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source: palm/trunk/SCRIPTS/subjob @ 1046

Last change on this file since 1046 was 1046, checked in by maronga, 12 years ago
put scripts and utilities under GPL
Property svn:keywords set to `Id Rev`
File size: 52.9 KB

Line
1	#!/bin/ksh
2	#--------------------------------------------------------------------------------#
3	# This file is part of PALM.
4	#
5	# PALM is free software: you can redistribute it and/or modify it under the terms
6	# of the GNU General Public License as published by the Free Software Foundation,
7	# either version 3 of the License, or (at your option) any later version.
8	#
9	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
10	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
11	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
12	#
13	# You should have received a copy of the GNU General Public License along with
14	# PALM. If not, see <http://www.gnu.org/licenses/>.
15	#
16	# Copyright 1997-2012 Leibniz University Hannover
17	#--------------------------------------------------------------------------------#
18	#
19	# Current revisions:
20	# -----------------
21	# code put under GPL (PALM 3.9)
22	#
23	# Former revisions:
24	# -----------------
25	# $Id: subjob 1046 2012-11-09 14:38:45Z maronga $
26
27	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
28	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
29	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
30	# Host zurueckgeschickt werden sollen
31
32
33	# letzte Aenderung:
34	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
35	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
36	# 06/02/98 - Siggi - berte validiert
37	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
38	# moeglich
39	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
40	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
41	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
42	# allgemeine Anpassungen fuer ibm-Rechner
43	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
44	# Ruecktransfer des Jobprotokolls fuer diese
45	# Maschine abgeschaltet
46	# 31/10/02 - Siggi - berni validiert
47	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
48	# 08/11/02 - Siggi - quanero validiert
49	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
50	# 23/01/03 - Siggi - hostname nobel changed to nobela
51	# 06/02/03 - Siggi - gregale validated
52	# 12/02/03 - Siggi - orkan and maestro validated
53	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
54	# 12/03/03 - Siggi - nec at DKRZ validated
55	# 13/03/03 - Siggi - new nqs resource variable Memory
56	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
57	# node
58	# 11/04/03 - Siggi - network on ibms has attribute "shared"
59	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
60	# cxxl added to ibmh
61	# 29/08/03 - Siggi - changes in job queues and communication system on
62	# ibms
63	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
64	# 30/10/03 - Siggi - nech is not supported any more
65	# 10/11/03 - Siggi - nech2 renamed to nech
66	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
67	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
68	# 31/03/04 - Siggi - new option -N for node usage
69	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
70	# due to error in ssh installation (otherwise a prompt
71	# for the password appears)
72	# 23/07/04 - Siggi - changes due to the new berni configuration
73	# (federation switch)
74	# 01/09/04 - Gerald new job-classes on hanni
75	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
76	# 23/11/04 - Siggi - new job class cdata on hanni and berni
77	# 03/12/04 - Siggi - notification on ibm switched of in case of
78	# delete_dayfile = true, node usage in cdev set to
79	# shared
80	# 16/02/05 - Gerald hababai validated
81	# 29/03/05 - Micha - new job class channi on hanni
82	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
83	# on ibms
84	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
85	# p_normal
86	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
87	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
88	# "sn_all", new job class cexp
89	# 08/09/05 - Siggi - IP-address of gfdl3 changed
90	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
91	# hurricane (with -X0)
92	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
93	# added
94	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
95	# 09/02/06 - Siggi - ibmy admitted
96	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
97	# 13/04/06 - Siggi - ostria admitted
98	# 18/04/06 - Siggi - new option -O for OpenMP usage
99	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
100	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
101	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
102	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
103	# 28/11/06 - Siggi - levanto admitted
104	# 13/02/07 - Siggi - hpmuk releated code removed
105	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
106	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
107	# 27/07/07 - Siggi - autan admitted
108	# 03/08/07 - Marcus- lcfimm admitted
109	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
110	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
111	# suggestions
112	# 19/10/07 - Marcus- add new optional argument -g group_number
113	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
114	# 30/10/07 - Marcus- further adjustments for queues on lctit
115	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
116	# Science)
117	# 14/07/08 - Siggi - adjustments for lcsgih
118	# 23/09/08 - Gerald- paesano admitted
119	# 02/10/08 - Siggi - PBS adjustments for lcxt4
120	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
121	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
122	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
123	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
124	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
125	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
126	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
127	# now run on the data nodes (feature=data)
128	# 25/08/09 - BjornM- adapted for lck
129	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
130	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
131	# set in the config file by the user
132	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
133	# adding special1q
134	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
135	# 16/10/09 - Carolin-adding permq
136	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
137	# 03/02/10 - Siggi - bug in serial jobs removed
138	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
139	# notification)
140	# 01/03/10 - Siggi - loading of modules controlled by environment variable
141	# module_calls
142	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
143	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
144	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
145	# lcxt4
146	# 08/12/10 - Siggi - initialization of the module command changed for
147	# SGI-ICE/lcsgi
148	# adjustments for Kyushu Univ. (lcrte, ibmku)
149	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
150	# institute of technology (lctit)
151	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
152	# 06/03/11 - Siggi - adjustments for ibmkisti
153	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
154	# 03/04/11 - Micha - added lckordi
155	# 17/08/11 - Siggi - hicegate0 added
156	# 18/08/11 - Siggi - workaround on lcsgi in order to avoid appends to file
157	# last_job_transfer_protocol
158	# 21/08/11 - Siggi - inferno admitted
159	# 29/11/11 - Siggi - adjustments for lcsgih/lcsgib queues, pingui admitted
160	# 21/12/11 - Theres- solano admitted
161	# 31/01/12 - Matthias - adjustments for ibmh
162	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
163	# bugfixes for the parameter file check, initial
164	# commands on ssh calls sourced out to .mrun.config
165	# 02/10/12 - Siggi - adjustments for lcsb
166	# 01/11/12 - Siggi - adjustments for lckiaps
167
168
169
170	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
171	delete_dayfile=false
172	email_notification=none
173	group_number=none
174	locat=normal
175	no_default_queue=none
176	no_submit=false
177	job_catalog="~/job_queue"
178	job_name=none
179	local_user=$LOGNAME
180	node_usage=shared
181	numprocs=0
182	punkte="..........................................................."
183	submcom=qsub
184	queue=default
185	remote_host=none
186	remote_user=""
187	verify=true
188
189	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
190	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
191	typeset -L20 spalte1
192	typeset -R40 spalte2
193	typeset -L60 spalte3
194
195
196
197	# FEHLERBEHANDLUNG
198	# BEI EXIT:
199	trap 'if [[ $locat != normal ]]
200	then
201	case $locat in
202	(option) printf "\n --> available optios can be displayed"
203	printf " by typing:"
204	printf "\n \"subjob ?\" \n";;
205	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
206	(*) printf "\n +++ unknown error"
207	printf "\n please inform S. Raasch!\n"
208	esac
209	[[ -f $job_to_send ]] && rm $job_to_send
210	printf "\n\n+++ SUBJOB killed \n\n"
211	fi' exit
212
213
214	# BEI TERMINAL-BREAK:
215	trap '[[ -f $job_to_send ]] && rm $job_to_send
216	printf "\n\n+++ SUBJOB killed \n\n"
217	exit
218	' 2
219
220
221
222
223	# LOKALEN HOSTNAMEN FESTSTELLEN
224	local_host=$(hostname)
225
226
227
228	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
229	# UEBERHAUPT ZULAESSIG IST
230	# Note: One of the entries for "lck" or "lckordi" always has to be
231	# comment out, because the hostname (node*) is same for both machines
232	case $local_host in
233	(atmos) local_addres=172.20.25.35; local_host=lcide;;
234	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
235	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
236	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
237	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
238	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
239	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
240	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
241	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
242	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
243	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
244	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
245	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
246	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
247	(cs*) local_addres=136.172.44.131; local_host=nech;;
248	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
249	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
250	(node*) local_addres=165.132.26.61 local_host=lck;;
251	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
252	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
253	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
254	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
255	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
256	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
257	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
258	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
259	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
260	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
261	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
262	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
263	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
264	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
265	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
266	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
267	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
268	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
269	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
270	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
271	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
272	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
273	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
274	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
275	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
276	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
277	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
278	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
279	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
280	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
281	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
282	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
283	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
284	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
285	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
286	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
287	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
288	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
289	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
290	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
291	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
292	(*) printf "\n +++ \"$local_host\" unknown";
293	printf "\n please inform S. Raasch!";
294	locat=parameter; exit;;
295	esac
296
297
298
299	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
300	remote_host=$local_host
301
302
303
304
305	# PROZEDUROPTIONEN EINLESEN
306	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
307	do
308	case $option in
309	(c) job_catalog=$OPTARG;;
310	(d) delete_dayfile=true;;
311	(D) no_submit=true;;
312	(e) email_notification=$OPTARG;;
313	(g) group_number=$OPTARG;;
314	(h) remote_host=$OPTARG;;
315	(m) memory=$OPTARG;;
316	(n) job_name=$OPTARG;;
317	(N) node_usage=$OPTARG;;
318	(O) threads_per_task=$OPTARG;;
319	(q) no_default_queue=$OPTARG;;
320	(t) cputime=$OPTARG;;
321	(T) tasks_per_node=$OPTARG;;
322	(u) remote_user=$OPTARG;;
323	(v) verify=false;;
324	(X) numprocs=$OPTARG;;
325	(\?) printf "\n +++ Option $OPTARG unknown \n";
326	locat=option; exit;;
327	esac
328	done
329
330
331	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
332	shift OPTIND-1; file_to_send=$1
333
334
335	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
336	if [ "$1" = "?" ]
337	then
338	(printf "\n *** subjob can be called as follows:\n"
339	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
340	printf "\n Description of available options:\n"
341	printf "\n Option Description Default-Value"
342	printf "\n -c job-input- and output-catalog ~/job_queue"
343	printf "\n -d no job-protocol will be created ---"
344	printf "\n -D only the job-file will be created ---"
345	printf "\n -h execution host, available hosts: $remote_host"
346	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
347	printf "\n lckiaps, lctit, nech, necriam, unics"
348	printf "\n -m memory demand per process in MByte ---"
349	printf "\n -n jobname <jobdatei>"
350	printf "\n -O threads per task (for OpenMP usage) 1"
351	printf "\n -q job-queue to be used default"
352	printf "\n -t allowed cpu-time in seconds ---"
353	printf "\n -T tasks per node (on parallel hosts) ---"
354	printf "\n -u username on execution host from .netrc"
355	printf "\n -v no prompt for confirmation ---"
356	printf "\n -X # of processors (on parallel hosts) 1"
357	printf "\n "
358	printf "\n The only possible positional parameter is <jobfile>:"
359	printf "\n The complete NQS-job must be provided here."
