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source: palm/trunk/SCRIPTS/subjob @ 1100

Last change on this file since 1100 was 1100, checked in by raasch, 12 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1100 2013-02-10 01:58:22Z raasch $
30	#
31	# 2013-02-10 01:47:43Z raasch
32	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
33	# and for Forwind cluster (lcflow)
34	#
35	# 1094 2013-02-03 01:52:12Z raasch
36	# new option -P for explicit setting of ssh/scp port,
37	# decalpha parts (yonsei) removed
38	#
39	# 2013-02-02 07:06:13Z raasch
40	# adjustments for Kyushu-University computing center (lckyut - tatara)
41	# old changelog messages removed
42	#
43	# 1046 2012-11-09 14:38:45Z maronga
44	# code put under GPL (PALM 3.9)
45	#
46	# 08/07/94 - Siggi - first version finished
47	# 29/06/94 - Siggi - script development started
48	#--------------------------------------------------------------------------------#
49	# subjob - script for automatic generation and submission of batch-job files
50	# for various batch queuing systems
51	#--------------------------------------------------------------------------------#
52
53
54	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
55	delete_dayfile=false
56	email_notification=none
57	group_number=none
58	locat=normal
59	no_default_queue=none
60	no_submit=false
61	job_catalog="~/job_queue"
62	job_name=none
63	local_user=$LOGNAME
64	node_usage=shared
65	numprocs=0
66	punkte="..........................................................."
67	submcom=qsub
68	queue=default
69	remote_host=none
70	remote_user=""
71	verify=true
72
73	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
74	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
75	typeset -L20 spalte1
76	typeset -R40 spalte2
77	typeset -L60 spalte3
78
79
80
81	# FEHLERBEHANDLUNG
82	# BEI EXIT:
83	trap 'if [[ $locat != normal ]]
84	then
85	case $locat in
86	(option) printf "\n --> available optios can be displayed"
87	printf " by typing:"
88	printf "\n \"subjob ?\" \n";;
89	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
90	(*) printf "\n +++ unknown error"
91	printf "\n please inform S. Raasch!\n"
92	esac
93	[[ -f $job_to_send ]] && rm $job_to_send
94	printf "\n\n+++ SUBJOB killed \n\n"
95	fi' exit
96
97
98	# BEI TERMINAL-BREAK:
99	trap '[[ -f $job_to_send ]] && rm $job_to_send
100	printf "\n\n+++ SUBJOB killed \n\n"
101	exit
102	' 2
103
104
105
106
107	# LOKALEN HOSTNAMEN FESTSTELLEN
108	local_host=$(hostname)
109
110
111
112	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
113	# UEBERHAUPT ZULAESSIG IST
114	# Note: One of the entries for "lck" or "lckordi" always has to be
115	# comment out, because the hostname (node*) is same for both machines
116	case $local_host in
117	(atmos) local_addres=172.20.25.35; local_host=lcide;;
118	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
119	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
120	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
121	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
122	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
123	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
124	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
125	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
126	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
127	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
128	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
129	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
130	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
131	(cs*) local_addres=136.172.44.131; local_host=nech;;
132	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
133	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
134	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
135	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
136	(node*) local_addres=165.132.26.61 local_host=lck;;
137	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
138	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
139	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
140	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
141	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
142	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
143	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
144	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
145	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
146	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
147	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
148	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
149	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
150	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
151	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
152	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
153	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
154	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
155	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
156	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
157	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
158	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
159	(meller) local_addres=134.106.74.155; local_host=lcfor;;
160	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
161	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
162	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
163	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
164	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
165	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
166	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
167	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
168	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
169	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
170	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
171	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
172	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
173	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
174	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
175	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
176	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
177	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
178	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
179	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
180	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
181	(*) printf "\n +++ \"$local_host\" unknown";
182	printf "\n please inform S. Raasch!";
183	locat=parameter; exit;;
184	esac
185
186
187
188	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
189	remote_host=$local_host
190
191
192
193
194	# PROZEDUROPTIONEN EINLESEN
195	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
196	do
197	case $option in
198	(c) job_catalog=$OPTARG;;
199	(d) delete_dayfile=true;;
200	(D) no_submit=true;;
201	(e) email_notification=$OPTARG;;
202	(g) group_number=$OPTARG;;
203	(h) remote_host=$OPTARG;;
204	(m) memory=$OPTARG;;
205	(n) job_name=$OPTARG;;
206	(N) node_usage=$OPTARG;;
207	(O) threads_per_task=$OPTARG;;
208	(P) scp_port=$OPTARG;;
209	(q) no_default_queue=$OPTARG;;
210	(t) cputime=$OPTARG;;
211	(T) tasks_per_node=$OPTARG;;
212	(u) remote_user=$OPTARG;;
213	(v) verify=false;;
214	(X) numprocs=$OPTARG;;
215	(\?) printf "\n +++ Option $OPTARG unknown \n";
216	locat=option; exit;;
217	esac
218	done
219
220
221	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
222	shift OPTIND-1; file_to_send=$1
223
224
225	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
226	if [ "$1" = "?" ]
227	then
228	(printf "\n *** subjob can be called as follows:\n"
229	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
230	printf "\n Description of available options:\n"
231	printf "\n Option Description Default-Value"
232	printf "\n -c job-input- and output-catalog ~/job_queue"
233	printf "\n -d no job-protocol will be created ---"
234	printf "\n -D only the job-file will be created ---"
235	printf "\n -h execution host, available hosts: $remote_host"
236	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
237	printf "\n lckiaps, lctit, nech, necriam, unics"
238	printf "\n -m memory demand per process in MByte ---"
239	printf "\n -n jobname <jobdatei>"
240	printf "\n -O threads per task (for OpenMP usage) 1"
241	printf "\n -P ssh/scp port default port"
242	printf "\n -q job-queue to be used default"
243	printf "\n -t allowed cpu-time in seconds ---"
244	printf "\n -T tasks per node (on parallel hosts) ---"
245	printf "\n -u username on execution host from .netrc"
246	printf "\n -v no prompt for confirmation ---"
247	printf "\n -X # of processors (on parallel hosts) 1"
248	printf "\n "
249	printf "\n The only possible positional parameter is <jobfile>:"
250	printf "\n The complete NQS-job must be provided here."
251	printf "\n <jobfile>=? creates this outline\n\n") \| more
252	exit
253	fi
254
255
256
257	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
258	if [[ "$file_to_send" = "" ]]
259	then
260	printf "\n +++ job-file missing"
261	locat=parameter; exit
262	else
263	if [[ -f $file_to_send ]]
264	then
265	true
266	else
267	printf "\n +++ job-file: "
268	printf "\n $file_to_send"
269	printf "\n does not exist"
270	locat=parameter; exit
271	fi
272	fi
273
274
275
276	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
277	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
278	if [[ $job_name = none ]]
279	then
280	job_name=$file_to_send
281	fi
282	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
283	then
284	printf "\n +++ job-file name: "
285	printf "\n $job_name"
286	printf "\n must not contain \"/\"-characters"
287	locat=parameter; exit
288	fi
289
290
291
292
293	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
294	# ODER WENN HOST NICHT ANGEGEBEN WURDE
295	if [[ $remote_host = none ]]
296	then
297	printf "\n +++ host missing"
298	locat=option; exit
299	else
300	case $remote_host in
301	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
302	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
303	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
304	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
305	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
306	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
307	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
308	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
309	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
310	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
311	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
312	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
313	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
314	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
315	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
316	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
317	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
318	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
319	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
320	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
321	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
322	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
323	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
324	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
325	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
326	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
327	locat=parameter; exit;;
328	esac
329	fi
330
331
332	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
333	if [[ $no_default_queue != none ]]
334	then
335	error=false
336	ndq=$no_default_queue
337	case $remote_host in
338	(ibm) case $ndq in
339	(p690_express\|p690_standard\|p690_long) error=false;;
340	(*) error=true;;
341	esac;;
342	(ibmh) case $ndq in
343	(no_class) error=false;;
344	(*) error=true;;
345	esac;;
346	(ibmkisti) case $ndq in
347	(class.32plus\|class.1-2\|class.2-32) error=false;;
348	(*) error=true;;
349	esac;;
350	(ibmku) case $ndq in
351	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
352	(*) error=true;;
353	esac;;
354	(ibms) case $ndq in
355	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
356	(*) error=true;;
357	esac;;
358	(ibmy) case $ndq in
359	(parallel) error=false;;
360	(*) error=true;;
361	esac;;
362	(lcflow) case $ndq in
363	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
364	(*) error=true;;
365	esac;;
366	(lckiaps) case $ndq in
367	(express\|normal) error=false;;
368	(*) error=true;;
369	esac;;
370	(lckyoto) case $ndq in
371	(eh\|ph) error=false;;
372	(*) error=true;;
373	esac;;
374	(lckyuh) case $ndq in
375	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
376	(*) error=true;;
377	esac;;
378	(lckyut) case $ndq in
379	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
380	(*) error=true;;
381	esac;;
382	(lcsgib\|lcsgih) case $ndq in
383	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
384	(*) error=true;;
385	esac;;
386	(lctit) case $ndq in
387	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
388	(*) error=true;;
389	esac;;
390	(t3eb) case $ndq in
391	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
392	(*) error=true;;
393	esac;;
394	(necriam) case $ndq in
395	(SP\|SS\|P6) error=false;;
396	(*) error=true;;
397	esac;;
398	(t3eh) case $ndq in
399	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
400	(*) error=true;;
401	esac;;
402	(t3ej2\|t3ej5) case $ndq in
403	(low\|normal\|high) error=false;;
404	(*) error=true;;
405	esac;;
406	(t3es) case $ndq in
407	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
408	(*) error=true;;
409	esac;;
410	(unics) case $ndq in
411	(unics\|ht) error=false;;
412	(*) error=true;;
413	esac;;
414	esac
415	if [[ $error = true ]]
416	then
417	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
418	locat=parameter; exit
419	else
420	queue=$no_default_queue
421	fi
422	fi
423
424
425
