1 | #!/bin/bash |
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2 | |
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3 | # subjob - script for automatic generation and submission of batch-job files |
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4 | # for various batch queuing systems |
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5 | |
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6 | #--------------------------------------------------------------------------------# |
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7 | # This file is part of PALM. |
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8 | # |
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9 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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10 | # of the GNU General Public License as published by the Free Software Foundation, |
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11 | # either version 3 of the License, or (at your option) any later version. |
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12 | # |
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13 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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14 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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15 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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16 | # |
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17 | # You should have received a copy of the GNU General Public License along with |
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18 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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19 | # |
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20 | # Copyright 1997-2014 Leibniz Universitaet Hannover |
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21 | #--------------------------------------------------------------------------------# |
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22 | # |
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23 | # Current revisions: |
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24 | # ------------------ |
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25 | # |
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26 | # |
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27 | # Former revisions: |
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28 | # ----------------- |
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29 | # $Id: subjob 2365 2017-08-21 14:59:59Z hellstea $ |
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30 | # Added lckea & lckeam. KIT/IMK-IFU Garmisch cluster. LRZ (SadiqHuq) |
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31 | # |
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32 | # 2295 2017-06-27 14:25:52Z raasch |
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33 | # adjustments for using lcgeohu (cirrus @ HUB) |
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34 | # |
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35 | # 2266 2017-06-09 09:27:21Z raasch |
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36 | # nech related parts removed |
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37 | # |
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38 | # 2257 2017-06-07 14:07:05Z witha |
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39 | # adjustments for lceddy, removed lcflow-specific code |
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40 | # |
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41 | # 2188 2017-03-21 06:42:42Z raasch |
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42 | # |
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43 | # 2187 2017-03-21 06:41:25Z raasch |
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44 | # adjustment of compute node names for lckyuh |
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45 | # |
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46 | # 2184 2017-03-21 04:31:22Z raasch |
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47 | # bugfix: localhost renamed local_host |
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48 | # |
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49 | # 2148 2017-02-09 16:56:42Z scharf |
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50 | # added kuma and gharbi to the list of known hosts |
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51 | # |
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52 | # 2134 2017-02-02 07:33:46Z raasch |
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53 | # option -E added to msub commands on HLRN-III machines to allow output of more |
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54 | # job informations in the job protocol files |
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55 | # |
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56 | # 1944 2016-06-15 06:29:00Z raasch |
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57 | # adjustments for using HLRN ssh-keys |
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58 | # |
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59 | # 1940 2016-06-14 05:15:20Z raasch |
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60 | # adjustments for lckiaps |
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61 | # |
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62 | # 1866 2016-04-15 06:50:59Z raasch |
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63 | # adjusted for lcocean |
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64 | # |
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65 | # 1841 2016-04-07 19:14:06Z raasch |
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66 | # script now running under bash |
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67 | # |
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68 | # 1701 2015-11-02 07:43:04Z maronga |
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69 | # Bugfix: added missing init_cmds for lccrayh/lccrayb |
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70 | # |
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71 | # 1621 2015-07-17 11:39:33Z heinze |
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72 | # adjustments for Mistral at DKRZ Hamburg (lcbullhh) |
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73 | # |
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74 | # 1575 2015-03-27 09:56:27Z raasch |
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75 | # mpp2-queues added to lccrayh |
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76 | # |
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77 | # 1547 2015-01-29 15:09:12Z witha |
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78 | # adjustments for ForWind computing cluster (lcflow) |
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79 | # |
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80 | # 1545 2015-01-29 06:52:23Z heinze |
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81 | # local host name for blizzard further specified |
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82 | # |
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83 | # 1480 2014-10-17 14:41:49Z raasch |
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84 | # adjustments for 2nd stage of HLRNIII |
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85 | # |
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86 | # 1468 2014-09-24 14:06:57Z maronga |
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87 | # Typo removed (addres->address) |
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88 | # Adjustments for lcxe6 |
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89 | # |
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90 | # 1452 2014-08-22 09:41:06Z heinze |
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91 | # local hosts for blizzard added |
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92 | # |
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93 | # 1450 2014-08-21 07:31:51Z heinze |
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94 | # HLRN-III (lccrayb): testq queue adjusted to mpp1testq |
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95 | # |
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96 | # 1442 2014-07-28 07:09:10Z raasch |
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97 | # HLRN-III (lccrayb/lccrayh) queues adjusted |
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98 | # |
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99 | # 1378 2014-04-28 06:04:58Z raasch |
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100 | # -et option added for lctit |
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101 | # |
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102 | # 1350 2014-04-04 13:01:30Z maronga |
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103 | # location of qsub updated for lcxe6 |
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104 | # |
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105 | # 1289 2014-03-04 07:12:34Z raasch |
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106 | # German comments translated to English |
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107 | # fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed |
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108 | # |
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109 | # 1279 2014-01-28 12:10:14Z raasch |
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110 | # node calculation modified due to changes in mrun (tasks_per_node must not be |
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111 | # an integral divisor of numprocs any more) |
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112 | # |
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113 | # 1274 2014-01-09 13:14:54Z heinze |
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114 | # adjustments for lccrayh |
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115 | # |
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116 | # 1266 2013-12-11 12:07:34Z heinze |
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117 | # further adjustments for lccrayb (use msub instead of qsub) |
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118 | # |
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119 | # 1264 2013-12-09 12:46:09Z fricke |
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120 | # Bugfix: Using number of nodes instead of number of processors (lccrayb) |
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121 | # |
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122 | # 1262 2013-12-09 10:57:20Z fricke |
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123 | # further adjustments for lccrayb |
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124 | # |