360	printf "\n <jobfile>=? creates this outline\n\n") \| more
361	exit
362	fi
363
364
365
366	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
367	if [[ "$file_to_send" = "" ]]
368	then
369	printf "\n +++ job-file missing"
370	locat=parameter; exit
371	else
372	if [[ -f $file_to_send ]]
373	then
374	true
375	else
376	printf "\n +++ job-file: "
377	printf "\n $file_to_send"
378	printf "\n does not exist"
379	locat=parameter; exit
380	fi
381	fi
382
383
384
385	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
386	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
387	if [[ $job_name = none ]]
388	then
389	job_name=$file_to_send
390	fi
391	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
392	then
393	printf "\n +++ job-file name: "
394	printf "\n $job_name"
395	printf "\n must not contain \"/\"-characters"
396	locat=parameter; exit
397	fi
398
399
400
401
402	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
403	# ODER WENN HOST NICHT ANGEGEBEN WURDE
404	if [[ $remote_host = none ]]
405	then
406	printf "\n +++ host missing"
407	locat=option; exit
408	else
409	case $remote_host in
410	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
411	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
412	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
413	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
414	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
415	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
416	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
417	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
418	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
419	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
420	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
421	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
422	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
423	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
424	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
425	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
426	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
427	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
428	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
429	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
430	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
431	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
432	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
433	locat=parameter; exit;;
434	esac
435	fi
436
437
438	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
439	if [[ $no_default_queue != none ]]
440	then
441	error=false
442	ndq=$no_default_queue
443	case $remote_host in
444	(ibm) case $ndq in
445	(p690_express\|p690_standard\|p690_long) error=false;;
446	(*) error=true;;
447	esac;;
448	(ibmh) case $ndq in
449	(no_class) error=false;;
450	(*) error=true;;
451	esac;;
452	(ibmkisti) case $ndq in
453	(class.32plus\|class.1-2\|class.2-32) error=false;;
454	(*) error=true;;
455	esac;;
456	(ibmku) case $ndq in
457	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
458	(*) error=true;;
459	esac;;
460	(ibms) case $ndq in
461	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
462	(*) error=true;;
463	esac;;
464	(ibmy) case $ndq in
465	(parallel) error=false;;
466	(*) error=true;;
467	esac;;
468	(lckiaps) case $ndq in
469	(express\|normal) error=false;;
470	(*) error=true;;
471	esac;;
472	(lckyoto) case $ndq in
473	(eh\|ph) error=false;;
474	(*) error=true;;
475	esac;;
476	(lcsgib\|lcsgih) case $ndq in
477	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
478	(*) error=true;;
479	esac;;
480	(lctit) case $ndq in
481	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
482	(*) error=true;;
483	esac;;
484	(t3eb) case $ndq in
485	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
486	(*) error=true;;
487	esac;;
488	(necriam) case $ndq in
489	(SP\|SS\|P6) error=false;;
490	(*) error=true;;
491	esac;;
492	(t3eh) case $ndq in
493	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
494	(*) error=true;;
495	esac;;
496	(t3ej2\|t3ej5) case $ndq in
497	(low\|normal\|high) error=false;;
498	(*) error=true;;
499	esac;;
500	(t3es) case $ndq in
501	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
502	(*) error=true;;
503	esac;;
504	(unics) case $ndq in
505	(unics\|ht) error=false;;
506	(*) error=true;;
507	esac;;
508	esac
509	if [[ $error = true ]]
510	then
511	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
512	locat=parameter; exit
513	else
514	queue=$no_default_queue
515	fi
516	fi
517
518
519
520	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
521	# AUFTEILEN
522	done=false
523	while [[ $done = false ]]
524	do
525	if (( $cputime <= 0 ))
526	then
527	printf "\n +++ wrong cpu-time or cpu-time missing"
528	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
529	printf "\n >>> "
530	read cputime 1>/dev/null 2>&1
531	else
532	done=true
533	fi
534	done
535	if [[ $remote_host = nech ]]
536	then
537	if (( tasks_per_node != 0 ))
538	then
539	(( cputime = cputime * tasks_per_node ))
540	elif [[ $numprocs != 0 ]]
