mb
787	#SBATCH -m abe
788	#SBATCH -o $remote_dayfile
789	#SBATCH -e $remote_dayfile
790
791	$init_cmds
792	$module_calls
793
794	%%END%%
795
796	fi
797
798	elif [[ $remote_host = lcfimm ]]
799	then
800
801	if [[ $numprocs != 0 ]]
802	then
803	cat > $job_to_send << %%END%%
804	#!/bin/ksh
805	#PBS -N $job_name
806	#PBS -A $project_account
807	#PBS -l walltime=$timestring
808	#PBS -l nodes=${nodes}:ppn=$processes_per_node
809	#PBS -l pmem=${memory}mb
810	#PBS -m abe
811	#PBS -o $remote_dayfile
812	#PBS -j oe
813	mpd &
814
815	%%END%%
816
817	else
818	cat > $job_to_send << %%END%%
819	#!/bin/ksh
820	#PBS -N $job_name
821	#PBS -A $project_account
822	#PBS -l walltime=$timestring
823	#PBS -l ncpus=1
824	#PBS -l pmem=${memory}mb
825	#PBS -m abe
826	#PBS -o $remote_dayfile
827	#PBS -j oe
828
829	%%END%%
830
831	fi
832
833	elif [[ $remote_host = lcflow ]]
834	then
835	if [ $memory -gt 1900 ]; then
836	use_himem=""
837	else
838	use_himem="#"
839	fi
840	if [[ $numprocs != 0 ]]
841	then
842	pe_set="#$ -pe impi $numprocs"
843	else
844	pe_set="#$ -pe impi 1"
845	fi
846	if [[ $queue = default ]]
847	then
848	queue_set=""
849	else
850	queue_set="#$ -q $queue"
851	fi
852	[[ "$disc_space" = "" ]] && disc_space=50
853
854	cat > $job_to_send << %%END%%
855	#!/bin/bash
856	#$ -S /bin/bash
857	#$ -N $job_name
858	#$ -cwd
859	#$ -l h_rt=$timestring
860	#$ -l h_vmem=${memory}M
861	#$ -o $remote_dayfile
862	#$ -j y
863	$pe_set
864	#$ -R y
865	${use_himem}#$ -l highmem=true
866	#$ -l h_fsize=${disc_space}G
867	$queue_set
868
869	%%END%%
870
871	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
872	then
873
874	if [[ $numprocs != 0 ]]
875	then
876	cat > $job_to_send << %%END%%
877	#!/bin/ksh
878	#PBS -N $job_name
879	#PBS -l walltime=$timestring
880	#PBS -l ncpus=$numprocs
881	#PBS -l pmem=${memory}mb
882	#PBS -o $remote_dayfile
883	#PBS -l nodes=$nodes:ppn=${processes_per_node}
884	#PBS -j oe
885
886	mpd &
887
888	%%END%%
889
890	else
891	cat > $job_to_send << %%END%%
892	#!/bin/ksh
893	#PBS -N $job_name
894	#PBS -l walltime=$timestring
895	#PBS -l ncpus=1
896	#PBS -l pmem=${memory}mb
897	#PBS -o $remote_dayfile
898	#PBS -j oe
899
900	%%END%%
901
902	fi
903
904	elif [[ $remote_host = lckiaps ]]
905	then
906
907	if [[ $numprocs != 0 ]]
908	then
909	cat > $job_to_send << %%END%%
910	#!/bin/ksh
911	#PBS -N $job_name
912	#PBS -l walltime=$timestring
913	#PBS -l select=1:ncpus=$numprocs
914	#PBS -l pmem=${memory}mb
915	#PBS -q $queue
916	#PBS -o $remote_dayfile
917	#PBS -j oe
918	#PBS -V
919
920	%%END%%
921
922	else
923	cat > $job_to_send << %%END%%
924	#!/bin/ksh
925	#PBS -N $job_name
926	#PBS -l walltime=$timestring
927	#PBS -l ncpus=1
928	#PBS -l pmem=${memory}mb
929	#PBS -o $remote_dayfile
930	#PBS -j oe
931
932	%%END%%
933
934	fi
935
936	elif [[ $remote_host = lcyon ]]
937	then
938
939	if [[ $numprocs != 0 ]]
940	then
941	cat > $job_to_send << %%END%%
942	#!/bin/ksh
943	#PBS -N $job_name
944	#PBS -l walltime=$timestring
945	#PBS -l ncpus=$numprocs
946	#PBS -l pmem=${memory}mb
947	#PBS -o $remote_dayfile
948	#PBS -j oe
949
950	%%END%%
951
952	else
953	cat > $job_to_send << %%END%%
954	#!/bin/ksh
955	#PBS -N $job_name
956	#PBS -l walltime=$timestring
957	#PBS -l ncpus=1
958	#PBS -l pmem=${memory}mb
959	#PBS -o $remote_dayfile
960	#PBS -j oe
961
962	%%END%%
963
964	fi
965
966	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
967	then
968
969	if [[ "$sgi_feature" != "" ]]
970	then
971	feature_directive="#PBS -l feature=$sgi_feature"
972	else
973	feature_directive=""
974	fi
975
976	if [[ $queue = dataq \|\| $queue = permq ]]
977	then
978	feature_directive="#PBS -l feature=data"
979	fi
980
981	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
982	then
983	queue_directive="#PBS -q $queue"
984	else
985	queue_directive=""
986	fi
987
988	if [[ $email_notification = none ]]
989	then
990	email_directive=""
991	else
992	email_directive="#PBS -M $email_notification"
993	fi
994
995	if [[ $numprocs != 0 ]]
996	then
997	cat > $job_to_send << %%END%%
998	#!/bin/bash
999	#PBS -N $job_name
1000	#PBS -l walltime=$timestring
1001	#PBS -l nodes=$nodes:ppn=${processes_per_node}
1002	#PBS -l naccesspolicy=$node_usage
1003	#PBS -o $remote_dayfile
1004	#PBS -j oe
1005	$feature_directive
1006	$queue_directive
1007	$email_directive
1008
1009	eval \`/sw/swdist/bin/modulesinit\`
1010	#. /usr/share/modules/init/bash
1011	$init_cmds
1012	$module_calls
1013
1014	echo ld_library_path=\$LD_LIBRARY_PATH
1015
1016	%%END%%
1017
1018	else
1019	cat > $job_to_send << %%END%%
1020	#PBS -S /bin/bash
1021	#PBS -N $job_name
1022	#PBS -l walltime=$timestring
1023	#PBS -l ncpus=1
1024	#PBS -o $remote_dayfile
1025	#PBS -j oe
1026	$queue_directive
1027	$email_directive
1028
1029	eval \`/sw/swdist/bin/modulesinit\`
1030	#. /usr/share/modules/init/bash
1031	$init_cmds
1032	$module_calls
1033
1034	%%END%%
1035
1036	fi
1037
1038	elif [[ $remote_host = lcxe6 ]]
1039	then
1040
1041	if [[ $numprocs != 0 ]]
1042	then
1043	cat > $job_to_send << %%END%%
1044	#!/bin/ksh
1045	#PBS -S /bin/ksh
1046	#PBS -N $job_name
1047	#PBS -A $project_account
1048	#PBS -j oe
1049	#PBS -l walltime=$timestring
1050	#PBS -l mppwidth=${numprocs}
1051	#PBS -l mppnppn=${processes_per_node}
1052	#PBS -m abe
1053	#PBS -o $remote_dayfile
1054	$email_directive
1055
1056	$init_cmds
1057	$module_calls
1058
1059	%%END%%
1060
1061	else
1062	cat > $job_to_send << %%END%%
1063	#!/bin/ksh
1064	#PBS -S /bin/ksh
1065	#PBS -N $job_name
1066	#PBS -A $project_account
1067	#PBS -j oe
1068	#PBS -l walltime=$timestring
1069	#PBS -l ncpus=1
1070	#PBS -l pmem=${memory}mb
1071	#PBS -m abe
1072	$email_directive
1073	#PBS -o $remote_dayfile
1074
1075	$init_cmds
1076	$module_calls
1077
1078	%%END%%
1079
1080	fi
1081
1082	elif [[ $remote_host = lckyoto ]]
1083	then
1084
1085	cat > $job_to_send << %%END%%
1086	#!/bin/ksh
1087	# @\$-o $remote_dayfile
1088	# @\$-eo -oi
1089	# @\$-lP 16
1090	# @\$-lp 1
1091	# @\$-lm 28gb -llm unlimited -ls unlimited
1092	# @\$-q $queue
1093	# @\$-Pvn abs_pack
1094	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1095	#. /thin/local/etc/setprofile/intel-11.0.sh
1096	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1097	. ~/.myprofile
1098	#. /home2/t/t51254/palm/current_version/myprofile
1099	#. /thin/apps/pgi/mpi.sh
1100	#
1101	env
1102	#
1103	set -x
1104
1105	%%END%%
1106
1107	elif [[ $remote_host = lcxt5m ]]
1108	then
1109
1110	if [[ $numprocs != 0 ]]
1111	then
1112	cat > $job_to_send << %%END%%
1113	#!/bin/ksh
1114	#PBS -S /bin/ksh
1115	#PBS -N $job_name
1116	#PBS -j oe
1117	#PBS -l walltime=$timestring
1118	#PBS -l mppwidth=${numprocs}
1119	#PBS -l mppnppn=${processes_per_node}
1120	#PBS -m abe
1121	#PBS -o $remote_dayfile
1122
1123	$init_cmds
1124	$module_calls
1125
1126	%%END%%
1127
1128	else
1129	cat > $job_to_send << %%END%%
1130	#!/bin/ksh
1131	#PBS -S /bin/ksh
1132	#PBS -N $job_name
1133	#PBS -j oe
1134	#PBS -l walltime=$timestring
1135	#PBS -l ncpus=1
1136	#PBS -l pmem=${memory}mb
1137	#PBS -m abe
1138	#PBS -o $remote_dayfile
1139
1140	$init_cmds
1141	$module_calls
1142
1143	%%END%%
1144
1145	fi
1146
1147	elif [[ $remote_host = lckyuh ]]
1148	then
1149	cat > $job_to_send << %%END%%
1150	#!/bin/bash
1151	#PJM -L "rscgrp=$queue"
1152	#PJM -L "node=$nodes"
1153	#PJM --mpi "proc=$numprocs"
1154	#PJM -L "elapse=$timestring"
1155	#PJM -o $remote_dayfile
1156	#PJM -j
1157	#PJM -X
1158	#PJM --no-stging
1159
1160	export LANG=en_US.UTF-8
1161	%%END%%
1162
1163	elif [[ $remote_host = lckyut ]]
1164	then
1165	cat > $job_to_send << %%END%%
1166	#!/bin/bash
1167	#PJM -L "rscgrp=$queue"
1168	#PJM -L "vnode=$numprocs"
1169	#PJM -L "vnode-core=1"
