Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 742

Last change on this file since 742 was 739, checked in by raasch, 13 years ago
hicegate0 added
Property svn:keywords set to `Id Rev`
File size: 49.4 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[169]	3	# $Id: subjob 739 2011-08-17 14:52:41Z raasch $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[108]	85	# 03/08/07 - Marcus- lcfimm admitted
[113]	86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
[118]	87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
	88	# suggestions
[122]	89	# 19/10/07 - Marcus- add new optional argument -g group_number
[125]	90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
[129]	91	# 30/10/07 - Marcus- further adjustments for queues on lctit
[164]	92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
	93	# Science)
[179]	94	# 14/07/08 - Siggi - adjustments for lcsgih
[205]	95	# 23/09/08 - Gerald- paesano admitted
[206]	96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
[251]	97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
[292]	98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
[312]	99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
[325]	100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
[343]	101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
[352]	102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
[366]	103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
	104	# now run on the data nodes (feature=data)
[367]	105	# 25/08/09 - BjornM- adapted for lck
[372]	106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
[376]	107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
	108	# set in the config file by the user
[416]	109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
	110	# adding special1q
[407]	111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
[416]	112	# 16/10/09 - Carolin-adding permq
[440]	113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	114	# 03/02/10 - Siggi - bug in serial jobs removed
[492]	115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
	116	# notification)
[493]	117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
	118	# module_calls
[551]	119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
	120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
[552]	121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
	122	# lcxt4
[622]	123	# 08/12/10 - Siggi - initialization of the module command changed for
	124	# SGI-ICE/lcsgi
	125	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	126	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	127	# institute of technology (lctit)
[678]	128	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
[693]	129	# 06/03/11 - Siggi - adjustments for ibmkisti
[696]	130	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
[717]	131	# 03/04/11 - Micha - added lckordi
[739]	132	# 17/08/11 - Siggi - hicegate0 added
[1]	133
[437]	134
[552]	135
[1]	136	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	137	delete_dayfile=false
	138	email_notification=none
[122]	139	group_number=none
[1]	140	locat=normal
	141	no_default_queue=none
	142	no_submit=false
	143	job_catalog="~/job_queue"
	144	job_name=none
	145	local_user=$LOGNAME
	146	node_usage=shared
[475]	147	numprocs=0
[1]	148	punkte="..........................................................."
	149	submcom=qsub
	150	queue=default
	151	remote_host=none
	152	remote_user=""
	153	verify=true
	154
	155	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	156	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	157	typeset -L20 spalte1
	158	typeset -R40 spalte2
	159	typeset -L60 spalte3
	160
	161
	162
	163	# FEHLERBEHANDLUNG
	164	# BEI EXIT:
	165	trap 'if [[ $locat != normal ]]
	166	then
	167	case $locat in
	168	(option) printf "\n --> available optios can be displayed"
	169	printf " by typing:"
	170	printf "\n \"subjob ?\" \n";;
	171	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	172	(*) printf "\n +++ unknown error"
	173	printf "\n please inform S. Raasch!\n"
	174	esac
	175	[[ -f $job_to_send ]] && rm $job_to_send
	176	printf "\n\n+++ SUBJOB killed \n\n"
	177	fi' exit
	178
	179
	180	# BEI TERMINAL-BREAK:
	181	trap '[[ -f $job_to_send ]] && rm $job_to_send
	182	printf "\n\n+++ SUBJOB killed \n\n"
	183	exit
	184	' 2
	185
	186
	187
	188
	189	# LOKALEN HOSTNAMEN FESTSTELLEN
	190	local_host=$(hostname)
	191
	192
	193
	194	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	195	# UEBERHAUPT ZULAESSIG IST
[717]	196	# Note: One of the entries for "lck" or "lckordi" always has to be
	197	# comment out, because the hostname (node*) is same for both machines
[1]	198	case $local_host in
	199	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	200	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	201	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	202	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	203	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	204	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	205	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	206	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	207	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[12]	208	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[292]	209	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[372]	210	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[693]	211	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
[108]	212	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	213	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	214	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	215	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	216	(node*) local_addres=165.132.26.61 local_host=lck;;
[717]	217	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
[693]	218	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
[101]	219	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	220	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	221	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	222	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	223	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[164]	224	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
[400]	225	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	226	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	227	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	228	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[739]	229	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
[292]	230	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	231	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	232	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[312]	233	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[5]	234	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	235	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	236	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	237	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	238	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[164]	239	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
[1]	240	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	241	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	242	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	243	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[5]	244	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[622]	245	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
[1]	246	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	247	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	248	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	249	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	250	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[635]	251	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
[1]	252	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
[622]	253	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
[1]	254	(*) printf "\n +++ \"$local_host\" unknown";
	255	printf "\n please inform S. Raasch!";
	256	locat=parameter; exit;;
	257	esac
	258
	259
	260
	261	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	262	remote_host=$local_host
	263
	264
	265
	266
	267	# PROZEDUROPTIONEN EINLESEN
[352]	268	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
[1]	269	do
	270	case $option in
	271	(c) job_catalog=$OPTARG;;
	272	(d) delete_dayfile=true;;
	273	(D) no_submit=true;;
[352]	274	(e) email_notification=$OPTARG;;
[125]	275	(g) group_number=$OPTARG;;
[1]	276	(h) remote_host=$OPTARG;;
	277	(m) memory=$OPTARG;;
	278	(n) job_name=$OPTARG;;
	279	(N) node_usage=$OPTARG;;
	280	(O) threads_per_task=$OPTARG;;
	281	(q) no_default_queue=$OPTARG;;
	282	(t) cputime=$OPTARG;;
	283	(T) tasks_per_node=$OPTARG;;
	284	(u) remote_user=$OPTARG;;
	285	(v) verify=false;;
	286	(X) numprocs=$OPTARG;;
	287	(\?) printf "\n +++ Option $OPTARG unknown \n";
	288	locat=option; exit;;
	289	esac
	290	done
	291
	292
	293	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	294	shift OPTIND-1; file_to_send=$1
	295
	296
	297	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	298	if [ "$1" = "?" ]
	299	then
	300	(printf "\n *** subjob can be called as follows:\n"
	301	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	302	printf "\n Description of available options:\n"
	303	printf "\n Option Description Default-Value"
	304	printf "\n -c job-input- and output-catalog ~/job_queue"
	305	printf "\n -d no job-protocol will be created ---"
	306	printf "\n -D only the job-file will be created ---"
	307	printf "\n -h execution host, available hosts: $remote_host"
[693]	308	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
[251]	309	printf "\n lctit, nech, necriam, unics"
[1]	310	printf "\n -m memory demand per process in MByte ---"
	311	printf "\n -n jobname <jobdatei>"
	312	printf "\n -O threads per task (for OpenMP usage) 1"
	313	printf "\n -q job-queue to be used default"
	314	printf "\n -t allowed cpu-time in seconds ---"
	315	printf "\n -T tasks per node (on parallel hosts) ---"
	316	printf "\n -u username on execution host from .netrc"
	317	printf "\n -v no prompt for confirmation ---"
	318	printf "\n -X # of processors (on parallel hosts) 1"
	319	printf "\n "
	320	printf "\n The only possible positional parameter is <jobfile>:"
	321	printf "\n The complete NQS-job must be provided here."
	322	printf "\n <jobfile>=? creates this outline\n\n") \| more
	323	exit
	324	fi
	325
	326
	327
	328	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	329	if [[ "$file_to_send" = "" ]]
	330	then
	331	printf "\n +++ job-file missing"
	332	locat=parameter; exit
	333	else
	334	if [[ -f $file_to_send ]]
	335	then
	336	true
	337	else
	338	printf "\n +++ job-file: "
	339	printf "\n $file_to_send"
	340	printf "\n does not exist"
	341	locat=parameter; exit
	342	fi
	343	fi
	344
	345
	346
	347	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	348	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	349	if [[ $job_name = none ]]
	350	then
	351	job_name=$file_to_send
	352	fi
	353	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	354	then
	355	printf "\n +++ job-file name: "
	356	printf "\n $job_name"
	357	printf "\n must not contain \"/\"-characters"
	358	locat=parameter; exit
	359	fi
	360
	361
	362
	363
	364	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	365	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	366	if [[ $remote_host = none ]]
	367	then
	368	printf "\n +++ host missing"
	369	locat=option; exit
	370	else
	371	case $remote_host in
[251]	372	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	373	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[693]	374	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[622]	375	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
[251]	376	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	377	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	378	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	379	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[540]	380	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
	381	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
[367]	382	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[717]	383	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
[635]	384	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
[544]	385	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
[437]	386	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[693]	387	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
[251]	388	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	389	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	390	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	391	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	392	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	393	locat=parameter; exit;;
[1]	394	esac
	395	fi
	396
	397
	398	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	399	if [[ $no_default_queue != none ]]
	400	then
	401	error=false
	402	ndq=$no_default_queue
	403	case $remote_host in
	404	(ibm) case $ndq in
	405	(p690_express\|p690_standard\|p690_long) error=false;;
	406	(*) error=true;;
	407	esac;;
	408	(ibmh) case $ndq in
[312]	409	(no_class) error=false;;
[1]	410	(*) error=true;;
	411	esac;;
[693]	412	(ibmkisti) case $ndq in
	413	(class.32plus\|class.1-2\|class.2-32) error=false;;
	414	(*) error=true;;
	415	esac;;
[622]	416	(ibmku) case $ndq in
	417	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	418	(*) error=true;;
	419	esac;;
[1]	420	(ibms) case $ndq in
	421	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	422	(*) error=true;;
	423	esac;;
	424	(ibmy) case $ndq in
	425	(parallel) error=false;;
	426	(*) error=true;;
	427	esac;;
[440]	428	(lckyoto) case $ndq in
	429	(eh\|ph) error=false;;
	430	(*) error=true;;
	431	esac;;
[191]	432	(lcsgib\|lcsgih) case $ndq in
[416]	433	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	434	(*) error=true;;
	435	esac;;
[1]	436	(lctit) case $ndq in
[635]	437	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	438	(*) error=true;;
	439	esac;;
	440	(t3eb) case $ndq in
	441	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	442	(*) error=true;;
	443	esac;;
[251]	444	(necriam) case $ndq in
[253]	445	(SP\|SS\|P6) error=false;;
[251]	446	(*) error=true;;
	447	esac;;
[1]	448	(t3eh) case $ndq in
	449	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	450	(*) error=true;;
	451	esac;;
	452	(t3ej2\|t3ej5) case $ndq in
	453	(low\|normal\|high) error=false;;
	454	(*) error=true;;
	455	esac;;
	456	(t3es) case $ndq in
	457	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	458	(*) error=true;;
	459	esac;;
	460	(unics) case $ndq in
	461	(unics\|ht) error=false;;
	462	(*) error=true;;
	463	esac;;
	464	esac
	465	if [[ $error = true ]]
	466	then
	467	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	468	locat=parameter; exit
	469	else
	470	queue=$no_default_queue
	471	fi
	472	fi
	473
	474
	475
	476	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	477	# AUFTEILEN
	478	done=false
	479	while [[ $done = false ]]
	480	do
	481	if (( $cputime <= 0 ))
	482	then
	483	printf "\n +++ wrong cpu-time or cpu-time missing"
	484	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	485	printf "\n >>> "
	486	read cputime 1>/dev/null 2>&1
	487	else
	488	done=true
	489	fi
	490	done
	491	if [[ $remote_host = nech ]]
	492	then
	493	if (( tasks_per_node != 0 ))
	494	then
	495	(( cputime = cputime * tasks_per_node ))
	496	elif [[ $numprocs != 0 ]]
	497	then
	498	(( cputime = cputime * numprocs ))
	499	fi
	500	fi
	501	(( stunden = cputime / 3600 ))
	502	(( resttime = cputime - stunden * 3600 ))
	503	(( minuten = resttime / 60 ))
	504	(( sekunden = resttime - minuten * 60 ))
	505	timestring=${stunden}:${minuten}:${sekunden}
	506
	507
	508
	509	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	510	done=false
	511	while [[ $done = false ]]
	512	do
	513	if (( memory <= 0 ))
	514	then
	515	printf "\n +++ wrong memory demand or memory demand missing"
	516	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	517	printf "\n >>> "
	518	read memory 1>/dev/null 2>&1
	519	else
	520	done=true
	521	fi
	522	done
	523
[251]	524	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	525	then
	526	if (( tasks_per_node != 0 ))
	527	then
	528	(( Memory = memory * tasks_per_node / 1000 ))
	529	elif [[ $numprocs != 0 ]]
	530	then
	531	(( Memory = memory * numprocs / 1000 ))
	532	else
	533	(( Memory = memory / 1000 ))
	534	fi
[635]	535	elif [[ $remote_host = lctit ]]
	536	then
	537	(( Memory = memory * tasks_per_node / 1000 ))
[1]	538	fi
	539
	540
	541	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	542	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	543	then
	544	(( memory = memory * threads_per_task ))
	545	fi
	546
	547
	548	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	549	if (( tasks_per_node != 0 ))
	550	then
[622]	551	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
[1]	552	fi
	553
[622]	554	# Calculate number of processes per node
	555	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	556
[696]	557	# Calculate number of MPI tasks
	558	(( mpi_tasks = numprocs / threads_per_task ))
[1]	559
[696]	560
[1]	561	# HEADER-AUSGABE
	562	if [[ $verify = true ]]
	563	then
	564	printf "\n\n"
	565	printf "#--------------------------------------------------------------# \n"
	566	spalte1=SUBJOB;spalte2=$(date)
	567	printf "\| $spalte1$spalte2 \| \n"
	568	printf "\| \| \n"
	569	printf "\| values of parameters/options: \| \n"
	570	spalte1=local_host$punkte; spalte2=$punkte$local_host
	571	printf "\| $spalte1$spalte2 \| \n"
	572	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	573	printf "\| $spalte1$spalte2 \| \n"
	574	spalte1=queue$punkte; spalte2=$punkte$queue
	575	printf "\| $spalte1$spalte2 \| \n"
	576	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	577	printf "\| $spalte1$spalte2 \| \n"
	578	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	579	printf "\| $spalte1$spalte2 \| \n"
	580	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	581	printf "\| $spalte1$spalte2 \| \n"
	582	printf "#--------------------------------------------------------------# \n\n"
	583
	584
	585	# KONTROLLABFRAGE, OB ALLES O.K.
	586	antwort="dummy"
	587	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	588	do
	589	read antwort?" >>> continue (y/n) ? "
	590	done
	591	if [[ $antwort = n \|\| $antwort = N ]]
	592	then
	593	locat=verify; exit
	594	fi
	595	printf "\n"
	596	fi
	597
	598
	599
	600	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	601	kennung=$RANDOM
	602	job_on_remhost=${job_name}_${kennung}_$local_host
	603	job_to_send=job_to_send_$kennung
	604	if [[ $delete_dayfile = false ]]
	605	then
	606	remote_dayfile=${local_host}_${job_name}_result_$kennung
	607	local_dayfile=${remote_host}_${job_name}
	608	else
	609	remote_dayfile=/dev/null
	610	fi
	611
	612
	613
[622]	614	# Generate the batch job scripts (qsub/msub/LoadLeveler)
[1]	615	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	616	then
	617
[622]	618	# General LoadLeveler settings
	619	execute_in_shell="#!/bin/ksh"
	620	use_shell="# @ shell = /bin/ksh"
	621	consumable_memory="ConsumableMemory($memory mb)"
	622	class="# @ class = $queue"
	623	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	624	network_to_use="# @ network.mpi = sn_all,shared,us"
	625	data_limit="# @ data_limit = 1.76gb"
	626	image_size="# @ image_size = 50"
[693]	627	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	628
[693]	629	if [[ $email_notification = none ]]
	630	then
	631	notify_user=""
	632	else
	633	notify_user="# @ notify_user = $email_notification"
	634	if [[ $delete_dayfile = true ]]
	635	then
	636	notification='# @ notification = never'
	637	fi
	638	fi
[622]	639
[312]	640	if [[ $remote_host = ibmh ]]
[1]	641	then
[312]	642	data_limit=""
	643	network_to_use=""
	644	class=""
	645	environment=""
[693]	646	elif [[ $remote_host = ibmkisti ]]
	647	then
	648	network_to_use="# @ network.MPI = sn_all,shared,US"
	649	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	650	if [[ $threads_per_task = 1 ]]
	651	then
	652	rset="# @ rset = RSET_MCM_AFFINITY"
	653	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	654	fi
[693]	655	environment=""
	656	use_shell=""
	657	data_limit=""
	658	image_size=""
[622]	659	elif [[ $remote_host = ibmku ]]
	660	then
	661	execute_in_shell="#!/usr/bin/ksh"
	662	use_shell="# @ shell = /usr/bin/ksh"
	663	consumable_memory=""
	664	environment=""
	665	network_to_use="# @ network.mpi = sn_all,shared,us"
	666	data_limit=""
	667	image_size=""
	668	elif [[ $remote_host = ibms ]]
	669	then
	670	network_to_use="# @ network.mpi = csss,shared,us"
	671	elif [[ $remote_host = ibmy ]]
	672	then
	673	consumable_memory=""
	674	network_to_use=""
[1]	675	fi
	676
	677	cat > $job_to_send << %%END%%
[622]	678	$execute_in_shell
	679	$use_shell
[1]	680
	681	# @ job_type = parallel
[693]	682	# @ job_name = $job_name
[1]	683	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	684	# @ output = $remote_dayfile
	685	# @ error = $remote_dayfile
[693]	686	$wall_clock_limit
[622]	687	$image_size
[312]	688	$class
	689	$environment
[1]	690	$network_to_use
	691	$data_limit
[693]	692	$rset
	693	$mcm_affinity_options
[1]	694	$notification
[693]	695	$notify_user
[1]	696
	697	%%END%%
	698
	699	if (( nodes > 0 ))
	700	then
	701
[693]	702	if [[ $remote_host != ibmkisti ]]
	703	then
	704
	705	cat >> $job_to_send << %%END%%
[1]	706	# @ node = $nodes
[622]	707	# @ tasks_per_node = $processes_per_node
[1]	708	# @ node_usage = $node_usage
	709	# @ queue
	710
	711	%%END%%
	712
[693]	713	else
	714
	715	cat >> $job_to_send << %%END%%
[696]	716	# @ total_tasks = $mpi_tasks
[693]	717	# @ blocking = unlimited
	718	# @ queue
	719
	720	%%END%%
	721
	722	fi
	723
[1]	724	else
	725
	726	if [[ $remote_host != ibmy ]]
	727	then
	728
	729	cat >> $job_to_send << %%END%%
	730	# @ blocking = unlimited
	731	# @ total_tasks = $numprocs
	732	# @ node_usage = $node_usage
	733	# @ queue
	734
	735	%%END%%
	736
	737	else
	738
	739	cat >> $job_to_send << %%END%%
	740	# @ node = 1
	741	# @ total_tasks = $numprocs
	742	# @ queue
	743
	744	%%END%%
	745
	746	fi
	747
	748	fi
	749
[696]	750	# workaround because of silly job filter on ibmkisti
	751	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	752	then
	753	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	754	fi
	755
[1]	756	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	757	then
	758
	759	cat > $job_to_send << %%END%%
	760	#!/bin/ksh
	761
	762	# @ job_type = serial
	763	# @ node_usage = $node_usage
	764	# @ job_name = palm
	765	# @ wall_clock_limit = ${timestring},$timestring
	766	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	767	# @ output = $remote_dayfile
	768	# @ error = $remote_dayfile
[312]	769	$class
[1]	770	$notification
	771
	772	# @ queue
	773
	774	%%END%%
	775
[108]	776	elif [[ $remote_host = lcfimm ]]
	777	then
	778
	779	if [[ $numprocs != 0 ]]
	780	then
	781	cat > $job_to_send << %%END%%
	782	#!/bin/ksh
	783	#PBS -N $job_name
[552]	784	#PBS -A $project_account
[108]	785	#PBS -l walltime=$timestring
[622]	786	#PBS -l nodes=${nodes}:ppn=$processes_per_node
[108]	787	#PBS -l pmem=${memory}mb
	788	#PBS -m abe
	789	#PBS -o $remote_dayfile
	790	#PBS -j oe
	791	mpd &
	792
	793	%%END%%
	794
[168]	795	else
	796	cat > $job_to_send << %%END%%
	797	#!/bin/ksh
	798	#PBS -N $job_name
[552]	799	#PBS -A $project_account
[168]	800	#PBS -l walltime=$timestring
	801	#PBS -l ncpus=1
	802	#PBS -l pmem=${memory}mb
	803	#PBS -m abe
	804	#PBS -o $remote_dayfile
	805	#PBS -j oe
	806
	807	%%END%%
	808
	809	fi
	810
[717]	811	elif [[ $remote_host = lck \|\| $remote_host = lckordi ]]
[368]	812	then
	813
	814	if [[ $numprocs != 0 ]]
	815	then
	816	cat > $job_to_send << %%END%%
	817	#!/bin/ksh
	818	#PBS -N $job_name
	819	#PBS -l walltime=$timestring
	820	#PBS -l ncpus=$numprocs
	821	#PBS -l pmem=${memory}mb
	822	#PBS -o $remote_dayfile
	823	#PBS -j oe
	824
	825	mpd &
	826
	827	%%END%%
	828
	829	else
	830	cat > $job_to_send << %%END%%
	831	#!/bin/ksh
	832	#PBS -N $job_name
	833	#PBS -l walltime=$timestring
	834	#PBS -l ncpus=1
	835	#PBS -l pmem=${memory}mb
	836	#PBS -o $remote_dayfile
	837	#PBS -j oe
	838
	839	%%END%%
	840
	841	fi
	842
[693]	843	elif [[ $remote_host = lcyon ]]
	844	then
	845
	846	if [[ $numprocs != 0 ]]
	847	then
	848	cat > $job_to_send << %%END%%
	849	#!/bin/ksh
	850	#PBS -N $job_name
	851	#PBS -l walltime=$timestring
	852	#PBS -l ncpus=$numprocs
	853	#PBS -l pmem=${memory}mb
	854	#PBS -o $remote_dayfile
	855	#PBS -j oe
	856
	857	%%END%%
	858
	859	else
	860	cat > $job_to_send << %%END%%
	861	#!/bin/ksh
	862	#PBS -N $job_name
	863	#PBS -l walltime=$timestring
	864	#PBS -l ncpus=1
	865	#PBS -l pmem=${memory}mb
	866	#PBS -o $remote_dayfile
	867	#PBS -j oe
	868
	869	%%END%%
	870
	871	fi
	872
[181]	873	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	874	then
	875
[376]	876	if [[ "$sgi_feature" != "" ]]
	877	then
	878	feature_directive="#PBS -l feature=$sgi_feature"
	879	else
	880	feature_directive=""
	881	fi
[399]	882
[416]	883	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	884	then
	885	feature_directive="#PBS -l feature=data"
	886	fi
[376]	887
[416]	888	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	889	then
	890	queue_directive="#PBS -q $queue"
	891	else
	892	queue_directive=""
	893	fi
	894
[352]	895	if [[ $email_notification = none ]]
	896	then
	897	email_directive=""
	898	else
	899	email_directive="#PBS -M $email_notification"
	900	fi
	901
[179]	902	if [[ $numprocs != 0 ]]
	903	then
	904	cat > $job_to_send << %%END%%
[181]	905	#!/bin/bash
[179]	906	#PBS -N $job_name
	907	#PBS -l walltime=$timestring
[622]	908	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[181]	909	#PBS -l naccesspolicy=$node_usage
[179]	910	#PBS -o $remote_dayfile
	911	#PBS -j oe
[376]	912	$feature_directive
[191]	913	$queue_directive
[352]	914	$email_directive
[179]	915
[622]	916	eval \`/sw/swdist/bin/modulesinit\`
	917	#. /usr/share/modules/init/bash
[493]	918	$module_calls
[374]	919
[181]	920	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	921
	922	%%END%%
	923
	924	else
	925	cat > $job_to_send << %%END%%
	926	#PBS -S /bin/bash
	927	#PBS -N $job_name
	928	#PBS -l walltime=$timestring
	929	#PBS -l ncpus=1
	930	#PBS -o $remote_dayfile
[475]	931	#PBS -j oe
[400]	932	$queue_directive
	933	$email_directive
[179]	934
[622]	935	eval \`/sw/swdist/bin/modulesinit\`
	936	#. /usr/share/modules/init/bash
[493]	937	$module_calls
[475]	938
[179]	939	%%END%%
	940
	941	fi
	942
[164]	943	elif [[ $remote_host = lcxt4 ]]
	944	then
	945
	946	if [[ $numprocs != 0 ]]
	947	then
	948	cat > $job_to_send << %%END%%
	949	#!/bin/ksh
	950	#PBS -S /bin/ksh
	951	#PBS -N $job_name
[552]	952	#PBS -A $project_account
[206]	953	#PBS -j oe
[164]	954	#PBS -l walltime=$timestring
	955	#PBS -l mppwidth=${numprocs}
[622]	956	#PBS -l mppnppn=${processes_per_node}
[164]	957	#PBS -m abe
	958	#PBS -o $remote_dayfile
[492]	959	$email_directive
[164]	960
[343]	961	. /opt/modules/default/init/ksh
[493]	962	$module_calls
[343]	963
[164]	964	%%END%%
	965
[108]	966	else
	967	cat > $job_to_send << %%END%%
	968	#!/bin/ksh
[168]	969	#PBS -S /bin/ksh
[108]	970	#PBS -N $job_name
[552]	971	#PBS -A $project_account
[206]	972	#PBS -j oe
[108]	973	#PBS -l walltime=$timestring
	974	#PBS -l ncpus=1
	975	#PBS -l pmem=${memory}mb
	976	#PBS -m abe
[492]	977	$email_directive
[108]	978	#PBS -o $remote_dayfile
	979
[343]	980	. /opt/modules/default/init/ksh
[493]	981	$module_calls
[343]	982
[108]	983	%%END%%
	984
	985	fi
	986
[440]	987	elif [[ $remote_host = lckyoto ]]
[437]	988	then
	989
[440]	990	cat > $job_to_send << %%END%%
	991	#!/bin/ksh
	992	# @\$-o $remote_dayfile
	993	# @\$-eo -oi
	994	# @\$-lP 16
	995	# @\$-lp 1
	996	# @\$-lm 28gb -llm unlimited -ls unlimited
	997	# @\$-q $queue
	998	# @\$-Pvn abs_pack
	999	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1000	#. /thin/local/etc/setprofile/intel-11.0.sh
	1001	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1002	. ~/.myprofile
	1003	#. /home2/t/t51254/palm/current_version/myprofile
	1004	#. /thin/apps/pgi/mpi.sh
	1005	#
	1006	env
	1007	#
	1008	set -x
	1009
	1010	%%END%%
	1011
	1012	elif [[ $remote_host = lcxt5m ]]
	1013	then
	1014
[437]	1015	if [[ $numprocs != 0 ]]
	1016	then
	1017	cat > $job_to_send << %%END%%
	1018	#!/bin/ksh
	1019	#PBS -S /bin/ksh
	1020	#PBS -N $job_name
	1021	#PBS -j oe
	1022	#PBS -l walltime=$timestring
	1023	#PBS -l mppwidth=${numprocs}
[622]	1024	#PBS -l mppnppn=${processes_per_node}
[437]	1025	#PBS -m abe
	1026	#PBS -o $remote_dayfile
	1027
	1028	. /opt/modules/default/init/ksh
[493]	1029	$module_calls
[437]	1030
	1031	%%END%%
	1032
	1033	else
	1034	cat > $job_to_send << %%END%%
	1035	#!/bin/ksh
	1036	#PBS -S /bin/ksh
	1037	#PBS -N $job_name
	1038	#PBS -j oe
	1039	#PBS -l walltime=$timestring
	1040	#PBS -l ncpus=1
	1041	#PBS -l pmem=${memory}mb
	1042	#PBS -m abe
	1043	#PBS -o $remote_dayfile
	1044
	1045	. /opt/modules/default/init/ksh
[493]	1046	$module_calls
[437]	1047
	1048	%%END%%
	1049
	1050	fi
	1051
[1]	1052	elif [[ $remote_host = nech ]]
	1053	then
	1054
	1055	if (( nodes > 1 ))
	1056	then
	1057	cat > $job_to_send << %%END%%
	1058	#!/bin/ksh
[622]	1059	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1060	#PBS -l ${qsubmem}=${Memory}gb
	1061	#PBS -b $nodes
	1062	#PBS -o $remote_dayfile
	1063	#PBS -N palm
	1064	#PBS -j o
	1065	#PBS -T mpisx
	1066
	1067	%%END%%
	1068
	1069	elif [[ $numprocs != 0 ]]
	1070	then
	1071	cat > $job_to_send << %%END%%
	1072	#!/bin/ksh
[622]	1073	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1074	#PBS -l ${qsubmem}=${Memory}gb
	1075	#PBS -o $remote_dayfile
	1076	#PBS -N palm
	1077	#PBS -j o
	1078
	1079	%%END%%
	1080
	1081	else
	1082	cat > $job_to_send << %%END%%
	1083	#!/bin/ksh
	1084	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1085	#PBS -o $remote_dayfile
	1086	#PBS -j o
	1087
	1088	%%END%%
	1089
	1090	fi
	1091
[251]	1092	elif [[ $remote_host = necriam ]]
[35]	1093	then
	1094
	1095	if (( nodes > 1 ))
	1096	then
	1097	cat > $job_to_send << %%END%%
	1098	#!/bin/ksh
	1099	#PBS -b $nodes
	1100	#PBS -o $remote_dayfile
[253]	1101	#PBS -N $job_name
[35]	1102	#PBS -j o
[251]	1103	#PBS -v MPIPROGINV=YES
[35]	1104
	1105	%%END%%
	1106
	1107	elif [[ $numprocs != 0 ]]
	1108	then
	1109	cat > $job_to_send << %%END%%
	1110	#!/bin/ksh
	1111	#PBS -q ${queue}
	1112	#PBS -o $remote_dayfile
[253]	1113	#PBS -N $job_name
[35]	1114	#PBS -j o
[251]	1115	#PBS -v MPIPROGINV=YES
[35]	1116
	1117	%%END%%
	1118
	1119	else
	1120	cat > $job_to_send << %%END%%
	1121	#!/bin/ksh
	1122	#PBS -o $remote_dayfile
	1123	#PBS -j o
	1124
	1125	%%END%%
	1126
	1127	fi
	1128
[1]	1129	elif [[ $remote_host = lctit ]]
	1130	then
	1131	cat > $job_to_send << %%END%%
[635]	1132	#!/bin/ksh
[1]	1133
[678]	1134	$module_calls
	1135
[1]	1136	%%END%%
	1137
	1138	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[678]	1139	if [[ $tasks_per_node != $processes_per_node ]]
	1140	then
	1141	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
	1142	else
	1143	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
	1144	fi
[1]	1145
	1146	else
	1147
	1148	cat > $job_to_send << %%END%%
	1149	# @\$-q ${queue}
	1150	# @\$-l${qsubtime} $timestring
	1151	# @\$-l${qsubmem} ${memory}mb
	1152	# @\$-o $remote_dayfile
	1153	# @\$-eo
	1154
	1155	%%END%%
	1156
	1157	fi
	1158
	1159
	1160	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1161	# BEI EXIT VERANLASSEN
	1162	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1163	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1164	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1165	then
	1166	echo "set +vx" >> $job_to_send
	1167	echo "trap '" >> $job_to_send
	1168	echo "set +vx" >> $job_to_send
[635]	1169	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec ]]
[1]	1170	then
[622]	1171	if [[ $remote_host = ibmh ]]
[1]	1172	then
	1173	return_queue=c1
[693]	1174	elif [[ $remote_host = ibmkisti ]]
	1175	then
	1176	return_queue=class.1-2
[622]	1177	elif [[ $remote_host = ibmku ]]
	1178	then
	1179	return_queue=sdbg2
[1]	1180	elif [[ $remote_host = ibms ]]
	1181	then
	1182	return_queue=p_normal
	1183	elif [[ $remote_host = ibmy ]]
	1184	then
	1185	return_queue=serial
[325]	1186	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1187	then
[326]	1188	return_queue=serialq
[251]	1189	elif [[ $remote_host = necriam ]]
[1]	1190	then
[253]	1191	return_queue=SP
[1]	1192	else
	1193	return_queue=unknown
	1194	fi
	1195
	1196	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1197	then
	1198
[622]	1199	if [[ $remote_host = ibmku ]]
	1200	then
	1201	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1202	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1203	else
	1204	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1205	fi
[1]	1206	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1207	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1208	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1209	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1210	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1211	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1212	if [[ $host != "ibmh" ]]
	1213	then
	1214	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1215	fi
[1]	1216	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1217	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1218
	1219	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1220	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1221
	1222	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	1223	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
[622]	1224	if [[ $remote_host = ibmku ]]
	1225	then
	1226	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
	1227	fi
[1]	1228	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1229
	1230	elif [[ $remote_host = nech ]]
	1231	then
	1232	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1233	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1234	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1235	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1236	echo "#PBS -j o" >> $job_to_send
	1237	echo " " >> $job_to_send
	1238	echo "set -x" >> $job_to_send
	1239	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1240	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1241	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1242	echo "%%END%%" >> $job_to_send
	1243
[251]	1244	elif [[ $remote_host = necriam ]]
[35]	1245	then
	1246	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1247	echo "#PBS -q $return_queue" >> $job_to_send
	1248	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1249	echo "#PBS -j o" >> $job_to_send
	1250	echo " " >> $job_to_send
	1251	echo "set -x" >> $job_to_send
	1252	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1253	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1254	echo "%%END%%" >> $job_to_send
	1255
[181]	1256	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1257	then
	1258	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1259	echo "#!/bin/bash" >> $job_to_send
	1260	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1261	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1262	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1263	echo "#PBS -l feature=data" >> $job_to_send
[181]	1264	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1265	echo "#PBS -j oe" >> $job_to_send
	1266	echo " " >> $job_to_send
	1267	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1268	echo "set -x" >> $job_to_send
	1269	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1270	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1271	echo "%%END%%" >> $job_to_send
	1272
[1]	1273	else
	1274
	1275	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1276	echo "# @\\\$-q $return_queue" >> $job_to_send
	1277	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1278	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1279	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1280	then
	1281	echo "# @\$-l mpp_p=0" >> $job_to_send
	1282	fi
	1283	echo '# @\$-lF 10mb' >> $job_to_send
	1284	# echo '# @\$-o /dev/null' >> $job_to_send
	1285	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1286	echo '# @\\\$-eo' >> $job_to_send
	1287	echo " " >> $job_to_send
	1288	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1289	then
	1290	echo "set +vx" >> $job_to_send
	1291	echo ". .profile" >> $job_to_send
	1292	fi
	1293	echo "set -x" >> $job_to_send
	1294	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	1295	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1296	echo "%%END%%" >> $job_to_send
	1297	fi
	1298
	1299	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1300	then
	1301	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1302	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1303	then
	1304	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1305	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1306	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1307	then
	1308	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1309	elif [[ $remote_host = t3es ]]
	1310	then
	1311	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	1312	else
	1313	echo "qsub scpjob.$kennung" >> $job_to_send
	1314	fi
[622]	1315	if [[ $remote_host != ibmku ]]
	1316	then
	1317	echo "rm scpjob.$kennung" >> $job_to_send
	1318	fi
[1]	1319	if [[ $remote_host = nech ]]
	1320	then
	1321	echo "cd -" >> $job_to_send
	1322	fi
	1323	else
	1324	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1325	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1326	fi
	1327	echo "set -x" >> $job_to_send
	1328	echo " ' exit" >> $job_to_send
	1329	echo "set -x" >> $job_to_send
	1330	fi
	1331
	1332
	1333
	1334	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1335	cat $file_to_send >> $job_to_send
[69]	1336
[1]	1337	if [[ $remote_host = ibm ]]
	1338	then
	1339	echo " " >> $job_to_send
	1340	echo "exit" >> $job_to_send
	1341	fi
[635]	1342
	1343	# remove job file
[622]	1344	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
[69]	1345	then
	1346	echo " " >> $job_to_send
	1347	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1348	fi
[1]	1349
	1350
	1351
	1352	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1353	if [[ -z $remote_user ]]
	1354	then
	1355	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1356	then
	1357	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1358	fi
	1359	fi
	1360
	1361
	1362
	1363	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1364	if [[ $no_submit = false ]]
	1365	then
	1366	if [[ $remote_host != $local_host ]]
	1367	then
	1368	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1369	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1370	then
[82]	1371	job_catalog_save=$job_catalog
	1372	job_catalog=job_queue
	1373	elif [[ $remote_host = nech ]]
	1374	then
	1375	job_catalog_save=$job_catalog
	1376	job_catalog=/hpf/b/${remote_user}/job_queue
	1377	fi
	1378	if [[ $local_host = decalpha ]]
	1379	then
	1380	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	1381	# PASSWORT AB
	1382	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	1383	elif [[ $remote_host = nech ]]
	1384	then
	1385	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1386	# TRANSFERIERT WERDEN
	1387	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1388	else
[82]	1389	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1390	fi
[82]	1391	if [[ $? = 1 ]]
	1392	then
	1393	locat=scp; exit
	1394	fi
	1395	if [[ $remote_host = ibms ]]
	1396	then
	1397	job_catalog=$job_catalog_save
	1398	fi
[1]	1399	[[ $verify = true ]] && printf "\n >>> finished\n"
	1400	else
	1401	eval job_catalog=$job_catalog
	1402	cp $job_to_send ${job_catalog}/$job_on_remhost
	1403	fi
	1404
	1405
	1406
	1407	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1408	if [[ $remote_host != $local_host ]]
	1409	then
	1410	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1411
	1412	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
[1]	1413	then
[635]	1414	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
	1415	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
	1416	elif [[ $remote_host = ibmku ]]
	1417	then
	1418	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1]	1419	else
[635]	1420	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1421	fi
[1]	1422
	1423	[[ $verify = true ]] && printf " >>> o.k.\n"
	1424	else
	1425	cd $job_catalog
[210]	1426	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1427	then
	1428	eval $submcom $job_on_remhost
[717]	1429	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck \|\| $localhost = lckordi\|\| $localhost = lcyon ]]
[108]	1430	then
[635]	1431	chmod u+x $job_on_remhost
	1432	echo "$submcom $job_on_remhost"
[108]	1433	eval $submcom $job_on_remhost
[1]	1434	elif [[ $local_host = nech ]]
	1435	then
	1436	if [[ $queue = default ]]
	1437	then
	1438	eval $submcom $job_on_remhost
	1439	else
	1440	eval $submcom -q $queue $job_on_remhost
	1441	fi
	1442	else
	1443	qsub $job_on_remhost
	1444	fi
[622]	1445
	1446	# Jobfile must not be deleted on lctit/ibmku!! This will be done
	1447	# only at the end of the job.
	1448	if [[ $local_host != lctit && $local_host != ibmku ]]
	1449	then
	1450	rm $job_on_remhost
	1451	fi
[1]	1452	cd - > /dev/null
	1453	fi
	1454	fi
	1455
	1456
	1457
	1458	# ABSCHLUSSARBEITEN
	1459
	1460	if [[ $no_submit = false ]]
	1461	then
	1462	rm $job_to_send
	1463	fi
	1464	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |