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subjob @ 515

Last change on this file since 515 was 493, checked in by raasch, 15 years ago

New:
---
Output in NetCDF4-format. New d3par-parameter netcdf_data_format.

(check_open, check_parameters, close_file, data_output_2d, data_output_3d, header, modules, netcdf, parin)

Modules to be loaded for compilation (mbuild) or job execution (mrun)
can be given in the configuration file using variable modules. Example:

%modules ifort/11.0.069:netcdf lcsgih parallel

This method replaces the (undocumented) mpilib-variable.

WARNING: All fixed settings of modules in the scripts mbuild, mrun, and subjob
have been removed! Please set the modules variable appropriately in your
configuration file. (mbuild, mrun, subjob)

Changed:

Parameters netcdf_64bit and netcdf_64bit_3d have been removed. Use
netcdf_data_format = 2 for choosing the classic 64bit-offset format (this is
the default). The offset-format can not be set independently for the
3d-output-data any more.

Parameters netcdf_format_mask, netcdf_format_mask_av, and variables
nc_format_mask, format_parallel_io removed. They are replaced by the new
parameter netcdf_data_format. (check_open, close_file,
data_output_mask, header, init_masks, modules, parin)

Errors:

bugfix in trunk/UTIL/Makefile: forgot to compile for interpret_config

Bugfix: timeseries data have to be collected by PE0 (user_statistics)