1170	#PJM -L "elapse=$timestring"
1171	#PJM --mpi proc=$numprocs
1172	#PJM -o $remote_dayfile
1173	#PJM -j
1174	#PJM -X
1175	#PJM --no-stging
1176
1177	export LANG=en_US.UTF-8
1178	%%END%%
1179
1180	elif [[ $remote_host = nech ]]
1181	then
1182
1183	if (( nodes > 1 ))
1184	then
1185	cat > $job_to_send << %%END%%
1186	#!/bin/ksh
1187	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1188	#PBS -l ${qsubmem}=${Memory}gb
1189	#PBS -b $nodes
1190	#PBS -o $remote_dayfile
1191	#PBS -N palm
1192	#PBS -j o
1193	#PBS -T mpisx
1194
1195	%%END%%
1196
1197	elif [[ $numprocs != 0 ]]
1198	then
1199	cat > $job_to_send << %%END%%
1200	#!/bin/ksh
1201	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1202	#PBS -l ${qsubmem}=${Memory}gb
1203	#PBS -o $remote_dayfile
1204	#PBS -N palm
1205	#PBS -j o
1206
1207	%%END%%
1208
1209	else
1210	cat > $job_to_send << %%END%%
1211	#!/bin/ksh
1212	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1213	#PBS -o $remote_dayfile
1214	#PBS -j o
1215
1216	%%END%%
1217
1218	fi
1219
1220	elif [[ $remote_host = necriam ]]
1221	then
1222
1223	if (( nodes > 1 ))
1224	then
1225	cat > $job_to_send << %%END%%
1226	#!/bin/ksh
1227	#PBS -b $nodes
1228	#PBS -o $remote_dayfile
1229	#PBS -N $job_name
1230	#PBS -j o
1231	#PBS -v MPIPROGINV=YES
1232
1233	%%END%%
1234
1235	elif [[ $numprocs != 0 ]]
1236	then
1237	cat > $job_to_send << %%END%%
1238	#!/bin/ksh
1239	#PBS -q ${queue}
1240	#PBS -o $remote_dayfile
1241	#PBS -N $job_name
1242	#PBS -j o
1243	#PBS -v MPIPROGINV=YES
1244
1245	%%END%%
1246
1247	else
1248	cat > $job_to_send << %%END%%
1249	#!/bin/ksh
1250	#PBS -o $remote_dayfile
1251	#PBS -j o
1252
1253	%%END%%
1254
1255	fi
1256
1257	elif [[ $remote_host = lctit ]]
1258	then
1259	cat > $job_to_send << %%END%%
1260	#!/bin/ksh
1261	$init_cmds
1262	$module_calls
1263
1264	%%END%%
1265
1266	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1267	if [[ $tasks_per_node != $processes_per_node ]]
1268	then
1269	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1270	else
1271	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1272	fi
1273
1274	else
1275
1276	cat > $job_to_send << %%END%%
1277	# @\$-q ${queue}
1278	# @\$-l${qsubtime} $timestring
1279	# @\$-l${qsubmem} ${memory}mb
1280	# @\$-o $remote_dayfile
1281	# @\$-eo
1282
1283	%%END%%
1284
1285	fi
1286
1287
1288	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1289	# BEI EXIT VERANLASSEN
1290	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1291	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1292	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1293	then
1294	echo "set +vx" >> $job_to_send
1295	echo "trap '" >> $job_to_send
1296	echo "set +vx" >> $job_to_send
1297	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1298	then
1299	if [[ $remote_host = ibmh ]]
1300	then
1301	return_queue=c1
1302	elif [[ $remote_host = ibmkisti ]]
1303	then
1304	return_queue=class.1-2
1305	elif [[ $remote_host = ibmku ]]
1306	then
1307	return_queue=sdbg2
1308	elif [[ $remote_host = ibms ]]
1309	then
1310	return_queue=p_normal
1311	elif [[ $remote_host = ibmy ]]
1312	then
1313	return_queue=serial
1314	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1315	then
1316	return_queue=serialq
1317	elif [[ $remote_host = necriam ]]
1318	then
1319	return_queue=SP
1320	elif [[ $remote_host = lckiaps ]]
1321	then
1322	return_queue=express
1323	elif [[ $remote_host = lckyuh ]]
1324	then
1325	return_queue=cx-single
1326	elif [[ $remote_host = lckyut ]]
1327	then
1328	return_queue=cx-single
1329	else
1330	return_queue=unknown
1331	fi
1332
1333	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1334	then
1335
1336	if [[ $remote_host = ibmku ]]
1337	then
1338	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1339	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1340	else