426	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
427	# AUFTEILEN
428	done=false
429	while [[ $done = false ]]
430	do
431	if (( $cputime <= 0 ))
432	then
433	printf "\n +++ wrong cpu-time or cpu-time missing"
434	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
435	printf "\n >>> "
436	read cputime 1>/dev/null 2>&1
437	else
438	done=true
439	fi
440	done
441	if [[ $remote_host = nech ]]
442	then
443	if (( tasks_per_node != 0 ))
444	then
445	(( cputime = cputime * tasks_per_node ))
446	elif [[ $numprocs != 0 ]]
447	then
448	(( cputime = cputime * numprocs ))
449	fi
450	fi
451	(( stunden = cputime / 3600 ))
452	(( resttime = cputime - stunden * 3600 ))
453	(( minuten = resttime / 60 ))
454	(( sekunden = resttime - minuten * 60 ))
455	timestring=${stunden}:${minuten}:${sekunden}
456
457
458
459	# PRUEFEN DER KERNSPEICHERANFORDERUNG
460	done=false
461	while [[ $done = false ]]
462	do
463	if (( memory <= 0 ))
464	then
465	printf "\n +++ wrong memory demand or memory demand missing"
466	printf "\n >>> Please type memory in MByte per process as INTEGER:"
467	printf "\n >>> "
468	read memory 1>/dev/null 2>&1
469	else
470	done=true
471	fi
472	done
473
474	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
475	then
476	if (( tasks_per_node != 0 ))
477	then
478	(( Memory = memory * tasks_per_node / 1000 ))
479	elif [[ $numprocs != 0 ]]
480	then
481	(( Memory = memory * numprocs / 1000 ))
482	else
483	(( Memory = memory / 1000 ))
484	fi
485	elif [[ $remote_host = lctit ]]
486	then
487	(( Memory = memory * tasks_per_node / 1000 ))
488	fi
489
490
491	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
492	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
493	then
494	(( memory = memory * threads_per_task ))
495	fi
496
497
498	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
499	if (( tasks_per_node != 0 ))
500	then
501	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
502	fi
503
504
505	# Calculate number of processes per node
506	(( processes_per_node = tasks_per_node * threads_per_task ))
507
508
509	# Calculate number of MPI tasks
510	(( mpi_tasks = numprocs / threads_per_task ))
511
512
513	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
514	if [[ "$scp_port" != "" ]]
515	then
516	PORTOPT="-P $scp_port"
517	SSH_PORTOPT="-p $scp_port"
518	fi
519
520
521	# HEADER-AUSGABE
522	if [[ $verify = true ]]
523	then
524	printf "\n\n"
525	printf "#--------------------------------------------------------------# \n"
526	spalte1=SUBJOB;spalte2=$(date)
527	printf "\| $spalte1$spalte2 \| \n"
528	printf "\| \| \n"
529	printf "\| values of parameters/options: \| \n"
530	spalte1=local_host$punkte; spalte2=$punkte$local_host
531	printf "\| $spalte1$spalte2 \| \n"
532	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
533	printf "\| $spalte1$spalte2 \| \n"
534	spalte1=queue$punkte; spalte2=$punkte$queue
535	printf "\| $spalte1$spalte2 \| \n"
536	spalte1=memory$punkte; spalte2="$punkte$memory mb"
537	printf "\| $spalte1$spalte2 \| \n"
538	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
539	printf "\| $spalte1$spalte2 \| \n"
540	spalte1=job_name$punkte; spalte2="$punkte$job_name"
541	printf "\| $spalte1$spalte2 \| \n"
542	printf "#--------------------------------------------------------------# \n\n"
543
544
545	# KONTROLLABFRAGE, OB ALLES O.K.
546	antwort="dummy"
547	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
548	do
549	read antwort?" >>> continue (y/n) ? "
550	done
551	if [[ $antwort = n \|\| $antwort = N ]]
552	then
553	locat=verify; exit
554	fi
555	printf "\n"
556	fi
557
558
559
560	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
561	kennung=$RANDOM
562	job_on_remhost=${job_name}_${kennung}_$local_host
563	job_to_send=job_to_send_$kennung
564	if [[ $delete_dayfile = false ]]
565	then
566	remote_dayfile=${local_host}_${job_name}_result_$kennung
567	local_dayfile=${remote_host}_${job_name}
568	else
569	remote_dayfile=/dev/null
570	fi
571
572
573
574	# Generate the batch job scripts (qsub/msub/LoadLeveler)
575	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
576	then
577
578	# General LoadLeveler settings
579	execute_in_shell="#!/bin/ksh"
580	use_shell="# @ shell = /bin/ksh"
581	consumable_memory="ConsumableMemory($memory mb)"
582	class="# @ class = $queue"
583	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
584	network_to_use="# @ network.mpi = sn_all,shared,us"
585	data_limit="# @ data_limit = 1.76gb"
586	image_size="# @ image_size = 50"
587	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
588
589	if [[ $email_notification = none ]]
590	then
591	notify_user=""
592	else
593	notify_user="# @ notify_user = $email_notification"
594	if [[ $delete_dayfile = true ]]
595	then
596	notification='# @ notification = never'
597	fi
598	fi
599
600	if [[ $remote_host = ibmh ]]
601	then
602	data_limit=""
603	network_to_use=""
604	class=""
605	environment=""
606	rset="# @ rset = RSET_MCM_AFFINITY"
607	task_affinity="# @ task_affinity = core(1)"
608	elif [[ $remote_host = ibmkisti ]]
609	then
610	network_to_use="# @ network.MPI = sn_all,shared,US"
