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source: palm/trunk/SCRIPTS/subjob @ 2267

Last change on this file since 2267 was 2266, checked in by raasch, 7 years ago
bugfix for calculating cpu-time per gridpoint, nech related parts removed from subjob script
Property svn:keywords set to `Id Rev`
File size: 53.3 KB

Line
1	#!/bin/bash
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 2266 2017-06-09 09:27:21Z gronemeier $
30	# nech related parts removed
31	#
32	# 2257 2017-06-07 14:07:05Z witha
33	# adjustments for lceddy, removed lcflow-specific code
34	#
35	# 2188 2017-03-21 06:42:42Z raasch
36	#
37	# 2187 2017-03-21 06:41:25Z raasch
38	# adjustment of compute node names for lckyuh
39	#
40	# 2184 2017-03-21 04:31:22Z raasch
41	# bugfix: localhost renamed local_host
42	#
43	# 2148 2017-02-09 16:56:42Z scharf
44	# added kuma and gharbi to the list of known hosts
45	#
46	# 2134 2017-02-02 07:33:46Z raasch
47	# option -E added to msub commands on HLRN-III machines to allow output of more
48	# job informations in the job protocol files
49	#
50	# 1944 2016-06-15 06:29:00Z raasch
51	# adjustments for using HLRN ssh-keys
52	#
53	# 1940 2016-06-14 05:15:20Z raasch
54	# adjustments for lckiaps
55	#
56	# 1866 2016-04-15 06:50:59Z raasch
57	# adjusted for lcocean
58	#
59	# 1841 2016-04-07 19:14:06Z raasch
60	# script now running under bash
61	#
62	# 1701 2015-11-02 07:43:04Z maronga
63	# Bugfix: added missing init_cmds for lccrayh/lccrayb
64	#
65	# 1621 2015-07-17 11:39:33Z heinze
66	# adjustments for Mistral at DKRZ Hamburg (lcbullhh)
67	#
68	# 1575 2015-03-27 09:56:27Z raasch
69	# mpp2-queues added to lccrayh
70	#
71	# 1547 2015-01-29 15:09:12Z witha
72	# adjustments for ForWind computing cluster (lcflow)
73	#
74	# 1545 2015-01-29 06:52:23Z heinze
75	# local host name for blizzard further specified
76	#
77	# 1480 2014-10-17 14:41:49Z raasch
78	# adjustments for 2nd stage of HLRNIII
79	#
80	# 1468 2014-09-24 14:06:57Z maronga
81	# Typo removed (addres->address)
82	# Adjustments for lcxe6
83	#
84	# 1452 2014-08-22 09:41:06Z heinze
85	# local hosts for blizzard added
86	#
87	# 1450 2014-08-21 07:31:51Z heinze
88	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
89	#
90	# 1442 2014-07-28 07:09:10Z raasch
91	# HLRN-III (lccrayb/lccrayh) queues adjusted
92	#
93	# 1378 2014-04-28 06:04:58Z raasch
94	# -et option added for lctit
95	#
96	# 1350 2014-04-04 13:01:30Z maronga
97	# location of qsub updated for lcxe6
98	#
99	# 1289 2014-03-04 07:12:34Z raasch
100	# German comments translated to English
101	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
102	#
103	# 1279 2014-01-28 12:10:14Z raasch
104	# node calculation modified due to changes in mrun (tasks_per_node must not be
105	# an integral divisor of numprocs any more)
106	#
107	# 1274 2014-01-09 13:14:54Z heinze
108	# adjustments for lccrayh
109	#
110	# 1266 2013-12-11 12:07:34Z heinze
111	# further adjustments for lccrayb (use msub instead of qsub)
112	#
113	# 1264 2013-12-09 12:46:09Z fricke
114	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
115	#
116	# 1262 2013-12-09 10:57:20Z fricke
117	# further adjustments for lccrayb
118	#
119	# 1260 2013-12-04 12:48:04Z raasch
120	# jaboticaba admitted
121	#
122	# 1255 2013-11-07 14:43:35Z raasch
123	# further adjustments for lccrayb
124	#
125	# 1224 2013-09-16 07:27:23Z raasch
126	# first adjustments for lccrayb
127	#
128	# 1202 2013-07-10 16:22:07Z witha
129	# adjustments for Forwind cluster (lcflow)
130	#
131	# 1199 2013-07-05 14:52:22Z raasch
132	# adjustments for CSC Helsinki (lccrayf)
133	#
134	# use of cluster/express queue enabled (ibmh)
135	# vinessa added (imuk)
136	#
137	# 1103 2013-02-20 02:15:53Z raasch
138	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
139	# instead typeset -L/R),
140	# further adjustments for lckyuh
141	#
142	# 2013-02-10 01:47:43Z raasch
143	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
144	# and for Forwind cluster (lcflow)
145	#
146	# 1094 2013-02-03 01:52:12Z raasch
147	# new option -P for explicit setting of ssh/scp port,
148	# decalpha parts (yonsei) removed
149	#
150	# 2013-02-02 07:06:13Z raasch
151	# adjustments for Kyushu-University computing center (lckyut - tatara)
152	# old changelog messages removed
153	#
154	# 1046 2012-11-09 14:38:45Z maronga
155	# code put under GPL (PALM 3.9)
156	#
157	# 08/07/94 - Siggi - first version finished
158	# 29/06/94 - Siggi - script development started
159	#--------------------------------------------------------------------------------#
160	# subjob - script for automatic generation and submission of batch-job files
161	# for various batch queuing systems
162	#--------------------------------------------------------------------------------#
163
164
165	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
166	delete_dayfile=false
167	email_notification=none
168	group_number=none
169	locat=normal
170	no_default_queue=none
171	no_submit=false
172	job_catalog="~/job_queue"
173	job_name=none
174	local_user=$LOGNAME
175	node_usage=shared
176	numprocs=0
177	punkte="..........................................................."
178	submcom=qsub
179	queue=default
180	remote_host=none
181	remote_user=""
182	verify=true
183
184	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
185	typeset -i numprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
186
187
188
189	# ERROR HANDLING
190	# IN CASE OF EXIT:
191	trap 'if [[ $locat != normal ]]
192	then
193	case $locat in
194	(option) printf "\n --> available optios can be displayed"
195	printf " by typing:"
196	printf "\n \"subjob ?\" \n";;
197	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
198	(*) printf "\n +++ unknown error"
199	printf "\n please inform S. Raasch!\n"
200	esac
201	[[ -f $job_to_send ]] && rm $job_to_send
202	printf "\n\n+++ SUBJOB killed \n\n"
203	fi' exit
204
205
206	# IN CASE OF TERMINAL-BREAK:
207	trap '[[ -f $job_to_send ]] && rm $job_to_send
208	printf "\n\n+++ SUBJOB killed \n\n"
209	exit
210	' 2
211
212
213	# DETERMINE NAME OF LOCAL HOST
214	local_host=$(hostname)
215
216	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
217	# IS ADMITTED AT ALL)
218	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
219	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
220	case $local_host in
221	(ambiel-lx) local_address=134.106.74.48; local_host=lcfor;;
222	(atmos) local_address=172.20.25.35; local_host=lcide;;
223	(austru) local_address=130.75.105.128; local_host=lcmuk;;
224	(autan) local_address=130.75.105.57; local_host=lcmuk;;
225	(bora) local_address=130.75.105.103; local_host=lcmuk;;
226	(a0\|b0) local_address=133.5.4.33; local_host=lckyuh;;
227	(blizzard1\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.15; local_host=ibmh;;
228	(blizzard2\|p0\|p1\|p2\|p3\|p4\|p5\|p6\|p7\|p8\|p9) local_address=136.172.40.16; local_host=ibmh;;
229	(blogin\|bxc) local_address=130.73.233.1; local_host=lccrayb;;
230	(hlogin\|hxc) local_address=130.75.4.1; local_host=lccrayh;;
231	(breva) local_address=130.75.105.98; local_host=lcmuk;;
232	(buran) local_address=130.75.105.58; local_host=lcmuk;;
233	(caurus) local_address=130.75.105.19; local_host=lcmuk;;
234	(climate*) local_address=165.132.26.68; local_host=lcyon;;
235	(clogin*) local_address=86.50.166.21; local_host=lccrayf;;
236	(elephanta) local_address=130.75.105.6; local_host=lcmuk;;
237	(hpcl*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;;
238	(cfd*) local_address=eddy.hpc.uni-oldenburg.de; local_host=lceddy;;
239	(node*) local_address=165.132.26.61 local_host=lck;;
240	# (node*) local_address=210.219.61.8 local_host=lckordi;;
241	(gaia*) local_address=150.183.146.24; local_host=ibmkisti;;
242	(gharbi) local_address=130.75.105.47; local_host=lcmuk;;
243	(gallego) local_address=130.75.105.10; local_host=lcmuk;;
244	(gregale) local_address=130.75.105.109; local_host=lcmuk;;
245	(hababai) local_address=130.75.105.108; local_host=lcmuk;;
246	(hayaka*) local_address=133.5.4.33; local_host=lckyuh;;
247	(hexagon.bccs.uib.no) local_address=129.177.20.113; local_host=lcxe6;;
248	(hx*) local_address=133.3.51.11; local_host=lckyoto;;
249	(inferno) local_address=130.75.105.5; local_host=lcmuk;;
250	(irifi) local_address=130.75.105.104; local_host=lcmuk;;
251	(jaboticaba) local_address=150.163.25.181; local_host=lcbr;;
252	(sno) local_address=130.75.105.113; local_host=lcmuk;;
253	(kuma) local_address=130.75.105.115; local_host=lcmuk;;
254	(levanto) local_address=130.75.105.45; local_host=lcmuk;;
255	(login*) local_address=118.128.66.201; local_host=lckiaps;;
256	(maestro) local_address=130.75.105.2; local_host=lcmuk;;
257	(meller) local_address=134.106.74.155; local_host=lcfor;;
258	(meteo-login*) local_address=193.166.211.144;local_host=lcxt5m;;
259	(mlogin1\|m1) local_address=136.172.50.13; local_host=lcbullhh;;
260	(hexagon*) local_address=129.177.20.113; local_host=lcxe6;;
261	(nobel*) local_address=150.183.5.101; local_host=ibms;;
262	(ocean) local_address="ocean"; local_host=lcocean;;
263	(orkan) local_address=130.75.105.3; local_host=lcmuk;;
264	(ostria) local_address=130.75.105.106; local_host=lcmuk;;
265	(paesano) local_address=130.75.105.46; local_host=lcmuk;;
266	(pcj*) local_address=172.31.120.1; local_host=lckyut;;
267	(pingui) local_address=134.106.74.118; local_host=lcfor;;
268	(quanero) local_address=130.75.105.107; local_host=lcmuk;;
269	(rte*) local_address=133.5.185.60; local_host=lcrte;;
270	(schultzl-Latitude-E6540) local_address="schultzl-Latitude-E6540"; local_host=lcsch;;
271	(shiokaze-lx) local_address=134.106.74.123; local_host=lcfor;;
272	(sisu-login*) local_address=86.50.166.21; local_host=lccrayf;;
273	(solano) local_address=130.75.105.110; local_host=lcmuk;;
274	(sugoka*) local_address=172.31.120.1; local_host=lckyut;;
275	(tc*) local_address="ocean"; local_host=lcocean;;
276	(t2a*) local_address=10.1.6.165; local_host=lctit;;
277	(urban*) local_address=147.46.30.151 local_host=lcsb;;
278	(vinessa) local_address=130.75.105.112; local_host=lcmuk;;
279	(vorias) local_address=172.20.25.43; local_host=lcmuk;;
280	(*.cc.kyushu-u.ac.jp) local_address=133.5.4.129; local_host=ibmku;;
281	(*) printf "\n +++ \"$local_host\" unknown";
282	printf "\n please contact the PALM group at IMUK";
283	locat=parameter; exit;;
284	esac
285
286
287
288	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
289	remote_host=$local_host
290
291
292
293
294	# READ THE SHELLSCRIPT-OPTIONS
295	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
296	do
297	case $option in
298	(c) job_catalog=$OPTARG;;
299	(d) delete_dayfile=true;;
300	(D) no_submit=true;;
301	(e) email_notification=$OPTARG;;
302	(g) group_number=$OPTARG;;
303	(h) remote_host=$OPTARG;;
304	(m) memory=$OPTARG;;
305	(n) job_name=$OPTARG;;
306	(N) node_usage=$OPTARG;;
307	(O) threads_per_task=$OPTARG;;
308	(P) scp_port=$OPTARG;;
309	(q) no_default_queue=$OPTARG;;
310	(t) cputime=$OPTARG;;
311	(T) tasks_per_node=$OPTARG;;
312	(u) remote_user=$OPTARG;;
313	(v) verify=false;;
314	(X) numprocs=$OPTARG;;
315	(\?) printf "\n +++ Option $OPTARG unknown \n";
316	locat=option; exit;;
317	esac
318	done
319
320
321	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
322	(( to_shift = $OPTIND - 1 ))
323	shift $to_shift; file_to_send=$1
324
325
326	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
327	if [ "$1" = "?" ]
328	then
329	(printf "\n *** subjob can be called as follows:\n"
330	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
331	printf "\n Description of available options:\n"
332	printf "\n Option Description Default-Value"
333	printf "\n -c job-input- and output-catalog ~/job_queue"
334	printf "\n -d no job-protocol will be created ---"
335	printf "\n -D only the job-file will be created ---"
336	printf "\n -h execution host, available hosts: $remote_host"
337	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
338	printf "\n lckiaps, lctit"
339	printf "\n -m memory demand per process in MByte ---"
340	printf "\n -n jobname <jobdatei>"
341	printf "\n -O threads per task (for OpenMP usage) 1"
342	printf "\n -P ssh/scp port default port"
343	printf "\n -q job-queue to be used default"
344	printf "\n -t allowed cpu-time in seconds ---"
345	printf "\n -T tasks per node (on parallel hosts) ---"
346	printf "\n -u username on execution host from .netrc"
347	printf "\n -v no prompt for confirmation ---"
348	printf "\n -X # of processors (on parallel hosts) 1"
349	printf "\n "
350	printf "\n The only possible positional parameter is <jobfile>:"
351	printf "\n The complete NQS-job must be provided here."
352	printf "\n <jobfile>=? creates this outline\n\n") \| more
353	exit
354	fi
355
356
357
358	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
359	if [[ "$file_to_send" = "" ]]
360	then
361	printf "\n +++ job-file missing"
362	locat=parameter; exit
363	else
364	if [[ -f $file_to_send ]]
365	then
366	true
367	else
368	printf "\n +++ job-file: "
369	printf "\n $file_to_send"
370	printf "\n does not exist"
371	locat=parameter; exit
372	fi
373	fi
374
375
376
377	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
378	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
379	if [[ $job_name = none ]]
380	then
381	job_name=$file_to_send
382	fi
383	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
384	then
385	printf "\n +++ job-file name: "
386	printf "\n $job_name"
387	printf "\n must not contain \"/\"-characters"
388	locat=parameter; exit
389	fi
390
391
392
393
394	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
395	# OR IF NO HOST HAS BEEN GIVEN
396	if [[ $remote_host = none ]]
397	then
398	printf "\n +++ host missing"
399	locat=option; exit
400	else
401	case $remote_host in
402	(ibm) queue=p690_standard; remote_address=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
403	(ibmh) queue=cluster; remote_address=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
404	(ibmkisti) queue=class.32plus; remote_address=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
405	(ibmku) queue=s4; remote_address=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
406	(ibms) queue=p_normal; remote_address=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
407	(lcbullhh) queue=compute; remote_address=136.172.50.13; submcom=/usr/bin/sbatch;;
408	(lccrayb) queue=mpp1testq; remote_address=130.73.233.1; submcom="/opt/moab/default/bin/msub -E";;
409	(lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom="/opt/moab/default/bin/msub -E";;
410	(lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
411	(lceddy) remote_address=eddy.hpc.uni-oldenburg.de; submcom=sbatch;;
412	(lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
413	(lck) remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
414	(lckiaps) remote_address=118.128.66.201; submcom=/opt/pbs/default/bin/qsub;;
415	(lckordi) remote_address=210.219.61.8; submcom=/usr/torque/bin/qsub;;
416	(lckyuh) remote_address=133.5.4.33; submcom=/usr/bin/pjsub;;
417	(lckyut) remote_address=133.5.4.37; submcom=/usr/bin/pjsub;;
418	(lcocean) remote_address="ocean"; submcom=qsub;;
419	(lcsb) remote_address=147.46.30.151; submcom=/usr/torque/bin/qsub;;
420	(lctit) queue=S; remote_address=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
421	(lcxe6) remote_address=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
422	(lcxt5m) remote_address=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
423	(lcyon) remote_address=165.132.26.68; submcom=/usr/torque/bin/qsub;;
424	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
425	locat=parameter; exit;;
426	esac
427	fi
428
429
430	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
431	if [[ $no_default_queue != none ]]
432	then
433	error=false
434	ndq=$no_default_queue
435	case $remote_host in
436	(ibm) case $ndq in
437	(p690_express\|p690_standard\|p690_long) error=false;;
438	(*) error=true;;
439	esac;;
440	(ibmh) case $ndq in
441	(cluster\|express) error=false;;
442	(*) error=true;;
443	esac;;
444	(ibmkisti) case $ndq in
445	(class.32plus\|class.1-2\|class.2-32) error=false;;
446	(*) error=true;;
447	esac;;
448	(ibmku) case $ndq in
449	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
450	(*) error=true;;
451	esac;;
452	(ibms) case $ndq in
453	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
454	(*) error=true;;
455	esac;;
456	(lcbullhh) case $ndq in
457	(compute\|compute2\|shared) error=false;;
458	(*) error=true;;
459	esac;;
460	(lccrayb) case $ndq in
461	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
462	(*) error=true;;
463	esac;;
464	(lccrayh) case $ndq in
465	(dataq\|mpp1q\|mpp1testq\|mpp2q\|mpp2testq\|smp1q\|smp1testq\|specialm1q) error=false;;
466	(*) error=true;;
467	esac;;
468	(lccrayf) case $ndq in
469	(usup\|test*\|small\|large) error=false;;
470	(*) error=true;;
471	esac;;
472	(lceddy) case $ndq in
473	(eddy.p\|cfdh.p\|cfdl.p\|carl.p\|mpcs.p\|mpcl.p\|mpcb.p\|all_nodes.p) error=false;;
474	(*) error=true;;
475	esac;;
476	(lckiaps) case $ndq in
477	(express\|normal\|normal20\|quickq) error=false;;
478	(*) error=true;;
479	esac;;
480	(lckyoto) case $ndq in
481	(eh\|ph) error=false;;
482	(*) error=true;;
483	esac;;
484	(lckyuh) case $ndq in
485	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
486	(*) error=true;;
487	esac;;
488	(lckyut) case $ndq in
489	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
490	(*) error=true;;
491	esac;;
492	(lctit) case $ndq in
493	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
494	(*) error=true;;
495	esac;;
496	(t3eb) case $ndq in
497	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
498	(*) error=true;;
499	esac;;
500	(t3eh) case $ndq in
501	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
502	(*) error=true;;
503	esac;;
504	(t3ej2\|t3ej5) case $ndq in
505	(low\|normal\|high) error=false;;
506	(*) error=true;;
507	esac;;
508	(t3es) case $ndq in
509	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
510	(*) error=true;;
511	esac;;
512	esac
513	if [[ $error = true ]]
514	then
515	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
516	locat=parameter; exit
517	else
518	queue=$no_default_queue
519	fi
520	fi
521
522
523
524	# CHECK THE CPU-TIME
525	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
526	done=false
527	while [[ $done = false ]]
528	do
529	if (( $cputime <= 0 ))
530	then
531	printf "\n +++ wrong cpu-time or cpu-time missing"
532	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
533	printf "\n >>> "
534	read cputime 1>/dev/null 2>&1
535	else
536	done=true
537	fi
538	done
539	(( stunden = cputime / 3600 ))
540	(( resttime = cputime - stunden * 3600 ))
541	(( minuten = resttime / 60 ))
542	(( sekunden = resttime - minuten * 60 ))
543	timestring=${stunden}:${minuten}:${sekunden}
544
545
546
547	# CHECK THE MEMORY DEMAND
548	done=false
549	while [[ $done = false ]]
550	do
551	if (( memory <= 0 ))
552	then
553	printf "\n +++ wrong memory demand or memory demand missing"
554	printf "\n >>> Please type memory in MByte per process as INTEGER:"
555	printf "\n >>> "
556	read memory 1>/dev/null 2>&1
557	else
558	done=true
559	fi
560	done
561
562	if [[ $remote_host = lctit ]]
563	then
564	(( Memory = memory * tasks_per_node / 1000 ))
565	fi
566
567
568	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
569	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
570	then
571	(( memory = memory * threads_per_task ))
572	fi
573
574
575	# CALCULATE NUMBER OF REQUIRED NODES
576	if (( tasks_per_node != 0 ))
577	then
578	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
579	fi
580
581
582	# CALCULATE NUMBER OF PROCESSES PER NODE
583	(( processes_per_node = tasks_per_node * threads_per_task ))
584
585
586	# CALCULATE NUMBER OF MPI TASKS
587	(( mpi_tasks = numprocs / threads_per_task ))
588
589
590	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
591	if [[ "$scp_port" != "" ]]
592	then
593	PORTOPT="-P $scp_port"
594	SSH_PORTOPT="-p $scp_port"
595	fi
596
597
598	# HEADER-OUTPUT
599	if [[ $verify = true ]]
600	then
601	printf "\n\n"
602	printf "#--------------------------------------------------------------# \n"
603	spalte1=SUBJOB;spalte2=$(date)
604	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
605	printf "\| \| \n"
606	printf "\| values of parameters/options: \| \n"
607	spalte1=$(echo local_host$punkte \| cut -c-20)
608	spalte2=$punkte$local_host
609	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
610	spalte1=$(echo remote_host$punkte \| cut -c-20)
611	spalte2=$punkte$remote_host
612	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
613	spalte1=$(echo queue$punkte \| cut -c-20)
614	spalte2=$punkte$queue
615	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
616	spalte1=$(echo memory$punkte \| cut -c-20)
617	spalte2="$punkte$memory mb"
618	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
619	spalte1=$(echo cputime$punkte \| cut -c-20)
620	spalte2="$punkte$cputime sec"
621	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
622	spalte1=$(echo job_name$punkte \| cut -c-20)
623	spalte2="$punkte$job_name"
624	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
625	printf "#--------------------------------------------------------------# \n\n"
626
627
628	# QUERY CHECK
629	antwort="dummy"
630	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
631	do
632	read antwort?" >>> continue (y/n) ? "
633	done
634	if [[ $antwort = n \|\| $antwort = N ]]
635	then
636	locat=verify; exit
637	fi
638	printf "\n"
639	fi
640
641	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
642	identifier=$RANDOM
643	job_on_remhost=${job_name}_${identifier}_$local_host
644	job_to_send=job_to_send_$identifier
645	if [[ $delete_dayfile = false ]]
646	then
647	remote_dayfile=${local_host}_${job_name}_result_$identifier
648	local_dayfile=${remote_host}_${job_name}
649	else
650	remote_dayfile=/dev/null
651	fi
652
653
654	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
655	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
656	then
657
658	# GENERAL LOADLEVELER SETTINGS
659	execute_in_shell="#!/bin/ksh"
660	use_shell="# @ shell = /bin/ksh"
661	consumable_memory="ConsumableMemory($memory mb)"
662	class="# @ class = $queue"
663	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
664	network_to_use="# @ network.mpi = sn_all,shared,us"
665	data_limit="# @ data_limit = 1.76gb"
666	image_size="# @ image_size = 50"
667	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
668
669	if [[ $email_notification = none ]]
670	then
671	notify_user=""
672	else
673	notify_user="# @ notify_user = $email_notification"
674	if [[ $delete_dayfile = true ]]
675	then
676	notification='# @ notification = never'
677	fi
678	fi
679
680	if [[ $remote_host = ibmh ]]
681	then
682	data_limit=""
683	network_to_use=""
684	class="# @ class = $queue"
685	environment=""
686	rset="# @ rset = RSET_MCM_AFFINITY"
687	task_affinity="# @ task_affinity = core(1)"
688	elif [[ $remote_host = ibmkisti ]]
689	then
690	network_to_use="# @ network.MPI = sn_all,shared,US"
691	wall_clock_limit="# @ wall_clock_limit = $timestring"
692	if [[ $threads_per_task = 1 ]]
693	then
694	rset="# @ rset = RSET_MCM_AFFINITY"
695	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
696	fi
697	environment=""
698	use_shell=""
699	data_limit=""
700	image_size=""
701	elif [[ $remote_host = ibmku ]]
702	then
703	execute_in_shell="#!/usr/bin/ksh"
704	use_shell="# @ shell = /usr/bin/ksh"
705	consumable_memory=""
706	environment=""
707	network_to_use="# @ network.mpi = sn_all,shared,us"
708	data_limit=""
709	image_size=""
710	elif [[ $remote_host = ibms ]]
711	then
712	network_to_use="# @ network.mpi = csss,shared,us"
713	fi
714
715	cat > $job_to_send << %%END%%
716	$execute_in_shell
717	$use_shell
718
719	# @ job_type = parallel
720	# @ job_name = $job_name
721	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
722	# @ output = $remote_dayfile
723	# @ error = $remote_dayfile
724	$wall_clock_limit
725	$image_size
726	$class
727	$environment
728	$network_to_use
729	$data_limit
730	$rset
731	$mcm_affinity_options
732	$task_affinity
733	$notification
734	$notify_user
735
736	%%END%%
737
738	if (( nodes > 0 ))
739	then
740
741	if [[ $remote_host != ibmkisti ]]
742	then
743
744	cat >> $job_to_send << %%END%%
745	# @ node = $nodes
746	# @ tasks_per_node = $processes_per_node
747	# @ node_usage = $node_usage
748	# @ queue
749
750	%%END%%
751
752	else
753
754	cat >> $job_to_send << %%END%%
755	# @ total_tasks = $mpi_tasks
756	# @ blocking = unlimited
757	# @ queue
758
759	%%END%%
760
761	fi
762
763	else
764
765	cat >> $job_to_send << %%END%%
766	# @ blocking = unlimited
767	# @ total_tasks = $numprocs
768	# @ node_usage = $node_usage
769	# @ queue
770
771	%%END%%
772
773	fi
774
775	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
776	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
777	then
778	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
779	fi
780
781	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
782	then
783
784	cat > $job_to_send << %%END%%
785	#!/bin/ksh
786
787	# @ job_type = serial
788	# @ node_usage = $node_usage
789	# @ job_name = palm
790	# @ wall_clock_limit = ${timestring},$timestring
791	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
792	# @ output = $remote_dayfile
793	# @ error = $remote_dayfile
794	$class
795	$notification
796
797	# @ queue
798
799	%%END%%
800
801	elif [[ $remote_host = lcbullhh ]]
802	then
803	if [[ $numprocs != 0 ]]
804	then
805	cat > $job_to_send << %%END%%
806	#!/bin/bash -l
807	#SBATCH -J $job_name
808	#SBATCH -t $timestring
809	#SBATCH -N $nodes
810	#SBATCH --ntasks-per-node=$processes_per_node
811	#SBATCH -p $queue
812	#SBATCH -o $remote_dayfile
813	#SBATCH -e $remote_dayfile
814	#SBATCH -A $project_account
815
816	$init_cmds
817	$module_calls
818
819	%%END%%
820
821	else
822	cat > $job_to_send << %%END%%
823	#!/bin/bash -l
824	#SBATCH -J $job_name
825	#SBATCH -t $timestring
826	#SBATCH -l ncpus=1
827	#SBATCH -l pmem=${memory}mb
828	#SBATCH -m abe
829	#SBATCH -o $remote_dayfile
830	#SBATCH -e $remote_dayfile
831	#SBATCH -A $project_account
832
833	$init_cmds
834	$module_calls
835
836	%%END%%
837
838	fi
839
840	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
841	then
842
843	if [[ "$feature" != "" ]]
844	then
845	featuredir="#PBS -l feature=$feature"
846	fi
847
848	if [[ $numprocs != 0 ]]
849	then
850	cat > $job_to_send << %%END%%
851	#!/bin/bash
852	#PBS -N $job_name
853	#PBS -l walltime=$timestring
854	#PBS -l nodes=$nodes:ppn=$processes_per_node
855	#PBS -o $remote_dayfile
856	#PBS -j oe
857	#PBS -q $queue
858	$featuredir
859
860	$init_cmds
861	$module_calls
862
863	%%END%%
864
865	else
866
867	continue
868
869	fi
870
871	elif [[ $remote_host = lccrayf ]]
872	then
873
874	if [[ $numprocs != 0 ]]
875	then
876	cat > $job_to_send << %%END%%
877	#!/bin/bash -l
878	#SBATCH -J $job_name
879	#SBATCH -t $timestring
880	#SBATCH -N $nodes
881	#SBATCH --ntasks-per-node=$processes_per_node
882	#SBATCH -p $queue
883	#SBATCH -o $remote_dayfile
884	#SBATCH -e $remote_dayfile
885
886	$init_cmds
887	$module_calls
888
889	%%END%%
890
891	else
892	cat > $job_to_send << %%END%%
893	#!/bin/bash -l
894	#SBATCH -J $job_name
895	#SBATCH -t $timestring
896	#SBATCH -l ncpus=1
897	#SBATCH -l pmem=${memory}mb
898	#SBATCH -m abe
899	#SBATCH -o $remote_dayfile
900	#SBATCH -e $remote_dayfile
901
902	$init_cmds
903	$module_calls
904
905	%%END%%
906
907	fi
908
909
910
911	elif [[ $remote_host = lceddy ]]
912	then
913	cat > $job_to_send << %%END%%
914	#!/bin/bash
915	#SBATCH -J $job_name
916	#SBATCH -t $timestring
917	#SBATCH -n $numprocs
918	#SBATCH -N $nodes
919	#SBATCH --cpus-per-task 1
920	#SBATCH -p $queue
921	#SBATCH -o $remote_dayfile
922	#SBATCH -e $remote_dayfile
923	#SBATCH --mem-per-cpu $memory
924	#SBATCH --exclusive
925
926	module load PALMDependencies/.gcc
927
928	$init_cmds
929	$module_calls
930
931	%%END%%
932
933	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
934	then
935
936	if [[ $numprocs != 0 ]]
937	then
938	cat > $job_to_send << %%END%%
939	#!/bin/ksh
940	#PBS -N $job_name
941	#PBS -l walltime=$timestring
942	#PBS -l ncpus=$numprocs
943	#PBS -l pmem=${memory}mb
944	#PBS -o $remote_dayfile
945	#PBS -l nodes=$nodes:ppn=${processes_per_node}
946	#PBS -j oe
947
948	mpd &
949
950	%%END%%
951
952	else
953	cat > $job_to_send << %%END%%
954	#!/bin/ksh
955	#PBS -N $job_name
956	#PBS -l walltime=$timestring
957	#PBS -l ncpus=1
958	#PBS -l pmem=${memory}mb
959	#PBS -o $remote_dayfile
960	#PBS -j oe
961
962	%%END%%
963
964	fi
965
966	elif [[ $remote_host = lckiaps ]]
967	then
968
969	if [[ $numprocs != 0 ]]
970	then
971	cat > $job_to_send << %%END%%
972	#!/bin/bash
973	#PBS -N $job_name
974	#PBS -l walltime=$timestring
975	#PBS -l select=1:ncpus=$numprocs
976	#PBS -l pmem=${memory}mb
977	#PBS -q $queue
978	#PBS -o $remote_dayfile
979	#PBS -j oe
980	#PBS -V
981
982	%%END%%
983
984	else
985	cat > $job_to_send << %%END%%
986	#!/bin/bash
987	#PBS -N $job_name
988	#PBS -l walltime=$timestring
989	#PBS -l ncpus=1
990	#PBS -l pmem=${memory}mb
991	#PBS -o $remote_dayfile
992	#PBS -j oe
993
994	%%END%%
995
996	fi
997
998	elif [[ $remote_host = lcyon ]]
999	then
1000
1001	if [[ $numprocs != 0 ]]
1002	then
1003	cat > $job_to_send << %%END%%
1004	#!/bin/ksh
1005	#PBS -N $job_name
1006	#PBS -l walltime=$timestring
1007	#PBS -l ncpus=$numprocs
1008	#PBS -l pmem=${memory}mb
1009	#PBS -o $remote_dayfile
1010	#PBS -j oe
1011
1012	%%END%%
1013
1014	else
1015	cat > $job_to_send << %%END%%
1016	#!/bin/ksh
1017	#PBS -N $job_name
1018	#PBS -l walltime=$timestring
1019	#PBS -l ncpus=1
1020	#PBS -l pmem=${memory}mb
1021	#PBS -o $remote_dayfile
1022	#PBS -j oe
1023
1024	%%END%%
1025
1026	fi
1027
1028	elif [[ $remote_host = lcxe6 ]]
1029	then
1030
1031	if [[ $numprocs != 0 ]]
1032	then
1033	cat > $job_to_send << %%END%%
1034	#!/bin/ksh
1035	#PBS -S /bin/ksh
1036	#PBS -N $job_name
1037	#PBS -A $project_account
1038	#PBS -j oe
1039	#PBS -l walltime=$timestring
1040	#PBS -l mppwidth=${numprocs}
1041	#PBS -l mppnppn=${processes_per_node}
1042	#PBS -m abe
1043	#PBS -o $remote_dayfile
1044	$email_directive
1045
1046	$init_cmds
1047	$module_calls
1048
1049	%%END%%
1050
1051	else
1052	cat > $job_to_send << %%END%%
1053	#!/bin/ksh
1054	#PBS -S /bin/ksh
1055	#PBS -N $job_name
1056	#PBS -A $project_account
1057	#PBS -j oe
1058	#PBS -l walltime=$timestring
1059	#PBS -l ncpus=1
1060	#PBS -l pmem=${memory}mb
1061	#PBS -m abe
1062	$email_directive
1063	#PBS -o $remote_dayfile
1064
1065	$init_cmds
1066	$module_calls
1067
1068	%%END%%
1069
1070	fi
1071
1072	elif [[ $remote_host = lckyoto ]]
1073	then
1074
1075	cat > $job_to_send << %%END%%
1076	#!/bin/ksh
1077	# @\$-o $remote_dayfile
1078	# @\$-eo -oi
1079	# @\$-lP 16
1080	# @\$-lp 1
1081	# @\$-lm 28gb -llm unlimited -ls unlimited
1082	# @\$-q $queue
1083	# @\$-Pvn abs_pack
1084	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1085	#. /thin/local/etc/setprofile/intel-11.0.sh
1086	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1087	. ~/.myprofile
1088	#. /home2/t/t51254/palm/current_version/myprofile
1089	#. /thin/apps/pgi/mpi.sh
1090	#
1091	env
1092	#
1093	set -x
1094
1095	%%END%%
1096
1097	elif [[ $remote_host = lcxt5m ]]
1098	then
1099
1100	if [[ $numprocs != 0 ]]
1101	then
1102	cat > $job_to_send << %%END%%
1103	#!/bin/ksh
1104	#PBS -S /bin/ksh
1105	#PBS -N $job_name
1106	#PBS -j oe
1107	#PBS -l walltime=$timestring
1108	#PBS -l mppwidth=${numprocs}
1109	#PBS -l mppnppn=${processes_per_node}
1110	#PBS -m abe
1111	#PBS -o $remote_dayfile
1112
1113	$init_cmds
1114	$module_calls
1115
1116	%%END%%
1117
1118	else
1119	cat > $job_to_send << %%END%%
1120	#!/bin/ksh
1121	#PBS -S /bin/ksh
1122	#PBS -N $job_name
1123	#PBS -j oe
1124	#PBS -l walltime=$timestring
1125	#PBS -l ncpus=1
1126	#PBS -l pmem=${memory}mb
1127	#PBS -m abe
1128	#PBS -o $remote_dayfile
1129
1130	$init_cmds
1131	$module_calls
1132
1133	%%END%%
1134
1135	fi
1136
1137	elif [[ $remote_host = lckyuh ]]
1138	then
1139	cat > $job_to_send << %%END%%
1140	#!/bin/bash
1141	#PJM -L "rscgrp=$queue"
1142	#PJM -L "node=$nodes"
1143	#PJM --mpi "proc=$numprocs"
1144	#PJM -L "elapse=$timestring"
1145	#PJM -o $remote_dayfile
1146	#PJM -j
1147	#PJM -X
1148	#PJM --no-stging
1149
1150	export LANG=en_US.UTF-8
1151	%%END%%
1152
1153	elif [[ $remote_host = lckyut ]]
1154	then
1155	cat > $job_to_send << %%END%%
1156	#!/bin/bash
1157	#PJM -L "rscgrp=$queue"
1158	#PJM -L "vnode=$numprocs"
1159	#PJM -L "vnode-core=1"
1160	#PJM -L "elapse=$timestring"
1161	#PJM --mpi proc=$numprocs
1162	#PJM -o $remote_dayfile
1163	#PJM -j
1164	#PJM -X
1165	#PJM --no-stging
1166
1167	export LANG=en_US.UTF-8
1168	%%END%%
1169
1170	elif [[ $remote_host = lcocean ]]
1171	then
1172	cat > $job_to_send << %%END%%
1173	#!/bin/bash
1174	#$ -cwd
1175	#$ -V
1176	#$ -N $job_name
1177	#$ -pe orte $numprocs
1178	#$ -o $remote_dayfile
1179	#$ -j y
1180	#$ -R y
1181	$init_cmds
1182	$module_calls
1183
1184	%%END%%
1185
1186	elif [[ $remote_host = lctit ]]
1187	then
1188	cat > $job_to_send << %%END%%
1189	#!/bin/ksh
1190	$init_cmds
1191	$module_calls
1192
1193	%%END%%
1194
1195	# SET OPTIONS FOR SUBMIT-COMMAND
1196	if [[ $tasks_per_node != $processes_per_node ]]
1197	then
1198	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1199	else
1200	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1201	fi
1202
1203	else
1204
1205	cat > $job_to_send << %%END%%
1206	# @\$-q ${queue}
1207	# @\$-l${qsubtime} $timestring
1208	# @\$-l${qsubmem} ${memory}mb
1209	# @\$-o $remote_dayfile
1210	# @\$-eo
1211
1212	%%END%%
1213
1214	fi
1215
1216
1217	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1218	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1219	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1220	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1221	then
1222	echo "set +vx" >> $job_to_send
1223	echo "trap '" >> $job_to_send
1224	echo "set +vx" >> $job_to_send
1225	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lcbullhh \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* \|\| $remote_host = lcxe6 \|\| $remote_host = lcocean ]]
1226	then
1227	if [[ $remote_host = ibmh ]]
1228	then
1229	return_queue=c1
1230	elif [[ $remote_host = ibmkisti ]]
1231	then
1232	return_queue=class.1-2
1233	elif [[ $remote_host = ibmku ]]
1234	then
1235	return_queue=sdbg2
1236	elif [[ $remote_host = ibms ]]
1237	then
1238	return_queue=p_normal
1239	elif [[ $remote_host = lcbullhh ]]
1240	then
1241	return_queue=shared
1242	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1243	then
1244	return_queue=dataq
1245	elif [[ $remote_host = lcxe6 ]]
1246	then
1247	return_queue=debug
1248	elif [[ $remote_host = lckiaps ]]
1249	then
1250	return_queue=express
1251	elif [[ $remote_host = lckyuh ]]
1252	then
1253	return_queue=cx-single
1254	elif [[ $remote_host = lckyut ]]
1255	then
1256	return_queue=cx-single
1257	else
1258	return_queue=unknown
1259	fi
1260
1261	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1262	then
1263
1264	if [[ $remote_host = ibmku ]]
1265	then
1266	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1267	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1268	else
1269	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1270	fi
1271	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1272	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1273	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1274	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1275	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1276	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1277	if [[ $host != "ibmh" ]]
1278	then
1279	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1280	fi
1281	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1282	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1283
1284	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1285	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1286
1287	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1288	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1289	if [[ $remote_host = ibmku ]]
1290	then
1291	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1292	fi
1293	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1294
1295	elif [[ $remote_host = lcbullhh ]]
1296	then
1297	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1298	echo "#!/bin/bash" >> $job_to_send
1299	echo "#SBATCH --job-name=job_protocol_transfer" >> $job_to_send
1300	echo "#SBATCH -t 00:20:00" >> $job_to_send
1301	echo "#SBATCH -N 1" >> $job_to_send
1302	echo "#SBATCH -n 1" >> $job_to_send
1303	echo "#SBATCH -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1304	echo "#SBATCH -o $remote_dayfile" >> $job_to_send
1305	echo "#SBATCH -e $remote_dayfile" >> $job_to_send
1306	echo "#SBATCH -A $project_account" >> $job_to_send
1307	echo "#SBATCH -p $return_queue" >> $job_to_send
1308	echo " " >> $job_to_send
1309	echo "set -x" >> $job_to_send
1310	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1311	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1312	echo "%%END%%" >> $job_to_send
1313
1314	elif [[ $remote_host = lckyuh ]]
1315	then
1316	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1317	echo "#!/bin/bash" >> $job_to_send
1318	echo "#PJM -L \"node=1\"" >> $job_to_send
1319	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1320	echo "#PJM --no-stging" >> $job_to_send
1321	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1322	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1323	echo "#PJM -j" >> $job_to_send
1324	echo " " >> $job_to_send
1325	echo "export LANG=en_US.UTF-8" >> $job_to_send
1326	echo "set -x" >> $job_to_send
1327	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1328	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1329	echo "%%END%%" >> $job_to_send
1330
1331	elif [[ $remote_host = lckyut ]]
1332	then
1333	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1334	echo "#!/bin/bash" >> $job_to_send
1335	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1336	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1337	echo "#PJM --no-stging" >> $job_to_send
1338	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1339	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1340	echo "#PJM -j" >> $job_to_send
1341	echo " " >> $job_to_send
1342	echo "export LANG=en_US.UTF-8" >> $job_to_send
1343	echo "set -x" >> $job_to_send
1344	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1345	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1346	echo "%%END%%" >> $job_to_send
1347
1348	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1349	then
1350	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1351	echo "#!/bin/bash" >> $job_to_send
1352	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1353	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1354	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1355	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1356	echo "#PBS -j oe" >> $job_to_send
1357	echo " " >> $job_to_send
1358	echo "set -x" >> $job_to_send
1359	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1360	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1361	echo "%%END%%" >> $job_to_send
1362
1363	elif [[ $remote_host = lcocean ]]
1364	then
1365	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1366	echo "#!/bin/bash" >> $job_to_send
1367	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1368	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1369	echo "SGEPREFIX -cwd" >> $job_to_send
1370	echo "SGEPREFIX -j y" >> $job_to_send
1371	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1372	echo " " >> $job_to_send
1373	echo "set -x" >> $job_to_send
1374	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1375	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1376	echo "" >> $job_to_send
1377	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1378	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1379	echo "rm -f scpjob.${identifier}" >> $job_to_send
1380	echo "%%END%%" >> $job_to_send
1381	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1382	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1383
1384	elif [[ $remote_host = lcxe6 ]]
1385	then
1386	echo "cat > scpjob.${identifier} << %%END%%" >> $job_to_send
1387	echo "#!/bin/ksh" >> $job_to_send
1388	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1389	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1390	echo "#PBS -A $project_account" >> $job_to_send
1391	echo "#PBS -l mppwidth=1" >> $job_to_send
1392	echo "#PBS -l mppnppn=1" >> $job_to_send
1393	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1394	echo "#PBS -j oe" >> $job_to_send
1395	echo " " >> $job_to_send
1396	echo "set -x" >> $job_to_send
1397	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1398	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1399	echo "%%END%%" >> $job_to_send
1400	else
1401
1402	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1403	echo "# @\\\$-q $return_queue" >> $job_to_send
1404	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1405	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1406	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1407	then
1408	echo "# @\$-l mpp_p=0" >> $job_to_send
1409	fi
1410	echo '# @\$-lF 10mb' >> $job_to_send
1411	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1412	echo '# @\\\$-eo' >> $job_to_send
1413	echo " " >> $job_to_send
1414	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1415	then
1416	echo "set +vx" >> $job_to_send
1417	echo ". .profile" >> $job_to_send
1418	fi
1419	echo "set -x" >> $job_to_send
1420	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1421	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1422	echo "%%END%%" >> $job_to_send
1423
1424	fi
1425
1426	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1427	then
1428	echo "llsubmit scpjob.$identifier" >> $job_to_send
1429	elif [[ $remote_host = lcbullhh ]]
1430	then
1431	echo "sbatch scpjob.$identifier" >> $job_to_send
1432	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1433	then
1434	echo "msub -E -q $return_queue scpjob.$identifier" >> $job_to_send
1435	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1436	then
1437	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1438	elif [[ $remote_host = t3es ]]
1439	then
1440	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1441	elif [[ $remote_host = lckiaps ]]
1442	then
1443	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1444	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1445	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1446	elif [[ $remote_host = lckyu* ]]
1447	then
1448	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_address}:job_queue" >> $job_to_send
1449	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_address} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1450	elif [[ $remote_host = lcocean ]]
1451	then
1452	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1453	echo "/usr/bin/ssh ${remote_username}@${remote_address} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1454	else
1455	echo "$submcom scpjob.$identifier" >> $job_to_send
1456	fi
1457	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1458	then
1459	echo "rm scpjob.$identifier" >> $job_to_send
1460	fi
1461	else
1462	# echo "ftpcopy -d $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1463	# ??? funktioniert das ÃŒberhaupt noch ???
1464	echo "nohup ftpcopy -d -w 15 $local_address ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1465	fi
1466	echo "set -x" >> $job_to_send
1467	echo " ' exit" >> $job_to_send
1468	echo "set -x" >> $job_to_send
1469	fi
1470
1471
1472	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1473	cat $file_to_send >> $job_to_send
1474
1475	if [[ $remote_host = ibm ]]
1476	then
1477	echo " " >> $job_to_send
1478	echo "exit" >> $job_to_send
1479	fi
1480
1481	# REMOVE JOB-FILE
1482	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1483	then
1484	echo " " >> $job_to_send
1485	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1486	fi
1487
1488
1489	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1490	if [[ $no_submit = false ]]
1491	then
1492	if [[ $remote_host != $local_host ]]
1493	then
1494	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1495	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1496	then
1497	job_catalog_save=$job_catalog
1498	job_catalog=job_queue
1499	fi
1500	scp $ssh_key $PORTOPT $job_to_send ${remote_user}@${remote_address}:${job_catalog}/$job_on_remhost
1501	if [[ $? = 1 ]]
1502	then
1503	locat=scp; exit
1504	fi
1505	if [[ $remote_host = ibms ]]
1506	then
1507	job_catalog=$job_catalog_save
1508	fi
1509	[[ $verify = true ]] && printf "\n >>> finished\n"
1510	else
1511	eval job_catalog=$job_catalog
1512	cp $job_to_send ${job_catalog}/$job_on_remhost
1513	fi
1514
1515
1516
1517	# START NQS- / LOADLEVELER-JOB
1518	if [[ $remote_host != $local_host ]]
1519	then
1520	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1521
1522	if [[ $remote_host = ibmku ]]
1523	then
1524	ssh $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1525	else
1526	ssh $ssh_key $SSH_PORTOPT $remote_address -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1527	fi
1528
1529	[[ $verify = true ]] && printf " >>> o.k.\n"
1530	else
1531	cd $job_catalog
1532	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray \|\| $local_host = lceddy ]]
1533	then
1534	eval $submcom $job_on_remhost
1535	elif [[ $local_host = lctit \|\| $local_host = lcxe6 \|\| $local_host = lck \|\| $local_host = lckordi \|\| $local_host = lcyon \|\| $local_host = lcsb \|\| $local_host = lckyu* ]]
1536	then
1537	chmod u+x $job_on_remhost
1538	eval $submcom $job_on_remhost
1539	elif [[ $local_host = lcbullhh ]]
1540	then
1541	if [[ $queue = default ]]
1542	then
1543	eval $submcom $job_on_remhost
1544	fi
1545	else
1546	qsub $job_on_remhost
1547	fi
1548
1549	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku. THIS WILL BE DONE
1550	# AT THE END OF THE JOB
1551	if [[ $local_host != lctit && $local_host != ibmku ]]
1552	then
1553	rm $job_on_remhost
1554	fi
1555	cd - > /dev/null
1556	fi
1557	fi
1558
1559	# FINAL ACTIONS
1560	if [[ $no_submit = false ]]
1561	then
1562	rm -f $job_to_send
1563	fi
1564	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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