Property svn:keywords set to Id Rev

File size: 47.0 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[169]	3	# $Id: subjob 493 2010-03-01 08:30:24Z raasch $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[108]	85	# 03/08/07 - Marcus- lcfimm admitted
[113]	86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
[118]	87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
	88	# suggestions
[122]	89	# 19/10/07 - Marcus- add new optional argument -g group_number
[125]	90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
[129]	91	# 30/10/07 - Marcus- further adjustments for queues on lctit
[164]	92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
	93	# Science)
[179]	94	# 14/07/08 - Siggi - adjustments for lcsgih
[205]	95	# 23/09/08 - Gerald- paesano admitted
[206]	96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
[251]	97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
[292]	98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
[312]	99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
[325]	100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
[343]	101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
[352]	102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
[366]	103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
	104	# now run on the data nodes (feature=data)
[367]	105	# 25/08/09 - BjornM- adapted for lck
[372]	106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
[376]	107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
	108	# set in the config file by the user
[416]	109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
	110	# adding special1q
[407]	111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
[416]	112	# 16/10/09 - Carolin-adding permq
[440]	113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	114	# 03/02/10 - Siggi - bug in serial jobs removed
[492]	115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
	116	# notification)
[493]	117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
	118	# module_calls
[1]	119
[437]	120
[493]	121
[1]	122	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	123	delete_dayfile=false
	124	email_notification=none
[122]	125	group_number=none
[1]	126	locat=normal
	127	no_default_queue=none
	128	no_submit=false
	129	job_catalog="~/job_queue"
	130	job_name=none
	131	local_user=$LOGNAME
	132	node_usage=shared
[475]	133	numprocs=0
[1]	134	punkte="..........................................................."
	135	submcom=qsub
	136	queue=default
	137	remote_host=none
	138	remote_user=""
	139	verify=true
	140
	141	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
	142	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
	143	typeset -L20 spalte1
	144	typeset -R40 spalte2
	145	typeset -L60 spalte3
	146
	147
	148
	149	# FEHLERBEHANDLUNG
	150	# BEI EXIT:
	151	trap 'if [[ $locat != normal ]]
	152	then
	153	case $locat in
	154	(option) printf "\n --> available optios can be displayed"
	155	printf " by typing:"
	156	printf "\n \"subjob ?\" \n";;
	157	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	158	(*) printf "\n +++ unknown error"
	159	printf "\n please inform S. Raasch!\n"
	160	esac
	161	[[ -f $job_to_send ]] && rm $job_to_send
	162	printf "\n\n+++ SUBJOB killed \n\n"
	163	fi' exit
	164
	165
	166	# BEI TERMINAL-BREAK:
	167	trap '[[ -f $job_to_send ]] && rm $job_to_send
	168	printf "\n\n+++ SUBJOB killed \n\n"
	169	exit
	170	' 2
	171
	172
	173
	174
	175	# LOKALEN HOSTNAMEN FESTSTELLEN
	176	local_host=$(hostname)
	177
	178
	179
	180	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	181	# UEBERHAUPT ZULAESSIG IST
	182	case $local_host in
	183	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	184	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	185	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	186	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	187	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	188	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	189	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	190	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	191	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[1]	192	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
[12]	193	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[292]	194	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[372]	195	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[108]	196	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	197	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	198	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	199	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	200	(node*) local_addres=165.132.26.61 local_host=lck;;
[101]	201	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	202	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	203	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	204	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	205	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[164]	206	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
[400]	207	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	208	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	209	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	210	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[292]	211	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	212	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	213	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[312]	214	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[5]	215	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	216	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	217	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	218	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	219	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[164]	220	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