541	then
542	(( cputime = cputime * numprocs ))
543	fi
544	fi
545	(( stunden = cputime / 3600 ))
546	(( resttime = cputime - stunden * 3600 ))
547	(( minuten = resttime / 60 ))
548	(( sekunden = resttime - minuten * 60 ))
549	timestring=${stunden}:${minuten}:${sekunden}
550
551
552
553	# PRUEFEN DER KERNSPEICHERANFORDERUNG
554	done=false
555	while [[ $done = false ]]
556	do
557	if (( memory <= 0 ))
558	then
559	printf "\n +++ wrong memory demand or memory demand missing"
560	printf "\n >>> Please type memory in MByte per process as INTEGER:"
561	printf "\n >>> "
562	read memory 1>/dev/null 2>&1
563	else
564	done=true
565	fi
566	done
567
568	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
569	then
570	if (( tasks_per_node != 0 ))
571	then
572	(( Memory = memory * tasks_per_node / 1000 ))
573	elif [[ $numprocs != 0 ]]
574	then
575	(( Memory = memory * numprocs / 1000 ))
576	else
577	(( Memory = memory / 1000 ))
578	fi
579	elif [[ $remote_host = lctit ]]
580	then
581	(( Memory = memory * tasks_per_node / 1000 ))
582	fi
583
584
585	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
586	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
587	then
588	(( memory = memory * threads_per_task ))
589	fi
590
591
592	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
593	if (( tasks_per_node != 0 ))
594	then
595	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
596	fi
597
598	# Calculate number of processes per node
599	(( processes_per_node = tasks_per_node * threads_per_task ))
600
601	# Calculate number of MPI tasks
602	(( mpi_tasks = numprocs / threads_per_task ))
603
604
605	# HEADER-AUSGABE
606	if [[ $verify = true ]]
607	then
608	printf "\n\n"
609	printf "#--------------------------------------------------------------# \n"
610	spalte1=SUBJOB;spalte2=$(date)
611	printf "\| $spalte1$spalte2 \| \n"
612	printf "\| \| \n"
613	printf "\| values of parameters/options: \| \n"
614	spalte1=local_host$punkte; spalte2=$punkte$local_host
615	printf "\| $spalte1$spalte2 \| \n"
616	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
617	printf "\| $spalte1$spalte2 \| \n"
618	spalte1=queue$punkte; spalte2=$punkte$queue
619	printf "\| $spalte1$spalte2 \| \n"
620	spalte1=memory$punkte; spalte2="$punkte$memory mb"
621	printf "\| $spalte1$spalte2 \| \n"
622	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
623	printf "\| $spalte1$spalte2 \| \n"
624	spalte1=job_name$punkte; spalte2="$punkte$job_name"
625	printf "\| $spalte1$spalte2 \| \n"
626	printf "#--------------------------------------------------------------# \n\n"
627
628
629	# KONTROLLABFRAGE, OB ALLES O.K.
630	antwort="dummy"
631	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
632	do
633	read antwort?" >>> continue (y/n) ? "
634	done
635	if [[ $antwort = n \|\| $antwort = N ]]
636	then
637	locat=verify; exit
638	fi
639	printf "\n"
640	fi
641
642
643
644	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
645	kennung=$RANDOM
646	job_on_remhost=${job_name}_${kennung}_$local_host
647	job_to_send=job_to_send_$kennung
648	if [[ $delete_dayfile = false ]]
649	then
650	remote_dayfile=${local_host}_${job_name}_result_$kennung
651	local_dayfile=${remote_host}_${job_name}
652	else
653	remote_dayfile=/dev/null
654	fi
655
656
657
658	# Generate the batch job scripts (qsub/msub/LoadLeveler)
659	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
660	then
661
662	# General LoadLeveler settings
663	execute_in_shell="#!/bin/ksh"
664	use_shell="# @ shell = /bin/ksh"
665	consumable_memory="ConsumableMemory($memory mb)"
666	class="# @ class = $queue"
667	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
668	network_to_use="# @ network.mpi = sn_all,shared,us"
669	data_limit="# @ data_limit = 1.76gb"
670	image_size="# @ image_size = 50"
671	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
672
673	if [[ $email_notification = none ]]
674	then
675	notify_user=""
676	else
677	notify_user="# @ notify_user = $email_notification"
678	if [[ $delete_dayfile = true ]]
679	then
680	notification='# @ notification = never'
681	fi
682	fi
683
684	if [[ $remote_host = ibmh ]]
685	then
686	data_limit=""
687	network_to_use=""
688	class=""
689	environment=""
690	rset="# @ rset = RSET_MCM_AFFINITY"
691	task_affinity="# @ task_affinity = core(1)"
692	elif [[ $remote_host = ibmkisti ]]
693	then
694	network_to_use="# @ network.MPI = sn_all,shared,US"
695	wall_clock_limit="# @ wall_clock_limit = $timestring"
696	if [[ $threads_per_task = 1 ]]
697	then
698	rset="# @ rset = RSET_MCM_AFFINITY"
699	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
700	fi
701	environment=""
702	use_shell=""
703	data_limit=""
704	image_size=""
705	elif [[ $remote_host = ibmku ]]
706	then
707	execute_in_shell="#!/usr/bin/ksh"
708	use_shell="# @ shell = /usr/bin/ksh"
709	consumable_memory=""
710	environment=""
711	network_to_use="# @ network.mpi = sn_all,shared,us"
712	data_limit=""
713	image_size=""
714	elif [[ $remote_host = ibms ]]
715	then
716	network_to_use="# @ network.mpi = csss,shared,us"
717	elif [[ $remote_host = ibmy ]]
718	then
719	consumable_memory=""
720	network_to_use=""
721	fi
722
723	cat > $job_to_send << %%END%%
724	$execute_in_shell
725	$use_shell
726
727	# @ job_type = parallel
728	# @ job_name = $job_name
729	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
730	# @ output = $remote_dayfile
731	# @ error = $remote_dayfile
732	$wall_clock_limit
733	$image_size
734	$class
735	$environment
736	$network_to_use
737	$data_limit
738	$rset
739	$mcm_affinity_options
740	$task_affinity
741	$notification
742	$notify_user
743
744	%%END%%
745
746	if (( nodes > 0 ))
747	then
748
749	if [[ $remote_host != ibmkisti ]]
750	then
751
752	cat >> $job_to_send << %%END%%
753	# @ node = $nodes
754	# @ tasks_per_node = $processes_per_node
755	# @ node_usage = $node_usage
756	# @ queue
757
758	%%END%%
759
760	else
761
762	cat >> $job_to_send << %%END%%
763	# @ total_tasks = $mpi_tasks
764	# @ blocking = unlimited
765	# @ queue
766
767	%%END%%
768
769	fi
770
771	else
772
773	if [[ $remote_host != ibmy ]]
774	then
775
776	cat >> $job_to_send << %%END%%
777	# @ blocking = unlimited
778	# @ total_tasks = $numprocs
779	# @ node_usage = $node_usage
780	# @ queue
781
782	%%END%%
783
784	else
785
786	cat >> $job_to_send << %%END%%
787	# @ node = 1
788	# @ total_tasks = $numprocs
789	# @ queue
790
791	%%END%%
792
793	fi
794
795	fi
796
797	# workaround because of silly job filter on ibmkisti
798	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
799	then
800	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
801	fi
802
803	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
804	then
805
806	cat > $job_to_send << %%END%%
807	#!/bin/ksh
808
809	# @ job_type = serial
810	# @ node_usage = $node_usage
811	# @ job_name = palm
812	# @ wall_clock_limit = ${timestring},$timestring
813	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
814	# @ output = $remote_dayfile
815	# @ error = $remote_dayfile
816	$class
817	$notification
818
819	# @ queue
820
821	%%END%%
822
823	elif [[ $remote_host = lcfimm ]]
824	then
825
826	if [[ $numprocs != 0 ]]
827	then
828	cat > $job_to_send << %%END%%
829	#!/bin/ksh
830	#PBS -N $job_name
831	#PBS -A $project_account
832	#PBS -l walltime=$timestring
833	#PBS -l nodes=${nodes}:ppn=$processes_per_node
834	#PBS -l pmem=${memory}mb
835	#PBS -m abe
836	#PBS -o $remote_dayfile
837	#PBS -j oe
838	mpd &
839
840	%%END%%
841
842	else
843	cat > $job_to_send << %%END%%
844	#!/bin/ksh
845	#PBS -N $job_name
846	#PBS -A $project_account
847	#PBS -l walltime=$timestring
848	#PBS -l ncpus=1
849	#PBS -l pmem=${memory}mb
850	#PBS -m abe
851	#PBS -o $remote_dayfile
852	#PBS -j oe
853
854	%%END%%
855
856	fi
857
858	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
859	then
860
861	if [[ $numprocs != 0 ]]
862	then
863	cat > $job_to_send << %%END%%
864	#!/bin/ksh
865	#PBS -N $job_name
866	#PBS -l walltime=$timestring
867	#PBS -l ncpus=$numprocs
868	#PBS -l pmem=${memory}mb
869	#PBS -o $remote_dayfile
870	#PBS -l nodes=$nodes:ppn=${processes_per_node}
871	#PBS -j oe
872
873	mpd &
874
875	%%END%%
876
877	else
878	cat > $job_to_send << %%END%%
879	#!/bin/ksh
880	#PBS -N $job_name
881	#PBS -l walltime=$timestring
882	#PBS -l ncpus=1
883	#PBS -l pmem=${memory}mb
884	#PBS -o $remote_dayfile
885	#PBS -j oe
886
887	%%END%%
888
889	fi
890
891	elif [[ $remote_host = lckiaps ]]
892	then
893
894	if [[ $numprocs != 0 ]]
895	then
896	cat > $job_to_send << %%END%%
897	#!/bin/ksh
898	#PBS -N $job_name
899	#PBS -l walltime=$timestring
900	#PBS -l select=1:ncpus=$numprocs
901	#PBS -l pmem=${memory}mb
902	#PBS -q $queue
903	#PBS -o $remote_dayfile
904	#PBS -j oe
905	#PBS -V
906
907	%%END%%
908
909	else
910	cat > $job_to_send << %%END%%
911	#!/bin/ksh
912	#PBS -N $job_name
913	#PBS -l walltime=$timestring
914	#PBS -l ncpus=1
915	#PBS -l pmem=${memory}mb
916	#PBS -o $remote_dayfile
917	#PBS -j oe
918
919	%%END%%
920
921	fi
922
923	elif [[ $remote_host = lcyon ]]
924	then
925
926	if [[ $numprocs != 0 ]]
927	then
928	cat > $job_to_send << %%END%%
929	#!/bin/ksh
930	#PBS -N $job_name
931	#PBS -l walltime=$timestring
932	#PBS -l ncpus=$numprocs
933	#PBS -l pmem=${memory}mb
934	#PBS -o $remote_dayfile
935	#PBS -j oe
936
937	%%END%%
938
939	else
940	cat > $job_to_send << %%END%%
941	#!/bin/ksh
942	#PBS -N $job_name
943	#PBS -l walltime=$timestring
944	#PBS -l ncpus=1
945	#PBS -l pmem=${memory}mb
946	#PBS -o $remote_dayfile
947	#PBS -j oe
948
949	%%END%%
950
951	fi
952
953	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
954	then
955
956	if [[ "$sgi_feature" != "" ]]
957	then
958	feature_directive="#PBS -l feature=$sgi_feature"
959	else
960	feature_directive=""
961	fi
962
963	if [[ $queue = dataq \|\| $queue = permq ]]
964	then
965	feature_directive="#PBS -l feature=data"
966	fi
967
968	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
969	then
970	queue_directive="#PBS -q $queue"
971	else
972	queue_directive=""
973	fi
974
975	if [[ $email_notification = none ]]
976	then
977	email_directive=""
978	else
979	email_directive="#PBS -M $email_notification"
980	fi
981
982	if [[ $numprocs != 0 ]]
983	then
984	cat > $job_to_send << %%END%%
985	#!/bin/bash
986	#PBS -N $job_name
987	#PBS -l walltime=$timestring
988	#PBS -l nodes=$nodes:ppn=${processes_per_node}
989	#PBS -l naccesspolicy=$node_usage
990	#PBS -o $remote_dayfile
991	#PBS -j oe
992	$feature_directive
993	$queue_directive
994	$email_directive
995
996	eval \`/sw/swdist/bin/modulesinit\`
997	#. /usr/share/modules/init/bash
998	$init_cmds
999	$module_calls
1000
1001	echo ld_library_path=\$LD_LIBRARY_PATH
1002
1003	%%END%%
1004
1005	else
1006	cat > $job_to_send << %%END%%
1007	#PBS -S /bin/bash
1008	#PBS -N $job_name
1009	#PBS -l walltime=$timestring
1010	#PBS -l ncpus=1
1011	#PBS -o $remote_dayfile
1012	#PBS -j oe
1013	$queue_directive
1014	$email_directive
1015
1016	eval \`/sw/swdist/bin/modulesinit\`
1017	#. /usr/share/modules/init/bash
1018	$init_cmds
1019	$module_calls
1020
1021	%%END%%
1022
1023	fi
1024
1025	elif [[ $remote_host = lcxe6 ]]
1026	then
1027
1028	if [[ $numprocs != 0 ]]
1029	then
1030	cat > $job_to_send << %%END%%
1031	#!/bin/ksh
1032	#PBS -S /bin/ksh
1033	#PBS -N $job_name
1034	#PBS -A $project_account
1035	#PBS -j oe
1036	#PBS -l walltime=$timestring
1037	#PBS -l mppwidth=${numprocs}
1038	#PBS -l mppnppn=${processes_per_node}
1039	#PBS -m abe
1040	#PBS -o $remote_dayfile
1041	$email_directive
1042
1043	$init_cmds
1044	$module_calls
1045
1046	%%END%%
1047
1048	else
1049	cat > $job_to_send << %%END%%
1050	#!/bin/ksh
1051	#PBS -S /bin/ksh
1052	#PBS -N $job_name
1053	#PBS -A $project_account
1054	#PBS -j oe
1055	#PBS -l walltime=$timestring
1056	#PBS -l ncpus=1
1057	#PBS -l pmem=${memory}mb
1058	#PBS -m abe
1059	$email_directive
1060	#PBS -o $remote_dayfile
1061
1062	$init_cmds
1063	$module_calls
1064
1065	%%END%%
1066
1067	fi
1068
1069	elif [[ $remote_host = lckyoto ]]
1070	then
1071
1072	cat > $job_to_send << %%END%%
1073	#!/bin/ksh
1074	# @\$-o $remote_dayfile
1075	# @\$-eo -oi
1076	# @\$-lP 16
1077	# @\$-lp 1
1078	# @\$-lm 28gb -llm unlimited -ls unlimited
1079	# @\$-q $queue
1080	# @\$-Pvn abs_pack
1081	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1082	#. /thin/local/etc/setprofile/intel-11.0.sh
1083	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1084	. ~/.myprofile
1085	#. /home2/t/t51254/palm/current_version/myprofile
1086	#. /thin/apps/pgi/mpi.sh
1087	#
1088	env
1089	#
1090	set -x
1091
1092	%%END%%
1093
1094	elif [[ $remote_host = lcxt5m ]]
1095	then
1096
1097	if [[ $numprocs != 0 ]]
1098	then
1099	cat > $job_to_send << %%END%%
1100	#!/bin/ksh
1101	#PBS -S /bin/ksh
1102	#PBS -N $job_name
1103	#PBS -j oe
1104	#PBS -l walltime=$timestring
1105	#PBS -l mppwidth=${numprocs}
1106	#PBS -l mppnppn=${processes_per_node}
1107	#PBS -m abe
1108	#PBS -o $remote_dayfile
1109
1110	$init_cmds
1111	$module_calls
1112
1113	%%END%%
1114
1115	else
1116	cat > $job_to_send << %%END%%
1117	#!/bin/ksh
1118	#PBS -S /bin/ksh
1119	#PBS -N $job_name
1120	#PBS -j oe
1121	#PBS -l walltime=$timestring
1122	#PBS -l ncpus=1
1123	#PBS -l pmem=${memory}mb
1124	#PBS -m abe
1125	#PBS -o $remote_dayfile
1126
1127	$init_cmds
1128	$module_calls
1129
1130	%%END%%
1131
1132	fi
1133
1134	elif [[ $remote_host = nech ]]
1135	then
1136
1137	if (( nodes > 1 ))
1138	then
1139	cat > $job_to_send << %%END%%
1140	#!/bin/ksh
1141	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1142	#PBS -l ${qsubmem}=${Memory}gb
1143	#PBS -b $nodes
1144	#PBS -o $remote_dayfile
1145	#PBS -N palm
1146	#PBS -j o
1147	#PBS -T mpisx
1148
1149	%%END%%
1150
1151	elif [[ $numprocs != 0 ]]
1152	then
1153	cat > $job_to_send << %%END%%
1154	#!/bin/ksh
1155	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1156	#PBS -l ${qsubmem}=${Memory}gb
1157	#PBS -o $remote_dayfile
1158	#PBS -N palm
1159	#PBS -j o
1160
1161	%%END%%
1162
1163	else
1164	cat > $job_to_send << %%END%%
1165	#!/bin/ksh
1166	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1167	#PBS -o $remote_dayfile
1168	#PBS -j o
1169
1170	%%END%%
1171
1172	fi
1173
1174	elif [[ $remote_host = necriam ]]
1175	then
1176
1177	if (( nodes > 1 ))
1178	then
1179	cat > $job_to_send << %%END%%
1180	#!/bin/ksh
1181	#PBS -b $nodes
1182	#PBS -o $remote_dayfile
1183	#PBS -N $job_name
1184	#PBS -j o
1185	#PBS -v MPIPROGINV=YES
1186
1187	%%END%%
1188
1189	elif [[ $numprocs != 0 ]]
1190	then
1191	cat > $job_to_send << %%END%%
1192	#!/bin/ksh
1193	#PBS -q ${queue}
1194	#PBS -o $remote_dayfile
1195	#PBS -N $job_name
1196	#PBS -j o
1197	#PBS -v MPIPROGINV=YES
1198
1199	%%END%%
1200
1201	else
1202	cat > $job_to_send << %%END%%
1203	#!/bin/ksh
1204	#PBS -o $remote_dayfile
1205	#PBS -j o
1206
1207	%%END%%
1208
1209	fi
1210
1211	elif [[ $remote_host = lctit ]]
1212	then
1213	cat > $job_to_send << %%END%%
1214	#!/bin/ksh
1215	$init_cmds
1216	$module_calls
1217
1218	%%END%%
1219
1220	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1221	if [[ $tasks_per_node != $processes_per_node ]]
1222	then
1223	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1224	else
1225	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1226	fi
1227
1228	else
1229
1230	cat > $job_to_send << %%END%%
1231	# @\$-q ${queue}
1232	# @\$-l${qsubtime} $timestring
1233	# @\$-l${qsubmem} ${memory}mb
1234	# @\$-o $remote_dayfile
1235	# @\$-eo
1236
1237	%%END%%
1238
1239	fi
1240
1241
1242	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1243	# BEI EXIT VERANLASSEN
1244	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1245	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1246	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1247	then
1248	echo "set +vx" >> $job_to_send
1249	echo "trap '" >> $job_to_send
1250	echo "set +vx" >> $job_to_send
1251	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps ]]
1252	then
1253	if [[ $remote_host = ibmh ]]
1254	then
1255	return_queue=c1
1256	elif [[ $remote_host = ibmkisti ]]
1257	then
1258	return_queue=class.1-2
1259	elif [[ $remote_host = ibmku ]]
1260	then
1261	return_queue=sdbg2
1262	elif [[ $remote_host = ibms ]]
1263	then
1264	return_queue=p_normal
1265	elif [[ $remote_host = ibmy ]]
1266	then
1267	return_queue=serial
1268	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1269	then
1270	return_queue=serialq
1271	elif [[ $remote_host = necriam ]]
1272	then
1273	return_queue=SP
1274	elif [[ $remote_host = lckiaps ]]
1275	then
1276	return_queue=express
1277	else
1278	return_queue=unknown
1279	fi
1280
1281	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1282	then
1283
1284	if [[ $remote_host = ibmku ]]
1285	then
1286	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1287	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1288	else
1289	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1290	fi
1291	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1292	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1293	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1294	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1295	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1296	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1297	if [[ $host != "ibmh" ]]
1298	then
1299	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1300	fi
1301	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1302	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1303
1304	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1305	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1306
1307	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1308	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1309	if [[ $remote_host = ibmku ]]
1310	then
1311	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1312	fi
1313	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1314
1315	elif [[ $remote_host = nech ]]
1316	then
1317	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1318	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1319	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1320	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1321	echo "#PBS -j o" >> $job_to_send
1322	echo " " >> $job_to_send
1323	echo "set -x" >> $job_to_send
1324	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1325	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1326	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1327	echo "%%END%%" >> $job_to_send
1328
1329	elif [[ $remote_host = necriam ]]
1330	then
1331	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1332	echo "#PBS -q $return_queue" >> $job_to_send
1333	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1334	echo "#PBS -j o" >> $job_to_send
1335	echo " " >> $job_to_send
1336	echo "set -x" >> $job_to_send
1337	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1338	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1339	echo "%%END%%" >> $job_to_send
1340
1341	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1342	then
1343	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1344	echo "#!/bin/bash" >> $job_to_send
1345	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1346	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1347	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1348	echo "#PBS -l feature=data" >> $job_to_send
1349	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1350	echo "#PBS -j oe" >> $job_to_send
1351	echo " " >> $job_to_send
1352	echo ". /usr/share/modules/init/bash" >> $job_to_send
1353	echo "set -x" >> $job_to_send
1354	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1355	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1356	echo "%%END%%" >> $job_to_send
1357
1358	else
1359
1360	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1361	echo "# @\\\$-q $return_queue" >> $job_to_send
1362	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1363	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1364	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1365	then
1366	echo "# @\$-l mpp_p=0" >> $job_to_send
1367	fi
1368	echo '# @\$-lF 10mb' >> $job_to_send
1369	# echo '# @\$-o /dev/null' >> $job_to_send
1370	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1371	echo '# @\\\$-eo' >> $job_to_send
1372	echo " " >> $job_to_send
1373	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1374	then
1375	echo "set +vx" >> $job_to_send
1376	echo ". .profile" >> $job_to_send
1377	fi
1378	echo "set -x" >> $job_to_send
1379	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1380	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1381	echo "%%END%%" >> $job_to_send
1382	fi
1383
1384	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1385	then
1386	echo "llsubmit scpjob.$kennung" >> $job_to_send
1387	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1388	then
1389	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1390	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1391	echo "msub scpjob.$kennung" >> $job_to_send
1392	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1393	then
1394	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1395	elif [[ $remote_host = t3es ]]
1396	then
1397	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1398	elif [[ $remote_host = lckiaps ]]
1399	then
1400	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1401	echo "ssh ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1402	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1403	else
1404	echo "$submcom scpjob.$kennung" >> $job_to_send
1405	fi
1406	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1407	then
1408	echo "rm scpjob.$kennung" >> $job_to_send
1409	fi
1410	if [[ $remote_host = nech ]]
1411	then
1412	echo "cd -" >> $job_to_send
1413	fi
1414	else
1415	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1416	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1417	fi
1418	echo "set -x" >> $job_to_send
1419	echo " ' exit" >> $job_to_send
1420	echo "set -x" >> $job_to_send
1421	fi
1422
1423
1424
1425	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1426	cat $file_to_send >> $job_to_send
1427
1428	if [[ $remote_host = ibm ]]
1429	then
1430	echo " " >> $job_to_send
1431	echo "exit" >> $job_to_send
1432	fi
1433
1434	# remove job file
1435	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1436	then
1437	echo " " >> $job_to_send
1438	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1439	fi
1440
1441
1442
1443	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1444	if [[ -z $remote_user ]]
1445	then
1446	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1447	then
1448	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1449	fi
1450	fi
1451
1452
1453
1454	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1455	if [[ $no_submit = false ]]
1456	then
1457	if [[ $remote_host != $local_host ]]
1458	then
1459	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1460	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1461	then
1462	job_catalog_save=$job_catalog
1463	job_catalog=job_queue
1464	elif [[ $remote_host = nech ]]
1465	then
1466	job_catalog_save=$job_catalog
1467	job_catalog=/hpf/b/${remote_user}/job_queue
1468	fi
1469	if [[ $local_host = decalpha ]]
1470	then
1471	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1472	# PASSWORT AB
1473	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1474	elif [[ $remote_host = nech ]]
1475	then
1476	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1477	# TRANSFERIERT WERDEN
1478	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1479	else
1480	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1481	fi
1482	if [[ $? = 1 ]]
1483	then
1484	locat=scp; exit
1485	fi
1486	if [[ $remote_host = ibms ]]
1487	then
1488	job_catalog=$job_catalog_save
1489	fi
1490	[[ $verify = true ]] && printf "\n >>> finished\n"
1491	else
1492	eval job_catalog=$job_catalog
1493	cp $job_to_send ${job_catalog}/$job_on_remhost
1494	fi
1495
1496
1497
1498	# NQS- BZW. LOADLEVELER-JOB STARTEN
1499	if [[ $remote_host != $local_host ]]
1500	then
1501	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1502
1503	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1504	then
1505	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1506	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1507	elif [[ $remote_host = ibmku ]]
1508	then
1509	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1510	else
1511	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1512	fi
1513
1514	[[ $verify = true ]] && printf " >>> o.k.\n"
1515	else
1516	cd $job_catalog
1517	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1518	then
1519	eval $submcom $job_on_remhost
1520	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb ]]
1521	then
1522	chmod u+x $job_on_remhost
1523	echo "$submcom $job_on_remhost"
1524	eval $submcom $job_on_remhost
1525	elif [[ $local_host = nech ]]
1526	then
1527	if [[ $queue = default ]]
1528	then
1529	eval $submcom $job_on_remhost
1530	else
1531	eval $submcom -q $queue $job_on_remhost
1532	fi
1533	else
1534	qsub $job_on_remhost
1535	fi
1536
1537	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1538	# only at the end of the job.
1539	if [[ $local_host != lctit && $local_host != ibmku ]]
1540	then
1541	rm $job_on_remhost
1542	fi
1543	cd - > /dev/null
1544	fi
1545	fi
1546
1547
1548
1549	# ABSCHLUSSARBEITEN
1550
1551	if [[ $no_submit = false ]]
1552	then
1553	rm $job_to_send
1554	fi
1555	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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