1341	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1342	fi
1343	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1344	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1345	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1346	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1347	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1348	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1349	if [[ $host != "ibmh" ]]
1350	then
1351	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1352	fi
1353	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1354	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1355
1356	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1357	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1358
1359	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1360	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1361	if [[ $remote_host = ibmku ]]
1362	then
1363	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1364	fi
1365	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1366
1367	elif [[ $remote_host = nech ]]
1368	then
1369	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1370	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1371	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1372	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1373	echo "#PBS -j o" >> $job_to_send
1374	echo " " >> $job_to_send
1375	echo "set -x" >> $job_to_send
1376	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1377	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1378	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1379	echo "%%END%%" >> $job_to_send
1380
1381	elif [[ $remote_host = necriam ]]
1382	then
1383	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1384	echo "#PBS -q $return_queue" >> $job_to_send
1385	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1386	echo "#PBS -j o" >> $job_to_send
1387	echo " " >> $job_to_send
1388	echo "set -x" >> $job_to_send
1389	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1390	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1391	echo "%%END%%" >> $job_to_send
1392
1393	elif [[ $remote_host = lckyuh ]]
1394	then
1395	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1396	echo "#!/bin/bash" >> $job_to_send
1397	echo "#PJM -L \"node=1\"" >> $job_to_send
1398	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1399	echo "#PJM --no-stging" >> $job_to_send
1400	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1401	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1402	echo "#PJM -j" >> $job_to_send
1403	echo " " >> $job_to_send
1404	echo "export LANG=en_US.UTF-8" >> $job_to_send
1405	echo "set -x" >> $job_to_send
1406	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1407	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1408	echo "%%END%%" >> $job_to_send
1409
1410	elif [[ $remote_host = lckyut ]]
1411	then
1412	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1413	echo "#!/bin/bash" >> $job_to_send
1414	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1415	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1416	echo "#PJM --no-stging" >> $job_to_send
1417	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1418	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1419	echo "#PJM -j" >> $job_to_send
1420	echo " " >> $job_to_send
1421	echo "export LANG=en_US.UTF-8" >> $job_to_send
1422	echo "set -x" >> $job_to_send
1423	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1424	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1425	echo "%%END%%" >> $job_to_send
1426
1427	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1428	then
1429	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1430	echo "#!/bin/bash" >> $job_to_send
1431	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1432	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1433	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1434	echo "#PBS -l feature=data" >> $job_to_send
1435	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1436	echo "#PBS -j oe" >> $job_to_send
1437	echo " " >> $job_to_send
1438	echo ". /usr/share/modules/init/bash" >> $job_to_send
1439	echo "set -x" >> $job_to_send
1440	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1441	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1442	echo "%%END%%" >> $job_to_send
1443
1444	elif [[ $remote_host = lcflow ]]
1445	then
1446	echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
1447	echo "#!/bin/bash" >> $job_to_send
1448	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1449	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1450	echo "SGEPREFIX -cwd" >> $job_to_send
1451	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1452	echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send
1453	echo "SGEPREFIX -j y" >> $job_to_send
1454	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
1455	echo " " >> $job_to_send
1456	echo "set -x" >> $job_to_send
1457	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1458	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1459	echo "" >> $job_to_send
1460	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1461	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1462	echo "rm -f scpjob.${kennung}" >> $job_to_send
1463	echo "%%END%%" >> $job_to_send
1464	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
1465	echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
1466
1467	else
1468
1469	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1470	echo "# @\\\$-q $return_queue" >> $job_to_send
1471	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1472	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1473	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1474	then
1475	echo "# @\$-l mpp_p=0" >> $job_to_send
1476	fi
1477	echo '# @\$-lF 10mb' >> $job_to_send
1478	# echo '# @\$-o /dev/null' >> $job_to_send
1479	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1480	echo '# @\\\$-eo' >> $job_to_send
1481	echo " " >> $job_to_send
1482	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1483	then
1484	echo "set +vx" >> $job_to_send
1485	echo ". .profile" >> $job_to_send
1486	fi
1487	echo "set -x" >> $job_to_send
1488	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1489	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1490	echo "%%END%%" >> $job_to_send
1491	fi
1492
1493	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1494	then
1495	echo "llsubmit scpjob.$kennung" >> $job_to_send
1496	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1497	then
1498	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1499	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1500	echo "msub scpjob.$kennung" >> $job_to_send
1501	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1502	then
1503	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1504	elif [[ $remote_host = t3es ]]
1505	then
1506	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1507	elif [[ $remote_host = lckiaps ]]
1508	then
1509	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1510	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1511	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1512	elif [[ $remote_host = lckyu* ]]
1513	then
1514	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1515	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1516	elif [[ $remote_host = lcflow ]]
1517	then
1518	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1519	echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
1520	else
1521	echo "$submcom scpjob.$kennung" >> $job_to_send
1522	fi
1523	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1524	then
1525	echo "rm scpjob.$kennung" >> $job_to_send
1526	fi
1527	if [[ $remote_host = nech ]]
1528	then
1529	echo "cd -" >> $job_to_send
1530	fi
1531	else
1532	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1533	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1534	fi
1535	echo "set -x" >> $job_to_send
1536	echo " ' exit" >> $job_to_send
1537	echo "set -x" >> $job_to_send
1538	fi
1539
1540
1541
1542	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1543	cat $file_to_send >> $job_to_send
1544
1545	if [[ $remote_host = ibm ]]
1546	then
1547	echo " " >> $job_to_send
1548	echo "exit" >> $job_to_send
1549	fi
1550
1551	# remove job file
1552	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1553	then
1554	echo " " >> $job_to_send
1555	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1556	fi
1557
1558
1559
1560	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1561	if [[ -z $remote_user ]]
1562	then
1563	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1564	then
1565	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1566	fi
1567	fi
1568
1569
1570
1571	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1572	if [[ $no_submit = false ]]
1573	then
1574	if [[ $remote_host != $local_host ]]
1575	then
1576	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1577	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1578	then
1579	job_catalog_save=$job_catalog
1580	job_catalog=job_queue
1581	elif [[ $remote_host = nech ]]
1582	then
1583	job_catalog_save=$job_catalog
1584	job_catalog=/hpf/b/${remote_user}/job_queue
1585	fi
1586	if [[ $remote_host = nech ]]
1587	then
1588	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1589	# TRANSFERIERT WERDEN
1590	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1591	else
1592	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1593	fi
1594	if [[ $? = 1 ]]
1595	then
1596	locat=scp; exit
1597	fi
1598	if [[ $remote_host = ibms ]]
1599	then
1600	job_catalog=$job_catalog_save
1601	fi
1602	[[ $verify = true ]] && printf "\n >>> finished\n"
1603	else
1604	eval job_catalog=$job_catalog
1605	cp $job_to_send ${job_catalog}/$job_on_remhost
1606	fi
1607
1608
1609
1610	# NQS- BZW. LOADLEVELER-JOB STARTEN
1611	if [[ $remote_host != $local_host ]]
1612	then
1613	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1614
1615	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1616	then
1617	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1618	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1619	elif [[ $remote_host = ibmku ]]
1620	then
1621	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1622	elif [[ $remote_host = lcflow ]]
1623	then
1624	ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1625	else
1626	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1627	fi
1628
1629	[[ $verify = true ]] && printf " >>> o.k.\n"
1630	else
1631	cd $job_catalog
1632	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1633	then
1634	eval $submcom $job_on_remhost
1635	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1636	then
1637	chmod u+x $job_on_remhost
1638	eval $submcom $job_on_remhost
1639	elif [[ $local_host = nech ]]
1640	then
1641	if [[ $queue = default ]]
1642	then
1643	eval $submcom $job_on_remhost
1644	else
1645	eval $submcom -q $queue $job_on_remhost
1646	fi
1647	else
1648	qsub $job_on_remhost
1649	fi
1650
1651	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1652	# only at the end of the job.
1653	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1654	then
1655	rm $job_on_remhost
1656	fi
1657	cd - > /dev/null
1658	fi
1659	fi
1660
1661
1662
1663	# ABSCHLUSSARBEITEN
1664
1665	if [[ $no_submit = false ]]
1666	then
1667	rm -f $job_to_send
1668	fi
1669	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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