Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1370

Last change on this file since 1370 was 1351, checked in by maronga, 11 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 50.3 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1351 2014-04-04 13:10:08Z raasch $
30	#
31	# 1350 2014-04-04 13:01:30Z maronga
32	# location of qsub updated for lcxe6
33	#
34	# 1289 2014-03-04 07:12:34Z raasch
35	# German comments translated to English
36	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
37	#
38	# 1279 2014-01-28 12:10:14Z raasch
39	# node calculation modified due to changes in mrun (tasks_per_node must not be
40	# an integral divisor of numprocs any more)
41	#
42	# 1274 2014-01-09 13:14:54Z heinze
43	# adjustments for lccrayh
44	#
45	# 1266 2013-12-11 12:07:34Z heinze
46	# further adjustments for lccrayb (use msub instead of qsub)
47	#
48	# 1264 2013-12-09 12:46:09Z fricke
49	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
50	#
51	# 1262 2013-12-09 10:57:20Z fricke
52	# further adjustments for lccrayb
53	#
54	# 1260 2013-12-04 12:48:04Z raasch
55	# jaboticaba admitted
56	#
57	# 1255 2013-11-07 14:43:35Z raasch
58	# further adjustments for lccrayb
59	#
60	# 1224 2013-09-16 07:27:23Z raasch
61	# first adjustments for lccrayb
62	#
63	# 1202 2013-07-10 16:22:07Z witha
64	# adjustments for Forwind cluster (lcflow)
65	#
66	# 1199 2013-07-05 14:52:22Z raasch
67	# adjustments for CSC Helsinki (lccrayf)
68	#
69	# use of cluster/express queue enabled (ibmh)
70	# vinessa added (imuk)
71	#
72	# 1103 2013-02-20 02:15:53Z raasch
73	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
74	# instead typeset -L/R),
75	# further adjustments for lckyuh
76	#
77	# 2013-02-10 01:47:43Z raasch
78	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
79	# and for Forwind cluster (lcflow)
80	#
81	# 1094 2013-02-03 01:52:12Z raasch
82	# new option -P for explicit setting of ssh/scp port,
83	# decalpha parts (yonsei) removed
84	#
85	# 2013-02-02 07:06:13Z raasch
86	# adjustments for Kyushu-University computing center (lckyut - tatara)
87	# old changelog messages removed
88	#
89	# 1046 2012-11-09 14:38:45Z maronga
90	# code put under GPL (PALM 3.9)
91	#
92	# 08/07/94 - Siggi - first version finished
93	# 29/06/94 - Siggi - script development started
94	#--------------------------------------------------------------------------------#
95	# subjob - script for automatic generation and submission of batch-job files
96	# for various batch queuing systems
97	#--------------------------------------------------------------------------------#
98
99
100	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
101	delete_dayfile=false
102	email_notification=none
103	group_number=none
104	locat=normal
105	no_default_queue=none
106	no_submit=false
107	job_catalog="~/job_queue"
108	job_name=none
109	local_user=$LOGNAME
110	node_usage=shared
111	numprocs=0
112	punkte="..........................................................."
113	submcom=qsub
114	queue=default
115	remote_host=none
116	remote_user=""
117	verify=true
118
119	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
120	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
121
122
123
124	# ERROR HANDLING
125	# IN CASE OF EXIT:
126	trap 'if [[ $locat != normal ]]
127	then
128	case $locat in
129	(option) printf "\n --> available optios can be displayed"
130	printf " by typing:"
131	printf "\n \"subjob ?\" \n";;
132	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
133	(*) printf "\n +++ unknown error"
134	printf "\n please inform S. Raasch!\n"
135	esac
136	[[ -f $job_to_send ]] && rm $job_to_send
137	printf "\n\n+++ SUBJOB killed \n\n"
138	fi' exit
139
140
141	# IN CASE OF TERMINAL-BREAK:
142	trap '[[ -f $job_to_send ]] && rm $job_to_send
143	printf "\n\n+++ SUBJOB killed \n\n"
144	exit
145	' 2
146
147
148
149
150	# DETERMINE NAME OF LOCAL HOST
151	local_host=$(hostname)
152
153
154
155	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
156	# IS ADMITTED AT ALL)
157	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
158	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
159	case $local_host in
160	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
161	(atmos) local_addres=172.20.25.35; local_host=lcide;;
162	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
163	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
164	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
165	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
166	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
167	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
168	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
169	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
170	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
171	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
172	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
173	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
174	(cs*) local_addres=136.172.44.131; local_host=nech;;
175	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
176	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
177	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
178	(node*) local_addres=165.132.26.61 local_host=lck;;