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125 | # 1260 2013-12-04 12:48:04Z raasch |
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126 | # jaboticaba admitted |
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127 | # |
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128 | # 1255 2013-11-07 14:43:35Z raasch |
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129 | # further adjustments for lccrayb |
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130 | # |
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131 | # 1224 2013-09-16 07:27:23Z raasch |
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132 | # first adjustments for lccrayb |
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133 | # |
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134 | # 1202 2013-07-10 16:22:07Z witha |
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135 | # adjustments for Forwind cluster (lcflow) |
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136 | # |
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137 | # 1199 2013-07-05 14:52:22Z raasch |
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138 | # adjustments for CSC Helsinki (lccrayf) |
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139 | # |
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140 | # use of cluster/express queue enabled (ibmh) |
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141 | # vinessa added (imuk) |
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142 | # |
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143 | # 1103 2013-02-20 02:15:53Z raasch |
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144 | # bash compatibility adjustments (usage of OPTIND, output formatting with printf |
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145 | # instead typeset -L/R), |
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146 | # further adjustments for lckyuh |
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147 | # |
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148 | # 2013-02-10 01:47:43Z raasch |
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149 | # adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka) |
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150 | # and for Forwind cluster (lcflow) |
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151 | # |
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152 | # 1094 2013-02-03 01:52:12Z raasch |
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153 | # new option -P for explicit setting of ssh/scp port, |
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154 | # decalpha parts (yonsei) removed |
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155 | # |
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156 | # 2013-02-02 07:06:13Z raasch |
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157 | # adjustments for Kyushu-University computing center (lckyut - tatara) |
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158 | # old changelog messages removed |
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159 | # |
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160 | # 1046 2012-11-09 14:38:45Z maronga |
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161 | # code put under GPL (PALM 3.9) |
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162 | # |
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163 | # 08/07/94 - Siggi - first version finished |
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164 | # 29/06/94 - Siggi - script development started |
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165 | #--------------------------------------------------------------------------------# |
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166 | # subjob - script for automatic generation and submission of batch-job files |
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167 | # for various batch queuing systems |
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168 | #--------------------------------------------------------------------------------# |
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169 | |
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170 | |
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171 | # VARIABLE-DECLARATIONS AND DEFAULT VALUES |
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172 | delete_dayfile=false |
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173 | email_notification=none |
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174 | group_number=none |
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175 | locat=normal |
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176 | no_default_queue=none |
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177 | no_submit=false |
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178 | job_catalog="~/job_queue" |
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179 | job_name=none |
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180 | local_user=$LOGNAME |
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181 | node_usage=shared |
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182 | numprocs=0 |
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183 | punkte="..........................................................." |
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184 | submcom=qsub |
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185 | queue=default |
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186 | remote_host=none |
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187 | remote_user="" |
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188 | verify=true |
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189 | |
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190 | typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden |
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191 | typeset -i numprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1 |
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192 | |
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193 | |
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194 | |
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195 | # ERROR HANDLING |
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196 | # IN CASE OF EXIT: |
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197 | trap 'if [[ $locat != normal ]] |
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198 | then |
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199 | case $locat in |
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200 | (option) printf "\n --> available optios can be displayed" |
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201 | printf " by typing:" |
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202 | printf "\n \"subjob ?\" \n";; |
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203 | (ftpcopy|parameter|scp|verify) printf "\n";; |
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204 | (*) printf "\n +++ unknown error" |
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205 | printf "\n please inform S. Raasch!\n" |
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206 | esac |
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207 | [[ -f $job_to_send ]] && rm $job_to_send |
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208 | printf "\n\n+++ SUBJOB killed \n\n" |
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209 | fi' exit |
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210 | |
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211 | |
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212 | # IN CASE OF TERMINAL-BREAK: |
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213 | trap '[[ -f $job_to_send ]] && rm $job_to_send |
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214 | printf "\n\n+++ SUBJOB killed \n\n" |
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215 | exit |
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216 | ' 2 |
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217 | |
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218 | |
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219 | # DETERMINE NAME OF LOCAL HOST |
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220 | local_host=$(hostname) |
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221 | |
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222 | # SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST |
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223 | # IS ADMITTED AT ALL) |
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224 | # NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE |
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225 | # COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES |
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226 | case $local_host in |
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227 | (ambiel-lx) local_address=134.106.74.48; local_host=lcfor;; |
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228 | (atmos) local_address=172.20.25.35; local_host=lcide;; |
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229 | (austru) local_address=130.75.105.128; local_host=lcmuk;; |
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230 | (autan) local_address=130.75.105.57; local_host=lcmuk;; |
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231 | (bora) local_address=130.75.105.103; local_host=lcmuk;; |
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232 | (a0*|b0*) local_address=133.5.4.33; local_host=lckyuh;; |
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233 | (blizzard1|p0*|p1*|p2*|p3*|p4*|p5*|p6*|p7*|p8*|p9*) local_address=136.172.40.15; local_host=ibmh;; |
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234 | (blizzard2|p0*|p1*|p2*|p3*|p4*|p5*|p6*|p7*|p8*|p9*) local_address=136.172.40.16; local_host=ibmh;; |
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235 | (blogin*|bxc*) local_address=130.73.233.1; local_host=lccrayb;; |
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236 | (hlogin*|hxc*) local_address=130.75.4.1; local_host=lccrayh;; |
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237 | (breva) local_address=130.75.105.98; local_host=lcmuk;; |
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238 | (buran) local_address=130.75.105.58; local_host=lcmuk;; |
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239 | (caurus) local_address=130.75.105.19; local_host=lcmuk;; |
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240 | (climate*) local_address=165.132.26.68; local_host=lcyon;; |
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241 | (clogin*) local_address=86.50.166.21; local_host=lccrayf;; |
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242 | (elephanta) local_address=130.75.105.6; local_host=lcmuk;; |
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243 | (hpcl*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;; |
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244 | (cfd*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;; |
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245 | (node*) local_address=165.132.26.61 local_host=lck;; |
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246 | # (node*) local_address=210.219.61.8 local_host=lckordi;; |
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247 | (gaia*) local_address=150.183.146.24; local_host=ibmkisti;; |
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248 | (gharbi) local_address=130.75.105.47; local_host=lcmuk;; |
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249 | (gallego) local_address=130.75.105.10; local_host=lcmuk;; |
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250 | (gregale) local_address=130.75.105.109; local_host=lcmuk;; |
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251 | (hababai) local_address=130.75.105.108; local_host=lcmuk;; |
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252 | (hayaka*) local_address=133.5.4.33; local_host=lckyuh;; |
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253 | (hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;; |
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254 | (hx*) local_address=133.3.51.11; local_host=lckyoto;; |
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255 | (inferno) local_address=130.75.105.5; local_host=lcmuk;; |
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256 | (irifi) local_address=130.75.105.104; local_host=lcmuk;; |
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257 | # (i*) local_address=129.187.11.197; local_host=ibmmuc;; |
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258 | (jaboticaba) local_address=150.163.25.181; local_host=lcbr;; |
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259 | (kea*) local_address=172.27.80.109; local_host=lckeal;; |
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260 | (sno) local_address=130.75.105.113; local_host=lcmuk;; |
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261 | (kuma) local_address=130.75.105.115; local_host=lcmuk;; |
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262 | (levanto) local_address=130.75.105.45; local_host=lcmuk;; |
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263 | (login*) local_address=118.128.66.201; local_host=lckiaps;; |
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264 | # (login*) local_address=129.187.11.197; local_host=ibmmuc;; |
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265 | (lm*) local_address=129.187.11.197; local_host=ibmmuc;; |
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266 | (lx*) local_address=129.187.20.240; local_host=lclrz;; |
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267 | (mpp2*) local_address=129.187.20.105; local_host=lclrz;; |
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268 | (maestro) local_address=130.75.105.2; local_host=lcmuk;; |
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269 | (meller) local_address=134.106.74.155; local_host=lcfor;; |
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270 | (meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;; |
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271 | (mlogin1*|m1*) local_address=136.172.50.13; local_host=lcbullhh;; |
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272 | (hexagon*) local_address=129.177.20.113; local_host=lcxe6;; |
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273 | (nobel*) local_address=150.183.5.101; local_host=ibms;; |
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274 | (ocean) local_address="ocean"; local_host=lcocean;; |
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275 | (orkan) local_address=130.75.105.3; local_host=lcmuk;; |
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276 | (ostria) local_address=130.75.105.106; local_host=lcmuk;; |
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277 | (paesano) local_address=130.75.105.46; local_host=lcmuk;; |
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278 | (pcj*) local_address=172.31.120.1; local_host=lckyut;; |
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279 | (pingui) local_address=134.106.74.118; local_host=lcfor;; |
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280 | (quanero) local_address=130.75.105.107; local_host=lcmuk;; |
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281 | (rte*) local_address=133.5.185.60; local_host=lcrte;; |
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282 | (schultzl-Latitude-E6540) local_address="schultzl-Latitude-E6540"; local_host=lcsch;; |
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283 | (shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;; |
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284 | (sisu-login*) local_address=86.50.166.21; local_host=lccrayf;; |
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285 | (solano) local_address=130.75.105.110; local_host=lcmuk;; |
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286 | (sugoka*) local_address=172.31.120.1; local_host=lckyut;; |
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287 | (tc*) local_address="ocean"; local_host=lcocean;; |
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288 | (t2a*) local_address=10.1.6.165; local_host=lctit;; |
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289 | (uc1n*) local_address=129.13.82.89; local_host=lcbwuni;; |
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290 | (urban*) local_address=147.46.30.151 local_host=lcsb;; |
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291 | (vinessa) local_address=130.75.105.112; local_host=lcmuk;; |
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292 | (vorias) local_address=172.20.25.43; local_host=lcmuk;; |
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293 | (*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;; |
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294 | (*.cluster) local_address=192.168.1.254; local_host=lcgeohu;; |
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295 | (*) printf "\n +++ \"$local_host\" unknown"; |
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296 | printf "\n please contact the PALM group at IMUK"; |
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297 | locat=parameter; exit;; |
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298 | esac |
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299 | |
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300 | |
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301 | |
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302 | # BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST |
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303 | remote_host=$local_host |
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304 | |
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305 | |
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306 | |
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307 | |
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308 | # READ THE SHELLSCRIPT-OPTIONS |
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309 | while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option |
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310 | do |
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311 | case $option in |
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312 | (c) job_catalog=$OPTARG;; |
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313 | (d) delete_dayfile=true;; |
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314 | (D) no_submit=true;; |
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315 | (e) email_notification=$OPTARG;; |
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316 | (g) group_number=$OPTARG;; |
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317 | (h) remote_host=$OPTARG;; |
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318 | (m) memory=$OPTARG;; |
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319 | (n) job_name=$OPTARG;; |
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320 | (N) node_usage=$OPTARG;; |
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321 | (O) threads_per_task=$OPTARG;; |
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322 | (P) scp_port=$OPTARG;; |
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323 | (q) no_default_queue=$OPTARG;; |
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324 | (t) cputime=$OPTARG;; |
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325 | (T) tasks_per_node=$OPTARG;; |
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326 | (u) remote_user=$OPTARG;; |
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327 | (v) verify=false;; |
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328 | (X) numprocs=$OPTARG;; |
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329 | (\?) printf "\n +++ Option $OPTARG unknown \n"; |
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330 | locat=option; exit;; |
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331 | esac |
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332 | done |
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333 | |
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334 | |
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335 | # GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT |
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336 | (( to_shift = $OPTIND - 1 )) |
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337 | shift $to_shift; file_to_send=$1 |
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338 | |
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339 | |
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340 | # OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS |
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341 | if [ "$1" = "?" ] |
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342 | then |
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343 | (printf "\n *** subjob can be called as follows:\n" |
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344 | printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n" |
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345 | printf "\n Description of available options:\n" |
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346 | printf "\n Option Description Default-Value" |
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347 | printf "\n -c job-input- and output-catalog ~/job_queue" |
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348 | printf "\n -d no job-protocol will be created ---" |
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349 | printf "\n -D only the job-file will be created ---" |
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350 | printf "\n -h execution host, available hosts: $remote_host" |
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351 | printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...," |
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352 | printf "\n lckiaps, lctit" |
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353 | printf "\n -m memory demand per process in MByte ---" |
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354 | printf "\n -n jobname <jobdatei>" |
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355 | printf "\n -O threads per task (for OpenMP usage) 1" |
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356 | printf "\n -P ssh/scp port default port" |
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357 | printf "\n -q job-queue to be used default" |
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358 | printf "\n -t allowed cpu-time in seconds ---" |
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359 | printf "\n -T tasks per node (on parallel hosts) ---" |
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360 | printf "\n -u username on execution host from .netrc" |
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361 | printf "\n -v no prompt for confirmation ---" |
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362 | printf "\n -X # of processors (on parallel hosts) 1" |
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363 | printf "\n " |
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364 | printf "\n The only possible positional parameter is <jobfile>:" |
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365 | printf "\n The complete NQS-job must be provided here." |
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366 | printf "\n <jobfile>=? creates this outline\n\n") | more |
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367 | exit |
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368 | fi |
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369 | |
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370 | |
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371 | |
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372 | # CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS |
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373 | if [[ "$file_to_send" = "" ]] |
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374 | then |
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375 | printf "\n +++ job-file missing" |
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376 | locat=parameter; exit |
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377 | else |
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378 | if [[ -f $file_to_send ]] |
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379 | then |
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380 | true |
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381 | else |
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382 | printf "\n +++ job-file: " |
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383 | printf "\n $file_to_send" |
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384 | printf "\n does not exist" |
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385 | locat=parameter; exit |
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386 | fi |
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387 | fi |
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388 | |
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389 | |
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390 | |
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391 | # IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE, |
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392 | # PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH |
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393 | if [[ $job_name = none ]] |
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394 | then |
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395 | job_name=$file_to_send |
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396 | fi |
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397 | if [[ $(echo $job_name | grep -c "/") != 0 ]] |
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398 | then |
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399 | printf "\n +++ job-file name: " |
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400 | printf "\n $job_name" |
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401 | printf "\n must not contain \"/\"-characters" |
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402 | locat=parameter; exit |
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403 | fi |
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404 | |
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405 | |
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406 | |
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407 | |
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408 | # SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST, |
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409 | # OR IF NO HOST HAS BEEN GIVEN |
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410 | if [[ $remote_host = none ]] |
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411 | then |
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412 | printf "\n +++ host missing" |
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413 | locat=option; exit |
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414 | else |
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415 | case $remote_host in |
---|
416 | (ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
417 | (ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
418 | (ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
419 | (ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;; |
---|
420 | (ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
---|
421 | (ibmmuc) remote_address=129.187.11.197; submcom=/usr/bin/llsubmit;; |
---|
422 | (lcbwuni) queue=develop; remote_address=129.13.82.89; submcom=/opt/moab/bin/msub;; |
---|
423 | (lcbullhh) queue=compute; remote_address=136.172.50.13; submcom=/usr/bin/sbatch;; |
---|
424 | (lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom="/opt/moab/default/bin/msub -E";; |
---|
425 | (lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom="/opt/moab/default/bin/msub -E";; |
---|
426 | (lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;; |
---|
427 | (lceddy) remote_address=eddy.hpc.uni-oldenburg.de; submcom=sbatch;; |
---|
428 | (lcgeohu) remote_address=cirrus.geo.hu-berlin.de; submcom=sbatch;; |
---|
429 | (lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;; |
---|
430 | (lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;; |
---|
431 | (lckeal) queue=ivy; remote_address=172.27.80.109; submcom=/usr/bin/sbatch;; |
---|
432 | (lckiaps) remote_address=118.128.66.201; submcom=/opt/pbs/default/bin/qsub;; |
---|
433 | (lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;; |
---|
434 | (lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;; |
---|
435 | (lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;; |
---|
436 | (lclrz) remote_address=129.187.20.240; submcom=/usr/bin/sbatch;; |
---|
437 | (lcocean) remote_address="ocean"; submcom=qsub;; |
---|
438 | (lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;; |
---|
439 | (lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;; |
---|
440 | (lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;; |
---|
441 | (lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;; |
---|
442 | (lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;; |
---|
443 | (*) printf "\n +++ hostname \"$remote_host\" not allowed"; |
---|
444 | locat=parameter; exit;; |
---|
445 | esac |
---|
446 | fi |
---|
447 | |
---|
448 | |
---|
449 | # CHECK, IF A VALID QUEUE HAS BEEN GIVEN |
---|
450 | if [[ $no_default_queue != none ]] |
---|
451 | then |
---|
452 | error=false |
---|
453 | ndq=$no_default_queue |
---|
454 | case $remote_host in |
---|
455 | (ibm) case $ndq in |
---|
456 | (p690_express|p690_standard|p690_long) error=false;; |
---|
457 | (*) error=true;; |
---|
458 | esac;; |
---|
459 | (ibmh) case $ndq in |
---|
460 | (cluster|express) error=false;; |
---|
461 | (*) error=true;; |
---|
462 | esac;; |
---|
463 | (ibmkisti) case $ndq in |
---|
464 | (class.32plus|class.1-2|class.2-32) error=false;; |
---|
465 | (*) error=true;; |
---|
466 | esac;; |
---|
467 | (ibmku) case $ndq in |
---|
468 | (sdbg1|sdbg2|sdbg4|s4|s16|s32|s32-s) error=false;; |
---|
469 | (*) error=true;; |
---|
470 | esac;; |
---|
471 | (ibms) case $ndq in |
---|
472 | (express|normal|p_express|p_normal|p_normal_1.3|p_normal_1.7|grand) error=false;; |
---|
473 | (*) error=true;; |
---|
474 | esac;; |
---|
475 | (ibmmuc*) case $ndq in |
---|
476 | (test|micro|general|large|fat|fattest|special|tmp1|tmp2) error=false;; |
---|
477 | (*) error=true;; |
---|
478 | esac;; |
---|
479 | (lcbullhh) case $ndq in |
---|
480 | (compute|compute2|shared) error=false;; |
---|
481 | (*) error=true;; |
---|
482 | esac;; |
---|
483 | (lcbwuni) case $ndq in |
---|
484 | (develop|singlenode|multinode|verylong|fat) error=false;; |
---|
485 | (*) error=true;; |
---|
486 | esac;; |
---|
487 | (lccrayb) case $ndq in |
---|
488 | (dataq|mpp1q|mpp1testq|mpp2q|mpp2testq|smp1q|smp1testq|specialm1q) error=false;; |
---|
489 | (*) error=true;; |
---|
490 | esac;; |
---|
491 | (lccrayh) case $ndq in |
---|
492 | (dataq|mpp1q|mpp1testq|mpp2q|mpp2testq|smp1q|smp1testq|specialm1q) error=false;; |
---|
493 | (*) error=true;; |
---|
494 | esac;; |
---|
495 | (lccrayf) case $ndq in |
---|
496 | (usup|test*|small|large) error=false;; |
---|
497 | (*) error=true;; |
---|
498 | esac;; |
---|
499 | (lceddy) case $ndq in |
---|
500 | (eddy.p|cfdh.p|cfdl.p|carl.p|mpcs.p|mpcl.p|mpcb.p|all_nodes.p) error=false;; |
---|
501 | (*) error=true;; |
---|
502 | esac;; |
---|
503 | (lckiaps) case $ndq in |
---|
504 | (express|normal|normal20|quickq) error=false;; |
---|
505 | (*) error=true;; |
---|
506 | esac;; |
---|
507 | (lckyoto) case $ndq in |
---|
508 | (eh|ph) error=false;; |
---|
509 | (*) error=true;; |
---|
510 | esac;; |
---|
511 | (lckyuh) case $ndq in |
---|
512 | (fx-dbg|fx-single|fx-small|fx-middle|fx-large) error=false;; |
---|
513 | (*) error=true;; |
---|
514 | esac;; |
---|
515 | (lckyut) case $ndq in |
---|
516 | (cx-dbg|cx-single|cx-small|cx-middle|cx-large) error=false;; |
---|
517 | (*) error=true;; |
---|
518 | esac;; |
---|
519 | (lclrz) case $ndq in |
---|
520 | (mpp1|mpp2|iuv2|myri) error=false;; |
---|
521 | (*) error=true;; |
---|
522 | esac;; |
---|
523 | (lctit) case $ndq in |
---|
524 | (G|L128|L256|L512H|S|S96|V) error=false;; |
---|
525 | (*) error=true;; |
---|
526 | esac;; |
---|
527 | (t3eb) case $ndq in |
---|
528 | (berte|p50|p100|p392|forfree|p25himem) error=false;; |
---|
529 | (*) error=true;; |
---|
530 | esac;; |
---|
531 | (t3eh) case $ndq in |
---|
532 | (para_t3e|em|k|l|lm|comp_t3e|c|p|ht) error=false;; |
---|
533 | (*) error=true;; |
---|
534 | esac;; |
---|
535 | (t3ej2|t3ej5) case $ndq in |
---|
536 | (low|normal|high) error=false;; |
---|
537 | (*) error=true;; |
---|
538 | esac;; |
---|
539 | (t3es) case $ndq in |
---|
540 | (batch|serial-4|pe4|p48|pe16|pe32|pe64|pe128) error=false;; |
---|
541 | (*) error=true;; |
---|
542 | esac;; |
---|
543 | esac |
---|
544 | if [[ $error = true ]] |
---|
545 | then |
---|
546 | printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed" |
---|
547 | locat=parameter; exit |
---|
548 | else |
---|
549 | queue=$no_default_queue |
---|
550 | fi |
---|
551 | fi |
---|
552 | |
---|
553 | |
---|
554 | |
---|
555 | # CHECK THE CPU-TIME |
---|
556 | # SPLIT TIME INTO HOURS, MINUTES, AND SECONDS |
---|
557 | done=false |
---|
558 | while [[ $done = false ]] |
---|
559 | do |
---|
560 | if (( $cputime <= 0 )) |
---|
561 | then |
---|
562 | printf "\n +++ wrong cpu-time or cpu-time missing" |
---|
563 | printf "\n >>> Please type cpu-time in seconds as INTEGER:" |
---|
564 | printf "\n >>> " |
---|
565 | read cputime 1>/dev/null 2>&1 |
---|
566 | else |
---|
567 | done=true |
---|
568 | fi |
---|
569 | done |
---|
570 | (( stunden = cputime / 3600 )) |
---|
571 | (( resttime = cputime - stunden * 3600 )) |
---|
572 | (( minuten = resttime / 60 )) |
---|
573 | (( sekunden = resttime - minuten * 60 )) |
---|
574 | timestring=${stunden}:${minuten}:${sekunden} |
---|
575 | |
---|
576 | |
---|
577 | |
---|
578 | # CHECK THE MEMORY DEMAND |
---|
579 | done=false |
---|
580 | while [[ $done = false ]] |
---|
581 | do |
---|
582 | if (( memory <= 0 )) |
---|
583 | then |
---|
584 | printf "\n +++ wrong memory demand or memory demand missing" |
---|
585 | printf "\n >>> Please type memory in MByte per process as INTEGER:" |
---|
586 | printf "\n >>> " |
---|
587 | read memory 1>/dev/null 2>&1 |
---|
588 | else |
---|
589 | done=true |
---|
590 | fi |
---|
591 | done |
---|
592 | |
---|
593 | if [[ $remote_host = lctit ]] |
---|
594 | then |
---|
595 | (( Memory = memory * tasks_per_node / 1000 )) |
---|
596 | fi |
---|
597 | |
---|
598 | |
---|
599 | # MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS |
---|
600 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
601 | then |
---|
602 | (( memory = memory * threads_per_task )) |
---|
603 | fi |
---|
604 | |
---|
605 | |
---|
606 | # CALCULATE NUMBER OF REQUIRED NODES |
---|
607 | if (( tasks_per_node != 0 )) |
---|
608 | then |
---|
609 | (( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 )) |
---|
610 | fi |
---|
611 | |
---|
612 | |
---|
613 | # CALCULATE NUMBER OF PROCESSES PER NODE |
---|
614 | (( processes_per_node = tasks_per_node * threads_per_task )) |
---|
615 | |
---|
616 | |
---|
617 | # CALCULATE NUMBER OF MPI TASKS |
---|
618 | (( mpi_tasks = numprocs / threads_per_task )) |
---|
619 | |
---|
620 | |
---|
621 | # SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS |
---|
622 | if [[ "$scp_port" != "" ]] |
---|
623 | then |
---|
624 | PORTOPT="-P $scp_port" |
---|
625 | SSH_PORTOPT="-p $scp_port" |
---|
626 | fi |
---|
627 | |
---|
628 | |
---|
629 | # HEADER-OUTPUT |
---|
630 | if [[ $verify = true ]] |
---|
631 | then |
---|
632 | printf "\n\n" |
---|
633 | printf "#--------------------------------------------------------------# \n" |
---|
634 | spalte1=SUBJOB;spalte2=$(date) |
---|
635 | printf "| %-20s%40s | \n" "$spalte1" "$spalte2" |
---|
636 | printf "| | \n" |
---|
637 | printf "| values of parameters/options: | \n" |
---|
638 | spalte1=$(echo local_host$punkte | cut -c-20) |
---|
639 | spalte2=$punkte$local_host |
---|
640 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
641 | spalte1=$(echo remote_host$punkte | cut -c-20) |
---|
642 | spalte2=$punkte$remote_host |
---|
643 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
644 | spalte1=$(echo queue$punkte | cut -c-20) |
---|
645 | spalte2=$punkte$queue |
---|
646 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
647 | spalte1=$(echo memory$punkte | cut -c-20) |
---|
648 | spalte2="$punkte$memory mb" |
---|
649 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
650 | spalte1=$(echo cputime$punkte | cut -c-20) |
---|
651 | spalte2="$punkte$cputime sec" |
---|
652 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
653 | spalte1=$(echo job_name$punkte | cut -c-20) |
---|
654 | spalte2="$punkte$job_name" |
---|
655 | printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}" |
---|
656 | printf "#--------------------------------------------------------------# \n\n" |
---|
657 | |
---|
658 | |
---|
659 | # QUERY CHECK |
---|
660 | antwort="dummy" |
---|
661 | while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]] |
---|
662 | do |
---|
663 | read antwort?" >>> continue (y/n) ? " |
---|
664 | done |
---|
665 | if [[ $antwort = n || $antwort = N ]] |
---|
666 | then |
---|
667 | locat=verify; exit |
---|
668 | fi |
---|
669 | printf "\n" |
---|
670 | fi |
---|
671 | |
---|
672 | # GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST |
---|
673 | identifier=$RANDOM |
---|
674 | job_on_remhost=${job_name}_${identifier}_$local_host |
---|
675 | job_to_send=job_to_send_$identifier |
---|
676 | if [[ $delete_dayfile = false ]] |
---|
677 | then |
---|
678 | remote_dayfile=${local_host}_${job_name}_result_$identifier |
---|
679 | local_dayfile=${remote_host}_${job_name} |
---|
680 | else |
---|
681 | remote_dayfile=/dev/null |
---|
682 | fi |
---|
683 | |
---|
684 | |
---|
685 | # GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler) |
---|
686 | if [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs != 0 ]] |
---|
687 | then |
---|
688 | |
---|
689 | # GENERAL LOADLEVELER SETTINGS |
---|
690 | execute_in_shell="#!/bin/ksh" |
---|
691 | use_shell="# @ shell = /bin/ksh" |
---|
692 | consumable_memory="ConsumableMemory($memory mb)" |
---|
693 | class="# @ class = $queue" |
---|
694 | environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes" |
---|
695 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
696 | data_limit="# @ data_limit = 1.76gb" |
---|
697 | image_size="# @ image_size = 50" |
---|
698 | wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring" |
---|
699 | |
---|
700 | if [[ $email_notification = none ]] |
---|
701 | then |
---|
702 | notify_user="" |
---|
703 | else |
---|
704 | notify_user="# @ notify_user = $email_notification" |
---|
705 | if [[ $delete_dayfile = true ]] |
---|
706 | then |
---|
707 | notification='# @ notification = never' |
---|
708 | fi |
---|
709 | fi |
---|
710 | |
---|
711 | if [[ $remote_host = ibmh ]] |
---|
712 | then |
---|
713 | data_limit="" |
---|
714 | network_to_use="" |
---|
715 | class="# @ class = $queue" |
---|
716 | environment="" |
---|
717 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
718 | task_affinity="# @ task_affinity = core(1)" |
---|
719 | elif [[ $remote_host = ibmkisti ]] |
---|
720 | then |
---|
721 | network_to_use="# @ network.MPI = sn_all,shared,US" |
---|
722 | wall_clock_limit="# @ wall_clock_limit = $timestring" |
---|
723 | if [[ $threads_per_task = 1 ]] |
---|
724 | then |
---|
725 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
726 | mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute" |
---|
727 | fi |
---|
728 | environment="" |
---|
729 | use_shell="" |
---|
730 | data_limit="" |
---|
731 | image_size="" |
---|
732 | elif [[ $remote_host = ibmku ]] |
---|
733 | then |
---|
734 | execute_in_shell="#!/usr/bin/ksh" |
---|
735 | use_shell="# @ shell = /usr/bin/ksh" |
---|
736 | consumable_memory="" |
---|
737 | environment="" |
---|
738 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
739 | data_limit="" |
---|
740 | image_size="" |
---|
741 | elif [[ $remote_host = ibms ]] |
---|
742 | then |
---|
743 | network_to_use="# @ network.mpi = csss,shared,us" |
---|
744 | fi |
---|
745 | |
---|
746 | cat > $job_to_send << %%END%% |
---|
747 | $execute_in_shell |
---|
748 | $use_shell |
---|
749 | |
---|
750 | # @ job_type = parallel |
---|
751 | # @ job_name = $job_name |
---|
752 | # @ resources = ConsumableCpus($threads_per_task) $consumable_memory |
---|
753 | # @ output = $remote_dayfile |
---|
754 | # @ error = $remote_dayfile |
---|
755 | $wall_clock_limit |
---|
756 | $image_size |
---|
757 | $class |
---|
758 | $environment |
---|
759 | $network_to_use |
---|
760 | $data_limit |
---|
761 | $rset |
---|
762 | $mcm_affinity_options |
---|
763 | $task_affinity |
---|
764 | $notification |
---|
765 | $notify_user |
---|
766 | |
---|
767 | %%END%% |
---|
768 | |
---|
769 | if (( nodes > 0 )) |
---|
770 | then |
---|
771 | |
---|
772 | if [[ $remote_host == ibmmuc* ]] |
---|
773 | then |
---|
774 | cat > $job_to_send << %%END%% |
---|
775 | |
---|
776 | #!/bin/bash |
---|
777 | # @ job_type = parallel |
---|
778 | # @ job_name = $job_name |
---|
779 | # @ output = $remote_dayfile |
---|
780 | # @ error = $remote_dayfile |
---|
781 | # @ wall_clock_limit = $timestring |
---|
782 | $class |
---|
783 | $mcm_affinity_options |
---|
784 | $task_affinity |
---|
785 | $notify_user |
---|
786 | # @ network.MPI = sn_all,not_shared,us |
---|
787 | # @ notification = always |
---|
788 | # @ energy_policy_tag = table_kit_ifu |
---|
789 | # @ minimize_time_to_solution = yes |
---|
790 | # @ node = $nodes |
---|
791 | # @ total_tasks = $numprocs |
---|
792 | # @ node_topology = island |
---|
793 | # @ island_count = 1,2 |
---|
794 | # @ environment = LD_LIBRARY_PATH=/lrz/sys/libraries/netcdf/4.2.1.1_impi4/lib:/lrz/sys/libraries/hdf5/1.8.15/ibmmpi/lib:/lrz/sys/libraries/fftw/3.3.3/avx/lib/ |
---|
795 | # @ queue |
---|
796 | |
---|
797 | %%END%% |
---|
798 | |
---|
799 | elif [[ $remote_host != ibmkisti ]] |
---|
800 | then |
---|
801 | |
---|
802 | cat >> $job_to_send << %%END%% |
---|
803 | # @ node = $nodes |
---|
804 | # @ tasks_per_node = $processes_per_node |
---|
805 | # @ node_usage = $node_usage |
---|
806 | # @ queue |
---|
807 | |
---|
808 | %%END%% |
---|
809 | |
---|
810 | else |
---|
811 | |
---|
812 | cat >> $job_to_send << %%END%% |
---|
813 | # @ total_tasks = $mpi_tasks |
---|
814 | # @ blocking = unlimited |
---|
815 | # @ queue |
---|
816 | |
---|
817 | %%END%% |
---|
818 | |
---|
819 | fi |
---|
820 | |
---|
821 | else |
---|
822 | |
---|
823 | cat >> $job_to_send << %%END%% |
---|
824 | # @ blocking = unlimited |
---|
825 | # @ total_tasks = $numprocs |
---|
826 | # @ node_usage = $node_usage |
---|
827 | # @ queue |
---|
828 | |
---|
829 | %%END%% |
---|
830 | |
---|
831 | fi |
---|
832 | |
---|
833 | # WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti |
---|
834 | if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]] |
---|
835 | then |
---|
836 | echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send |
---|
837 | fi |
---|
838 | |
---|
839 | elif [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs = 0 ]] |
---|
840 | then |
---|
841 | |
---|
842 | cat > $job_to_send << %%END%% |
---|
843 | #!/bin/ksh |
---|
844 | |
---|
845 | # @ job_type = serial |
---|
846 | # @ node_usage = $node_usage |
---|
847 | # @ job_name = palm |
---|
848 | # @ wall_clock_limit = ${timestring},$timestring |
---|
849 | # @ resources = ConsumableCpus(1) ConsumableMemory(1 gb) |
---|
850 | # @ output = $remote_dayfile |
---|
851 | # @ error = $remote_dayfile |
---|
852 | $class |
---|
853 | $notification |
---|
854 | |
---|
855 | # @ queue |
---|
856 | |
---|
857 | %%END%% |
---|
858 | |
---|
859 | elif [[ $remote_host = lcbullhh ]] |
---|
860 | then |
---|
861 | if [[ $numprocs != 0 ]] |
---|
862 | then |
---|
863 | cat > $job_to_send << %%END%% |
---|
864 | #!/bin/bash -l |
---|
865 | #SBATCH -J $job_name |
---|
866 | #SBATCH -t $timestring |
---|
867 | #SBATCH -N $nodes |
---|
868 | #SBATCH --ntasks-per-node=$processes_per_node |
---|
869 | #SBATCH -p $queue |
---|
870 | #SBATCH -o $remote_dayfile |
---|
871 | #SBATCH -e $remote_dayfile |
---|
872 | #SBATCH -A $project_account |
---|
873 | |
---|
874 | $init_cmds |
---|
875 | $module_calls |
---|
876 | |
---|
877 | %%END%% |
---|
878 | |
---|
879 | else |
---|
880 | cat > $job_to_send << %%END%% |
---|
881 | #!/bin/bash -l |
---|
882 | #SBATCH -J $job_name |
---|
883 | #SBATCH -t $timestring |
---|
884 | #SBATCH -l ncpus=1 |
---|
885 | #SBATCH -l pmem=${memory}mb |
---|
886 | #SBATCH -m abe |
---|
887 | #SBATCH -o $remote_dayfile |
---|
888 | #SBATCH -e $remote_dayfile |
---|
889 | #SBATCH -A $project_account |
---|
890 | |
---|
891 | $init_cmds |
---|
892 | $module_calls |
---|
893 | |
---|
894 | %%END%% |
---|
895 | |
---|
896 | fi |
---|
897 | |
---|
898 | elif [[ $remote_host = lccrayb || $remote_host = lccrayh ]] |
---|
899 | then |
---|
900 | |
---|
901 | if [[ "$feature" != "" ]] |
---|
902 | then |
---|
903 | featuredir="#PBS -l feature=$feature" |
---|
904 | fi |
---|
905 | |
---|
906 | if [[ $numprocs != 0 ]] |
---|
907 | then |
---|
908 | cat > $job_to_send << %%END%% |
---|
909 | #!/bin/bash |
---|
910 | #PBS -N $job_name |
---|
911 | #PBS -l walltime=$timestring |
---|
912 | #PBS -l nodes=$nodes:ppn=$processes_per_node |
---|
913 | #PBS -o $remote_dayfile |
---|
914 | #PBS -j oe |
---|
915 | #PBS -q $queue |
---|
916 | $featuredir |
---|
917 | |
---|
918 | $init_cmds |
---|
919 | $module_calls |
---|
920 | |
---|
921 | %%END%% |
---|
922 | |
---|
923 | else |
---|
924 | |
---|
925 | continue |
---|
926 | |
---|
927 | fi |
---|
928 | |
---|
929 | elif [[ $remote_host = lccrayf ]] |
---|
930 | then |
---|
931 | |
---|
932 | if [[ $numprocs != 0 ]] |
---|
933 | then |
---|
934 | cat > $job_to_send << %%END%% |
---|
935 | #!/bin/bash -l |
---|
936 | #SBATCH -J $job_name |
---|
937 | #SBATCH -t $timestring |
---|
938 | #SBATCH -N $nodes |
---|
939 | #SBATCH --ntasks-per-node=$processes_per_node |
---|
940 | #SBATCH -p $queue |
---|
941 | #SBATCH -o $remote_dayfile |
---|
942 | #SBATCH -e $remote_dayfile |
---|
943 | |
---|
944 | $init_cmds |
---|
945 | $module_calls |
---|
946 | |
---|
947 | %%END%% |
---|
948 | |
---|
949 | else |
---|
950 | cat > $job_to_send << %%END%% |
---|
951 | #!/bin/bash -l |
---|
952 | #SBATCH -J $job_name |
---|
953 | #SBATCH -t $timestring |
---|
954 | #SBATCH -l ncpus=1 |
---|
955 | #SBATCH -l pmem=${memory}mb |
---|
956 | #SBATCH -m abe |
---|
957 | #SBATCH -o $remote_dayfile |
---|
958 | #SBATCH -e $remote_dayfile |
---|
959 | |
---|
960 | $init_cmds |
---|
961 | $module_calls |
---|
962 | |
---|
963 | %%END%% |
---|
964 | |
---|
965 | fi |
---|
966 | |
---|
967 | |
---|
968 | |
---|
969 | elif [[ $remote_host = lceddy ]] |
---|
970 | then |
---|
971 | cat > $job_to_send << %%END%% |
---|
972 | #!/bin/bash |
---|
973 | #SBATCH -J $job_name |
---|
974 | #SBATCH -t $timestring |
---|
975 | #SBATCH -n $numprocs |
---|
976 | #SBATCH -N $nodes |
---|
977 | #SBATCH --cpus-per-task 1 |
---|
978 | #SBATCH -p $queue |
---|
979 | #SBATCH -o $remote_dayfile |
---|
980 | #SBATCH -e $remote_dayfile |
---|
981 | #SBATCH --mem-per-cpu $memory |
---|
982 | #SBATCH --exclusive |
---|
983 | |
---|
984 | module load PALMDependencies/.gcc |
---|
985 | |
---|
986 | $init_cmds |
---|
987 | $module_calls |
---|
988 | |
---|
989 | %%END%% |
---|
990 | |
---|
991 | elif [[ $remote_host = lck || $remote_host = lckordi || $remote_host = lcsb ]] |
---|
992 | then |
---|
993 | |
---|
994 | if [[ $numprocs != 0 ]] |
---|
995 | then |
---|
996 | cat > $job_to_send << %%END%% |
---|
997 | #!/bin/ksh |
---|
998 | #PBS -N $job_name |
---|
999 | #PBS -l walltime=$timestring |
---|
1000 | #PBS -l ncpus=$numprocs |
---|
1001 | #PBS -l pmem=${memory}mb |
---|
1002 | #PBS -o $remote_dayfile |
---|
1003 | #PBS -l nodes=$nodes:ppn=${processes_per_node} |
---|
1004 | #PBS -j oe |
---|
1005 | |
---|
1006 | mpd & |
---|
1007 | |
---|
1008 | %%END%% |
---|
1009 | |
---|
1010 | else |
---|
1011 | cat > $job_to_send << %%END%% |
---|
1012 | #!/bin/ksh |
---|
1013 | #PBS -N $job_name |
---|
1014 | #PBS -l walltime=$timestring |
---|
1015 | #PBS -l ncpus=1 |
---|
1016 | #PBS -l pmem=${memory}mb |
---|
1017 | #PBS -o $remote_dayfile |
---|
1018 | #PBS -j oe |
---|
1019 | |
---|
1020 | %%END%% |
---|
1021 | |
---|
1022 | fi |
---|
1023 | |
---|
1024 | elif [[ $remote_host = lcgeohu ]] |
---|
1025 | then |
---|
1026 | |
---|
1027 | if [[ $email_notification = none ]] |
---|
1028 | then |
---|
1029 | notify_user="" |
---|
1030 | else |
---|
1031 | notify_user="#SBATCH --mail-type=ALL" |
---|
1032 | fi |
---|
1033 | |
---|
1034 | if [[ $numprocs != 0 ]] |
---|
1035 | then |
---|
1036 | cat > $job_to_send << %%END%% |
---|
1037 | #!/bin/bash |
---|
1038 | #SBATCH --job-name=$job_name |
---|
1039 | #SBATCH --ntasks=$processes_per_node |
---|
1040 | #SBATCH --time=$timestring |
---|
1041 | #SBATCH --output=$remote_dayfile |
---|
1042 | #SBATCH --error=$remote_dayfile |
---|
1043 | #SBATCH --qos=short |
---|
1044 | $notify_user |
---|
1045 | |
---|
1046 | $init_cmds |
---|
1047 | $module_calls |
---|
1048 | |
---|
1049 | %%END%% |
---|
1050 | |
---|
1051 | else |
---|
1052 | cat > $job_to_send << %%END%% |
---|
1053 | #!/bin/bash |
---|
1054 | #SBATCH --job-name=$job_name |
---|
1055 | #SBATCH --ntasks=$processes_per_node |
---|
1056 | #SBATCH --output=$remote_dayfile |
---|
1057 | #SBATCH --error=$remote_dayfile |
---|
1058 | #SBATCH -l ncpus=1 |
---|
1059 | |
---|
1060 | $init_cmds |
---|
1061 | $module_calls |
---|
1062 | |
---|
1063 | %%END%% |
---|
1064 | |
---|
1065 | fi |
---|
1066 | |
---|
1067 | elif [[ $remote_host = lckiaps ]] |
---|
1068 | then |
---|
1069 | |
---|
1070 | if [[ $numprocs != 0 ]] |
---|
1071 | then |
---|
1072 | cat > $job_to_send << %%END%% |
---|
1073 | #!/bin/bash |
---|
1074 | #PBS -N $job_name |
---|
1075 | #PBS -l walltime=$timestring |
---|
1076 | #PBS -l select=1:ncpus=$numprocs |
---|
1077 | #PBS -l pmem=${memory}mb |
---|
1078 | #PBS -q $queue |
---|
1079 | #PBS -o $remote_dayfile |
---|
1080 | #PBS -j oe |
---|
1081 | #PBS -V |
---|
1082 | |
---|
1083 | %%END%% |
---|
1084 | |
---|
1085 | else |
---|
1086 | cat > $job_to_send << %%END%% |
---|
1087 | #!/bin/bash |
---|
1088 | #PBS -N $job_name |
---|
1089 | #PBS -l walltime=$timestring |
---|
1090 | #PBS -l ncpus=1 |
---|
1091 | #PBS -l pmem=${memory}mb |
---|
1092 | #PBS -o $remote_dayfile |
---|
1093 | #PBS -j oe |
---|
1094 | |
---|
1095 | %%END%% |
---|
1096 | |
---|
1097 | fi |
---|
1098 | |
---|
1099 | elif [[ $remote_host = lcyon ]] |
---|
1100 | then |
---|
1101 | |
---|
1102 | if [[ $numprocs != 0 ]] |
---|
1103 | then |
---|
1104 | cat > $job_to_send << %%END%% |
---|
1105 | #!/bin/ksh |
---|
1106 | #PBS -N $job_name |
---|
1107 | #PBS -l walltime=$timestring |
---|
1108 | #PBS -l ncpus=$numprocs |
---|
1109 | #PBS -l pmem=${memory}mb |
---|
1110 | #PBS -o $remote_dayfile |
---|
1111 | #PBS -j oe |
---|
1112 | |
---|
1113 | %%END%% |
---|
1114 | |
---|
1115 | else |
---|
1116 | cat > $job_to_send << %%END%% |
---|
1117 | #!/bin/ksh |
---|
1118 | #PBS -N $job_name |
---|
1119 | #PBS -l walltime=$timestring |
---|
1120 | #PBS -l ncpus=1 |
---|
1121 | #PBS -l pmem=${memory}mb |
---|
1122 | #PBS -o $remote_dayfile |
---|
1123 | #PBS -j oe |
---|
1124 | |
---|
1125 | %%END%% |
---|
1126 | |
---|
1127 | fi |
---|
1128 | |
---|
1129 | elif [[ $remote_host = lcxe6 ]] |
---|
1130 | then |
---|
1131 | |
---|
1132 | if [[ $numprocs != 0 ]] |
---|
1133 | then |
---|
1134 | cat > $job_to_send << %%END%% |
---|
1135 | #!/bin/ksh |
---|
1136 | #PBS -S /bin/ksh |
---|
1137 | #PBS -N $job_name |
---|
1138 | #PBS -A $project_account |
---|
1139 | #PBS -j oe |
---|
1140 | #PBS -l walltime=$timestring |
---|
1141 | #PBS -l mppwidth=${numprocs} |
---|
1142 | #PBS -l mppnppn=${processes_per_node} |
---|
1143 | #PBS -m abe |
---|
1144 | #PBS -o $remote_dayfile |
---|
1145 | $email_directive |
---|
1146 | |
---|
1147 | $init_cmds |
---|
1148 | $module_calls |
---|
1149 | |
---|
1150 | %%END%% |
---|
1151 | |
---|
1152 | else |
---|
1153 | cat > $job_to_send << %%END%% |
---|
1154 | #!/bin/ksh |
---|
1155 | #PBS -S /bin/ksh |
---|
1156 | #PBS -N $job_name |
---|
1157 | #PBS -A $project_account |
---|
1158 | #PBS -j oe |
---|
1159 | #PBS -l walltime=$timestring |
---|
1160 | #PBS -l ncpus=1 |
---|
1161 | #PBS -l pmem=${memory}mb |
---|
1162 | #PBS -m abe |
---|
1163 | $email_directive |
---|
1164 | #PBS -o $remote_dayfile |
---|
1165 | |
---|
1166 | $init_cmds |
---|
1167 | $module_calls |
---|
1168 | |
---|
1169 | %%END%% |
---|
1170 | |
---|
1171 | fi |
---|
1172 | |
---|
1173 | elif [[ $remote_host = lckyoto ]] |
---|
1174 | then |
---|
1175 | |
---|
1176 | cat > $job_to_send << %%END%% |
---|
1177 | #!/bin/ksh |
---|
1178 | # @\$-o $remote_dayfile |
---|
1179 | # @\$-eo -oi |
---|
1180 | # @\$-lP 16 |
---|
1181 | # @\$-lp 1 |
---|
1182 | # @\$-lm 28gb -llm unlimited -ls unlimited |
---|
1183 | # @\$-q $queue |
---|
1184 | # @\$-Pvn abs_pack |
---|
1185 | ##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack |
---|
1186 | #. /thin/local/etc/setprofile/intel-11.0.sh |
---|
1187 | #. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh |
---|
1188 | . ~/.myprofile |
---|
1189 | #. /home2/t/t51254/palm/current_version/myprofile |
---|
1190 | #. /thin/apps/pgi/mpi.sh |
---|
1191 | # |
---|
1192 | env |
---|
1193 | # |
---|
1194 | set -x |
---|
1195 | |
---|
1196 | %%END%% |
---|
1197 | |
---|
1198 | elif [[ $remote_host = lcxt5m ]] |
---|
1199 | then |
---|
1200 | |
---|
1201 | if [[ $numprocs != 0 ]] |
---|
1202 | then |
---|
1203 | cat > $job_to_send << %%END%% |
---|
1204 | #!/bin/ksh |
---|
1205 | #PBS -S /bin/ksh |
---|
1206 | #PBS -N $job_name |
---|
1207 | #PBS -j oe |
---|
1208 | #PBS -l walltime=$timestring |
---|
1209 | #PBS -l mppwidth=${numprocs} |
---|
1210 | #PBS -l mppnppn=${processes_per_node} |
---|
1211 | #PBS -m abe |
---|
1212 | #PBS -o $remote_dayfile |
---|
1213 | |
---|
1214 | $init_cmds |
---|
1215 | $module_calls |
---|
1216 | |
---|
1217 | %%END%% |
---|
1218 | |
---|
1219 | else |
---|
1220 | cat > $job_to_send << %%END%% |
---|
1221 | #!/bin/ksh |
---|
1222 | #PBS -S /bin/ksh |
---|
1223 | #PBS -N $job_name |
---|
1224 | #PBS -j oe |
---|
1225 | #PBS -l walltime=$timestring |
---|
1226 | #PBS -l ncpus=1 |
---|
1227 | #PBS -l pmem=${memory}mb |
---|
1228 | #PBS -m abe |
---|
1229 | #PBS -o $remote_dayfile |
---|
1230 | |
---|
1231 | $init_cmds |
---|
1232 | $module_calls |
---|
1233 | |
---|
1234 | %%END%% |
---|
1235 | |
---|
1236 | fi |
---|
1237 | |
---|
1238 | elif [[ $remote_host = lckyuh ]] |
---|
1239 | then |
---|
1240 | cat > $job_to_send << %%END%% |
---|
1241 | #!/bin/bash |
---|
1242 | #PJM -L "rscgrp=$queue" |
---|
1243 | #PJM -L "node=$nodes" |
---|
1244 | #PJM --mpi "proc=$numprocs" |
---|
1245 | #PJM -L "elapse=$timestring" |
---|
1246 | #PJM -o $remote_dayfile |
---|
1247 | #PJM -j |
---|
1248 | #PJM -X |
---|
1249 | #PJM --no-stging |
---|
1250 | |
---|
1251 | export LANG=en_US.UTF-8 |
---|
1252 | %%END%% |
---|
1253 | |
---|
1254 | elif [[ $remote_host = lckyut ]] |
---|
1255 | then |
---|
1256 | cat > $job_to_send << %%END%% |
---|
1257 | #!/bin/bash |
---|
1258 | #PJM -L "rscgrp=$queue" |
---|
1259 | #PJM -L "vnode=$numprocs" |
---|
1260 | #PJM -L "vnode-core=1" |
---|
1261 | #PJM -L "elapse=$timestring" |
---|
1262 | #PJM --mpi proc=$numprocs |
---|
1263 | #PJM -o $remote_dayfile |
---|
1264 | #PJM -j |
---|
1265 | #PJM -X |
---|
1266 | #PJM --no-stging |
---|
1267 | |
---|
1268 | export LANG=en_US.UTF-8 |
---|
1269 | %%END%% |
---|
1270 | |
---|
1271 | elif [[ $remote_host = lcocean ]] |
---|
1272 | then |
---|
1273 | cat > $job_to_send << %%END%% |
---|
1274 | #!/bin/bash |
---|
1275 | #$ -cwd |
---|
1276 | #$ -V |
---|
1277 | #$ -N $job_name |
---|
1278 | #$ -pe orte $numprocs |
---|
1279 | #$ -o $remote_dayfile |
---|
1280 | #$ -j y |
---|
1281 | #$ -R y |
---|
1282 | $init_cmds |
---|
1283 | $module_calls |
---|
1284 | |
---|
1285 | %%END%% |
---|
1286 | |
---|
1287 | elif [[ $remote_host = lctit ]] |
---|
1288 | then |
---|
1289 | cat > $job_to_send << %%END%% |
---|
1290 | #!/bin/ksh |
---|
1291 | $init_cmds |
---|
1292 | $module_calls |
---|
1293 | |
---|
1294 | %%END%% |
---|
1295 | |
---|
1296 | # SET OPTIONS FOR SUBMIT-COMMAND |
---|
1297 | if [[ $tasks_per_node != $processes_per_node ]] |
---|
1298 | then |
---|
1299 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue " |
---|
1300 | else |
---|
1301 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue " |
---|
1302 | fi |
---|
1303 | |
---|
1304 | elif [[ $remote_host = lclrz ]] |
---|
1305 | then |
---|
1306 | cat > $job_to_send << %%END%% |
---|
1307 | #!/bin/bash |
---|
1308 | #SBATCH -J $job_name |
---|
1309 | #SBATCH -t $timestring |
---|
1310 | #SBATCH -N $nodes |
---|
1311 | #SBATCH --ntasks-per-node=$processes_per_node |
---|
1312 | #SBATCH --get-user-env |
---|
1313 | #SBATCH -o $remote_dayfile |
---|
1314 | #SBATCH -e $remote_dayfile |
---|
1315 | #SBATCH --mail-user=${email_notification} |
---|
1316 | #SBATCH --clusters=$queue |
---|
1317 | |
---|
1318 | $init_cmds |
---|
1319 | |
---|
1320 | $module_calls |
---|
1321 | |
---|
1322 | %%END%% |
---|
1323 | |
---|
1324 | elif [[ $remote_host = lckea* ]] |
---|
1325 | then |
---|
1326 | keal_tasks_per_core=1 |
---|
1327 | |
---|
1328 | if [[ $queue = haswell || $queue = ivy* ]] |
---|
1329 | then |
---|
1330 | if (( tasks_per_node > 20 )) |
---|
1331 | then |
---|
1332 | keal_tasks_per_core=2 |
---|
1333 | fi |
---|
1334 | fi |
---|
1335 | |
---|
1336 | cat > $job_to_send << %%END%% |
---|
1337 | #!/bin/bash |
---|
1338 | #SBATCH -J $job_name |
---|
1339 | #SBATCH -t $timestring |
---|
1340 | #SBATCH -N $nodes |
---|
1341 | #SBATCH --ntasks-per-node=$processes_per_node |
---|
1342 | #SBATCH --ntasks-per-core=$keal_tasks_per_core |
---|
1343 | #SBATCH --mem-per-cpu=${memory}mb |
---|
1344 | #SBATCH --get-user-env |
---|
1345 | #SBATCH -o $remote_dayfile |
---|
1346 | #SBATCH -e $remote_dayfile |
---|
1347 | #SBATCH --mail-user=${email_notification} |
---|
1348 | #SBATCH --mail-type=ALL |
---|
1349 | #SBATCH --partition=$queue |
---|
1350 | |
---|
1351 | export MV2_ENABLE_AFFINITY=0 |
---|
1352 | |
---|
1353 | $init_cmds |
---|
1354 | |
---|
1355 | $module_calls |
---|
1356 | |
---|
1357 | %%END%% |
---|
1358 | |
---|
1359 | elif [[ $remote_host=lcbwuni ]] |
---|
1360 | then |
---|
1361 | if [[ $email_notification = none ]] |
---|
1362 | then |
---|
1363 | email_directive="" |
---|
1364 | else |
---|
1365 | email_directive="#PBS -M $email_notification" |
---|
1366 | fi |
---|
1367 | cat > $job_to_send << %%END%% |
---|
1368 | #!/bin/ksh |
---|
1369 | #PBS -N $job_name |
---|
1370 | #PBS -l walltime=$timestring |
---|
1371 | #PBS -l nodes=${nodes}:ppn=$processes_per_node |
---|
1372 | #PBS -l pmem=${memory}mb |
---|
1373 | #PBS -m abe |
---|
1374 | #PBS -o $remote_dayfile |
---|
1375 | #PBS -j oe |
---|
1376 | #PBS -q $queue |
---|
1377 | $email_directive |
---|
1378 | %%END%% |
---|
1379 | |
---|
1380 | else |
---|
1381 | |
---|
1382 | cat > $job_to_send << %%END%% |
---|
1383 | # @\$-q ${queue} |
---|
1384 | # @\$-l${qsubtime} $timestring |
---|
1385 | # @\$-l${qsubmem} ${memory}mb |
---|
1386 | # @\$-o $remote_dayfile |
---|
1387 | # @\$-eo |
---|
1388 | |
---|
1389 | %%END%% |
---|
1390 | |
---|
1391 | fi |
---|
1392 | |
---|
1393 | |
---|
1394 | # IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES |
---|
1395 | # TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT |
---|
1396 | # NO TRANSFER POSSIBLE ON IBM IN SEOUL |
---|
1397 | if [[ $delete_dayfile = false && $remote_host != $local_host ]] |
---|
1398 | then |
---|
1399 | echo "set +vx" >> $job_to_send |
---|
1400 | echo "trap '" >> $job_to_send |
---|
1401 | echo "set +vx" >> $job_to_send |
---|
1402 | if [[ $(echo $remote_host | cut -c1-3) = ibm || $remote_host = lcbullhh || $remote_host = lccrayb || $remote_host = lccrayh || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lckiaps || $remote_host = lckyu* || $remote_host = lcxe6 || $remote_host = lcocean || $remote_host = lcgeohu ]] |
---|
1403 | then |
---|
1404 | if [[ $remote_host = ibmh ]] |
---|
1405 | then |
---|
1406 | return_queue=c1 |
---|
1407 | elif [[ $remote_host = ibmkisti ]] |
---|
1408 | then |
---|
1409 | return_queue=class.1-2 |
---|
1410 | elif [[ $remote_host = ibmku ]] |
---|
1411 | then |
---|
1412 | return_queue=sdbg2 |
---|
1413 | elif [[ $remote_host = ibms ]] |
---|
1414 | then |
---|
1415 | return_queue=p_normal |
---|
1416 | elif [[ $remote_host = lcbullhh ]] |
---|
1417 | then |
---|
1418 | return_queue=shared |
---|
1419 | elif [[ $remote_host = lccrayb || $remote_host = lccrayh ]] |
---|
1420 | then |
---|
1421 | return_queue=dataq |
---|
1422 | elif [[ $remote_host = lcxe6 ]] |
---|
1423 | then |
---|
1424 | return_queue=debug |
---|
1425 | elif [[ $remote_host = lckiaps ]] |
---|
1426 | then |
---|
1427 | return_queue=express |
---|
1428 | elif [[ $remote_host = lckyuh ]] |
---|
1429 | then |
---|
1430 | return_queue=cx-single |
---|
1431 | elif [[ $remote_host = lckyut ]] |
---|
1432 | then |
---|
1433 | return_queue=cx-single |
---|
1434 | else |
---|
1435 | return_queue=unknown |
---|
1436 | fi |
---|
1437 | |
---|
1438 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
1439 | then |
---|
1440 | |
---|
1441 | if [[ $remote_host = ibmku ]] |
---|
1442 | then |
---|
1443 | echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send |
---|
1444 | echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send |
---|
1445 | else |
---|
1446 | echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send |
---|
1447 | fi |
---|
1448 | echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send |
---|
1449 | echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send |
---|
1450 | echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send |
---|
1451 | echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send |
---|
1452 | echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send |
---|
1453 | echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send |
---|
1454 | if [[ $host != "ibmh" ]] |
---|
1455 | then |
---|
1456 | echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send |
---|
1457 | fi |
---|
1458 | echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send |
---|
1459 | echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send |
---|
1460 | |
---|
1461 | echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send |
---|
1462 | echo "echo \" \" >> scpjob.$identifier" >> $job_to_send |
---|
1463 | |
---|
1464 | echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send |
---|
1465 | echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send |
---|
1466 | if [[ $remote_host = ibmku ]] |
---|
1467 | then |
---|
1468 | echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send |
---|
1469 | fi |
---|
1470 | echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send |
---|
1471 | |
---|
1472 | elif [[ $remote_host = lcbullhh ]] |
---|
1473 | then |
---|
1474 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1475 | echo "#!/bin/bash" >> $job_to_send |
---|
1476 | echo "#SBATCH --job-name=job_protocol_transfer" >> $job_to_send |
---|
1477 | echo "#SBATCH -t 00:20:00" >> $job_to_send |
---|
1478 | echo "#SBATCH -N 1" >> $job_to_send |
---|
1479 | echo "#SBATCH -n 1" >> $job_to_send |
---|
1480 | echo "#SBATCH -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1481 | echo "#SBATCH -o $remote_dayfile" >> $job_to_send |
---|
1482 | echo "#SBATCH -e $remote_dayfile" >> $job_to_send |
---|
1483 | echo "#SBATCH -A $project_account" >> $job_to_send |
---|
1484 | echo "#SBATCH -p $return_queue" >> $job_to_send |
---|
1485 | echo " " >> $job_to_send |
---|
1486 | echo "set -x" >> $job_to_send |
---|
1487 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1488 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1489 | echo "%%END%%" >> $job_to_send |
---|
1490 | |
---|
1491 | elif [[ $remote_host = lckyuh ]] |
---|
1492 | then |
---|
1493 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1494 | echo "#!/bin/bash" >> $job_to_send |
---|
1495 | echo "#PJM -L \"node=1\"" >> $job_to_send |
---|
1496 | echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send |
---|
1497 | echo "#PJM --no-stging" >> $job_to_send |
---|
1498 | echo "#PJM -L \"elapse=30:00\"" >> $job_to_send |
---|
1499 | echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1500 | echo "#PJM -j" >> $job_to_send |
---|
1501 | echo " " >> $job_to_send |
---|
1502 | echo "export LANG=en_US.UTF-8" >> $job_to_send |
---|
1503 | echo "set -x" >> $job_to_send |
---|
1504 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1505 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1506 | echo "%%END%%" >> $job_to_send |
---|
1507 | |
---|
1508 | elif [[ $remote_host = lckyut ]] |
---|
1509 | then |
---|
1510 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1511 | echo "#!/bin/bash" >> $job_to_send |
---|
1512 | echo "#PJM -L \"vnode=1\"" >> $job_to_send |
---|
1513 | echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send |
---|
1514 | echo "#PJM --no-stging" >> $job_to_send |
---|
1515 | echo "#PJM -L \"elapse=30:00\"" >> $job_to_send |
---|
1516 | echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1517 | echo "#PJM -j" >> $job_to_send |
---|
1518 | echo " " >> $job_to_send |
---|
1519 | echo "export LANG=en_US.UTF-8" >> $job_to_send |
---|
1520 | echo "set -x" >> $job_to_send |
---|
1521 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1522 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1523 | echo "%%END%%" >> $job_to_send |
---|
1524 | |
---|
1525 | elif [[ $remote_host = lccrayb || $remote_host = lccrayh ]] |
---|
1526 | then |
---|
1527 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1528 | echo "#!/bin/bash" >> $job_to_send |
---|
1529 | echo "#PBS -N job_protocol_transfer" >> $job_to_send |
---|
1530 | echo "#PBS -l walltime=00:30:00" >> $job_to_send |
---|
1531 | echo "#PBS -l nodes=1:ppn=1" >> $job_to_send |
---|
1532 | echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1533 | echo "#PBS -j oe" >> $job_to_send |
---|
1534 | echo " " >> $job_to_send |
---|
1535 | echo "set -x" >> $job_to_send |
---|
1536 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1537 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1538 | echo "%%END%%" >> $job_to_send |
---|
1539 | |
---|
1540 | elif [[ $remote_host = lcocean ]] |
---|
1541 | then |
---|
1542 | echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send |
---|
1543 | echo "#!/bin/bash" >> $job_to_send |
---|
1544 | echo "SGEPREFIX -S /bin/bash" >> $job_to_send |
---|
1545 | echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send |
---|
1546 | echo "SGEPREFIX -cwd" >> $job_to_send |
---|
1547 | echo "SGEPREFIX -j y" >> $job_to_send |
---|
1548 | echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send |
---|
1549 | echo " " >> $job_to_send |
---|
1550 | echo "set -x" >> $job_to_send |
---|
1551 | echo "export PALM_BIN=$PALM_BIN" | sed -e 's:'$HOME':$HOME:' >> $job_to_send |
---|
1552 | echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send |
---|
1553 | echo "" >> $job_to_send |
---|
1554 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1555 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1556 | echo "rm -f scpjob.${identifier}" >> $job_to_send |
---|
1557 | echo "%%END%%" >> $job_to_send |
---|
1558 | echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send |
---|
1559 | echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send |
---|
1560 | |
---|
1561 | elif [[ $remote_host = lcxe6 ]] |
---|
1562 | then |
---|
1563 | echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send |
---|
1564 | echo "#!/bin/ksh" >> $job_to_send |
---|
1565 | echo "#PBS -N job_protocol_transfer" >> $job_to_send |
---|
1566 | echo "#PBS -l walltime=00:30:00" >> $job_to_send |
---|
1567 | echo "#PBS -A $project_account" >> $job_to_send |
---|
1568 | echo "#PBS -l mppwidth=1" >> $job_to_send |
---|
1569 | echo "#PBS -l mppnppn=1" >> $job_to_send |
---|
1570 | echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1571 | echo "#PBS -j oe" >> $job_to_send |
---|
1572 | echo " " >> $job_to_send |
---|
1573 | echo "set -x" >> $job_to_send |
---|
1574 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1575 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1576 | echo "%%END%%" >> $job_to_send |
---|
1577 | |
---|
1578 | elif [[ $remote_host = lcgeohu ]] |
---|
1579 | then |
---|
1580 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1581 | echo "#!/bin/bash" >> $job_to_send |
---|
1582 | echo "#SBATCH --job-name=job_protocol_transfer" >> $job_to_send |
---|
1583 | echo "#SBATCH -t 00:20:00" >> $job_to_send |
---|
1584 | echo "#SBATCH -N 1" >> $job_to_send |
---|
1585 | echo "#SBATCH -n 1" >> $job_to_send |
---|
1586 | echo "#SBATCH -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
1587 | echo "#SBATCH -o $remote_dayfile" >> $job_to_send |
---|
1588 | echo "#SBATCH -e $remote_dayfile" >> $job_to_send |
---|
1589 | echo " " >> $job_to_send |
---|
1590 | echo "set -x" >> $job_to_send |
---|
1591 | echo "sbatch scpjob.$identifier" >> $job_to_send |
---|
1592 | echo "%%END%%" >> $job_to_send |
---|
1593 | |
---|
1594 | else |
---|
1595 | |
---|
1596 | echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send |
---|
1597 | echo "# @\\\$-q $return_queue" >> $job_to_send |
---|
1598 | echo "# @\\\$-l${qsubtime} 10" >> $job_to_send |
---|
1599 | echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send |
---|
1600 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es ]] |
---|
1601 | then |
---|
1602 | echo "# @\$-l mpp_p=0" >> $job_to_send |
---|
1603 | fi |
---|
1604 | echo '# @\$-lF 10mb' >> $job_to_send |
---|
1605 | echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send |
---|
1606 | echo '# @\\\$-eo' >> $job_to_send |
---|
1607 | echo " " >> $job_to_send |
---|
1608 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
1609 | then |
---|
1610 | echo "set +vx" >> $job_to_send |
---|
1611 | echo ". .profile" >> $job_to_send |
---|
1612 | fi |
---|
1613 | echo "set -x" >> $job_to_send |
---|
1614 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send |
---|
1615 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
1616 | echo "%%END%%" >> $job_to_send |
---|
1617 | |
---|
1618 | fi |
---|
1619 | |
---|
1620 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
1621 | then |
---|
1622 | echo "llsubmit scpjob.$identifier" >> $job_to_send |
---|
1623 | elif [[ $remote_host = lcbullhh ]] |
---|
1624 | then |
---|
1625 | echo "sbatch scpjob.$identifier" >> $job_to_send |
---|
1626 | elif [[ $remote_host = lccrayb || $remote_host = lccrayh ]] |
---|
1627 | then |
---|
1628 | echo "msub -E -q $return_queue scpjob.$identifier" >> $job_to_send |
---|
1629 | elif [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
1630 | then |
---|
1631 | echo "qsub -J n scpjob.$identifier" >> $job_to_send |
---|
1632 | elif [[ $remote_host = t3es ]] |
---|
1633 | then |
---|
1634 | echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send |
---|
1635 | elif [[ $remote_host = lckiaps ]] |
---|
1636 | then |
---|
1637 | echo "mv scpjob.$identifier $job_catalog" >> $job_to_send |
---|
1638 | echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send |
---|
1639 | echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send |
---|
1640 | elif [[ $remote_host = lckyu* ]] |
---|
1641 | then |
---|
1642 | echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send |
---|
1643 | echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send |
---|
1644 | elif [[ $remote_host = lcocean ]] |
---|
1645 | then |
---|
1646 | echo "mv scpjob.$identifier $job_catalog" >> $job_to_send |
---|
1647 | echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send |
---|
1648 | else |
---|
1649 | echo "$submcom scpjob.$identifier" >> $job_to_send |
---|
1650 | fi |
---|
1651 | if [[ $remote_host != ibmku && $remote_host != lckiaps ]] |
---|
1652 | then |
---|
1653 | echo "rm scpjob.$identifier" >> $job_to_send |
---|
1654 | fi |
---|
1655 | else |
---|
1656 | # echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
1657 | # ??? funktioniert das ÃŒberhaupt noch ??? |
---|
1658 | echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send |
---|
1659 | fi |
---|
1660 | echo "set -x" >> $job_to_send |
---|
1661 | echo " ' exit" >> $job_to_send |
---|
1662 | echo "set -x" >> $job_to_send |
---|
1663 | fi |
---|
1664 | |
---|
1665 | |
---|
1666 | # APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE |
---|
1667 | cat $file_to_send >> $job_to_send |
---|
1668 | |
---|
1669 | if [[ $remote_host = ibm ]] |
---|
1670 | then |
---|
1671 | echo " " >> $job_to_send |
---|
1672 | echo "exit" >> $job_to_send |
---|
1673 | fi |
---|
1674 | |
---|
1675 | # REMOVE JOB-FILE |
---|
1676 | if [[ $remote_host = lctit || $remote_host = ibmku ]] |
---|
1677 | then |
---|
1678 | echo " " >> $job_to_send |
---|
1679 | echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send |
---|
1680 | fi |
---|
1681 | |
---|
1682 | |
---|
1683 | # TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY) |
---|
1684 | if [[ $no_submit = false ]] |
---|
1685 | then |
---|
1686 | if [[ $remote_host != $local_host ]] |
---|
1687 | then |
---|
1688 | [[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..." |
---|
1689 | if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/" |
---|
1690 | then |
---|
1691 | job_catalog_save=$job_catalog |
---|
1692 | job_catalog=job_queue |
---|
1693 | elif [[ $remote_host = lcgeohu ]] |
---|
1694 | then |
---|
1695 | job_catalog_save=$job_catalog |
---|
1696 | job_catalog=/home/${remote_user}/job_queue |
---|
1697 | fi |
---|
1698 | scp $ssh_key $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost |
---|
1699 | if [[ $? = 1 ]] |
---|
1700 | then |
---|
1701 | locat=scp; exit |
---|
1702 | fi |
---|
1703 | if [[ $remote_host = ibms || $remote_host = lcgeohu ]] |
---|
1704 | then |
---|
1705 | job_catalog=$job_catalog_save |
---|
1706 | fi |
---|
1707 | [[ $verify = true ]] && printf "\n >>> finished\n" |
---|
1708 | else |
---|
1709 | eval job_catalog=$job_catalog |
---|
1710 | cp $job_to_send ${job_catalog}/$job_on_remhost |
---|
1711 | fi |
---|
1712 | |
---|
1713 | |
---|
1714 | |
---|
1715 | # START NQS- / LOADLEVELER-JOB |
---|
1716 | if [[ $remote_host != $local_host ]] |
---|
1717 | then |
---|
1718 | [[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n" |
---|
1719 | |
---|
1720 | if [[ $remote_host = ibmku ]] |
---|
1721 | then |
---|
1722 | ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost" |
---|
1723 | elif [[ $remote_host = lcgeohu ]] |
---|
1724 | then |
---|
1725 | ssh $ssh_key $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost" |
---|
1726 | else |
---|
1727 | ssh $ssh_key $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost" |
---|
1728 | fi |
---|
1729 | |
---|
1730 | [[ $verify = true ]] && printf " >>> o.k.\n" |
---|
1731 | else |
---|
1732 | cd $job_catalog |
---|
1733 | if [[ $(echo $local_host | cut -c1-3) = ibm || $(echo $local_host | cut -c1-6) = lccray || $local_host = lceddy || $local_host = lcgeohu ]] |
---|
1734 | then |
---|
1735 | eval $submcom $job_on_remhost |
---|
1736 | elif [[ $local_host = lctit || $local_host = lcxe6 || $local_host = lck || $local_host = lckordi || $local_host = lcyon || $local_host = lcsb || $local_host = lckyu* ]] |
---|
1737 | then |
---|
1738 | chmod u+x $job_on_remhost |
---|
1739 | eval $submcom $job_on_remhost |
---|
1740 | elif [[ $local_host = lcbullhh ]] |
---|
1741 | then |
---|
1742 | if [[ $queue = default ]] |
---|
1743 | then |
---|
1744 | eval $submcom $job_on_remhost |
---|
1745 | fi |
---|
1746 | elif [[ $local_host = lclrz || $local_host = lckea* ]] |
---|
1747 | then |
---|
1748 | eval $submcom $job_on_remhost |
---|
1749 | elif [[ $local_host = lcbwuni ]] |
---|
1750 | then |
---|
1751 | msub -q $queue $job_on_remhost |
---|
1752 | else |
---|
1753 | qsub $job_on_remhost |
---|
1754 | fi |
---|
1755 | |
---|
1756 | # JOBFILE MUST NOT BE DELETED ON lctit/ibmku. THIS WILL BE DONE |
---|
1757 | # AT THE END OF THE JOB |
---|
1758 | if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcgeohu ]] |
---|
1759 | then |
---|
1760 | rm $job_on_remhost |
---|
1761 | fi |
---|
1762 | cd - > /dev/null |
---|
1763 | fi |
---|
1764 | fi |
---|
1765 | |
---|
1766 | # FINAL ACTIONS |
---|
1767 | if [[ $no_submit = false ]] |
---|
1768 | then |
---|
1769 | rm -f $job_to_send |
---|
1770 | fi |
---|
1771 | [[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n" |
---|