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source: palm/trunk/SCRIPTS/subjob @ 1267

Last change on this file since 1267 was 1267, checked in by heinze, 11 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# further adjustments for lccrayb (use msub instead of qsub)
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1267 2013-12-11 12:08:28Z heinze $
30	#
31	# 1266 2013-12-11 12:07:34Z heinze
32	# further adjustments for lccrayb (use msub instead of qsub)
33	#
34	# 1264 2013-12-09 12:46:09Z fricke
35	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
36	#
37	# 1262 2013-12-09 10:57:20Z fricke
38	# further adjustments for lccrayb
39	#
40	# 1260 2013-12-04 12:48:04Z raasch
41	# jaboticaba admitted
42	#
43	# 1255 2013-11-07 14:43:35Z raasch
44	# further adjustments for lccrayb
45	#
46	# 1224 2013-09-16 07:27:23Z raasch
47	# first adjustments for lccrayb
48	#
49	# 1202 2013-07-10 16:22:07Z witha
50	# adjustments for Forwind cluster (lcflow)
51	#
52	# 1199 2013-07-05 14:52:22Z raasch
53	# adjustments for CSC Helsinki (lccrayf)
54	#
55	# use of cluster/express queue enabled (ibmh)
56	# vinessa added (imuk)
57	#
58	# 1103 2013-02-20 02:15:53Z raasch
59	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
60	# instead typeset -L/R),
61	# further adjustments for lckyuh
62	#
63	# 2013-02-10 01:47:43Z raasch
64	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
65	# and for Forwind cluster (lcflow)
66	#
67	# 1094 2013-02-03 01:52:12Z raasch
68	# new option -P for explicit setting of ssh/scp port,
69	# decalpha parts (yonsei) removed
70	#
71	# 2013-02-02 07:06:13Z raasch
72	# adjustments for Kyushu-University computing center (lckyut - tatara)
73	# old changelog messages removed
74	#
75	# 1046 2012-11-09 14:38:45Z maronga
76	# code put under GPL (PALM 3.9)
77	#
78	# 08/07/94 - Siggi - first version finished
79	# 29/06/94 - Siggi - script development started
80	#--------------------------------------------------------------------------------#
81	# subjob - script for automatic generation and submission of batch-job files
82	# for various batch queuing systems
83	#--------------------------------------------------------------------------------#
84
85
86	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
87	delete_dayfile=false
88	email_notification=none
89	group_number=none
90	locat=normal
91	no_default_queue=none
92	no_submit=false
93	job_catalog="~/job_queue"
94	job_name=none
95	local_user=$LOGNAME
96	node_usage=shared
97	numprocs=0
98	punkte="..........................................................."
99	submcom=qsub
100	queue=default
101	remote_host=none
102	remote_user=""
103	verify=true
104
105	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
106	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
107
108
109
110	# FEHLERBEHANDLUNG
111	# BEI EXIT:
112	trap 'if [[ $locat != normal ]]
113	then
114	case $locat in
115	(option) printf "\n --> available optios can be displayed"
116	printf " by typing:"
117	printf "\n \"subjob ?\" \n";;
118	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
119	(*) printf "\n +++ unknown error"
120	printf "\n please inform S. Raasch!\n"
121	esac
122	[[ -f $job_to_send ]] && rm $job_to_send
123	printf "\n\n+++ SUBJOB killed \n\n"
124	fi' exit
125
126
127	# BEI TERMINAL-BREAK:
128	trap '[[ -f $job_to_send ]] && rm $job_to_send
129	printf "\n\n+++ SUBJOB killed \n\n"
130	exit
131	' 2
132
133
134
135
136	# LOKALEN HOSTNAMEN FESTSTELLEN
137	local_host=$(hostname)
138
139
140
141	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
142	# UEBERHAUPT ZULAESSIG IST
143	# Note: One of the entries for "lck" or "lckordi" always has to be
144	# comment out, because the hostname (node*) is same for both machines
145	case $local_host in
146	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
147	(atmos) local_addres=172.20.25.35; local_host=lcide;;
148	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
149	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
150	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
151	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
152	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
153	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
154	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
155	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
156	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
157	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
158	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
159	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
160	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
161	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
162	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
163	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
164	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
165	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
166	(cs*) local_addres=136.172.44.131; local_host=nech;;
167	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
168	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
169	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
170	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
171	(node*) local_addres=165.132.26.61 local_host=lck;;
172	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
173	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
174	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
175	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
176	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
177	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
178	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
179	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
180	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
181	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
182	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
183	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
184	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
185	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
186	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
187	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
188	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
189	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
190	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
191	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
192	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
193	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
194	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
195	(meller) local_addres=134.106.74.155; local_host=lcfor;;
196	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
197	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
198	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
199	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
200	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
201	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
202	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
203	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
204	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
205	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
206	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
207	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
208	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
209	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
210	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
211	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
212	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
213	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
214	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
215	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
216	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
217	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
218	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
219	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
220	(*) printf "\n +++ \"$local_host\" unknown";
221	printf "\n please contact the PALM group at IMUK";
222	locat=parameter; exit;;
223	esac
224
225
226
227	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
228	remote_host=$local_host
229
230
231
232
233	# PROZEDUROPTIONEN EINLESEN
234	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
235	do
236	case $option in
237	(c) job_catalog=$OPTARG;;
238	(d) delete_dayfile=true;;
239	(D) no_submit=true;;
240	(e) email_notification=$OPTARG;;
241	(g) group_number=$OPTARG;;
242	(h) remote_host=$OPTARG;;
243	(m) memory=$OPTARG;;
244	(n) job_name=$OPTARG;;
245	(N) node_usage=$OPTARG;;
246	(O) threads_per_task=$OPTARG;;
247	(P) scp_port=$OPTARG;;
248	(q) no_default_queue=$OPTARG;;
249	(t) cputime=$OPTARG;;
250	(T) tasks_per_node=$OPTARG;;
251	(u) remote_user=$OPTARG;;
252	(v) verify=false;;
253	(X) numprocs=$OPTARG;;
254	(\?) printf "\n +++ Option $OPTARG unknown \n";
255	locat=option; exit;;
256	esac
257	done
258
259
260	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
261	(( to_shift = $OPTIND - 1 ))
262	shift $to_shift; file_to_send=$1
263
264
265	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
266	if [ "$1" = "?" ]
267	then
268	(printf "\n *** subjob can be called as follows:\n"
269	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
270	printf "\n Description of available options:\n"
271	printf "\n Option Description Default-Value"
272	printf "\n -c job-input- and output-catalog ~/job_queue"
273	printf "\n -d no job-protocol will be created ---"
274	printf "\n -D only the job-file will be created ---"
275	printf "\n -h execution host, available hosts: $remote_host"
276	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
277	printf "\n lckiaps, lctit, nech, necriam, unics"
278	printf "\n -m memory demand per process in MByte ---"
279	printf "\n -n jobname <jobdatei>"
280	printf "\n -O threads per task (for OpenMP usage) 1"
281	printf "\n -P ssh/scp port default port"
282	printf "\n -q job-queue to be used default"
283	printf "\n -t allowed cpu-time in seconds ---"
284	printf "\n -T tasks per node (on parallel hosts) ---"
285	printf "\n -u username on execution host from .netrc"
286	printf "\n -v no prompt for confirmation ---"
287	printf "\n -X # of processors (on parallel hosts) 1"
288	printf "\n "
289	printf "\n The only possible positional parameter is <jobfile>:"
290	printf "\n The complete NQS-job must be provided here."
291	printf "\n <jobfile>=? creates this outline\n\n") \| more
292	exit
293	fi
294
295
296
297	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
298	if [[ "$file_to_send" = "" ]]
299	then
300	printf "\n +++ job-file missing"
301	locat=parameter; exit
302	else
303	if [[ -f $file_to_send ]]
304	then
305	true
306	else
307	printf "\n +++ job-file: "
308	printf "\n $file_to_send"
309	printf "\n does not exist"
310	locat=parameter; exit
311	fi
312	fi
313
314
315
316	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
317	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
318	if [[ $job_name = none ]]
319	then
320	job_name=$file_to_send
321	fi
322	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
323	then
324	printf "\n +++ job-file name: "
325	printf "\n $job_name"
326	printf "\n must not contain \"/\"-characters"
327	locat=parameter; exit
328	fi
329
330
331
332
333	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
334	# ODER WENN HOST NICHT ANGEGEBEN WURDE
335	if [[ $remote_host = none ]]
336	then
337	printf "\n +++ host missing"
338	locat=option; exit
339	else
340	case $remote_host in
341	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
342	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
343	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
344	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
345	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
346	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
347	(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
348	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
349	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
350	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
351	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
352	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
353	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
354	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
355	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
356	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
357	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
358	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
359	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
360	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
361	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
362	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
363	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
364	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
365	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
366	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
367	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
368	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
369	locat=parameter; exit;;
370	esac
371	fi
372
373
374	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
375	if [[ $no_default_queue != none ]]
376	then
377	error=false
378	ndq=$no_default_queue
379	case $remote_host in
380	(ibm) case $ndq in
381	(p690_express\|p690_standard\|p690_long) error=false;;
382	(*) error=true;;
383	esac;;
384	(ibmh) case $ndq in
385	(cluster\|express) error=false;;
386	(*) error=true;;
387	esac;;
388	(ibmkisti) case $ndq in
389	(class.32plus\|class.1-2\|class.2-32) error=false;;
390	(*) error=true;;
391	esac;;
392	(ibmku) case $ndq in
393	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
394	(*) error=true;;
395	esac;;
396	(ibms) case $ndq in
397	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
398	(*) error=true;;
399	esac;;
400	(ibmy) case $ndq in
401	(parallel) error=false;;
402	(*) error=true;;
403	esac;;
404	(lccrayb) case $ndq in
405	(mpp1q\|mpp1testq\|testq) error=false;;
406	(*) error=true;;
407	esac;;
408	(lccrayf) case $ndq in
409	(usup\|test*\|small\|large) error=false;;
410	(*) error=true;;
411	esac;;
412	(lcflow) case $ndq in
413	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
414	(*) error=true;;
415	esac;;
416	(lckiaps) case $ndq in
417	(express\|normal) error=false;;
418	(*) error=true;;
419	esac;;
420	(lckyoto) case $ndq in
421	(eh\|ph) error=false;;
422	(*) error=true;;
423	esac;;
424	(lckyuh) case $ndq in
425	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
426	(*) error=true;;
427	esac;;
428	(lckyut) case $ndq in
429	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
430	(*) error=true;;
431	esac;;
432	(lcsgib\|lcsgih) case $ndq in
433	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
434	(*) error=true;;
435	esac;;
436	(lctit) case $ndq in
437	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
438	(*) error=true;;
439	esac;;
440	(t3eb) case $ndq in
441	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
442	(*) error=true;;
443	esac;;
444	(necriam) case $ndq in
445	(SP\|SS\|P6) error=false;;
446	(*) error=true;;
447	esac;;
448	(t3eh) case $ndq in
449	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
450	(*) error=true;;
451	esac;;
452	(t3ej2\|t3ej5) case $ndq in
453	(low\|normal\|high) error=false;;
454	(*) error=true;;
455	esac;;
456	(t3es) case $ndq in
457	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
458	(*) error=true;;
459	esac;;
460	(unics) case $ndq in
461	(unics\|ht) error=false;;
462	(*) error=true;;
463	esac;;
464	esac
465	if [[ $error = true ]]
466	then
467	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
468	locat=parameter; exit
469	else
470	queue=$no_default_queue
471	fi
472	fi
473
474
475
476	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
477	# AUFTEILEN
478	done=false
479	while [[ $done = false ]]
480	do
481	if (( $cputime <= 0 ))
482	then
483	printf "\n +++ wrong cpu-time or cpu-time missing"
484	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
485	printf "\n >>> "
486	read cputime 1>/dev/null 2>&1
487	else
488	done=true
489	fi
490	done
491	if [[ $remote_host = nech ]]
492	then
493	if (( tasks_per_node != 0 ))
494	then
495	(( cputime = cputime * tasks_per_node ))
496	elif [[ $numprocs != 0 ]]
497	then
498	(( cputime = cputime * numprocs ))
499	fi
500	fi
501	(( stunden = cputime / 3600 ))
502	(( resttime = cputime - stunden * 3600 ))
503	(( minuten = resttime / 60 ))
504	(( sekunden = resttime - minuten * 60 ))
505	timestring=${stunden}:${minuten}:${sekunden}
506
507
508
509	# PRUEFEN DER KERNSPEICHERANFORDERUNG
510	done=false
511	while [[ $done = false ]]
512	do
513	if (( memory <= 0 ))
514	then
515	printf "\n +++ wrong memory demand or memory demand missing"
516	printf "\n >>> Please type memory in MByte per process as INTEGER:"
517	printf "\n >>> "
518	read memory 1>/dev/null 2>&1
519	else
520	done=true
521	fi
522	done
523
524	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
525	then
526	if (( tasks_per_node != 0 ))
527	then
528	(( Memory = memory * tasks_per_node / 1000 ))
529	elif [[ $numprocs != 0 ]]
530	then
531	(( Memory = memory * numprocs / 1000 ))
532	else
533	(( Memory = memory / 1000 ))
534	fi
535	elif [[ $remote_host = lctit ]]
536	then
537	(( Memory = memory * tasks_per_node / 1000 ))
538	fi
539
540
541	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
542	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
543	then
544	(( memory = memory * threads_per_task ))
545	fi
546
547
548	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
549	if (( tasks_per_node != 0 ))
550	then
551	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
552	fi
553
554
555	# Calculate number of processes per node
556	(( processes_per_node = tasks_per_node * threads_per_task ))
557
558
559	# Calculate number of MPI tasks
560	(( mpi_tasks = numprocs / threads_per_task ))
561
562
563	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
564	if [[ "$scp_port" != "" ]]
565	then
566	PORTOPT="-P $scp_port"
567	SSH_PORTOPT="-p $scp_port"
568	fi
569
570
571	# HEADER-AUSGABE
572	if [[ $verify = true ]]
573	then
574	printf "\n\n"
575	printf "#--------------------------------------------------------------# \n"
576	spalte1=SUBJOB;spalte2=$(date)
577	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
578	printf "\| \| \n"
579	printf "\| values of parameters/options: \| \n"
580	spalte1=$(echo local_host$punkte \| cut -c-20)
581	spalte2=$punkte$local_host
582	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
583	spalte1=$(echo remote_host$punkte \| cut -c-20)
584	spalte2=$punkte$remote_host
585	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
586	spalte1=$(echo queue$punkte \| cut -c-20)
587	spalte2=$punkte$queue
588	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
589	spalte1=$(echo memory$punkte \| cut -c-20)
590	spalte2="$punkte$memory mb"
591	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
592	spalte1=$(echo cputime$punkte \| cut -c-20)
593	spalte2="$punkte$cputime sec"
594	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
595	spalte1=$(echo job_name$punkte \| cut -c-20)
596	spalte2="$punkte$job_name"
597	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
598	printf "#--------------------------------------------------------------# \n\n"
599
600
601	# KONTROLLABFRAGE, OB ALLES O.K.
602	antwort="dummy"
603	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
604	do
605	read antwort?" >>> continue (y/n) ? "
606	done
607	if [[ $antwort = n \|\| $antwort = N ]]
608	then
609	locat=verify; exit
610	fi
611	printf "\n"
612	fi
613
614
615
616	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
617	kennung=$RANDOM
618	job_on_remhost=${job_name}_${kennung}_$local_host
619	job_to_send=job_to_send_$kennung
620	if [[ $delete_dayfile = false ]]
621	then
622	remote_dayfile=${local_host}_${job_name}_result_$kennung
623	local_dayfile=${remote_host}_${job_name}
624	else
625	remote_dayfile=/dev/null
626	fi
627
628
629
630	# Generate the batch job scripts (qsub/msub/LoadLeveler)
631	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
632	then
633
634	# General LoadLeveler settings
635	execute_in_shell="#!/bin/ksh"
636	use_shell="# @ shell = /bin/ksh"
637	consumable_memory="ConsumableMemory($memory mb)"
638	class="# @ class = $queue"
639	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
640	network_to_use="# @ network.mpi = sn_all,shared,us"
641	data_limit="# @ data_limit = 1.76gb"
642	image_size="# @ image_size = 50"
643	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
644
645	if [[ $email_notification = none ]]
646	then
647	notify_user=""
648	else
649	notify_user="# @ notify_user = $email_notification"
650	if [[ $delete_dayfile = true ]]
651	then
652	notification='# @ notification = never'
653	fi
654	fi
655
656	if [[ $remote_host = ibmh ]]
657	then
658	data_limit=""
659	network_to_use=""
660	class="# @ class = $queue"
661	environment=""
662	rset="# @ rset = RSET_MCM_AFFINITY"
663	task_affinity="# @ task_affinity = core(1)"
664	elif [[ $remote_host = ibmkisti ]]
665	then
666	network_to_use="# @ network.MPI = sn_all,shared,US"
667	wall_clock_limit="# @ wall_clock_limit = $timestring"
668	if [[ $threads_per_task = 1 ]]
669	then
670	rset="# @ rset = RSET_MCM_AFFINITY"
671	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
672	fi
673	environment=""
674	use_shell=""
675	data_limit=""
676	image_size=""
677	elif [[ $remote_host = ibmku ]]
678	then
679	execute_in_shell="#!/usr/bin/ksh"
680	use_shell="# @ shell = /usr/bin/ksh"
681	consumable_memory=""
682	environment=""
683	network_to_use="# @ network.mpi = sn_all,shared,us"
684	data_limit=""
685	image_size=""
686	elif [[ $remote_host = ibms ]]
687	then
688	network_to_use="# @ network.mpi = csss,shared,us"
689	elif [[ $remote_host = ibmy ]]
690	then
691	consumable_memory=""
692	network_to_use=""
693	fi
694
695	cat > $job_to_send << %%END%%
696	$execute_in_shell
697	$use_shell
698
699	# @ job_type = parallel
700	# @ job_name = $job_name
701	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
702	# @ output = $remote_dayfile
703	# @ error = $remote_dayfile
704	$wall_clock_limit
705	$image_size
706	$class
707	$environment
708	$network_to_use
709	$data_limit
710	$rset
711	$mcm_affinity_options
712	$task_affinity
713	$notification
714	$notify_user
715
716	%%END%%
717
718	if (( nodes > 0 ))
719	then
720
721	if [[ $remote_host != ibmkisti ]]
722	then
723
724	cat >> $job_to_send << %%END%%
725	# @ node = $nodes
726	# @ tasks_per_node = $processes_per_node
727	# @ node_usage = $node_usage
728	# @ queue
729
730	%%END%%
731
732	else
733
734	cat >> $job_to_send << %%END%%
735	# @ total_tasks = $mpi_tasks
736	# @ blocking = unlimited
737	# @ queue
738
739	%%END%%
740
741	fi
742
743	else
744
745	if [[ $remote_host != ibmy ]]
746	then
747
748	cat >> $job_to_send << %%END%%
749	# @ blocking = unlimited
750	# @ total_tasks = $numprocs
751	# @ node_usage = $node_usage
752	# @ queue
753
754	%%END%%
755
756	else
757
758	cat >> $job_to_send << %%END%%
759	# @ node = 1
760	# @ total_tasks = $numprocs
761	# @ queue
762
763	%%END%%
764
765	fi
766
767	fi
768
769	# workaround because of silly job filter on ibmkisti
770	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
771	then
772	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
773	fi
774
775	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
776	then
777
778	cat > $job_to_send << %%END%%
779	#!/bin/ksh
780
781	# @ job_type = serial
782	# @ node_usage = $node_usage
783	# @ job_name = palm
784	# @ wall_clock_limit = ${timestring},$timestring
785	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
786	# @ output = $remote_dayfile
787	# @ error = $remote_dayfile
788	$class
789	$notification
790
791	# @ queue
792
793	%%END%%
794
795	elif [[ $remote_host = lccrayb ]]
796	then
797
798	if [[ $numprocs != 0 ]]
799	then
800	cat > $job_to_send << %%END%%
801	#!/bin/bash
802	#PBS -N $job_name
803	#PBS -l walltime=$timestring
804	#PBS -l nodes=$nodes:ppn=$processes_per_node
805	#PBS -o $remote_dayfile
806	#PBS -j oe
807	#PBS -q $queue
808
809	$module_calls
810
811	%%END%%
812
813	else
814
815	continue
816
817	fi
818
819	elif [[ $remote_host = lccrayf ]]
820	then
821
822	if [[ $numprocs != 0 ]]
823	then
824	cat > $job_to_send << %%END%%
825	#!/bin/bash -l
826	#SBATCH -J $job_name
827	#SBATCH -t $timestring
828	#SBATCH -N $nodes
829	#SBATCH --ntasks-per-node=$processes_per_node
830	#SBATCH -p $queue
831	#SBATCH -o $remote_dayfile
832	#SBATCH -e $remote_dayfile
833
834	$init_cmds
835	$module_calls
836
837	%%END%%
838
839	else
840	cat > $job_to_send << %%END%%
841	#!/bin/bash -l
842	#SBATCH -J $job_name
843	#SBATCH -t $timestring
844	#SBATCH -l ncpus=1
845	#SBATCH -l pmem=${memory}mb
846	#SBATCH -m abe
847	#SBATCH -o $remote_dayfile
848	#SBATCH -e $remote_dayfile
849
850	$init_cmds
851	$module_calls
852
853	%%END%%
854
855	fi
856
857	elif [[ $remote_host = lcfimm ]]
858	then
859
860	if [[ $numprocs != 0 ]]
861	then
862	cat > $job_to_send << %%END%%
863	#!/bin/ksh
864	#PBS -N $job_name
865	#PBS -A $project_account
866	#PBS -l walltime=$timestring
867	#PBS -l nodes=${nodes}:ppn=$processes_per_node
868	#PBS -l pmem=${memory}mb
869	#PBS -m abe
870	#PBS -o $remote_dayfile
871	#PBS -j oe
872	mpd &
873
874	%%END%%
875
876	else
877	cat > $job_to_send << %%END%%
878	#!/bin/ksh
879	#PBS -N $job_name
880	#PBS -A $project_account
881	#PBS -l walltime=$timestring
882	#PBS -l ncpus=1
883	#PBS -l pmem=${memory}mb
884	#PBS -m abe
885	#PBS -o $remote_dayfile
886	#PBS -j oe
887
888	%%END%%
889
890	fi
891
892	elif [[ $remote_host = lcflow ]]
893	then
894	if [ $memory -gt 1800 ]; then
895	use_himem=""
896	else
897	use_himem="#"
898	fi
899	if [[ $numprocs != 0 ]]
900	then
901	pe_set="#$ -pe impi41 $numprocs"
902	else
903	pe_set="#$ -pe impi41 1"
904	fi
905	if [[ $queue = default ]]
906	then
907	queue_set=""
908	else
909	queue_set="#$ -q $queue"
910	fi
911	[[ "$disc_space" = "" ]] && disc_space=50
912
913	cat > $job_to_send << %%END%%
914	#!/bin/bash
915	#$ -S /bin/bash
916	#$ -N $job_name
917	#$ -cwd
918	#$ -l h_rt=$timestring
919	#$ -l h_vmem=${memory}M
920	#$ -o $remote_dayfile
921	#$ -j y
922	$pe_set
923	#$ -R y
924	${use_himem}#$ -l highmem=true
925	#$ -l h_fsize=${disc_space}G
926	$queue_set
927
928	%%END%%
929
930	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
931	then
932
933	if [[ $numprocs != 0 ]]
934	then
935	cat > $job_to_send << %%END%%
936	#!/bin/ksh
937	#PBS -N $job_name
938	#PBS -l walltime=$timestring
939	#PBS -l ncpus=$numprocs
940	#PBS -l pmem=${memory}mb
941	#PBS -o $remote_dayfile
942	#PBS -l nodes=$nodes:ppn=${processes_per_node}
943	#PBS -j oe
944
945	mpd &
946
947	%%END%%
948
949	else
950	cat > $job_to_send << %%END%%
951	#!/bin/ksh
952	#PBS -N $job_name
953	#PBS -l walltime=$timestring
954	#PBS -l ncpus=1
955	#PBS -l pmem=${memory}mb
956	#PBS -o $remote_dayfile
957	#PBS -j oe
958
959	%%END%%
960
961	fi
962
963	elif [[ $remote_host = lckiaps ]]
964	then
965
966	if [[ $numprocs != 0 ]]
967	then
968	cat > $job_to_send << %%END%%
969	#!/bin/ksh
970	#PBS -N $job_name
971	#PBS -l walltime=$timestring
972	#PBS -l select=1:ncpus=$numprocs
973	#PBS -l pmem=${memory}mb
974	#PBS -q $queue
975	#PBS -o $remote_dayfile
976	#PBS -j oe
977	#PBS -V
978
979	%%END%%
980
981	else
982	cat > $job_to_send << %%END%%
983	#!/bin/ksh
984	#PBS -N $job_name
985	#PBS -l walltime=$timestring
986	#PBS -l ncpus=1
987	#PBS -l pmem=${memory}mb
988	#PBS -o $remote_dayfile
989	#PBS -j oe
990
991	%%END%%
992
993	fi
994
995	elif [[ $remote_host = lcyon ]]
996	then
997
998	if [[ $numprocs != 0 ]]
999	then
1000	cat > $job_to_send << %%END%%
1001	#!/bin/ksh
1002	#PBS -N $job_name
1003	#PBS -l walltime=$timestring
1004	#PBS -l ncpus=$numprocs
1005	#PBS -l pmem=${memory}mb
1006	#PBS -o $remote_dayfile
1007	#PBS -j oe
1008
1009	%%END%%
1010
1011	else
1012	cat > $job_to_send << %%END%%
1013	#!/bin/ksh
1014	#PBS -N $job_name
1015	#PBS -l walltime=$timestring
1016	#PBS -l ncpus=1
1017	#PBS -l pmem=${memory}mb
1018	#PBS -o $remote_dayfile
1019	#PBS -j oe
1020
1021	%%END%%
1022
1023	fi
1024
1025	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1026	then
1027
1028	if [[ "$sgi_feature" != "" ]]
1029	then
1030	feature_directive="#PBS -l feature=$sgi_feature"
1031	else
1032	feature_directive=""
1033	fi
1034
1035	if [[ $queue = dataq \|\| $queue = permq ]]
1036	then
1037	feature_directive="#PBS -l feature=data"
1038	fi
1039
1040	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
1041	then
1042	queue_directive="#PBS -q $queue"
1043	else
1044	queue_directive=""
1045	fi
1046
1047	if [[ $email_notification = none ]]
1048	then
1049	email_directive=""
1050	else
1051	email_directive="#PBS -M $email_notification"
1052	fi
1053
1054	if [[ $numprocs != 0 ]]
1055	then
1056	cat > $job_to_send << %%END%%
1057	#!/bin/bash
1058	#PBS -N $job_name
1059	#PBS -l walltime=$timestring
1060	#PBS -l nodes=$nodes:ppn=${processes_per_node}
1061	#PBS -l naccesspolicy=$node_usage
1062	#PBS -o $remote_dayfile
1063	#PBS -j oe
1064	$feature_directive
1065	$queue_directive
1066	$email_directive
1067
1068	eval \`/sw/swdist/bin/modulesinit\`
1069	#. /usr/share/modules/init/bash
1070	$init_cmds
1071	$module_calls
1072
1073	echo ld_library_path=\$LD_LIBRARY_PATH
1074
1075	%%END%%
1076
1077	else
1078	cat > $job_to_send << %%END%%
1079	#PBS -S /bin/bash
1080	#PBS -N $job_name
1081	#PBS -l walltime=$timestring
1082	#PBS -l ncpus=1
1083	#PBS -o $remote_dayfile
1084	#PBS -j oe
1085	$queue_directive
1086	$email_directive
1087
1088	eval \`/sw/swdist/bin/modulesinit\`
1089	#. /usr/share/modules/init/bash
1090	$init_cmds
1091	$module_calls
1092
1093	%%END%%
1094
1095	fi
1096
1097	elif [[ $remote_host = lcxe6 ]]
1098	then
1099
1100	if [[ $numprocs != 0 ]]
1101	then
1102	cat > $job_to_send << %%END%%
1103	#!/bin/ksh
1104	#PBS -S /bin/ksh
1105	#PBS -N $job_name
1106	#PBS -A $project_account
1107	#PBS -j oe
1108	#PBS -l walltime=$timestring
1109	#PBS -l mppwidth=${numprocs}
1110	#PBS -l mppnppn=${processes_per_node}
1111	#PBS -m abe
1112	#PBS -o $remote_dayfile
1113	$email_directive
1114
1115	$init_cmds
1116	$module_calls
1117
1118	%%END%%
1119
1120	else
1121	cat > $job_to_send << %%END%%
1122	#!/bin/ksh
1123	#PBS -S /bin/ksh
1124	#PBS -N $job_name
1125	#PBS -A $project_account
1126	#PBS -j oe
1127	#PBS -l walltime=$timestring
1128	#PBS -l ncpus=1
1129	#PBS -l pmem=${memory}mb
1130	#PBS -m abe
1131	$email_directive
1132	#PBS -o $remote_dayfile
1133
1134	$init_cmds
1135	$module_calls
1136
1137	%%END%%
1138
1139	fi
1140
1141	elif [[ $remote_host = lckyoto ]]
1142	then
1143
1144	cat > $job_to_send << %%END%%
1145	#!/bin/ksh
1146	# @\$-o $remote_dayfile
1147	# @\$-eo -oi
1148	# @\$-lP 16
1149	# @\$-lp 1
1150	# @\$-lm 28gb -llm unlimited -ls unlimited
1151	# @\$-q $queue
1152	# @\$-Pvn abs_pack
1153	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1154	#. /thin/local/etc/setprofile/intel-11.0.sh
1155	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1156	. ~/.myprofile
1157	#. /home2/t/t51254/palm/current_version/myprofile
1158	#. /thin/apps/pgi/mpi.sh
1159	#
1160	env
1161	#
1162	set -x
1163
1164	%%END%%
1165
1166	elif [[ $remote_host = lcxt5m ]]
1167	then
1168
1169	if [[ $numprocs != 0 ]]
1170	then
1171	cat > $job_to_send << %%END%%
1172	#!/bin/ksh
1173	#PBS -S /bin/ksh
1174	#PBS -N $job_name
1175	#PBS -j oe
1176	#PBS -l walltime=$timestring
1177	#PBS -l mppwidth=${numprocs}
1178	#PBS -l mppnppn=${processes_per_node}
1179	#PBS -m abe
1180	#PBS -o $remote_dayfile
1181
1182	$init_cmds
1183	$module_calls
1184
1185	%%END%%
1186
1187	else
1188	cat > $job_to_send << %%END%%
1189	#!/bin/ksh
1190	#PBS -S /bin/ksh
1191	#PBS -N $job_name
1192	#PBS -j oe
1193	#PBS -l walltime=$timestring
1194	#PBS -l ncpus=1
1195	#PBS -l pmem=${memory}mb
1196	#PBS -m abe
1197	#PBS -o $remote_dayfile
1198
1199	$init_cmds
1200	$module_calls
1201
1202	%%END%%
1203
1204	fi
1205
1206	elif [[ $remote_host = lckyuh ]]
1207	then
1208	cat > $job_to_send << %%END%%
1209	#!/bin/bash
1210	#PJM -L "rscgrp=$queue"
1211	#PJM -L "node=$nodes"
1212	#PJM --mpi "proc=$numprocs"
1213	#PJM -L "elapse=$timestring"
1214	#PJM -o $remote_dayfile
1215	#PJM -j
1216	#PJM -X
1217	#PJM --no-stging
1218
1219	export LANG=en_US.UTF-8
1220	%%END%%
1221
1222	elif [[ $remote_host = lckyut ]]
1223	then
1224	cat > $job_to_send << %%END%%
1225	#!/bin/bash
1226	#PJM -L "rscgrp=$queue"
1227	#PJM -L "vnode=$numprocs"
1228	#PJM -L "vnode-core=1"
1229	#PJM -L "elapse=$timestring"
1230	#PJM --mpi proc=$numprocs
1231	#PJM -o $remote_dayfile
1232	#PJM -j
1233	#PJM -X
1234	#PJM --no-stging
1235
1236	export LANG=en_US.UTF-8
1237	%%END%%
1238
1239	elif [[ $remote_host = nech ]]
1240	then
1241
1242	if (( nodes > 1 ))
1243	then
1244	cat > $job_to_send << %%END%%
1245	#!/bin/ksh
1246	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1247	#PBS -l ${qsubmem}=${Memory}gb
1248	#PBS -b $nodes
1249	#PBS -o $remote_dayfile
1250	#PBS -N palm
1251	#PBS -j o
1252	#PBS -T mpisx
1253
1254	%%END%%
1255
1256	elif [[ $numprocs != 0 ]]
1257	then
1258	cat > $job_to_send << %%END%%
1259	#!/bin/ksh
1260	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1261	#PBS -l ${qsubmem}=${Memory}gb
1262	#PBS -o $remote_dayfile
1263	#PBS -N palm
1264	#PBS -j o
1265
1266	%%END%%
1267
1268	else
1269	cat > $job_to_send << %%END%%
1270	#!/bin/ksh
1271	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1272	#PBS -o $remote_dayfile
1273	#PBS -j o
1274
1275	%%END%%
1276
1277	fi
1278
1279	elif [[ $remote_host = necriam ]]
1280	then
1281
1282	if (( nodes > 1 ))
1283	then
1284	cat > $job_to_send << %%END%%
1285	#!/bin/ksh
1286	#PBS -b $nodes
1287	#PBS -o $remote_dayfile
1288	#PBS -N $job_name
1289	#PBS -j o
1290	#PBS -v MPIPROGINV=YES
1291
1292	%%END%%
1293
1294	elif [[ $numprocs != 0 ]]
1295	then
1296	cat > $job_to_send << %%END%%
1297	#!/bin/ksh
1298	#PBS -q ${queue}
1299	#PBS -o $remote_dayfile
1300	#PBS -N $job_name
1301	#PBS -j o
1302	#PBS -v MPIPROGINV=YES
1303
1304	%%END%%
1305
1306	else
1307	cat > $job_to_send << %%END%%
1308	#!/bin/ksh
1309	#PBS -o $remote_dayfile
1310	#PBS -j o
1311
1312	%%END%%
1313
1314	fi
1315
1316	elif [[ $remote_host = lctit ]]
1317	then
1318	cat > $job_to_send << %%END%%
1319	#!/bin/ksh
1320	$init_cmds
1321	$module_calls
1322
1323	%%END%%
1324
1325	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1326	if [[ $tasks_per_node != $processes_per_node ]]
1327	then
1328	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1329	else
1330	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1331	fi
1332
1333	else
1334
1335	cat > $job_to_send << %%END%%
1336	# @\$-q ${queue}
1337	# @\$-l${qsubtime} $timestring
1338	# @\$-l${qsubmem} ${memory}mb
1339	# @\$-o $remote_dayfile
1340	# @\$-eo
1341
1342	%%END%%
1343
1344	fi
1345
1346
1347	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1348	# BEI EXIT VERANLASSEN
1349	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1350	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1351	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1352	then
1353	echo "set +vx" >> $job_to_send
1354	echo "trap '" >> $job_to_send
1355	echo "set +vx" >> $job_to_send
1356	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1357	then
1358	if [[ $remote_host = ibmh ]]
1359	then
1360	return_queue=c1
1361	elif [[ $remote_host = ibmkisti ]]
1362	then
1363	return_queue=class.1-2
1364	elif [[ $remote_host = ibmku ]]
1365	then
1366	return_queue=sdbg2
1367	elif [[ $remote_host = ibms ]]
1368	then
1369	return_queue=p_normal
1370	elif [[ $remote_host = ibmy ]]
1371	then
1372	return_queue=serial
1373	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1374	then
1375	return_queue=serialq
1376	elif [[ $remote_host = necriam ]]
1377	then
1378	return_queue=SP
1379	elif [[ $remote_host = lccrayb ]]
1380	then
1381	return_queue=dataq
1382	elif [[ $remote_host = lckiaps ]]
1383	then
1384	return_queue=express
1385	elif [[ $remote_host = lckyuh ]]
1386	then
1387	return_queue=cx-single
1388	elif [[ $remote_host = lckyut ]]
1389	then
1390	return_queue=cx-single
1391	else
1392	return_queue=unknown
1393	fi
1394
1395	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1396	then
1397
1398	if [[ $remote_host = ibmku ]]
1399	then
1400	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1401	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1402	else
1403	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1404	fi
1405	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1406	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1407	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1408	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1409	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1410	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1411	if [[ $host != "ibmh" ]]
1412	then
1413	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1414	fi
1415	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1416	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1417
1418	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1419	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1420
1421	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1422	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1423	if [[ $remote_host = ibmku ]]
1424	then
1425	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1426	fi
1427	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1428
1429	elif [[ $remote_host = nech ]]
1430	then
1431	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1432	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1433	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1434	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1435	echo "#PBS -j o" >> $job_to_send
1436	echo " " >> $job_to_send
1437	echo "set -x" >> $job_to_send
1438	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1439	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1440	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1441	echo "%%END%%" >> $job_to_send
1442
1443	elif [[ $remote_host = necriam ]]
1444	then
1445	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1446	echo "#PBS -q $return_queue" >> $job_to_send
1447	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1448	echo "#PBS -j o" >> $job_to_send
1449	echo " " >> $job_to_send
1450	echo "set -x" >> $job_to_send
1451	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1452	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1453	echo "%%END%%" >> $job_to_send
1454
1455	elif [[ $remote_host = lckyuh ]]
1456	then
1457	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1458	echo "#!/bin/bash" >> $job_to_send
1459	echo "#PJM -L \"node=1\"" >> $job_to_send
1460	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1461	echo "#PJM --no-stging" >> $job_to_send
1462	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1463	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1464	echo "#PJM -j" >> $job_to_send
1465	echo " " >> $job_to_send
1466	echo "export LANG=en_US.UTF-8" >> $job_to_send
1467	echo "set -x" >> $job_to_send
1468	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1469	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1470	echo "%%END%%" >> $job_to_send
1471
1472	elif [[ $remote_host = lckyut ]]
1473	then
1474	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1475	echo "#!/bin/bash" >> $job_to_send
1476	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1477	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1478	echo "#PJM --no-stging" >> $job_to_send
1479	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1480	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1481	echo "#PJM -j" >> $job_to_send
1482	echo " " >> $job_to_send
1483	echo "export LANG=en_US.UTF-8" >> $job_to_send
1484	echo "set -x" >> $job_to_send
1485	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1486	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1487	echo "%%END%%" >> $job_to_send
1488
1489	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1490	then
1491	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1492	echo "#!/bin/bash" >> $job_to_send
1493	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1494	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1495	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1496	echo "#PBS -l feature=data" >> $job_to_send
1497	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1498	echo "#PBS -j oe" >> $job_to_send
1499	echo " " >> $job_to_send
1500	echo ". /usr/share/modules/init/bash" >> $job_to_send
1501	echo "set -x" >> $job_to_send
1502	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1503	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1504	echo "%%END%%" >> $job_to_send
1505
1506	elif [[ $remote_host = lccrayb ]]
1507	then
1508	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1509	echo "#!/bin/bash" >> $job_to_send
1510	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1511	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1512	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1513	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1514	echo "#PBS -j oe" >> $job_to_send
1515	echo " " >> $job_to_send
1516	echo "set -x" >> $job_to_send
1517	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1518	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1519	echo "%%END%%" >> $job_to_send
1520
1521	elif [[ $remote_host = lcflow ]]
1522	then
1523	echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
1524	echo "#!/bin/bash" >> $job_to_send
1525	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1526	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1527	echo "SGEPREFIX -cwd" >> $job_to_send
1528	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1529	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1530	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1531	echo "SGEPREFIX -j y" >> $job_to_send
1532	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
1533	echo " " >> $job_to_send
1534	echo "set -x" >> $job_to_send
1535	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1536	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1537	echo "" >> $job_to_send
1538	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1539	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1540	echo "rm -f scpjob.${kennung}" >> $job_to_send
1541	echo "%%END%%" >> $job_to_send
1542	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
1543	echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
1544
1545	else
1546
1547	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1548	echo "# @\\\$-q $return_queue" >> $job_to_send
1549	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1550	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1551	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1552	then
1553	echo "# @\$-l mpp_p=0" >> $job_to_send
1554	fi
1555	echo '# @\$-lF 10mb' >> $job_to_send
1556	# echo '# @\$-o /dev/null' >> $job_to_send
1557	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1558	echo '# @\\\$-eo' >> $job_to_send
1559	echo " " >> $job_to_send
1560	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1561	then
1562	echo "set +vx" >> $job_to_send
1563	echo ". .profile" >> $job_to_send
1564	fi
1565	echo "set -x" >> $job_to_send
1566	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1567	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1568	echo "%%END%%" >> $job_to_send
1569	fi
1570
1571	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1572	then
1573	echo "llsubmit scpjob.$kennung" >> $job_to_send
1574	elif [[ $remote_host = lccrayb ]]
1575	then
1576	echo "msub -q $return_queue scpjob.$kennung" >> $job_to_send
1577	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1578	then
1579	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1580	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1581	echo "msub scpjob.$kennung" >> $job_to_send
1582	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1583	then
1584	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1585	elif [[ $remote_host = t3es ]]
1586	then
1587	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1588	elif [[ $remote_host = lckiaps ]]
1589	then
1590	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1591	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1592	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1593	elif [[ $remote_host = lckyu* ]]
1594	then
1595	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1596	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1597	elif [[ $remote_host = lcflow ]]
1598	then
1599	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1600	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
1601	else
1602	echo "$submcom scpjob.$kennung" >> $job_to_send
1603	fi
1604	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1605	then
1606	echo "rm scpjob.$kennung" >> $job_to_send
1607	fi
1608	if [[ $remote_host = nech ]]
1609	then
1610	echo "cd -" >> $job_to_send
1611	fi
1612	else
1613	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1614	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1615	fi
1616	echo "set -x" >> $job_to_send
1617	echo " ' exit" >> $job_to_send
1618	echo "set -x" >> $job_to_send
1619	fi
1620
1621
1622
1623	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1624	cat $file_to_send >> $job_to_send
1625
1626	if [[ $remote_host = ibm ]]
1627	then
1628	echo " " >> $job_to_send
1629	echo "exit" >> $job_to_send
1630	fi
1631
1632	# remove job file
1633	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1634	then
1635	echo " " >> $job_to_send
1636	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1637	fi
1638
1639
1640
1641	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1642	if [[ -z $remote_user ]]
1643	then
1644	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1645	then
1646	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1647	fi
1648	fi
1649
1650
1651
1652	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1653	if [[ $no_submit = false ]]
1654	then
1655	if [[ $remote_host != $local_host ]]
1656	then
1657	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1658	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1659	then
1660	job_catalog_save=$job_catalog
1661	job_catalog=job_queue
1662	elif [[ $remote_host = nech ]]
1663	then
1664	job_catalog_save=$job_catalog
1665	job_catalog=/hpf/b/${remote_user}/job_queue
1666	fi
1667	if [[ $remote_host = nech ]]
1668	then
1669	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1670	# TRANSFERIERT WERDEN
1671	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1672	else
1673	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1674	fi
1675	if [[ $? = 1 ]]
1676	then
1677	locat=scp; exit
1678	fi
1679	if [[ $remote_host = ibms ]]
1680	then
1681	job_catalog=$job_catalog_save
1682	fi
1683	[[ $verify = true ]] && printf "\n >>> finished\n"
1684	else
1685	eval job_catalog=$job_catalog
1686	cp $job_to_send ${job_catalog}/$job_on_remhost
1687	fi
1688
1689
1690
1691	# NQS- BZW. LOADLEVELER-JOB STARTEN
1692	if [[ $remote_host != $local_host ]]
1693	then
1694	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1695
1696	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1697	then
1698	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1699	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1700	elif [[ $remote_host = ibmku ]]
1701	then
1702	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1703	elif [[ $remote_host = lcflow ]]
1704	then
1705	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1706	else
1707	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1708	fi
1709
1710	[[ $verify = true ]] && printf " >>> o.k.\n"
1711	else
1712	cd $job_catalog
1713	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1714	then
1715	eval $submcom $job_on_remhost
1716	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1717	then
1718	chmod u+x $job_on_remhost
1719	eval $submcom $job_on_remhost
1720	elif [[ $local_host = nech ]]
1721	then
1722	if [[ $queue = default ]]
1723	then
1724	eval $submcom $job_on_remhost
1725	else
1726	eval $submcom -q $queue $job_on_remhost
1727	fi
1728	else
1729	qsub $job_on_remhost
1730	fi
1731
1732	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1733	# only at the end of the job.
1734	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1735	then
1736	rm $job_on_remhost
1737	fi
1738	cd - > /dev/null
1739	fi
1740	fi
1741
1742
1743
1744	# ABSCHLUSSARBEITEN
1745
1746	if [[ $no_submit = false ]]
1747	then
1748	rm -f $job_to_send
1749	fi
1750	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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