179	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
180	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
181	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
182	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
183	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
184	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
185	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
186	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
187	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
188	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
189	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
190	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
191	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
192	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
193	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
194	(meller) local_addres=134.106.74.155; local_host=lcfor;;
195	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
196	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
197	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
198	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
199	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
200	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
201	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
202	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
203	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
204	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
205	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
206	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
207	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
208	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
209	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
210	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
211	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
212	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
213	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
214	(*) printf "\n +++ \"$local_host\" unknown";
215	printf "\n please contact the PALM group at IMUK";
216	locat=parameter; exit;;
217	esac
218
219
220
221	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
222	remote_host=$local_host
223
224
225
226
227	# READ THE SHELLSCRIPT-OPTIONS
228	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
229	do
230	case $option in
231	(c) job_catalog=$OPTARG;;
232	(d) delete_dayfile=true;;
233	(D) no_submit=true;;
234	(e) email_notification=$OPTARG;;
235	(g) group_number=$OPTARG;;
236	(h) remote_host=$OPTARG;;
237	(m) memory=$OPTARG;;
238	(n) job_name=$OPTARG;;
239	(N) node_usage=$OPTARG;;
240	(O) threads_per_task=$OPTARG;;
241	(P) scp_port=$OPTARG;;
242	(q) no_default_queue=$OPTARG;;
243	(t) cputime=$OPTARG;;
244	(T) tasks_per_node=$OPTARG;;
245	(u) remote_user=$OPTARG;;
246	(v) verify=false;;
247	(X) numprocs=$OPTARG;;
248	(\?) printf "\n +++ Option $OPTARG unknown \n";
249	locat=option; exit;;
250	esac
251	done
252
253
254	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
255	(( to_shift = $OPTIND - 1 ))
256	shift $to_shift; file_to_send=$1
257
258
259	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
260	if [ "$1" = "?" ]
261	then
262	(printf "\n *** subjob can be called as follows:\n"
263	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
264	printf "\n Description of available options:\n"
265	printf "\n Option Description Default-Value"
266	printf "\n -c job-input- and output-catalog ~/job_queue"
267	printf "\n -d no job-protocol will be created ---"
268	printf "\n -D only the job-file will be created ---"
269	printf "\n -h execution host, available hosts: $remote_host"
270	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
271	printf "\n lckiaps, lctit, nech"
272	printf "\n -m memory demand per process in MByte ---"
273	printf "\n -n jobname <jobdatei>"
274	printf "\n -O threads per task (for OpenMP usage) 1"
275	printf "\n -P ssh/scp port default port"
276	printf "\n -q job-queue to be used default"
277	printf "\n -t allowed cpu-time in seconds ---"
278	printf "\n -T tasks per node (on parallel hosts) ---"
279	printf "\n -u username on execution host from .netrc"
280	printf "\n -v no prompt for confirmation ---"
281	printf "\n -X # of processors (on parallel hosts) 1"
282	printf "\n "
283	printf "\n The only possible positional parameter is <jobfile>:"
284	printf "\n The complete NQS-job must be provided here."
285	printf "\n <jobfile>=? creates this outline\n\n") \| more
286	exit
287	fi
288
289
290
291	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
292	if [[ "$file_to_send" = "" ]]
293	then
294	printf "\n +++ job-file missing"
295	locat=parameter; exit
296	else
297	if [[ -f $file_to_send ]]
298	then
299	true
300	else
301	printf "\n +++ job-file: "
302	printf "\n $file_to_send"
303	printf "\n does not exist"
304	locat=parameter; exit
305	fi
306	fi
307
308
309
310	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
311	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
312	if [[ $job_name = none ]]
313	then
314	job_name=$file_to_send
315	fi
316	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
317	then
318	printf "\n +++ job-file name: "
319	printf "\n $job_name"
320	printf "\n must not contain \"/\"-characters"
321	locat=parameter; exit
322	fi
323
324
325
326
327	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
328	# OR IF NO HOST HAS BEEN GIVEN
329	if [[ $remote_host = none ]]
330	then
331	printf "\n +++ host missing"
332	locat=option; exit
333	else
334	case $remote_host in
335	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
336	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
337	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
338	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
339	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
340	(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
341	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
342	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
343	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
344	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
345	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
346	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
347	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
348	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
349	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
350	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
351	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
352	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
353	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
354	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
355	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
356	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
357	locat=parameter; exit;;
358	esac
359	fi
360
361
362	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
363	if [[ $no_default_queue != none ]]
364	then
365	error=false
366	ndq=$no_default_queue
367	case $remote_host in
368	(ibm) case $ndq in
369	(p690_express\|p690_standard\|p690_long) error=false;;
370	(*) error=true;;
371	esac;;
372	(ibmh) case $ndq in
373	(cluster\|express) error=false;;
374	(*) error=true;;
375	esac;;
376	(ibmkisti) case $ndq in
377	(class.32plus\|class.1-2\|class.2-32) error=false;;
378	(*) error=true;;
379	esac;;
380	(ibmku) case $ndq in
381	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
382	(*) error=true;;
383	esac;;
384	(ibms) case $ndq in
385	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
386	(*) error=true;;
387	esac;;
388	(lccrayb) case $ndq in
389	(mpp1q\|testq\|specialm1q) error=false;;
390	(*) error=true;;
391	esac;;
392	(lccrayh) case $ndq in
393	(mpp1q\|mpp1testq\|specialm1q\|dataq) error=false;;
394	(*) error=true;;
395	esac;;
396	(lccrayf) case $ndq in
397	(usup\|test*\|small\|large) error=false;;
398	(*) error=true;;
399	esac;;
400	(lcflow) case $ndq in
401	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
402	(*) error=true;;
403	esac;;
404	(lckiaps) case $ndq in
405	(express\|normal) error=false;;
406	(*) error=true;;
407	esac;;
408	(lckyoto) case $ndq in
409	(eh\|ph) error=false;;
410	(*) error=true;;
411	esac;;
412	(lckyuh) case $ndq in
413	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
414	(*) error=true;;
415	esac;;
416	(lckyut) case $ndq in
417	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
418	(*) error=true;;
419	esac;;
420	(lctit) case $ndq in
421	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
422	(*) error=true;;
423	esac;;
424	(t3eb) case $ndq in
425	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
426	(*) error=true;;
427	esac;;
428	(t3eh) case $ndq in
429	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
430	(*) error=true;;
431	esac;;
432	(t3ej2\|t3ej5) case $ndq in
433	(low\|normal\|high) error=false;;
434	(*) error=true;;
435	esac;;
436	(t3es) case $ndq in
437	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
438	(*) error=true;;
439	esac;;
440	esac
441	if [[ $error = true ]]
442	then
443	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
444	locat=parameter; exit
445	else
446	queue=$no_default_queue
447	fi
448	fi
449
450
451
452	# CHECK THE CPU-TIME
453	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
454	done=false
455	while [[ $done = false ]]
456	do
457	if (( $cputime <= 0 ))
458	then
459	printf "\n +++ wrong cpu-time or cpu-time missing"
460	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
461	printf "\n >>> "
462	read cputime 1>/dev/null 2>&1
463	else
464	done=true
465	fi
466	done
467	if [[ $remote_host = nech ]]
468	then
469	if (( tasks_per_node != 0 ))
470	then
471	(( cputime = cputime * tasks_per_node ))
472	elif [[ $numprocs != 0 ]]
473	then
474	(( cputime = cputime * numprocs ))
475	fi
476	fi
477	(( stunden = cputime / 3600 ))
478	(( resttime = cputime - stunden * 3600 ))
479	(( minuten = resttime / 60 ))
480	(( sekunden = resttime - minuten * 60 ))
481	timestring=${stunden}:${minuten}:${sekunden}
482
483
484
485	# CHECK THE MEMORY DEMAND
486	done=false
487	while [[ $done = false ]]
488	do
489	if (( memory <= 0 ))
490	then
491	printf "\n +++ wrong memory demand or memory demand missing"
492	printf "\n >>> Please type memory in MByte per process as INTEGER:"
493	printf "\n >>> "
494	read memory 1>/dev/null 2>&1
495	else
496	done=true
497	fi
498	done
499
500	if [[ $remote_host = nech ]]
501	then
502	if (( tasks_per_node != 0 ))
503	then
504	(( Memory = memory * tasks_per_node / 1000 ))
505	elif [[ $numprocs != 0 ]]
506	then
507	(( Memory = memory * numprocs / 1000 ))
508	else
509	(( Memory = memory / 1000 ))
510	fi
511	elif [[ $remote_host = lctit ]]
512	then
513	(( Memory = memory * tasks_per_node / 1000 ))
514	fi
515
516
517	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
518	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
519	then
520	(( memory = memory * threads_per_task ))
521	fi
522
523
524	# CALCULATE NUMBER OF REQUIRED NODES
525	if (( tasks_per_node != 0 ))
526	then
527	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
528	fi
529
530
531	# CALCULATE NUMBER OF PROCESSES PER NODE
532	(( processes_per_node = tasks_per_node * threads_per_task ))
533
534
535	# CALCULATE NUMBER OF MPI TASKS
536	(( mpi_tasks = numprocs / threads_per_task ))
537
538
539	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
540	if [[ "$scp_port" != "" ]]
541	then
542	PORTOPT="-P $scp_port"
543	SSH_PORTOPT="-p $scp_port"
544	fi
545
546
547	# HEADER-OUTPUT
548	if [[ $verify = true ]]
549	then
550	printf "\n\n"
551	printf "#--------------------------------------------------------------# \n"
552	spalte1=SUBJOB;spalte2=$(date)
553	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
554	printf "\| \| \n"
555	printf "\| values of parameters/options: \| \n"
556	spalte1=$(echo local_host$punkte \| cut -c-20)
557	spalte2=$punkte$local_host
558	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
559	spalte1=$(echo remote_host$punkte \| cut -c-20)
560	spalte2=$punkte$remote_host
561	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
562	spalte1=$(echo queue$punkte \| cut -c-20)
563	spalte2=$punkte$queue
564	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
565	spalte1=$(echo memory$punkte \| cut -c-20)
566	spalte2="$punkte$memory mb"
567	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
568	spalte1=$(echo cputime$punkte \| cut -c-20)
569	spalte2="$punkte$cputime sec"
570	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
571	spalte1=$(echo job_name$punkte \| cut -c-20)
572	spalte2="$punkte$job_name"
573	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
574	printf "#--------------------------------------------------------------# \n\n"
575
576
577	# QUERY CHECK
578	antwort="dummy"
579	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
580	do
581	read antwort?" >>> continue (y/n) ? "
582	done
583	if [[ $antwort = n \|\| $antwort = N ]]
584	then
585	locat=verify; exit
586	fi
587	printf "\n"
588	fi
589
590
591
592	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
593	identifier=$RANDOM
594	job_on_remhost=${job_name}_${identifier}_$local_host
595	job_to_send=job_to_send_$identifier
596	if [[ $delete_dayfile = false ]]
597	then
598	remote_dayfile=${local_host}_${job_name}_result_$identifier
599	local_dayfile=${remote_host}_${job_name}
600	else
601	remote_dayfile=/dev/null
602	fi
603
604
605
606	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
607	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
608	then
609
610	# GENERAL LOADLEVELER SETTINGS
611	execute_in_shell="#!/bin/ksh"
612	use_shell="# @ shell = /bin/ksh"
613	consumable_memory="ConsumableMemory($memory mb)"
614	class="# @ class = $queue"
615	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
616	network_to_use="# @ network.mpi = sn_all,shared,us"
617	data_limit="# @ data_limit = 1.76gb"
618	image_size="# @ image_size = 50"
619	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
620
621	if [[ $email_notification = none ]]
622	then
623	notify_user=""
624	else
625	notify_user="# @ notify_user = $email_notification"
626	if [[ $delete_dayfile = true ]]
627	then
628	notification='# @ notification = never'
629	fi
630	fi
631
632	if [[ $remote_host = ibmh ]]
633	then
634	data_limit=""
635	network_to_use=""
636	class="# @ class = $queue"
637	environment=""
638	rset="# @ rset = RSET_MCM_AFFINITY"
639	task_affinity="# @ task_affinity = core(1)"
640	elif [[ $remote_host = ibmkisti ]]
641	then
642	network_to_use="# @ network.MPI = sn_all,shared,US"
643	wall_clock_limit="# @ wall_clock_limit = $timestring"
644	if [[ $threads_per_task = 1 ]]
645	then
646	rset="# @ rset = RSET_MCM_AFFINITY"
647	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
648	fi
649	environment=""
650	use_shell=""
651	data_limit=""
652	image_size=""
653	elif [[ $remote_host = ibmku ]]
654	then
655	execute_in_shell="#!/usr/bin/ksh"
656	use_shell="# @ shell = /usr/bin/ksh"
657	consumable_memory=""
658	environment=""
659	network_to_use="# @ network.mpi = sn_all,shared,us"
660	data_limit=""
661	image_size=""
662	elif [[ $remote_host = ibms ]]
663	then
664	network_to_use="# @ network.mpi = csss,shared,us"
665	fi
666
667	cat > $job_to_send << %%END%%
668	$execute_in_shell
669	$use_shell
670
671	# @ job_type = parallel
672	# @ job_name = $job_name
673	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
674	# @ output = $remote_dayfile
675	# @ error = $remote_dayfile
676	$wall_clock_limit
677	$image_size
678	$class
679	$environment
680	$network_to_use
681	$data_limit
682	$rset
683	$mcm_affinity_options
684	$task_affinity