611	wall_clock_limit="# @ wall_clock_limit = $timestring"
612	if [[ $threads_per_task = 1 ]]
613	then
614	rset="# @ rset = RSET_MCM_AFFINITY"
615	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
616	fi
617	environment=""
618	use_shell=""
619	data_limit=""
620	image_size=""
621	elif [[ $remote_host = ibmku ]]
622	then
623	execute_in_shell="#!/usr/bin/ksh"
624	use_shell="# @ shell = /usr/bin/ksh"
625	consumable_memory=""
626	environment=""
627	network_to_use="# @ network.mpi = sn_all,shared,us"
628	data_limit=""
629	image_size=""
630	elif [[ $remote_host = ibms ]]
631	then
632	network_to_use="# @ network.mpi = csss,shared,us"
633	elif [[ $remote_host = ibmy ]]
634	then
635	consumable_memory=""
636	network_to_use=""
637	fi
638
639	cat > $job_to_send << %%END%%
640	$execute_in_shell
641	$use_shell
642
643	# @ job_type = parallel
644	# @ job_name = $job_name
645	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
646	# @ output = $remote_dayfile
647	# @ error = $remote_dayfile
648	$wall_clock_limit
649	$image_size
650	$class
651	$environment
652	$network_to_use
653	$data_limit
654	$rset
655	$mcm_affinity_options
656	$task_affinity
657	$notification
658	$notify_user
659
660	%%END%%
661
662	if (( nodes > 0 ))
663	then
664
665	if [[ $remote_host != ibmkisti ]]
666	then
667
668	cat >> $job_to_send << %%END%%
669	# @ node = $nodes
670	# @ tasks_per_node = $processes_per_node
671	# @ node_usage = $node_usage
672	# @ queue
673
674	%%END%%
675
676	else
677
678	cat >> $job_to_send << %%END%%
679	# @ total_tasks = $mpi_tasks
680	# @ blocking = unlimited
681	# @ queue
682
683	%%END%%
684
685	fi
686
687	else
688
689	if [[ $remote_host != ibmy ]]
690	then
691
692	cat >> $job_to_send << %%END%%
693	# @ blocking = unlimited
694	# @ total_tasks = $numprocs
695	# @ node_usage = $node_usage
696	# @ queue
697
698	%%END%%
699
700	else
701
702	cat >> $job_to_send << %%END%%
703	# @ node = 1
704	# @ total_tasks = $numprocs
705	# @ queue
706
707	%%END%%
708
709	fi
710
711	fi
712
713	# workaround because of silly job filter on ibmkisti
714	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
715	then
716	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
717	fi
718
719	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
720	then
721
722	cat > $job_to_send << %%END%%
723	#!/bin/ksh
724
725	# @ job_type = serial
726	# @ node_usage = $node_usage
727	# @ job_name = palm
728	# @ wall_clock_limit = ${timestring},$timestring
729	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
730	# @ output = $remote_dayfile
731	# @ error = $remote_dayfile
732	$class
733	$notification
734
735	# @ queue
736
737	%%END%%
738
739	elif [[ $remote_host = lcfimm ]]
740	then
741
742	if [[ $numprocs != 0 ]]
743	then
744	cat > $job_to_send << %%END%%
745	#!/bin/ksh
746	#PBS -N $job_name
747	#PBS -A $project_account
748	#PBS -l walltime=$timestring
749	#PBS -l nodes=${nodes}:ppn=$processes_per_node
750	#PBS -l pmem=${memory}mb
751	#PBS -m abe
752	#PBS -o $remote_dayfile
753	#PBS -j oe
754	mpd &
755
756	%%END%%
757
758	else
759	cat > $job_to_send << %%END%%
760	#!/bin/ksh
761	#PBS -N $job_name
762	#PBS -A $project_account
763	#PBS -l walltime=$timestring
764	#PBS -l ncpus=1
765	#PBS -l pmem=${memory}mb
766	#PBS -m abe
767	#PBS -o $remote_dayfile
768	#PBS -j oe
769
770	%%END%%
771
772	fi
773
774	elif [[ $remote_host = lcflow ]]
775	then
776	if [ $memory -gt 1900 ]; then
777	use_himem=""
778	else
779	use_himem="#"
780	fi
781	if [[ $numprocs != 0 ]]
782	then
783	pe_set="#$ -pe impi $numprocs"
784	else
785	pe_set="#$ -pe impi 1"
786	fi
787	if [[ $queue = default ]]
788	then
789	queue_set=""
790	else
791	queue_set="#$ -q $queue"
792	fi
793	[[ "$disc_space" = "" ]] && disc_space=50
794
795	cat > $job_to_send << %%END%%
796	#!/bin/bash
797	#$ -S /bin/bash
798	#$ -N $job_name
799	#$ -cwd
800	#$ -l h_rt=$timestring
801	#$ -l h_vmem=${memory}M
802	#$ -o $remote_dayfile
803	#$ -j y
804	$pe_set
805	#$ -R y
806	${use_himem}#$ -l highmem=true
807	#$ -l h_fsize=${disc_space}G
808	$queue_set
809
810	%%END%%
811
812	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
813	then
814
815	if [[ $numprocs != 0 ]]
816	then
817	cat > $job_to_send << %%END%%
818	#!/bin/ksh
819	#PBS -N $job_name
820	#PBS -l walltime=$timestring
821	#PBS -l ncpus=$numprocs
822	#PBS -l pmem=${memory}mb
823	#PBS -o $remote_dayfile
824	#PBS -l nodes=$nodes:ppn=${processes_per_node}
825	#PBS -j oe
826
827	mpd &
828
829	%%END%%
830
831	else
832	cat > $job_to_send << %%END%%
833	#!/bin/ksh
834	#PBS -N $job_name
835	#PBS -l walltime=$timestring
836	#PBS -l ncpus=1
837	#PBS -l pmem=${memory}mb
838	#PBS -o $remote_dayfile
839	#PBS -j oe
840
841	%%END%%
842
843	fi
844
845	elif [[ $remote_host = lckiaps ]]
846	then
847
848	if [[ $numprocs != 0 ]]
849	then
850	cat > $job_to_send << %%END%%
851	#!/bin/ksh
852	#PBS -N $job_name
853	#PBS -l walltime=$timestring
854	#PBS -l select=1:ncpus=$numprocs
855	#PBS -l pmem=${memory}mb
856	#PBS -q $queue
857	#PBS -o $remote_dayfile
858	#PBS -j oe
859	#PBS -V
860
861	%%END%%
862
863	else
864	cat > $job_to_send << %%END%%
865	#!/bin/ksh
866	#PBS -N $job_name
867	#PBS -l walltime=$timestring
868	#PBS -l ncpus=1
869	#PBS -l pmem=${memory}mb
870	#PBS -o $remote_dayfile
871	#PBS -j oe
872
873	%%END%%
874
875	fi
876
877	elif [[ $remote_host = lcyon ]]
878	then
879
880	if [[ $numprocs != 0 ]]
881	then
882	cat > $job_to_send << %%END%%
883	#!/bin/ksh
884	#PBS -N $job_name
885	#PBS -l walltime=$timestring
886	#PBS -l ncpus=$numprocs
887	#PBS -l pmem=${memory}mb
888	#PBS -o $remote_dayfile
889	#PBS -j oe
890
891	%%END%%
892
893	else
894	cat > $job_to_send << %%END%%
895	#!/bin/ksh
896	#PBS -N $job_name
897	#PBS -l walltime=$timestring
898	#PBS -l ncpus=1
899	#PBS -l pmem=${memory}mb
900	#PBS -o $remote_dayfile
901	#PBS -j oe
902
903	%%END%%
904
905	fi
906
907	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
908	then
909
910	if [[ "$sgi_feature" != "" ]]
911	then
912	feature_directive="#PBS -l feature=$sgi_feature"
913	else
914	feature_directive=""
915	fi
916
917	if [[ $queue = dataq \|\| $queue = permq ]]
918	then
919	feature_directive="#PBS -l feature=data"
920	fi
921
922	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
923	then
924	queue_directive="#PBS -q $queue"
925	else
926	queue_directive=""
927	fi
928
929	if [[ $email_notification = none ]]
930	then
931	email_directive=""
932	else
933	email_directive="#PBS -M $email_notification"
934	fi
935
936	if [[ $numprocs != 0 ]]
937	then
938	cat > $job_to_send << %%END%%
939	#!/bin/bash
940	#PBS -N $job_name
941	#PBS -l walltime=$timestring
942	#PBS -l nodes=$nodes:ppn=${processes_per_node}
943	#PBS -l naccesspolicy=$node_usage
944	#PBS -o $remote_dayfile
945	#PBS -j oe
946	$feature_directive
947	$queue_directive
948	$email_directive
949
950	eval \`/sw/swdist/bin/modulesinit\`
951	#. /usr/share/modules/init/bash
952	$init_cmds
953	$module_calls
954
955	echo ld_library_path=\$LD_LIBRARY_PATH
956
957	%%END%%
958
959	else
960	cat > $job_to_send << %%END%%
961	#PBS -S /bin/bash
962	#PBS -N $job_name
963	#PBS -l walltime=$timestring
964	#PBS -l ncpus=1
965	#PBS -o $remote_dayfile
966	#PBS -j oe
967	$queue_directive
968	$email_directive
969
970	eval \`/sw/swdist/bin/modulesinit\`
971	#. /usr/share/modules/init/bash
972	$init_cmds
973	$module_calls
974
975	%%END%%
976
977	fi
978
979	elif [[ $remote_host = lcxe6 ]]
980	then
981
982	if [[ $numprocs != 0 ]]
983	then
984	cat > $job_to_send << %%END%%
985	#!/bin/ksh
986	#PBS -S /bin/ksh
987	#PBS -N $job_name
988	#PBS -A $project_account
989	#PBS -j oe
990	#PBS -l walltime=$timestring
991	#PBS -l mppwidth=${numprocs}
992	#PBS -l mppnppn=${processes_per_node}
993	#PBS -m abe
994	#PBS -o $remote_dayfile
995	$email_directive
996
997	$init_cmds
998	$module_calls
999
1000	%%END%%
1001
1002	else
1003	cat > $job_to_send << %%END%%
1004	#!/bin/ksh
1005	#PBS -S /bin/ksh
1006	#PBS -N $job_name
1007	#PBS -A $project_account
1008	#PBS -j oe
1009	#PBS -l walltime=$timestring
1010	#PBS -l ncpus=1
1011	#PBS -l pmem=${memory}mb
1012	#PBS -m abe
1013	$email_directive
1014	#PBS -o $remote_dayfile
1015
1016	$init_cmds
1017	$module_calls
1018
1019	%%END%%
1020
1021	fi
1022
1023	elif [[ $remote_host = lckyoto ]]
1024	then
1025
1026	cat > $job_to_send << %%END%%
1027	#!/bin/ksh
1028	# @\$-o $remote_dayfile
1029	# @\$-eo -oi
1030	# @\$-lP 16
1031	# @\$-lp 1
1032	# @\$-lm 28gb -llm unlimited -ls unlimited
1033	# @\$-q $queue
1034	# @\$-Pvn abs_pack
1035	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1036	#. /thin/local/etc/setprofile/intel-11.0.sh
1037	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1038	. ~/.myprofile
1039	#. /home2/t/t51254/palm/current_version/myprofile
1040	#. /thin/apps/pgi/mpi.sh
1041	#
1042	env
1043	#
1044	set -x
1045
1046	%%END%%
1047
1048	elif [[ $remote_host = lcxt5m ]]
1049	then
1050
1051	if [[ $numprocs != 0 ]]
1052	then
1053	cat > $job_to_send << %%END%%
1054	#!/bin/ksh
1055	#PBS -S /bin/ksh
1056	#PBS -N $job_name
1057	#PBS -j oe
1058	#PBS -l walltime=$timestring
1059	#PBS -l mppwidth=${numprocs}
1060	#PBS -l mppnppn=${processes_per_node}
1061	#PBS -m abe
1062	#PBS -o $remote_dayfile
1063
1064	$init_cmds
1065	$module_calls
1066
1067	%%END%%
1068
1069	else
1070	cat > $job_to_send << %%END%%
1071	#!/bin/ksh
1072	#PBS -S /bin/ksh
1073	#PBS -N $job_name
1074	#PBS -j oe
1075	#PBS -l walltime=$timestring
1076	#PBS -l ncpus=1
1077	#PBS -l pmem=${memory}mb
1078	#PBS -m abe
1079	#PBS -o $remote_dayfile
1080
1081	$init_cmds
1082	$module_calls
1083
1084	%%END%%
1085
1086	fi
1087
1088	elif [[ $remote_host = lckyuh ]]
1089	then
1090	cat > $job_to_send << %%END%%
1091	#!/bin/bash
1092	#PJM -L "rscgrp=$queue"
1093	#PJM -L "node=$nodes"
1094	#PJM --mpi "proc=$numprocs"
1095	#PJM -L "elapse=$timestring"
1096	#PJM -o $remote_dayfile
1097	#PJM -j
1098	#PJM -X
1099	#PJM --no-stging
1100
1101	export LANG=en_US.UTF-8
1102	%%END%%
1103
1104	elif [[ $remote_host = lckyut ]]
1105	then
1106	cat > $job_to_send << %%END%%
1107	#!/bin/bash
1108	#PJM -L "rscgrp=$queue"
1109	#PJM -L "vnode=$numprocs"
1110	#PJM -L "vnode-core=1"
1111	#PJM -L "elapse=$timestring"
1112	#PJM --mpi proc=$numprocs
1113	#PJM -o $remote_dayfile
1114	#PJM -j
1115	#PJM -X
1116	#PJM --no-stging
1117
1118	export LANG=en_US.UTF-8
1119	%%END%%
1120
1121	elif [[ $remote_host = nech ]]
1122	then
1123
1124	if (( nodes > 1 ))
1125	then
1126	cat > $job_to_send << %%END%%
1127	#!/bin/ksh
1128	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1129	#PBS -l ${qsubmem}=${Memory}gb
1130	#PBS -b $nodes
1131	#PBS -o $remote_dayfile
1132	#PBS -N palm
1133	#PBS -j o
1134	#PBS -T mpisx
1135
1136	%%END%%
1137
1138	elif [[ $numprocs != 0 ]]
1139	then
1140	cat > $job_to_send << %%END%%
1141	#!/bin/ksh
1142	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1143	#PBS -l ${qsubmem}=${Memory}gb
1144	#PBS -o $remote_dayfile
1145	#PBS -N palm
1146	#PBS -j o
1147
1148	%%END%%
1149
1150	else
1151	cat > $job_to_send << %%END%%
1152	#!/bin/ksh
1153	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1154	#PBS -o $remote_dayfile
1155	#PBS -j o
1156
1157	%%END%%
1158
1159	fi
1160
1161	elif [[ $remote_host = necriam ]]
1162	then
1163
1164	if (( nodes > 1 ))
1165	then
1166	cat > $job_to_send << %%END%%
1167	#!/bin/ksh
1168	#PBS -b $nodes
1169	#PBS -o $remote_dayfile
1170	#PBS -N $job_name
1171	#PBS -j o
1172	#PBS -v MPIPROGINV=YES
1173
1174	%%END%%
1175
1176	elif [[ $numprocs != 0 ]]
1177	then
1178	cat > $job_to_send << %%END%%
1179	#!/bin/ksh
1180	#PBS -q ${queue}
1181	#PBS -o $remote_dayfile
1182	#PBS -N $job_name
1183	#PBS -j o
1184	#PBS -v MPIPROGINV=YES
1185
1186	%%END%%
1187
1188	else
1189	cat > $job_to_send << %%END%%
1190	#!/bin/ksh
1191	#PBS -o $remote_dayfile
1192	#PBS -j o
1193
1194	%%END%%
1195
1196	fi
1197
1198	elif [[ $remote_host = lctit ]]
1199	then
1200	cat > $job_to_send << %%END%%
1201	#!/bin/ksh
1202	$init_cmds
1203	$module_calls
1204
1205	%%END%%
1206
1207	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1208	if [[ $tasks_per_node != $processes_per_node ]]
1209	then
1210	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1211	else
1212	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1213	fi
1214
1215	else
1216
1217	cat > $job_to_send << %%END%%
1218	# @\$-q ${queue}
1219	# @\$-l${qsubtime} $timestring
1220	# @\$-l${qsubmem} ${memory}mb
1221	# @\$-o $remote_dayfile
1222	# @\$-eo
1223
1224	%%END%%
1225
1226	fi
1227
1228
1229	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1230	# BEI EXIT VERANLASSEN
1231	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1232	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1233	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1234	then
1235	echo "set +vx" >> $job_to_send
1236	echo "trap '" >> $job_to_send
1237	echo "set +vx" >> $job_to_send
1238	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1239	then
1240	if [[ $remote_host = ibmh ]]
1241	then
1242	return_queue=c1
1243	elif [[ $remote_host = ibmkisti ]]
1244	then
1245	return_queue=class.1-2
1246	elif [[ $remote_host = ibmku ]]
1247	then
1248	return_queue=sdbg2
1249	elif [[ $remote_host = ibms ]]
1250	then
1251	return_queue=p_normal
1252	elif [[ $remote_host = ibmy ]]
1253	then
1254	return_queue=serial
1255	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1256	then
1257	return_queue=serialq
1258	elif [[ $remote_host = necriam ]]
1259	then
1260	return_queue=SP
1261	elif [[ $remote_host = lckiaps ]]
1262	then
1263	return_queue=express
1264	elif [[ $remote_host = lckyuh ]]
1265	then
1266	return_queue=cx-single
1267	elif [[ $remote_host = lckyut ]]
1268	then
1269	return_queue=cx-single
1270	else
1271	return_queue=unknown
1272	fi
1273
1274	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1275	then
1276
1277	if [[ $remote_host = ibmku ]]
1278	then
1279	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1280	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1281	else
1282	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1283	fi
1284	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1285	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1286	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1287	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1288	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1289	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1290	if [[ $host != "ibmh" ]]
1291	then
1292	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1293	fi
1294	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1295	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1296
1297	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1298	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1299
1300	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1301	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1302	if [[ $remote_host = ibmku ]]
1303	then
1304	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1305	fi
1306	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1307
1308	elif [[ $remote_host = nech ]]
1309	then
1310	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1311	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1312	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1313	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1314	echo "#PBS -j o" >> $job_to_send
1315	echo " " >> $job_to_send
1316	echo "set -x" >> $job_to_send
1317	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1318	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1319	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1320	echo "%%END%%" >> $job_to_send
1321
1322	elif [[ $remote_host = necriam ]]
1323	then
1324	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1325	echo "#PBS -q $return_queue" >> $job_to_send
1326	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1327	echo "#PBS -j o" >> $job_to_send
1328	echo " " >> $job_to_send
1329	echo "set -x" >> $job_to_send
1330	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1331	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1332	echo "%%END%%" >> $job_to_send
1333
1334	elif [[ $remote_host = lckyuh ]]
1335	then
1336	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1337	echo "#!/bin/bash" >> $job_to_send
1338	echo "#PJM -L \"node=1\"" >> $job_to_send
1339	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1340	echo "#PJM --no-stging" >> $job_to_send
1341	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1342	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1343	echo "#PJM -j" >> $job_to_send
1344	echo " " >> $job_to_send
1345	echo "export LANG=en_US.UTF-8" >> $job_to_send
1346	echo "set -x" >> $job_to_send
1347	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1348	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1349	echo "%%END%%" >> $job_to_send
1350
1351	elif [[ $remote_host = lckyut ]]
1352	then
1353	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1354	echo "#!/bin/bash" >> $job_to_send
1355	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1356	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1357	echo "#PJM --no-stging" >> $job_to_send
1358	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1359	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1360	echo "#PJM -j" >> $job_to_send
1361	echo " " >> $job_to_send
1362	echo "export LANG=en_US.UTF-8" >> $job_to_send
1363	echo "set -x" >> $job_to_send
1364	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1365	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1366	echo "%%END%%" >> $job_to_send
1367
1368	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1369	then
1370	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1371	echo "#!/bin/bash" >> $job_to_send
1372	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1373	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1374	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1375	echo "#PBS -l feature=data" >> $job_to_send
1376	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1377	echo "#PBS -j oe" >> $job_to_send
1378	echo " " >> $job_to_send
1379	echo ". /usr/share/modules/init/bash" >> $job_to_send
1380	echo "set -x" >> $job_to_send
1381	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1382	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1383	echo "%%END%%" >> $job_to_send
1384
1385	elif [[ $remote_host = lcflow ]]
1386	then
1387	echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
1388	echo "#!/bin/bash" >> $job_to_send
1389	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1390	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1391	echo "SGEPREFIX -cwd" >> $job_to_send
1392	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1393	echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send
1394	echo "SGEPREFIX -j y" >> $job_to_send
1395	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
1396	echo " " >> $job_to_send
1397	echo "set -x" >> $job_to_send
1398	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1399	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1400	echo "" >> $job_to_send
1401	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1402	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1403	echo "rm -f scpjob.${kennung}" >> $job_to_send
1404	echo "%%END%%" >> $job_to_send
1405	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
1406	echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
1407
1408	else
1409
1410	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1411	echo "# @\\\$-q $return_queue" >> $job_to_send
1412	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1413	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1414	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1415	then
1416	echo "# @\$-l mpp_p=0" >> $job_to_send
1417	fi
1418	echo '# @\$-lF 10mb' >> $job_to_send
1419	# echo '# @\$-o /dev/null' >> $job_to_send
1420	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1421	echo '# @\\\$-eo' >> $job_to_send
1422	echo " " >> $job_to_send
1423	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1424	then
1425	echo "set +vx" >> $job_to_send
1426	echo ". .profile" >> $job_to_send
1427	fi
1428	echo "set -x" >> $job_to_send
1429	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1430	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1431	echo "%%END%%" >> $job_to_send
1432	fi
1433
1434	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1435	then
1436	echo "llsubmit scpjob.$kennung" >> $job_to_send
1437	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1438	then
1439	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1440	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1441	echo "msub scpjob.$kennung" >> $job_to_send
1442	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1443	then
1444	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1445	elif [[ $remote_host = t3es ]]
1446	then
1447	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1448	elif [[ $remote_host = lckiaps ]]
1449	then
1450	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1451	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1452	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1453	elif [[ $remote_host = lckyu* ]]
1454	then
1455	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1456	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1457	elif [[ $remote_host = lcflow ]]
1458	then
1459	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1460	echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
1461	else
1462	echo "$submcom scpjob.$kennung" >> $job_to_send
1463	fi
1464	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1465	then
1466	echo "rm scpjob.$kennung" >> $job_to_send
1467	fi
1468	if [[ $remote_host = nech ]]
1469	then
1470	echo "cd -" >> $job_to_send
1471	fi
1472	else
1473	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1474	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1475	fi
1476	echo "set -x" >> $job_to_send
1477	echo " ' exit" >> $job_to_send
1478	echo "set -x" >> $job_to_send
1479	fi
1480
1481
1482
1483	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1484	cat $file_to_send >> $job_to_send
1485
1486	if [[ $remote_host = ibm ]]
1487	then
1488	echo " " >> $job_to_send
1489	echo "exit" >> $job_to_send
1490	fi
1491
1492	# remove job file
1493	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1494	then
1495	echo " " >> $job_to_send
1496	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1497	fi
1498
1499
1500
1501	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1502	if [[ -z $remote_user ]]
1503	then
1504	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1505	then
1506	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1507	fi
1508	fi
1509
1510
1511
1512	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1513	if [[ $no_submit = false ]]
1514	then
1515	if [[ $remote_host != $local_host ]]
1516	then
1517	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1518	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1519	then
1520	job_catalog_save=$job_catalog
1521	job_catalog=job_queue
1522	elif [[ $remote_host = nech ]]
1523	then
1524	job_catalog_save=$job_catalog
1525	job_catalog=/hpf/b/${remote_user}/job_queue
1526	fi
1527	if [[ $remote_host = nech ]]
1528	then
1529	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1530	# TRANSFERIERT WERDEN
1531	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1532	else
1533	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1534	fi
1535	if [[ $? = 1 ]]
1536	then
1537	locat=scp; exit
1538	fi
1539	if [[ $remote_host = ibms ]]
1540	then
1541	job_catalog=$job_catalog_save
1542	fi
1543	[[ $verify = true ]] && printf "\n >>> finished\n"
1544	else
1545	eval job_catalog=$job_catalog
1546	cp $job_to_send ${job_catalog}/$job_on_remhost
1547	fi
1548
1549
1550
1551	# NQS- BZW. LOADLEVELER-JOB STARTEN
1552	if [[ $remote_host != $local_host ]]
1553	then
1554	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1555
1556	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1557	then
1558	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1559	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1560	elif [[ $remote_host = ibmku ]]
1561	then
1562	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1563	elif [[ $remote_host = lcflow ]]
1564	then
1565	ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1566	else
1567	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1568	fi
1569
1570	[[ $verify = true ]] && printf " >>> o.k.\n"
1571	else
1572	cd $job_catalog
1573	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1574	then
1575	eval $submcom $job_on_remhost
1576	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1577	then
1578	chmod u+x $job_on_remhost
1579	echo "$submcom $job_on_remhost"
1580	eval $submcom $job_on_remhost
1581	elif [[ $local_host = nech ]]
1582	then
1583	if [[ $queue = default ]]
1584	then
1585	eval $submcom $job_on_remhost
1586	else
1587	eval $submcom -q $queue $job_on_remhost
1588	fi
1589	else
1590	qsub $job_on_remhost
1591	fi
1592
1593	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1594	# only at the end of the job.
1595	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1596	then
1597	rm $job_on_remhost
1598	fi
1599	cd - > /dev/null
1600	fi
1601	fi
1602
1603
1604
1605	# ABSCHLUSSARBEITEN
1606
1607	if [[ $no_submit = false ]]
1608	then
1609	rm -f $job_to_send
1610	fi
1611	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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