[1]	221	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	222	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	223	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	224	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[5]	225	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[1]	226	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	227	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	228	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	229	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	230	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[1]	231	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
	232	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
	233	(*) printf "\n +++ \"$local_host\" unknown";
	234	printf "\n please inform S. Raasch!";
	235	locat=parameter; exit;;
	236	esac
	237
	238
	239
	240	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	241	remote_host=$local_host
	242
	243
	244
	245
	246	# PROZEDUROPTIONEN EINLESEN
[352]	247	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
[1]	248	do
	249	case $option in
	250	(c) job_catalog=$OPTARG;;
	251	(d) delete_dayfile=true;;
	252	(D) no_submit=true;;
[352]	253	(e) email_notification=$OPTARG;;
[125]	254	(g) group_number=$OPTARG;;
[1]	255	(h) remote_host=$OPTARG;;
	256	(m) memory=$OPTARG;;
	257	(n) job_name=$OPTARG;;
	258	(N) node_usage=$OPTARG;;
	259	(O) threads_per_task=$OPTARG;;
	260	(q) no_default_queue=$OPTARG;;
	261	(t) cputime=$OPTARG;;
	262	(T) tasks_per_node=$OPTARG;;
	263	(u) remote_user=$OPTARG;;
	264	(v) verify=false;;
	265	(X) numprocs=$OPTARG;;
	266	(\?) printf "\n +++ Option $OPTARG unknown \n";
	267	locat=option; exit;;
	268	esac
	269	done
	270
	271
	272	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	273	shift OPTIND-1; file_to_send=$1
	274
	275
	276	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	277	if [ "$1" = "?" ]
	278	then
	279	(printf "\n *** subjob can be called as follows:\n"
	280	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	281	printf "\n Description of available options:\n"
	282	printf "\n Option Description Default-Value"
	283	printf "\n -c job-input- and output-catalog ~/job_queue"
	284	printf "\n -d no job-protocol will be created ---"
	285	printf "\n -D only the job-file will be created ---"
	286	printf "\n -h execution host, available hosts: $remote_host"
[5]	287	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
[251]	288	printf "\n lctit, nech, necriam, unics"
[1]	289	printf "\n -m memory demand per process in MByte ---"
	290	printf "\n -n jobname <jobdatei>"
	291	printf "\n -O threads per task (for OpenMP usage) 1"
	292	printf "\n -q job-queue to be used default"
	293	printf "\n -t allowed cpu-time in seconds ---"
	294	printf "\n -T tasks per node (on parallel hosts) ---"
	295	printf "\n -u username on execution host from .netrc"
	296	printf "\n -v no prompt for confirmation ---"
	297	printf "\n -X # of processors (on parallel hosts) 1"
	298	printf "\n "
	299	printf "\n The only possible positional parameter is <jobfile>:"
	300	printf "\n The complete NQS-job must be provided here."
	301	printf "\n <jobfile>=? creates this outline\n\n") \| more
	302	exit
	303	fi
	304
	305
	306
	307	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	308	if [[ "$file_to_send" = "" ]]
	309	then
	310	printf "\n +++ job-file missing"
	311	locat=parameter; exit
	312	else
	313	if [[ -f $file_to_send ]]
	314	then
	315	true
	316	else
	317	printf "\n +++ job-file: "
	318	printf "\n $file_to_send"
	319	printf "\n does not exist"
	320	locat=parameter; exit
	321	fi
	322	fi
	323
	324
	325
	326	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	327	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	328	if [[ $job_name = none ]]
	329	then
	330	job_name=$file_to_send
	331	fi
	332	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	333	then
	334	printf "\n +++ job-file name: "
	335	printf "\n $job_name"
	336	printf "\n must not contain \"/\"-characters"
	337	locat=parameter; exit
	338	fi
	339
	340
	341
	342
	343	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	344	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	345	if [[ $remote_host = none ]]
	346	then
	347	printf "\n +++ host missing"
	348	locat=option; exit
	349	else
	350	case $remote_host in
[251]	351	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	352	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	353	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[251]	354	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	355	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	356	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	357	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[407]	358	(lcsgib) queue=smallq; remote_addres=130.73.232.102; submcom=/opt/moab/bin/msub;;
	359	(lcsgih) queue=smallq; remote_addres=130.75.4.103; submcom=/opt/moab/bin/msub;;
[367]	360	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[251]	361	(lctit) queue=lctit; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
	362	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.3.0/bin/qsub;;
[437]	363	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[251]	364	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	365	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	366	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	367	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	368	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	369	locat=parameter; exit;;
[1]	370	esac
	371	fi
	372
	373
	374	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	375	if [[ $no_default_queue != none ]]
	376	then
	377	error=false
	378	ndq=$no_default_queue
	379	case $remote_host in
	380	(ibm) case $ndq in
	381	(p690_express\|p690_standard\|p690_long) error=false;;
	382	(*) error=true;;
	383	esac;;
	384	(ibmb) case $ndq in
	385	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
	386	(*) error=true;;
	387	esac;;
	388	(ibmh) case $ndq in
[312]	389	(no_class) error=false;;
[1]	390	(*) error=true;;
	391	esac;;
	392	(ibms) case $ndq in
	393	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	394	(*) error=true;;
	395	esac;;
	396	(ibmy) case $ndq in
	397	(parallel) error=false;;
	398	(*) error=true;;
	399	esac;;
[440]	400	(lckyoto) case $ndq in
	401	(eh\|ph) error=false;;
	402	(*) error=true;;
	403	esac;;
[191]	404	(lcsgib\|lcsgih) case $ndq in
[416]	405	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	406	(*) error=true;;
	407	esac;;
[1]	408	(lctit) case $ndq in
[129]	409	(novice\|sla1\|sla2\|sla3\|RAM64GB\|RAM128GB) error=false;;
[1]	410	(*) error=true;;
	411	esac;;
	412	(t3eb) case $ndq in
	413	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	414	(*) error=true;;
	415	esac;;
[251]	416	(necriam) case $ndq in
[253]	417	(SP\|SS\|P6) error=false;;
[251]	418	(*) error=true;;
	419	esac;;
[1]	420	(t3eh) case $ndq in
	421	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	422	(*) error=true;;
	423	esac;;
	424	(t3ej2\|t3ej5) case $ndq in
	425	(low\|normal\|high) error=false;;
	426	(*) error=true;;
	427	esac;;
	428	(t3es) case $ndq in
	429	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	430	(*) error=true;;
	431	esac;;
	432	(unics) case $ndq in
	433	(unics\|ht) error=false;;
	434	(*) error=true;;
	435	esac;;
	436	esac
	437	if [[ $error = true ]]
	438	then
	439	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	440	locat=parameter; exit
	441	else
	442	queue=$no_default_queue
	443	fi
	444	fi
	445
	446
	447
	448	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
	449	if [[ $node_usage != shared && $queue = cdev ]]
	450	then
	451	node_usage=shared
	452	fi
	453
	454
	455
	456	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	457	# AUFTEILEN
	458	done=false
	459	while [[ $done = false ]]
	460	do
	461	if (( $cputime <= 0 ))
	462	then
	463	printf "\n +++ wrong cpu-time or cpu-time missing"
	464	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	465	printf "\n >>> "
	466	read cputime 1>/dev/null 2>&1
	467	else
	468	done=true
	469	fi
	470	done
	471	if [[ $remote_host = nech ]]
	472	then
	473	if (( tasks_per_node != 0 ))
	474	then
	475	(( cputime = cputime * tasks_per_node ))
	476	elif [[ $numprocs != 0 ]]
	477	then
	478	(( cputime = cputime * numprocs ))
	479	fi
	480	fi
	481	(( stunden = cputime / 3600 ))
	482	(( resttime = cputime - stunden * 3600 ))
	483	(( minuten = resttime / 60 ))
	484	(( sekunden = resttime - minuten * 60 ))
	485	timestring=${stunden}:${minuten}:${sekunden}
	486
	487
	488
	489	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	490	done=false
	491	while [[ $done = false ]]
	492	do
	493	if (( memory <= 0 ))
	494	then
	495	printf "\n +++ wrong memory demand or memory demand missing"
	496	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	497	printf "\n >>> "
	498	read memory 1>/dev/null 2>&1
	499	else
	500	done=true
	501	fi
	502	done
	503
[251]	504	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	505	then
	506	if (( tasks_per_node != 0 ))
	507	then
	508	(( Memory = memory * tasks_per_node / 1000 ))
	509	elif [[ $numprocs != 0 ]]
	510	then
	511	(( Memory = memory * numprocs / 1000 ))
	512	else
	513	(( Memory = memory / 1000 ))
	514	fi
	515	fi
	516
	517
	518	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	519	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	520	then
	521	(( memory = memory * threads_per_task ))
	522	fi
	523
	524
	525	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	526	if (( tasks_per_node != 0 ))
	527	then
[377]	528	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	529	then
	530	(( nodes = numprocs / tasks_per_node ))
	531	else
	532	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	533	fi
[1]	534	fi
	535
	536
	537
	538	# HEADER-AUSGABE
	539	if [[ $verify = true ]]
	540	then
	541	printf "\n\n"
	542	printf "#--------------------------------------------------------------# \n"
	543	spalte1=SUBJOB;spalte2=$(date)
	544	printf "\| $spalte1$spalte2 \| \n"
	545	printf "\| \| \n"
	546	printf "\| values of parameters/options: \| \n"
	547	spalte1=local_host$punkte; spalte2=$punkte$local_host
	548	printf "\| $spalte1$spalte2 \| \n"
	549	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	550	printf "\| $spalte1$spalte2 \| \n"
	551	spalte1=queue$punkte; spalte2=$punkte$queue
	552	printf "\| $spalte1$spalte2 \| \n"
	553	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	554	printf "\| $spalte1$spalte2 \| \n"
	555	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	556	printf "\| $spalte1$spalte2 \| \n"
	557	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	558	printf "\| $spalte1$spalte2 \| \n"
	559	printf "#--------------------------------------------------------------# \n\n"
	560
	561
	562	# KONTROLLABFRAGE, OB ALLES O.K.
	563	antwort="dummy"
	564	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	565	do
	566	read antwort?" >>> continue (y/n) ? "
	567	done
	568	if [[ $antwort = n \|\| $antwort = N ]]
	569	then
	570	locat=verify; exit
	571	fi
	572	printf "\n"
	573	fi
	574
	575
	576
	577	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	578	kennung=$RANDOM
	579	job_on_remhost=${job_name}_${kennung}_$local_host
	580	job_to_send=job_to_send_$kennung
	581	if [[ $delete_dayfile = false ]]
	582	then
	583	remote_dayfile=${local_host}_${job_name}_result_$kennung
	584	local_dayfile=${remote_host}_${job_name}
	585	else
	586	remote_dayfile=/dev/null
	587	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	588	then
	589	notification='# @ notification = never'
	590	fi
	591	fi
	592
	593
	594
	595	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
	596	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	597	then
	598
	599	if [[ $remote_host = ibmy ]]
	600	then
	601	consumable_memory=""
	602	else
	603	consumable_memory="ConsumableMemory($memory mb)"
	604	fi
[312]	605
	606	if [[ $remote_host = ibmh ]]
[1]	607	then
[312]	608	data_limit=""
	609	network_to_use=""
	610	class=""
	611	environment=""
[1]	612	else
[312]	613	class="# @ class = $queue"
	614	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	615	if [[ $queue = cdev ]]
[1]	616	then
[312]	617	data_limit="# @ data_limit = 1.76gb"
	618	network_to_use="# @ network.mpi = sn_all,shared,ip"
[1]	619	else
[312]	620	if [[ $remote_host = ibms ]]
	621	then
	622	network_to_use="# @ network.mpi = csss,shared,us"
	623	elif [[ $remote_host = ibmy ]]
	624	then
	625	network_to_use=""
	626	else
	627	network_to_use="# @ network.mpi = sn_all,shared,us"
	628	data_limit="# @ data_limit = 1.76gb"
	629	fi
[1]	630	fi
	631	fi
	632
	633	cat > $job_to_send << %%END%%
	634	#!/bin/ksh
[312]	635	# @ shell = /bin/ksh
[1]	636
	637	# @ job_type = parallel
	638	# @ job_name = palm
	639	# @ wall_clock_limit = ${timestring},$timestring
	640	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	641	# @ output = $remote_dayfile
	642	# @ error = $remote_dayfile
	643	# @ image_size = 50
[312]	644	$class
	645	$environment
[1]	646	$network_to_use
	647	$data_limit
	648	$notification
	649
	650	%%END%%
	651
	652	if (( nodes > 0 ))
	653	then
	654
	655	cat >> $job_to_send << %%END%%
	656	# @ node = $nodes
	657	# @ tasks_per_node = $tasks_per_node
	658	# @ node_usage = $node_usage
	659	# @ queue
	660
	661	%%END%%
	662
	663	else
	664
	665	if [[ $remote_host != ibmy ]]
	666	then
	667
	668	cat >> $job_to_send << %%END%%
	669	# @ blocking = unlimited
	670	# @ total_tasks = $numprocs
	671	# @ node_usage = $node_usage
	672	# @ queue
	673
	674	%%END%%
	675
	676	else
	677
	678	cat >> $job_to_send << %%END%%
	679	# @ node = 1
	680	# @ total_tasks = $numprocs
	681	# @ queue
	682
	683	%%END%%
	684
	685	fi
	686
	687	fi
	688
	689	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	690	then
	691
	692	cat > $job_to_send << %%END%%
	693	#!/bin/ksh
	694
	695	# @ job_type = serial
	696	# @ node_usage = $node_usage
	697	# @ job_name = palm
	698	# @ wall_clock_limit = ${timestring},$timestring
	699	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	700	# @ output = $remote_dayfile
	701	# @ error = $remote_dayfile
[312]	702	$class
[1]	703	$notification
	704
	705	# @ queue
	706
	707	%%END%%
	708
[108]	709	elif [[ $remote_host = lcfimm ]]
	710	then
	711
	712	if [[ $numprocs != 0 ]]
	713	then
	714	cat > $job_to_send << %%END%%
	715	#!/bin/ksh
	716	#PBS -N $job_name
[206]	717	#PBS -A geofysisk
[108]	718	#PBS -l walltime=$timestring
	719	#PBS -l nodes=${nodes}:ppn=$tasks_per_node
	720	#PBS -l pmem=${memory}mb
	721	#PBS -m abe
	722	#PBS -o $remote_dayfile
	723	#PBS -j oe
	724	mpd &
	725
	726	%%END%%
	727
[168]	728	else
	729	cat > $job_to_send << %%END%%
	730	#!/bin/ksh
	731	#PBS -N $job_name
[206]	732	#PBS -A geofysisk
[168]	733	#PBS -l walltime=$timestring
	734	#PBS -l ncpus=1
	735	#PBS -l pmem=${memory}mb
	736	#PBS -m abe
	737	#PBS -o $remote_dayfile
	738	#PBS -j oe
	739
	740	%%END%%
	741
	742	fi
	743
[368]	744	elif [[ $remote_host = lck ]]
	745	then
	746
	747	if [[ $numprocs != 0 ]]
	748	then
	749	cat > $job_to_send << %%END%%
	750	#!/bin/ksh
	751	#PBS -N $job_name
	752	#PBS -l walltime=$timestring
	753	#PBS -l ncpus=$numprocs
	754	#PBS -l pmem=${memory}mb
	755	#PBS -o $remote_dayfile
	756	#PBS -j oe
	757
	758	mpd &
	759
	760	%%END%%
	761
	762	else
	763	cat > $job_to_send << %%END%%
	764	#!/bin/ksh
	765	#PBS -N $job_name
	766	#PBS -l walltime=$timestring
	767	#PBS -l ncpus=1
	768	#PBS -l pmem=${memory}mb
	769	#PBS -o $remote_dayfile
	770	#PBS -j oe
	771
	772	%%END%%
	773
	774	fi
	775
[181]	776	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	777	then
	778
[376]	779	if [[ "$sgi_feature" != "" ]]
	780	then
	781	feature_directive="#PBS -l feature=$sgi_feature"
	782	else
	783	feature_directive=""
	784	fi
[399]	785
[416]	786	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	787	then
	788	feature_directive="#PBS -l feature=data"
	789	fi
[376]	790
[416]	791	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	792	then
	793	queue_directive="#PBS -q $queue"
	794	else
	795	queue_directive=""
	796	fi
	797
[352]	798	if [[ $email_notification = none ]]
	799	then
	800	email_directive=""
	801	else
	802	email_directive="#PBS -M $email_notification"
	803	fi
	804
[179]	805	if [[ $numprocs != 0 ]]
	806	then
	807	cat > $job_to_send << %%END%%
[181]	808	#!/bin/bash
[179]	809	#PBS -N $job_name
	810	#PBS -l walltime=$timestring
[181]	811	#PBS -l nodes=$nodes:ppn=${tasks_per_node}
	812	#PBS -l naccesspolicy=$node_usage
[179]	813	#PBS -o $remote_dayfile
	814	#PBS -j oe
[376]	815	$feature_directive
[191]	816	$queue_directive
[352]	817	$email_directive
[179]	818
	819	. /usr/share/modules/init/bash
[493]	820	$module_calls
[374]	821
[181]	822	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	823
	824	%%END%%
	825
	826	else
	827	cat > $job_to_send << %%END%%
	828	#PBS -S /bin/bash
	829	#PBS -N $job_name
	830	#PBS -l walltime=$timestring
	831	#PBS -l ncpus=1
	832	#PBS -o $remote_dayfile
[475]	833	#PBS -j oe
[400]	834	$queue_directive
	835	$email_directive
[179]	836
[475]	837	. /usr/share/modules/init/bash
[493]	838	$module_calls
[475]	839
[179]	840	%%END%%
	841
	842	fi
	843
[164]	844	elif [[ $remote_host = lcxt4 ]]
	845	then
	846
	847	if [[ $numprocs != 0 ]]
	848	then
	849	cat > $job_to_send << %%END%%
	850	#!/bin/ksh
	851	#PBS -S /bin/ksh
	852	#PBS -N $job_name
[206]	853	#PBS -A geofysisk
	854	#PBS -j oe
[164]	855	#PBS -l walltime=$timestring
	856	#PBS -l mppwidth=${numprocs}
	857	#PBS -l mppnppn=${tasks_per_node}
	858	#PBS -m abe
	859	#PBS -o $remote_dayfile
[492]	860	$email_directive
[164]	861
[343]	862	. /opt/modules/default/init/ksh
[493]	863	$module_calls
[343]	864
[164]	865	%%END%%
	866
[108]	867	else
	868	cat > $job_to_send << %%END%%
	869	#!/bin/ksh
[168]	870	#PBS -S /bin/ksh
[108]	871	#PBS -N $job_name
[206]	872	#PBS -A geofysisk
	873	#PBS -j oe
[108]	874	#PBS -l walltime=$timestring
	875	#PBS -l ncpus=1
	876	#PBS -l pmem=${memory}mb
	877	#PBS -m abe
[492]	878	$email_directive
[108]	879	#PBS -o $remote_dayfile
	880
[343]	881	. /opt/modules/default/init/ksh
[493]	882	$module_calls
[343]	883
[108]	884	%%END%%
	885
	886	fi
	887
[440]	888	elif [[ $remote_host = lckyoto ]]
[437]	889	then
	890
[440]	891	cat > $job_to_send << %%END%%
	892	#!/bin/ksh
	893	# @\$-o $remote_dayfile
	894	# @\$-eo -oi
	895	# @\$-lP 16
	896	# @\$-lp 1
	897	# @\$-lm 28gb -llm unlimited -ls unlimited
	898	# @\$-q $queue
	899	# @\$-Pvn abs_pack
	900	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	901	#. /thin/local/etc/setprofile/intel-11.0.sh
	902	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	903	. ~/.myprofile
	904	#. /home2/t/t51254/palm/current_version/myprofile
	905	#. /thin/apps/pgi/mpi.sh
	906	#
	907	env
	908	#
	909	set -x
	910
	911	%%END%%
	912
	913	elif [[ $remote_host = lcxt5m ]]
	914	then
	915
[437]	916	if [[ $numprocs != 0 ]]
	917	then
	918	cat > $job_to_send << %%END%%
	919	#!/bin/ksh
	920	#PBS -S /bin/ksh
	921	#PBS -N $job_name
	922	#PBS -j oe
	923	#PBS -l walltime=$timestring
	924	#PBS -l mppwidth=${numprocs}
	925	#PBS -l mppnppn=${tasks_per_node}
	926	#PBS -m abe
	927	#PBS -o $remote_dayfile
	928
	929	. /opt/modules/default/init/ksh
[493]	930	$module_calls
[437]	931
	932	%%END%%
	933
	934	else
	935	cat > $job_to_send << %%END%%
	936	#!/bin/ksh
	937	#PBS -S /bin/ksh
	938	#PBS -N $job_name
	939	#PBS -j oe
	940	#PBS -l walltime=$timestring
	941	#PBS -l ncpus=1
	942	#PBS -l pmem=${memory}mb
	943	#PBS -m abe
	944	#PBS -o $remote_dayfile
	945
	946	. /opt/modules/default/init/ksh
[493]	947	$module_calls
[437]	948
	949	%%END%%
	950
	951	fi
	952
[1]	953	elif [[ $remote_host = nech ]]
	954	then
	955
	956	if (( nodes > 1 ))
	957	then
	958	cat > $job_to_send << %%END%%
	959	#!/bin/ksh
	960	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	961	#PBS -l ${qsubmem}=${Memory}gb
	962	#PBS -b $nodes
	963	#PBS -o $remote_dayfile
	964	#PBS -N palm
	965	#PBS -j o
	966	#PBS -T mpisx
	967
	968	%%END%%
	969
	970	elif [[ $numprocs != 0 ]]
	971	then
	972	cat > $job_to_send << %%END%%
	973	#!/bin/ksh
	974	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	975	#PBS -l ${qsubmem}=${Memory}gb
	976	#PBS -o $remote_dayfile
	977	#PBS -N palm
	978	#PBS -j o
	979
	980	%%END%%
	981
	982	else
	983	cat > $job_to_send << %%END%%
	984	#!/bin/ksh
	985	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	986	#PBS -o $remote_dayfile
	987	#PBS -j o
	988
	989	%%END%%
	990
	991	fi
	992
[251]	993	elif [[ $remote_host = necriam ]]
[35]	994	then
	995
	996	if (( nodes > 1 ))
	997	then
	998	cat > $job_to_send << %%END%%
	999	#!/bin/ksh
	1000	#PBS -b $nodes
	1001	#PBS -o $remote_dayfile
[253]	1002	#PBS -N $job_name
[35]	1003	#PBS -j o
[251]	1004	#PBS -v MPIPROGINV=YES
[35]	1005
	1006	%%END%%
	1007
	1008	elif [[ $numprocs != 0 ]]
	1009	then
	1010	cat > $job_to_send << %%END%%
	1011	#!/bin/ksh
	1012	#PBS -q ${queue}
	1013	#PBS -o $remote_dayfile
[253]	1014	#PBS -N $job_name
[35]	1015	#PBS -j o
[251]	1016	#PBS -v MPIPROGINV=YES
[35]	1017
	1018	%%END%%
	1019
	1020	else
	1021	cat > $job_to_send << %%END%%
	1022	#!/bin/ksh
	1023	#PBS -o $remote_dayfile
	1024	#PBS -j o
	1025
	1026	%%END%%
	1027
	1028	fi
	1029
[1]	1030	elif [[ $remote_host = lctit ]]
	1031	then
	1032	cat > $job_to_send << %%END%%
	1033	#!/bin/bash
	1034	#$ -S /bin/bash
	1035	cd $job_catalog
[69]	1036	export PATH=$PALM_BIN:\$PATH
	1037	echo \$PATH
[1]	1038
	1039	%%END%%
	1040
	1041	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[118]	1042	# submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
[122]	1043	submcom="$submcom -g $group_number -N $job_name -rt 4320 -sgeout $remote_dayfile -q $node_usage "
[1]	1044
	1045	else
	1046
	1047	cat > $job_to_send << %%END%%
	1048	# @\$-q ${queue}
	1049	# @\$-l${qsubtime} $timestring
	1050	# @\$-l${qsubmem} ${memory}mb
	1051	# @\$-o $remote_dayfile
	1052	# @\$-eo
	1053
	1054	%%END%%
	1055
	1056	fi
	1057
	1058
	1059	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1060	# BEI EXIT VERANLASSEN
	1061	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1062	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1063	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1064	then
	1065	echo "set +vx" >> $job_to_send
	1066	echo "trap '" >> $job_to_send
	1067	echo "set +vx" >> $job_to_send
[181]	1068	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
[1]	1069	then
	1070	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
	1071	then
	1072	return_queue=c1
	1073	elif [[ $remote_host = ibms ]]
	1074	then
	1075	return_queue=p_normal
	1076	elif [[ $remote_host = ibmy ]]
	1077	then
	1078	return_queue=serial
[325]	1079	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1080	then
[326]	1081	return_queue=serialq
[1]	1082	elif [[ $remote_host = lctit ]]
	1083	then
[118]	1084	return_queue=sla3
[251]	1085	elif [[ $remote_host = necriam ]]
[1]	1086	then
[253]	1087	return_queue=SP
[1]	1088	else
	1089	return_queue=unknown
	1090	fi
	1091
	1092	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1093	then
	1094
	1095	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1096	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1097	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1098	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1099	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1100	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1101	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1102	if [[ $host != "ibmh" ]]
	1103	then
	1104	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1105	fi
[1]	1106	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1107	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1108
	1109	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1110	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1111
	1112	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	1113	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
	1114	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1115
	1116	elif [[ $remote_host = nech ]]
	1117	then
	1118	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1119	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1120	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1121	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1122	echo "#PBS -j o" >> $job_to_send
	1123	echo " " >> $job_to_send
	1124	echo "set -x" >> $job_to_send
	1125	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1126	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1127	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1128	echo "%%END%%" >> $job_to_send
	1129
[251]	1130	elif [[ $remote_host = necriam ]]
[35]	1131	then
	1132	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1133	echo "#PBS -q $return_queue" >> $job_to_send
	1134	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1135	echo "#PBS -j o" >> $job_to_send
	1136	echo " " >> $job_to_send
	1137	echo "set -x" >> $job_to_send
	1138	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1139	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1140	echo "%%END%%" >> $job_to_send
	1141
[181]	1142	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1143	then
	1144	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1145	echo "#!/bin/bash" >> $job_to_send
	1146	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1147	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1148	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1149	echo "#PBS -l feature=data" >> $job_to_send
[181]	1150	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1151	echo "#PBS -j oe" >> $job_to_send
	1152	echo " " >> $job_to_send
	1153	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1154	echo "set -x" >> $job_to_send
	1155	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1156	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1157	echo "%%END%%" >> $job_to_send
	1158
[1]	1159	elif [[ $remote_host = lctit ]]
	1160	then
	1161	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1162	echo "set -x" >> $job_to_send
	1163	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
	1164	echo "cd $job_catalog" >> $job_to_send
	1165	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1166	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1167	echo "%%END%%" >> $job_to_send
	1168
	1169	else
	1170
	1171	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1172	echo "# @\\\$-q $return_queue" >> $job_to_send
	1173	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1174	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1175	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1176	then
	1177	echo "# @\$-l mpp_p=0" >> $job_to_send
	1178	fi
	1179	echo '# @\$-lF 10mb' >> $job_to_send
	1180	# echo '# @\$-o /dev/null' >> $job_to_send
	1181	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1182	echo '# @\\\$-eo' >> $job_to_send
	1183	echo " " >> $job_to_send
	1184	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1185	then
	1186	echo "set +vx" >> $job_to_send
	1187	echo ". .profile" >> $job_to_send
	1188	fi
	1189	echo "set -x" >> $job_to_send
	1190	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	1191	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1192	echo "%%END%%" >> $job_to_send
	1193	fi
	1194
	1195	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1196	then
	1197	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1198	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1199	then
	1200	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1201	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1202	elif [[ $remote_host = lctit ]]
	1203	then
	1204	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1205	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
	1206	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
	1207	echo "sleep 10" >> $job_to_send
	1208	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1209	then
	1210	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1211	elif [[ $remote_host = t3es ]]
	1212	then
	1213	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	1214	else
	1215	echo "qsub scpjob.$kennung" >> $job_to_send
	1216	fi
	1217	echo "rm scpjob.$kennung" >> $job_to_send
	1218	if [[ $remote_host = nech ]]
	1219	then
	1220	echo "cd -" >> $job_to_send
	1221	fi
	1222	else
	1223	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1224	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1225	fi
	1226	echo "set -x" >> $job_to_send
	1227	echo " ' exit" >> $job_to_send
	1228	echo "set -x" >> $job_to_send
	1229	fi
	1230
	1231
	1232
	1233	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1234	cat $file_to_send >> $job_to_send
[69]	1235
[1]	1236	if [[ $remote_host = ibm ]]
	1237	then
	1238	echo " " >> $job_to_send
	1239	echo "exit" >> $job_to_send
	1240	fi
[69]	1241	if [[ $remote_host = lctit ]]
	1242	then
	1243	echo " " >> $job_to_send
	1244	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1245	fi
[1]	1246
	1247
	1248
	1249	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1250	if [[ -z $remote_user ]]
	1251	then
	1252	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1253	then
	1254	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1255	fi
	1256	fi
	1257
	1258
	1259
	1260	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1261	if [[ $no_submit = false ]]
	1262	then
	1263	if [[ $remote_host != $local_host ]]
	1264	then
	1265	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1266	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1267	then
[82]	1268	job_catalog_save=$job_catalog
	1269	job_catalog=job_queue
	1270	elif [[ $remote_host = nech ]]
	1271	then
	1272	job_catalog_save=$job_catalog
	1273	job_catalog=/hpf/b/${remote_user}/job_queue
	1274	fi
	1275	if [[ $local_host = decalpha ]]
	1276	then
	1277	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	1278	# PASSWORT AB
	1279	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	1280	elif [[ $remote_host = nech ]]
	1281	then
	1282	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1283	# TRANSFERIERT WERDEN
	1284	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1285	else
[82]	1286	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1287	fi
[82]	1288	if [[ $? = 1 ]]
	1289	then
	1290	locat=scp; exit
	1291	fi
	1292	if [[ $remote_host = ibms ]]
	1293	then
	1294	job_catalog=$job_catalog_save
	1295	fi
[1]	1296	[[ $verify = true ]] && printf "\n >>> finished\n"
	1297	else
	1298	eval job_catalog=$job_catalog
	1299	cp $job_to_send ${job_catalog}/$job_on_remhost
	1300	fi
	1301
	1302
	1303
	1304	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1305	if [[ $remote_host != $local_host ]]
	1306	then
	1307	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[82]	1308	if [[ $remote_host != lctit ]]
[1]	1309	then
[372]	1310	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
	1311	then
	1312	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
	1313	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
	1314	else
	1315	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
	1316	fi
[1]	1317	else
[206]	1318	# TIT ERLAUBT NUR DIE AUSFï¿œHRUNG GANZ BESTIMMTER KOMMANDOS
[82]	1319	# MIT SSH, DESHALB AUFRUF PER PIPE
	1320	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
	1321	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1322	echo "first try" > send_protocol
	1323	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
	1324	do
	1325	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
	1326	then
	1327	printf "\n trying to submit job to TIT cluster..."
	1328	else
	1329	printf "\n +++ failed ... trying to submit again ..."
	1330	fi
	1331	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
	1332	cat send_protocol
	1333	done
	1334	sleep 10
	1335	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1336	echo "$submcom $job_on_remhost"
	1337	rm send_protocol
	1338	fi
[1]	1339
	1340	[[ $verify = true ]] && printf " >>> o.k.\n"
	1341	else
	1342	cd $job_catalog
[210]	1343	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1344	then
	1345	eval $submcom $job_on_remhost
[367]	1346	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck ]]
[108]	1347	then
	1348	eval $submcom $job_on_remhost
	1349	echo "$submcom $job_on_remhost"
	1350	chmod u+x $job_on_remhost
[407]	1351
[292]	1352	elif [[ $(echo $local_host \| cut -c1-5) = lcsgi ]]
	1353	then
	1354	eval $submcom $job_on_remhost
[1]	1355	elif [[ $local_host = nech ]]
	1356	then
	1357	if [[ $queue = default ]]
	1358	then
	1359	eval $submcom $job_on_remhost
	1360	else
	1361	eval $submcom -q $queue $job_on_remhost
	1362	fi
	1363	else
	1364	qsub $job_on_remhost
	1365	fi
[69]	1366	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
	1367	[[ $local_host != lctit ]] && rm $job_on_remhost
[1]	1368	cd - > /dev/null
	1369	fi
	1370	fi
	1371
	1372
	1373
	1374	# ABSCHLUSSARBEITEN
	1375
	1376	if [[ $no_submit = false ]]
	1377	then
	1378	rm $job_to_send
	1379	fi
	1380	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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source: palm/trunk/SCRIPTS/subjob @ 515

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