685	$notification
686	$notify_user
687
688	%%END%%
689
690	if (( nodes > 0 ))
691	then
692
693	if [[ $remote_host != ibmkisti ]]
694	then
695
696	cat >> $job_to_send << %%END%%
697	# @ node = $nodes
698	# @ tasks_per_node = $processes_per_node
699	# @ node_usage = $node_usage
700	# @ queue
701
702	%%END%%
703
704	else
705
706	cat >> $job_to_send << %%END%%
707	# @ total_tasks = $mpi_tasks
708	# @ blocking = unlimited
709	# @ queue
710
711	%%END%%
712
713	fi
714
715	else
716
717	cat >> $job_to_send << %%END%%
718	# @ blocking = unlimited
719	# @ total_tasks = $numprocs
720	# @ node_usage = $node_usage
721	# @ queue
722
723	%%END%%
724
725	fi
726
727	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
728	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
729	then
730	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
731	fi
732
733	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
734	then
735
736	cat > $job_to_send << %%END%%
737	#!/bin/ksh
738
739	# @ job_type = serial
740	# @ node_usage = $node_usage
741	# @ job_name = palm
742	# @ wall_clock_limit = ${timestring},$timestring
743	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
744	# @ output = $remote_dayfile
745	# @ error = $remote_dayfile
746	$class
747	$notification
748
749	# @ queue
750
751	%%END%%
752
753	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
754	then
755
756	if [[ $numprocs != 0 ]]
757	then
758	cat > $job_to_send << %%END%%
759	#!/bin/bash
760	#PBS -N $job_name
761	#PBS -l walltime=$timestring
762	#PBS -l nodes=$nodes:ppn=$processes_per_node
763	#PBS -o $remote_dayfile
764	#PBS -j oe
765	#PBS -q $queue
766
767	$module_calls
768
769	%%END%%
770
771	else
772
773	continue
774
775	fi
776
777	elif [[ $remote_host = lccrayf ]]
778	then
779
780	if [[ $numprocs != 0 ]]
781	then
782	cat > $job_to_send << %%END%%
783	#!/bin/bash -l
784	#SBATCH -J $job_name
785	#SBATCH -t $timestring
786	#SBATCH -N $nodes
787	#SBATCH --ntasks-per-node=$processes_per_node
788	#SBATCH -p $queue
789	#SBATCH -o $remote_dayfile
790	#SBATCH -e $remote_dayfile
791
792	$init_cmds
793	$module_calls
794
795	%%END%%
796
797	else
798	cat > $job_to_send << %%END%%
799	#!/bin/bash -l
800	#SBATCH -J $job_name
801	#SBATCH -t $timestring
802	#SBATCH -l ncpus=1
803	#SBATCH -l pmem=${memory}mb
804	#SBATCH -m abe
805	#SBATCH -o $remote_dayfile
806	#SBATCH -e $remote_dayfile
807
808	$init_cmds
809	$module_calls
810
811	%%END%%
812
813	fi
814
815	elif [[ $remote_host = lcflow ]]
816	then
817	if [ $memory -gt 1800 ]; then
818	use_himem=""
819	else
820	use_himem="#"
821	fi
822	if [[ $numprocs != 0 ]]
823	then
824	pe_set="#$ -pe impi41 $numprocs"
825	else
826	pe_set="#$ -pe impi41 1"
827	fi
828	if [[ $queue = default ]]
829	then
830	queue_set=""
831	else
832	queue_set="#$ -q $queue"
833	fi
834	[[ "$disc_space" = "" ]] && disc_space=50
835
836	cat > $job_to_send << %%END%%
837	#!/bin/bash
838	#$ -S /bin/bash
839	#$ -N $job_name
840	#$ -cwd
841	#$ -l h_rt=$timestring
842	#$ -l h_vmem=${memory}M
843	#$ -o $remote_dayfile
844	#$ -j y
845	$pe_set
846	#$ -R y
847	${use_himem}#$ -l highmem=true
848	#$ -l h_fsize=${disc_space}G
849	$queue_set
850
851	%%END%%
852
853	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
854	then
855
856	if [[ $numprocs != 0 ]]
857	then
858	cat > $job_to_send << %%END%%
859	#!/bin/ksh
860	#PBS -N $job_name
861	#PBS -l walltime=$timestring
862	#PBS -l ncpus=$numprocs
863	#PBS -l pmem=${memory}mb
864	#PBS -o $remote_dayfile
865	#PBS -l nodes=$nodes:ppn=${processes_per_node}
866	#PBS -j oe
867
868	mpd &
869
870	%%END%%
871
872	else
873	cat > $job_to_send << %%END%%
874	#!/bin/ksh
875	#PBS -N $job_name
876	#PBS -l walltime=$timestring
877	#PBS -l ncpus=1
878	#PBS -l pmem=${memory}mb
879	#PBS -o $remote_dayfile
880	#PBS -j oe
881
882	%%END%%
883
884	fi
885
886	elif [[ $remote_host = lckiaps ]]
887	then
888
889	if [[ $numprocs != 0 ]]
890	then
891	cat > $job_to_send << %%END%%
892	#!/bin/ksh
893	#PBS -N $job_name
894	#PBS -l walltime=$timestring
895	#PBS -l select=1:ncpus=$numprocs
896	#PBS -l pmem=${memory}mb
897	#PBS -q $queue
898	#PBS -o $remote_dayfile
899	#PBS -j oe
900	#PBS -V
901
902	%%END%%
903
904	else
905	cat > $job_to_send << %%END%%
906	#!/bin/ksh
907	#PBS -N $job_name
908	#PBS -l walltime=$timestring
909	#PBS -l ncpus=1
910	#PBS -l pmem=${memory}mb
911	#PBS -o $remote_dayfile
912	#PBS -j oe
913
914	%%END%%
915
916	fi
917
918	elif [[ $remote_host = lcyon ]]
919	then
920
921	if [[ $numprocs != 0 ]]
922	then
923	cat > $job_to_send << %%END%%
924	#!/bin/ksh
925	#PBS -N $job_name
926	#PBS -l walltime=$timestring
927	#PBS -l ncpus=$numprocs
928	#PBS -l pmem=${memory}mb
929	#PBS -o $remote_dayfile
930	#PBS -j oe
931
932	%%END%%
933
934	else
935	cat > $job_to_send << %%END%%
936	#!/bin/ksh
937	#PBS -N $job_name
938	#PBS -l walltime=$timestring
939	#PBS -l ncpus=1
940	#PBS -l pmem=${memory}mb
941	#PBS -o $remote_dayfile
942	#PBS -j oe
943
944	%%END%%
945
946	fi
947
948	elif [[ $remote_host = lcxe6 ]]
949	then
950
951	if [[ $numprocs != 0 ]]
952	then
953	cat > $job_to_send << %%END%%
954	#!/bin/ksh
955	#PBS -S /bin/ksh
956	#PBS -N $job_name
957	#PBS -A $project_account
958	#PBS -j oe
959	#PBS -l walltime=$timestring
960	#PBS -l mppwidth=${numprocs}
961	#PBS -l mppnppn=${processes_per_node}
962	#PBS -m abe
963	#PBS -o $remote_dayfile
964	$email_directive
965
966	$init_cmds
967	$module_calls
968
969	%%END%%
970
971	else
972	cat > $job_to_send << %%END%%
973	#!/bin/ksh
974	#PBS -S /bin/ksh
975	#PBS -N $job_name
976	#PBS -A $project_account
977	#PBS -j oe
978	#PBS -l walltime=$timestring
979	#PBS -l ncpus=1
980	#PBS -l pmem=${memory}mb
981	#PBS -m abe
982	$email_directive
983	#PBS -o $remote_dayfile
984
985	$init_cmds
986	$module_calls
987
988	%%END%%
989
990	fi
991
992	elif [[ $remote_host = lckyoto ]]
993	then
994
995	cat > $job_to_send << %%END%%
996	#!/bin/ksh
997	# @\$-o $remote_dayfile
998	# @\$-eo -oi
999	# @\$-lP 16
1000	# @\$-lp 1
1001	# @\$-lm 28gb -llm unlimited -ls unlimited
1002	# @\$-q $queue
1003	# @\$-Pvn abs_pack
1004	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1005	#. /thin/local/etc/setprofile/intel-11.0.sh
1006	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1007	. ~/.myprofile
1008	#. /home2/t/t51254/palm/current_version/myprofile
1009	#. /thin/apps/pgi/mpi.sh
1010	#
1011	env
1012	#
1013	set -x
1014
1015	%%END%%
1016
1017	elif [[ $remote_host = lcxt5m ]]
1018	then
1019
1020	if [[ $numprocs != 0 ]]
1021	then
1022	cat > $job_to_send << %%END%%
1023	#!/bin/ksh
1024	#PBS -S /bin/ksh
1025	#PBS -N $job_name
1026	#PBS -j oe
1027	#PBS -l walltime=$timestring
1028	#PBS -l mppwidth=${numprocs}
1029	#PBS -l mppnppn=${processes_per_node}
1030	#PBS -m abe
1031	#PBS -o $remote_dayfile
1032
1033	$init_cmds
1034	$module_calls
1035
1036	%%END%%
1037
1038	else
1039	cat > $job_to_send << %%END%%
1040	#!/bin/ksh
1041	#PBS -S /bin/ksh
1042	#PBS -N $job_name
1043	#PBS -j oe
1044	#PBS -l walltime=$timestring
1045	#PBS -l ncpus=1
1046	#PBS -l pmem=${memory}mb
1047	#PBS -m abe
1048	#PBS -o $remote_dayfile
1049
1050	$init_cmds
1051	$module_calls
1052
1053	%%END%%
1054
1055	fi
1056
1057	elif [[ $remote_host = lckyuh ]]
1058	then
1059	cat > $job_to_send << %%END%%
1060	#!/bin/bash
1061	#PJM -L "rscgrp=$queue"
1062	#PJM -L "node=$nodes"
1063	#PJM --mpi "proc=$numprocs"
1064	#PJM -L "elapse=$timestring"
1065	#PJM -o $remote_dayfile
1066	#PJM -j
1067	#PJM -X
1068	#PJM --no-stging
1069
1070	export LANG=en_US.UTF-8
1071	%%END%%
1072
1073	elif [[ $remote_host = lckyut ]]
1074	then
1075	cat > $job_to_send << %%END%%
1076	#!/bin/bash
1077	#PJM -L "rscgrp=$queue"
1078	#PJM -L "vnode=$numprocs"
1079	#PJM -L "vnode-core=1"
1080	#PJM -L "elapse=$timestring"
1081	#PJM --mpi proc=$numprocs
1082	#PJM -o $remote_dayfile
1083	#PJM -j
1084	#PJM -X
1085	#PJM --no-stging
1086
1087	export LANG=en_US.UTF-8
1088	%%END%%
1089
1090	elif [[ $remote_host = nech ]]
1091	then
1092
1093	if (( nodes > 1 ))
1094	then
1095	cat > $job_to_send << %%END%%
1096	#!/bin/ksh
1097	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1098	#PBS -l ${qsubmem}=${Memory}gb
1099	#PBS -b $nodes
1100	#PBS -o $remote_dayfile
1101	#PBS -N palm
1102	#PBS -j o
1103	#PBS -T mpisx
1104
1105	%%END%%
1106
1107	elif [[ $numprocs != 0 ]]
1108	then
1109	cat > $job_to_send << %%END%%
1110	#!/bin/ksh
1111	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1112	#PBS -l ${qsubmem}=${Memory}gb
1113	#PBS -o $remote_dayfile
1114	#PBS -N palm
1115	#PBS -j o
1116
1117	%%END%%
1118
1119	else
1120	cat > $job_to_send << %%END%%
1121	#!/bin/ksh
1122	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1123	#PBS -o $remote_dayfile
1124	#PBS -j o
1125
1126	%%END%%
1127
1128	fi
1129
1130	elif [[ $remote_host = lctit ]]
1131	then
1132	cat > $job_to_send << %%END%%
1133	#!/bin/ksh
1134	$init_cmds
1135	$module_calls
1136
1137	%%END%%
1138
1139	# SET OPTIONS FOR SUBMIT-COMMAND
1140	if [[ $tasks_per_node != $processes_per_node ]]
1141	then
1142	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1143	else
1144	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1145	fi
1146
1147	else
1148
1149	cat > $job_to_send << %%END%%
1150	# @\$-q ${queue}
1151	# @\$-l${qsubtime} $timestring
1152	# @\$-l${qsubmem} ${memory}mb
1153	# @\$-o $remote_dayfile
1154	# @\$-eo
1155
1156	%%END%%
1157
1158	fi
1159
1160
1161	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1162	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1163	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1164	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1165	then
1166	echo "set +vx" >> $job_to_send
1167	echo "trap '" >> $job_to_send
1168	echo "set +vx" >> $job_to_send
1169	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1170	then
1171	if [[ $remote_host = ibmh ]]
1172	then
1173	return_queue=c1
1174	elif [[ $remote_host = ibmkisti ]]
1175	then
1176	return_queue=class.1-2
1177	elif [[ $remote_host = ibmku ]]
1178	then
1179	return_queue=sdbg2
1180	elif [[ $remote_host = ibms ]]
1181	then
1182	return_queue=p_normal
1183	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1184	then
1185	return_queue=dataq
1186	elif [[ $remote_host = lckiaps ]]
1187	then
1188	return_queue=express
1189	elif [[ $remote_host = lckyuh ]]
1190	then
1191	return_queue=cx-single
1192	elif [[ $remote_host = lckyut ]]
1193	then
1194	return_queue=cx-single
1195	else
1196	return_queue=unknown
1197	fi
1198
1199	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1200	then
1201
1202	if [[ $remote_host = ibmku ]]
1203	then
1204	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1205	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1206	else
1207	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1208	fi
1209	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1210	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1211	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1212	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1213	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1214	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1215	if [[ $host != "ibmh" ]]
1216	then
1217	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1218	fi
1219	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1220	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1221
1222	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1223	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1224
1225	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1226	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1227	if [[ $remote_host = ibmku ]]
1228	then
1229	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1230	fi
1231	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1232
1233	elif [[ $remote_host = nech ]]
1234	then
1235	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1236	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1237	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1238	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1239	echo "#PBS -j o" >> $job_to_send
1240	echo " " >> $job_to_send
1241	echo "set -x" >> $job_to_send
1242	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1243	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1244	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1245	echo "%%END%%" >> $job_to_send
1246
1247	elif [[ $remote_host = lckyuh ]]
1248	then
1249	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1250	echo "#!/bin/bash" >> $job_to_send
1251	echo "#PJM -L \"node=1\"" >> $job_to_send
1252	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1253	echo "#PJM --no-stging" >> $job_to_send
1254	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1255	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1256	echo "#PJM -j" >> $job_to_send
1257	echo " " >> $job_to_send
1258	echo "export LANG=en_US.UTF-8" >> $job_to_send
1259	echo "set -x" >> $job_to_send
1260	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1261	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1262	echo "%%END%%" >> $job_to_send
1263
1264	elif [[ $remote_host = lckyut ]]
1265	then
1266	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1267	echo "#!/bin/bash" >> $job_to_send
1268	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1269	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1270	echo "#PJM --no-stging" >> $job_to_send
1271	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1272	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1273	echo "#PJM -j" >> $job_to_send
1274	echo " " >> $job_to_send
1275	echo "export LANG=en_US.UTF-8" >> $job_to_send
1276	echo "set -x" >> $job_to_send
1277	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1278	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1279	echo "%%END%%" >> $job_to_send
1280
1281	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1282	then
1283	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1284	echo "#!/bin/bash" >> $job_to_send
1285	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1286	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1287	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1288	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1289	echo "#PBS -j oe" >> $job_to_send
1290	echo " " >> $job_to_send
1291	echo "set -x" >> $job_to_send
1292	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1293	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1294	echo "%%END%%" >> $job_to_send
1295
1296	elif [[ $remote_host = lcflow ]]
1297	then
1298	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1299	echo "#!/bin/bash" >> $job_to_send
1300	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1301	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1302	echo "SGEPREFIX -cwd" >> $job_to_send
1303	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1304	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1305	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1306	echo "SGEPREFIX -j y" >> $job_to_send
1307	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1308	echo " " >> $job_to_send
1309	echo "set -x" >> $job_to_send
1310	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1311	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1312	echo "" >> $job_to_send
1313	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1314	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1315	echo "rm -f scpjob.${identifier}" >> $job_to_send
1316	echo "%%END%%" >> $job_to_send
1317	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1318	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1319
1320	else
1321
1322	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1323	echo "# @\\\$-q $return_queue" >> $job_to_send
1324	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1325	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1326	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1327	then
1328	echo "# @\$-l mpp_p=0" >> $job_to_send
1329	fi
1330	echo '# @\$-lF 10mb' >> $job_to_send
1331	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1332	echo '# @\\\$-eo' >> $job_to_send
1333	echo " " >> $job_to_send
1334	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1335	then
1336	echo "set +vx" >> $job_to_send
1337	echo ". .profile" >> $job_to_send
1338	fi
1339	echo "set -x" >> $job_to_send
1340	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1341	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1342	echo "%%END%%" >> $job_to_send
1343	fi
1344
1345	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1346	then
1347	echo "llsubmit scpjob.$identifier" >> $job_to_send
1348	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1349	then
1350	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1351	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1352	then
1353	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1354	elif [[ $remote_host = t3es ]]
1355	then
1356	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1357	elif [[ $remote_host = lckiaps ]]
1358	then
1359	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1360	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1361	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1362	elif [[ $remote_host = lckyu* ]]
1363	then
1364	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1365	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1366	elif [[ $remote_host = lcflow ]]
1367	then
1368	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1369	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1370	else
1371	echo "$submcom scpjob.$identifier" >> $job_to_send
1372	fi
1373	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1374	then
1375	echo "rm scpjob.$identifier" >> $job_to_send
1376	fi
1377	if [[ $remote_host = nech ]]
1378	then
1379	echo "cd -" >> $job_to_send
1380	fi
1381	else
1382	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1383	# ??? funktioniert das ÃŒberhaupt noch ???
1384	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1385	fi
1386	echo "set -x" >> $job_to_send
1387	echo " ' exit" >> $job_to_send
1388	echo "set -x" >> $job_to_send
1389	fi
1390
1391
1392
1393	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1394	cat $file_to_send >> $job_to_send
1395
1396	if [[ $remote_host = ibm ]]
1397	then
1398	echo " " >> $job_to_send
1399	echo "exit" >> $job_to_send
1400	fi
1401
1402	# REMOVE JOB-FILE
1403	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1404	then
1405	echo " " >> $job_to_send
1406	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1407	fi
1408
1409
1410	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1411	if [[ $no_submit = false ]]
1412	then
1413	if [[ $remote_host != $local_host ]]
1414	then
1415	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1416	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1417	then
1418	job_catalog_save=$job_catalog
1419	job_catalog=job_queue
1420	elif [[ $remote_host = nech ]]
1421	then
1422	job_catalog_save=$job_catalog
1423	job_catalog=/hpf/b/${remote_user}/job_queue
1424	fi
1425	if [[ $remote_host = nech ]]
1426	then
1427	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1428	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1429	else
1430	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1431	fi
1432	if [[ $? = 1 ]]
1433	then
1434	locat=scp; exit
1435	fi
1436	if [[ $remote_host = ibms ]]
1437	then
1438	job_catalog=$job_catalog_save
1439	fi
1440	[[ $verify = true ]] && printf "\n >>> finished\n"
1441	else
1442	eval job_catalog=$job_catalog
1443	cp $job_to_send ${job_catalog}/$job_on_remhost
1444	fi
1445
1446
1447
1448	# START NQS- / LOADLEVELER-JOB
1449	if [[ $remote_host != $local_host ]]
1450	then
1451	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1452
1453	if [[ $remote_host = ibmku ]]
1454	then
1455	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1456	elif [[ $remote_host = lcflow ]]
1457	then
1458	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1459	else
1460	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1461	fi
1462
1463	[[ $verify = true ]] && printf " >>> o.k.\n"
1464	else
1465	cd $job_catalog
1466	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1467	then
1468	eval $submcom $job_on_remhost
1469	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1470	then
1471	chmod u+x $job_on_remhost
1472	eval $submcom $job_on_remhost
1473	elif [[ $local_host = nech ]]
1474	then
1475	if [[ $queue = default ]]
1476	then
1477	eval $submcom $job_on_remhost
1478	else
1479	eval $submcom -q $queue $job_on_remhost
1480	fi
1481	else
1482	qsub $job_on_remhost
1483	fi
1484
1485	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1486	# AT THE END OF THE JOB
1487	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1488	then
1489	rm $job_on_remhost
1490	fi
1491	cd - > /dev/null
1492	fi
1493	fi
1494
1495
1496
1497	# FINAL ACTIONS
1498	if [[ $no_submit = false ]]
1499	then
1500	rm -f $job_to_send
1501	fi
1502	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |